BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4881
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/212 (63%), Positives = 161/212 (75%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
PLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMGT
Sbjct: 164 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 223
Query: 258 SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
S ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY G
Sbjct: 224 SVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
HSMSDPG SYRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+ +
Sbjct: 284 HSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 378 KARADPEVGLDELTGDIYAVPLETDIRGTTPF 409
A ADPE L+EL IY+ ++RG +
Sbjct: 344 FATADPEPPLEELGYHIYSSDPPFEVRGANQW 375
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/212 (63%), Positives = 161/212 (75%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
PLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMGT
Sbjct: 164 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 223
Query: 258 SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
S ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY G
Sbjct: 224 SVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
HSMSDPG SYRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+ +
Sbjct: 284 HSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 378 KARADPEVGLDELTGDIYAVPLETDIRGTTPF 409
A ADPE L+EL IY+ ++RG +
Sbjct: 344 FATADPEPPLEELGYHIYSSDPPFEVRGANQW 375
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 134/212 (63%), Positives = 160/212 (75%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
PLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMGT
Sbjct: 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 206
Query: 258 SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
S ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY G
Sbjct: 207 SVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 266
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
H MSDPG SYRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+ +
Sbjct: 267 HEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 326
Query: 378 KARADPEVGLDELTGDIYAVPLETDIRGTTPF 409
A ADPE L+EL IY+ ++RG +
Sbjct: 327 FATADPEPPLEELGYHIYSSDPPFEVRGANQW 358
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 161/212 (75%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
PLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMGT
Sbjct: 164 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 223
Query: 258 SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
+ ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY G
Sbjct: 224 AVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
HSMSDPG +YRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+ +
Sbjct: 284 HSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 378 KARADPEVGLDELTGDIYAVPLETDIRGTTPF 409
A ADPE L+EL IY+ ++RG +
Sbjct: 344 FATADPEPPLEELGYHIYSSDPPFEVRGANQW 375
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 281 bits (719), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 132/212 (62%), Positives = 160/212 (75%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
PLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMGT
Sbjct: 164 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 223
Query: 258 SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
+ ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY G
Sbjct: 224 AVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
H MSDPG +YRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+ +
Sbjct: 284 HXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 378 KARADPEVGLDELTGDIYAVPLETDIRGTTPF 409
A ADPE L+EL IY+ ++RG +
Sbjct: 344 FATADPEPPLEELGYHIYSSDPPFEVRGANQW 375
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/212 (62%), Positives = 155/212 (73%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
PLG GIALA KY+G VC LYGDGAANQGQ+FE YN A LW +PCIF+CENN YG GT
Sbjct: 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENNRYGXGT 206
Query: 258 SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
S ERA+AS DYY RGD+IPG+ VDG DIL VREA RFA +CRS KGPIL E TYRY G
Sbjct: 207 SVERAAASTDYYKRGDFIPGLRVDGXDILCVREATRFAAAYCRSGKGPILXELQTYRYHG 266
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
HS SDPG SYRTR+EIQEVR DPI LKD+ +N++L + EELK+ID EV+ EI+ +
Sbjct: 267 HSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLASVEELKEIDVEVRKEIEDAAQ 326
Query: 378 KARADPEVGLDELTGDIYAVPLETDIRGTTPF 409
A ADPE L+EL IY+ ++RG +
Sbjct: 327 FATADPEPPLEELGYHIYSSDPPFEVRGANQW 358
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 4/199 (2%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSS 259
G+AL K G K V GDG +QG +E N A + P IFV +NN + + T
Sbjct: 152 AAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 211
Query: 260 ERASASVDYYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
E+ + + + IPGI VDGMD LAV A + A + +GP L+ET +RY
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 318 HSMS-DPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
H+MS D T YR++ E++ +DP+ + + L + EE + + K EI I
Sbjct: 272 HTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAI 330
Query: 377 KKARADPEVGLDELTGDIY 395
KKA P+ + +L ++
Sbjct: 331 KKADETPKQKVTDLISIMF 349
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 4/199 (2%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSS 259
G+AL K G K V GDG +QG +E N A + P IFV +NN + + T
Sbjct: 151 AAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 260 ERASASVDYYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
E+ + + + IPGI VDGMD LAV A + A + +GP L+ET +RY
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 318 HSMS-DPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
H+MS D T YR++ E++ +DP+ + + L + EE + + K EI I
Sbjct: 271 HTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAI 329
Query: 377 KKARADPEVGLDELTGDIY 395
KKA P+ + +L ++
Sbjct: 330 KKADETPKQKVTDLISIMF 348
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 4/199 (2%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSS 259
G+AL K G K V GDG +QG ++ N A + P IFV +NN + + T
Sbjct: 151 AAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 260 ERASASVDYYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
E+ + + + IPGI VDGMD LAV A + A + +GP L+ET +RY
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 318 HSMS-DPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
H+MS D T YR++ E++ +DP+ + + L + EE + + K EI I
Sbjct: 271 HTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAI 329
Query: 377 KKARADPEVGLDELTGDIY 395
KKA P+ + +L ++
Sbjct: 330 KKADETPKQKVTDLISIMF 348
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 4/199 (2%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSS 259
G+AL K G K V GDG +QG +E N A + P IFV +NN + T
Sbjct: 152 AAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTPV 211
Query: 260 ERASASVDYYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317
E+ + + + IPGI VDGMD LAV A + A + +GP L+ET +RY
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 318 HSMS-DPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
H+MS D T YR++ E++ +DP+ + + L + EE + + K EI I
Sbjct: 272 HTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAI 330
Query: 377 KKARADPEVGLDELTGDIY 395
KKA P+ + +L ++
Sbjct: 331 KKADETPKQKVTDLISIMF 349
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
HS SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
HS SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
HS SD ++YR DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
H+ SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
H SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P G A++ K T V +GDGA ++G + N A + P +F+ ENN Y +
Sbjct: 151 PPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISV 210
Query: 258 --SSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ S ++ IPG VDGMD+LA + AV R +GP L+E YRY
Sbjct: 211 DYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRY 270
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
HS +D + YR ++E+ R+ +DPI + + L E + + E++AE++
Sbjct: 271 GPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERG 329
Query: 376 IKKARADPEVGLDELTGDIYA 396
+K+A V + + D++A
Sbjct: 330 LKEAEEAGPVPPEWMFEDVFA 350
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
HS SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
H SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
H SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
H SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TY
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD ++YR+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 2/200 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 258 SSERASASVDYYTRGD--YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S S +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 289 GHASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 376 IKKARADPEVGLDELTGDIY 395
++A P+ + L D+Y
Sbjct: 349 FEQAERKPKPNPNLLFSDVY 368
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSS 259
VG A+A+ G + A GDGA + A ++ P I NN + + T
Sbjct: 191 AVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQ 250
Query: 260 ERASA-SVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 316
A S + RG I + VDG D +AV A+R+A R GP L+E TYR
Sbjct: 251 AIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 310
Query: 317 GHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
HS SD + YR D+ DPI+ LK ++ + EE + E +A + A
Sbjct: 311 PHSTSDDPSKYRPADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 369
Query: 377 KKA 379
K+A
Sbjct: 370 KEA 372
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSS 259
VG A A+ G + A GDGA + A ++ P I NN + + T
Sbjct: 190 AVGWAXASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQ 249
Query: 260 ERASA-SVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 316
A S + RG I + VDG D +AV A+R+A R GP L+E TYR
Sbjct: 250 AIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 309
Query: 317 GHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
HS SD + YR D+ DPI+ LK ++ + EE + E +A + A
Sbjct: 310 PHSTSDDPSKYRPADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368
Query: 377 KKA 379
K+A
Sbjct: 369 KEA 371
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 54 LINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLI 112
LIN K + V + I D + A CRCW+SK FP CD SH HN+ DNVGPLI
Sbjct: 18 LINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLI 77
Query: 113 I 113
+
Sbjct: 78 L 78
>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
Length = 81
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 43 SEEFWGTEPRR--LINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYH 100
S+ F+ + R +IN + K + + F ++ CRCW+SKKFPFCD +H H
Sbjct: 2 SKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKH 61
Query: 101 NKFHKDNVGPLII 113
N+ DNVGPLII
Sbjct: 62 NEETGDNVGPLII 74
>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
Length = 77
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 52 RRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGP 110
+ +IN + K + + F + D G CRCW+SKKFPFCD +H HN+ DNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 69
Query: 111 LII 113
LII
Sbjct: 70 LII 72
>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
Length = 76
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 II 113
II
Sbjct: 70 II 71
>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
Length = 84
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 54 LINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLII 113
+IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPLII
Sbjct: 13 MINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
Length = 80
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 73
Query: 112 II 113
II
Sbjct: 74 II 75
>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel [2fe-
2s] Cluster Coordination
Length = 79
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 72
Query: 112 II 113
II
Sbjct: 73 II 74
>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
Length = 83
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 55 INKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLII 113
IN K+ D V D + + + CRCW+S FP CD SH HNK + DNVGPL++
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLL 80
>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
Length = 76
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 II 113
II
Sbjct: 70 II 71
>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
Length = 76
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 II 113
II
Sbjct: 70 II 71
>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
Length = 79
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD + HN+ DNVGPL
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPL 73
Query: 112 II 113
II
Sbjct: 74 II 75
>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
Length = 76
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 82 CRCWKSKKFPFCDNSHKYHNKFHKDNVGPLII 113
CRCW+SKKFPFCD +H HN+ DNVGPLII
Sbjct: 40 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
Length = 83
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 55 INKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLII 113
IN K+ D V D + + + CRCW+S FP CD S HNK + DNVGPL++
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLL 80
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----AARWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 401 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 453
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 454 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 506
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 507 QEALSAKGPVLIEVST 522
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 402 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 454
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 455 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 507
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 508 QEALSAKGPVLIEVST 523
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 37/136 (27%)
Query: 200 GVGIALAA----KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCEN 250
G+G AL A + + + A+ GDG+AN Y+I+ LW NIP IFV N
Sbjct: 401 GLGFALPAAIGVQLAEPERQVIAVIGDGSAN-------YSISALWTAAQYNIPTIFVIMN 453
Query: 251 NG-YGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVR-------------EAARFAV 296
NG YG + R A V + +PG+ V G+D A+ E + ++
Sbjct: 454 NGTYG----ALRWFAGV---LEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSL 506
Query: 297 NHCRSDKGPILLETAT 312
S KGP+L+E +T
Sbjct: 507 QEALSAKGPVLIEVST 522
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 215 VCFALYGDGA-ANQGQVFEVYNIAKLWNI---PCIFVCENNGYGMGTSSERASASVDYYT 270
V L+GD A A QG V E N+A L I + NN G T++ S S +Y T
Sbjct: 524 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPTDSRSSEYCT 582
Query: 271 RGDYIPG---IWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 322
+ G V+G D A AR AV+ ++ K ++++ YR GH+ D
Sbjct: 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 637
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 215 VCFALYGDGA-ANQGQVFEVYNIAKLWNI---PCIFVCENNGYGMGTSSERASASVDYYT 270
V L+GD A A QG V E N+A L I + NN G T++ S S +Y T
Sbjct: 279 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPTDSRSSEYCT 337
Query: 271 RGDYIPG---IWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 322
+ G V+G D A AR AV+ ++ K ++++ YR GH+ D
Sbjct: 338 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 392
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 210 SGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPC---IFVCENNGYGMGTSSERASAS 265
S K + ++GD A QG V E N++K + + NN G TS+ + S
Sbjct: 345 SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARS 404
Query: 266 VDYYTR-GDYI--PGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 322
Y T G + P V+ D AV R A++ + K + ++ YR GH+ +D
Sbjct: 405 TPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEAD 464
Query: 323 PGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374
++ + Q++++ P DK+ + T E+ ++ + +DA
Sbjct: 465 EPSATQPL-MYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDA 515
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 210 SGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPC---IFVCENNGYGMGTSSERASAS 265
S K + ++GD A QG V E N++K + + NN G TS+ + S
Sbjct: 345 SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARS 404
Query: 266 VDYYTR-GDYI--PGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 322
Y T G + P V+ D AV R A++ + K + ++ YR GH+ +D
Sbjct: 405 TPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEAD 464
Query: 323 PGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374
++ + Q++++ P DK+ + T E+ ++ + +DA
Sbjct: 465 EPSATQPL-MYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDA 515
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIA 237
G+GIA+AA+ G + GDGA G FE N A
Sbjct: 130 GIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHA 167
>pdb|3TBM|A Chain A, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein.
pdb|3TBM|B Chain B, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein
Length = 69
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 81 ICRCWKSKKFPFCDNSHK 98
+CRC S PFCD SHK
Sbjct: 43 LCRCGHSLNKPFCDGSHK 60
>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase
Subunit Ii) From Geobacillus Kaustophilus
pdb|2EJ5|B Chain B, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase
Subunit Ii) From Geobacillus Kaustophilus
Length = 257
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 346 LKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIRG 405
+K ++ +L P++L ++ AE+ +K+A ADP V +TG A D+ G
Sbjct: 9 VKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSG 68
Query: 406 TT 407
T
Sbjct: 69 VT 70
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
Length = 142
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 106 DNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT 136
N G L++ G+ D++L+ + PTP ++T
Sbjct: 2 QNAGSLVVLGSINADHILNLQSFPTPGETVT 32
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Ndk, The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Ndk, The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 40 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 75
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 31 KVFGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
++ G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3TBN|A Chain A, Crystal Structure Of A Miner2 Homolog: A Type 6 Cdgsh
Iron-Sulfur Protein
Length = 87
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 82 CRCWKSKKFPFCDNSHK 98
C C +SK PFCD SHK
Sbjct: 33 CACGRSKAQPFCDGSHK 49
>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8
pdb|1SEI|B Chain B, Structure Of 30s Ribosomal Protein S8
Length = 130
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 341 DPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKK 378
DPI+ + I NA++V E+L+ +++K EI ++K+
Sbjct: 4 DPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKR 41
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 48 GTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 33 ATELMNILNKVVTRHPDLKTDGFGIDTSRSMVAVMDSDTTGKLGFEEFKYLWNN 86
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 317 GHSMSDPGTSYR-TRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKI---DTEVKAEI 372
G S+ D G Y + + V D + ++K + + + +TP ELKK D + EI
Sbjct: 533 GKSLQDGGAEYNFSGPQGVGVANIGDSLVAVKKIVFDENKITPSELKKTLNNDFKNSEEI 592
Query: 373 DAVIKKARADPEVGLD 388
A++K A P+ G D
Sbjct: 593 QALLKNA---PKFGND 605
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 48 GTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 749 ATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 802
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,069,471
Number of Sequences: 62578
Number of extensions: 570115
Number of successful extensions: 1536
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 83
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)