Query psy4881
Match_columns 423
No_of_seqs 472 out of 3490
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:12:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.1E-54 2.4E-59 432.3 26.0 265 131-407 81-354 (358)
2 KOG0225|consensus 100.0 1.1E-52 2.3E-57 405.3 24.2 248 148-405 131-379 (394)
3 PLN02269 Pyruvate dehydrogenas 100.0 2.4E-49 5.2E-54 399.8 25.0 243 143-398 100-344 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 3.9E-48 8.4E-53 389.3 25.3 261 124-397 66-341 (341)
5 PF00676 E1_dh: Dehydrogenase 100.0 1.3E-48 2.9E-53 386.8 21.4 199 190-388 100-300 (300)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 1.6E-47 3.5E-52 381.5 24.8 205 190-396 108-315 (315)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 4.5E-47 9.7E-52 382.1 23.3 216 190-406 120-338 (341)
8 PLN02374 pyruvate dehydrogenas 100.0 2.5E-46 5.5E-51 384.8 27.0 269 117-398 125-408 (433)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 8.4E-43 1.8E-47 344.6 23.6 192 187-379 99-293 (293)
10 KOG1182|consensus 100.0 1.9E-42 4.1E-47 331.5 14.9 234 165-405 173-410 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.5E-37 3.3E-42 342.2 22.2 203 190-396 313-527 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.9E-36 4.2E-41 332.3 21.9 197 190-387 314-522 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.9E-31 6.4E-36 256.5 13.4 142 190-332 112-264 (265)
14 COG0028 IlvB Thiamine pyrophos 100.0 1.2E-30 2.5E-35 277.5 13.1 261 21-315 239-533 (550)
15 KOG4166|consensus 100.0 2.3E-30 5.1E-35 257.2 8.2 259 22-314 339-648 (675)
16 PF13292 DXP_synthase_N: 1-deo 99.9 2.6E-28 5.6E-33 233.1 8.9 208 77-312 17-270 (270)
17 COG1154 Dxs Deoxyxylulose-5-ph 99.9 2.3E-27 5E-32 246.3 13.3 216 78-321 22-287 (627)
18 TIGR01504 glyox_carbo_lig glyo 99.9 1.5E-26 3.2E-31 248.9 10.6 215 91-314 293-556 (588)
19 PRK12315 1-deoxy-D-xylulose-5- 99.9 8.8E-26 1.9E-30 242.0 12.5 213 78-320 20-250 (581)
20 PRK06154 hypothetical protein; 99.9 2.1E-25 4.6E-30 238.9 15.0 261 22-314 254-556 (565)
21 PLN02225 1-deoxy-D-xylulose-5- 99.9 3.6E-25 7.8E-30 237.8 12.6 212 78-316 96-367 (701)
22 PRK07979 acetolactate synthase 99.9 7.3E-25 1.6E-29 235.2 14.8 214 91-314 296-549 (574)
23 PRK07418 acetolactate synthase 99.9 5.5E-25 1.2E-29 238.0 13.6 209 92-314 315-560 (616)
24 PRK08979 acetolactate synthase 99.9 8E-25 1.7E-29 234.8 13.8 212 91-314 296-547 (572)
25 TIGR03457 sulphoacet_xsc sulfo 99.9 7.6E-25 1.6E-29 235.3 12.8 268 21-315 235-559 (579)
26 PRK09107 acetolactate synthase 99.9 1.2E-24 2.6E-29 234.4 13.4 263 30-314 249-555 (595)
27 PRK07525 sulfoacetaldehyde ace 99.9 9E-25 2E-29 235.1 11.0 269 21-316 239-565 (588)
28 PRK06725 acetolactate synthase 99.9 3.3E-24 7.2E-29 229.9 13.7 211 91-314 304-546 (570)
29 cd02006 TPP_Gcl Thiamine pyrop 99.9 7.9E-24 1.7E-28 198.5 14.3 166 141-315 6-196 (202)
30 PRK07524 hypothetical protein; 99.9 5.6E-24 1.2E-28 226.5 14.8 214 92-317 290-533 (535)
31 PRK06466 acetolactate synthase 99.9 3.5E-24 7.6E-29 229.9 12.9 212 91-314 296-549 (574)
32 PLN02470 acetolactate synthase 99.9 3.8E-24 8.2E-29 230.2 12.5 211 91-314 303-558 (585)
33 cd02013 TPP_Xsc_like Thiamine 99.9 1.6E-23 3.4E-28 195.6 14.7 165 142-316 3-182 (196)
34 PRK09124 pyruvate dehydrogenas 99.9 6.9E-24 1.5E-28 227.6 14.0 255 22-314 239-531 (574)
35 PRK08273 thiamine pyrophosphat 99.9 5.3E-24 1.1E-28 229.6 13.1 263 30-315 241-548 (597)
36 PRK06965 acetolactate synthase 99.9 6.4E-24 1.4E-28 228.5 13.6 210 93-314 314-563 (587)
37 PRK06048 acetolactate synthase 99.9 8E-24 1.7E-28 226.6 14.0 211 91-314 297-539 (561)
38 PRK06456 acetolactate synthase 99.9 5E-24 1.1E-28 228.6 12.3 260 22-314 247-546 (572)
39 PRK12270 kgd alpha-ketoglutara 99.9 1.3E-22 2.9E-27 218.9 23.0 195 191-387 619-826 (1228)
40 TIGR03393 indolpyr_decarb indo 99.9 1E-23 2.3E-28 224.7 14.1 205 93-313 298-527 (539)
41 CHL00099 ilvB acetohydroxyacid 99.9 8.8E-24 1.9E-28 227.3 13.1 262 30-314 252-556 (585)
42 PRK07710 acetolactate synthase 99.9 9.9E-24 2.2E-28 226.3 12.9 211 91-314 305-549 (571)
43 PRK08978 acetolactate synthase 99.9 1.5E-23 3.2E-28 223.8 13.7 262 30-314 231-526 (548)
44 PRK07789 acetolactate synthase 99.9 6.5E-24 1.4E-28 229.5 10.6 261 22-314 271-577 (612)
45 PRK11269 glyoxylate carboligas 99.9 1.2E-23 2.7E-28 226.4 12.7 215 91-314 294-557 (591)
46 PRK08527 acetolactate synthase 99.9 2E-23 4.4E-28 223.6 14.1 211 91-314 293-539 (563)
47 PRK07282 acetolactate synthase 99.9 9.8E-24 2.1E-28 226.2 11.6 210 91-314 300-542 (566)
48 PRK08611 pyruvate oxidase; Pro 99.9 2.1E-23 4.6E-28 224.0 13.6 209 93-314 288-531 (576)
49 PRK08155 acetolactate synthase 99.9 3.5E-23 7.5E-28 221.8 14.1 211 91-314 301-544 (564)
50 PRK06457 pyruvate dehydrogenas 99.9 3.6E-23 7.7E-28 221.1 14.1 255 22-314 233-520 (549)
51 TIGR02418 acolac_catab acetola 99.9 4.5E-23 9.8E-28 219.7 14.6 264 29-314 229-531 (539)
52 TIGR02720 pyruv_oxi_spxB pyruv 99.9 4.5E-23 9.7E-28 221.5 13.9 208 96-314 291-533 (575)
53 cd02004 TPP_BZL_OCoD_HPCL Thia 99.9 1.4E-22 3.1E-27 185.0 14.9 155 145-312 1-171 (172)
54 PRK06546 pyruvate dehydrogenas 99.9 6.2E-23 1.4E-27 220.5 14.6 210 93-315 285-532 (578)
55 PLN02573 pyruvate decarboxylas 99.9 9E-23 1.9E-27 219.2 15.1 265 28-313 257-552 (578)
56 PRK08322 acetolactate synthase 99.9 1.2E-22 2.6E-27 216.8 15.9 209 93-314 287-529 (547)
57 PRK08617 acetolactate synthase 99.9 5.3E-23 1.1E-27 219.8 12.9 210 92-314 292-537 (552)
58 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 3.7E-23 8E-28 223.1 11.4 213 79-321 19-282 (617)
59 PRK06882 acetolactate synthase 99.9 1.2E-22 2.7E-27 217.9 13.7 261 22-314 246-547 (574)
60 PRK05858 hypothetical protein; 99.9 1.2E-22 2.6E-27 216.7 13.4 209 93-314 286-531 (542)
61 TIGR00118 acolac_lg acetolacta 99.9 1.2E-22 2.6E-27 217.3 13.1 263 30-314 236-537 (558)
62 PRK06112 acetolactate synthase 99.9 5.3E-22 1.1E-26 213.3 16.0 211 91-314 308-561 (578)
63 cd02012 TPP_TK Thiamine pyroph 99.9 1.3E-21 2.9E-26 189.9 17.0 133 186-321 99-235 (255)
64 PRK06276 acetolactate synthase 99.9 2.4E-22 5.1E-27 216.3 12.8 211 91-314 293-544 (586)
65 PRK08327 acetolactate synthase 99.9 4.3E-22 9.3E-27 213.6 14.4 212 92-313 302-567 (569)
66 PRK12571 1-deoxy-D-xylulose-5- 99.9 2.2E-22 4.8E-27 217.8 11.1 214 80-320 28-290 (641)
67 PLN02234 1-deoxy-D-xylulose-5- 99.9 3.8E-22 8.3E-27 214.0 12.4 216 79-323 85-331 (641)
68 PRK07064 hypothetical protein; 99.9 3.9E-22 8.4E-27 212.7 11.2 208 93-314 289-529 (544)
69 PRK08199 thiamine pyrophosphat 99.9 8E-22 1.7E-26 211.0 13.4 209 92-314 298-539 (557)
70 cd02007 TPP_DXS Thiamine pyrop 99.9 1.6E-21 3.5E-26 182.1 13.6 123 188-318 71-195 (195)
71 cd02015 TPP_AHAS Thiamine pyro 99.9 1.9E-21 4.2E-26 179.9 14.0 159 143-314 1-175 (186)
72 cd02014 TPP_POX Thiamine pyrop 99.9 2.4E-21 5.1E-26 178.2 14.4 158 143-314 2-174 (178)
73 cd02010 TPP_ALS Thiamine pyrop 99.9 2E-21 4.4E-26 178.6 13.5 157 145-314 1-171 (177)
74 TIGR03254 oxalate_oxc oxalyl-C 99.9 1.3E-21 2.7E-26 209.4 13.9 259 28-314 239-539 (554)
75 PRK08266 hypothetical protein; 99.9 1.3E-21 2.8E-26 208.6 13.5 214 92-318 287-530 (542)
76 PLN02582 1-deoxy-D-xylulose-5- 99.9 1E-21 2.3E-26 212.2 12.5 214 79-321 52-328 (677)
77 cd02003 TPP_IolD Thiamine pyro 99.9 3.7E-21 8.1E-26 180.9 14.5 156 147-315 3-186 (205)
78 cd02002 TPP_BFDC Thiamine pyro 99.9 5.1E-21 1.1E-25 175.4 14.1 156 143-312 1-178 (178)
79 TIGR03394 indol_phenyl_DC indo 99.9 4.1E-21 8.8E-26 204.7 15.3 262 28-314 234-522 (535)
80 cd02005 TPP_PDC_IPDC Thiamine 99.9 1.1E-20 2.5E-25 174.6 15.8 161 142-314 1-175 (183)
81 TIGR00232 tktlase_bact transke 99.8 4.4E-20 9.6E-25 200.5 21.7 129 186-319 104-248 (653)
82 PRK07092 benzoylformate decarb 99.8 5.5E-21 1.2E-25 203.4 14.0 207 92-312 298-529 (530)
83 PRK05899 transketolase; Review 99.8 1.3E-20 2.8E-25 204.1 16.7 146 187-337 113-276 (624)
84 PTZ00089 transketolase; Provis 99.8 1.7E-20 3.8E-25 203.9 17.5 148 187-338 111-277 (661)
85 PRK12754 transketolase; Review 99.8 7.9E-20 1.7E-24 197.8 21.9 130 186-319 108-252 (663)
86 PRK09259 putative oxalyl-CoA d 99.8 9E-21 1.9E-25 203.4 12.8 211 91-314 297-547 (569)
87 PRK12753 transketolase; Review 99.8 5E-20 1.1E-24 200.1 17.2 131 186-320 108-253 (663)
88 PLN02790 transketolase 99.8 2.8E-20 6.1E-25 202.0 15.2 130 187-320 100-245 (654)
89 PRK05444 1-deoxy-D-xylulose-5- 99.8 1.2E-20 2.6E-25 202.8 11.5 130 187-320 112-249 (580)
90 cd02009 TPP_SHCHC_synthase Thi 99.8 8.2E-20 1.8E-24 167.6 13.2 154 146-312 4-174 (175)
91 PRK06163 hypothetical protein; 99.8 3.3E-19 7.1E-24 167.4 17.6 169 142-335 12-190 (202)
92 PRK12474 hypothetical protein; 99.8 8.7E-20 1.9E-24 193.8 14.5 158 141-312 339-518 (518)
93 PRK07449 2-succinyl-5-enolpyru 99.8 6.5E-20 1.4E-24 196.6 12.2 256 21-313 258-549 (568)
94 COG3959 Transketolase, N-termi 99.8 3E-19 6.4E-24 166.0 14.1 127 186-315 113-243 (243)
95 PRK07586 hypothetical protein; 99.8 3.2E-19 7E-24 189.1 14.6 158 141-312 335-514 (514)
96 cd02001 TPP_ComE_PpyrDC Thiami 99.8 9.4E-19 2E-23 158.1 14.6 150 146-314 2-156 (157)
97 TIGR03846 sulfopy_beta sulfopy 99.8 1.8E-18 4E-23 159.7 16.8 151 146-315 2-158 (181)
98 KOG1185|consensus 99.8 1E-18 2.2E-23 177.3 14.6 260 29-314 251-561 (571)
99 cd03371 TPP_PpyrDC Thiamine py 99.8 4.3E-18 9.2E-23 158.2 17.3 172 147-334 3-181 (188)
100 PF00456 Transketolase_N: Tran 99.8 8.3E-19 1.8E-23 175.9 13.4 131 186-320 105-250 (332)
101 cd00568 TPP_enzymes Thiamine p 99.8 2.1E-18 4.6E-23 155.6 13.2 151 148-312 2-168 (168)
102 cd03372 TPP_ComE Thiamine pyro 99.8 9E-18 2E-22 154.8 17.2 164 146-333 2-171 (179)
103 cd02017 TPP_E1_EcPDC_like Thia 99.8 8.4E-18 1.8E-22 169.8 16.1 130 187-319 113-323 (386)
104 cd02008 TPP_IOR_alpha Thiamine 99.8 8.1E-18 1.8E-22 154.8 14.6 148 147-312 14-176 (178)
105 cd03376 TPP_PFOR_porB_like Thi 99.7 3.3E-17 7.1E-22 157.3 16.3 165 146-320 14-207 (235)
106 cd03375 TPP_OGFOR Thiamine pyr 99.7 3E-17 6.4E-22 153.1 13.8 135 158-313 27-184 (193)
107 PF02775 TPP_enzyme_C: Thiamin 99.7 8.2E-18 1.8E-22 150.6 8.1 120 184-310 18-153 (153)
108 PRK09628 oorB 2-oxoglutarate-a 99.7 8.4E-17 1.8E-21 157.7 14.9 153 141-314 24-202 (277)
109 COG0021 TktA Transketolase [Ca 99.7 6E-16 1.3E-20 162.5 20.3 139 178-320 102-255 (663)
110 COG3960 Glyoxylate carboligase 99.7 2E-17 4.2E-22 161.5 8.0 218 93-320 296-563 (592)
111 cd02018 TPP_PFOR Thiamine pyro 99.7 2.7E-16 5.8E-21 151.3 14.9 157 147-314 15-204 (237)
112 PLN02980 2-oxoglutarate decarb 99.7 4.5E-17 9.7E-22 192.5 10.9 210 95-314 626-890 (1655)
113 KOG0451|consensus 99.7 3.8E-16 8.2E-21 160.0 14.0 194 191-386 283-497 (913)
114 PRK05778 2-oxoglutarate ferred 99.7 7.8E-16 1.7E-20 152.5 15.9 172 142-337 27-224 (301)
115 TIGR03297 Ppyr-DeCO2ase phosph 99.7 2.3E-15 4.9E-20 152.9 18.4 177 143-334 172-354 (361)
116 PRK11867 2-oxoglutarate ferred 99.6 3.1E-15 6.7E-20 147.4 14.6 145 148-313 28-202 (286)
117 PRK11869 2-oxoacid ferredoxin 99.6 1.3E-15 2.9E-20 149.2 11.8 114 194-313 59-193 (280)
118 COG0567 SucA 2-oxoglutarate de 99.6 4.3E-15 9.3E-20 161.3 16.2 191 191-383 298-500 (906)
119 KOG0450|consensus 99.6 8.1E-15 1.8E-19 153.4 17.3 192 191-383 374-576 (1017)
120 TIGR03186 AKGDH_not_PDH alpha- 99.6 7.3E-15 1.6E-19 161.8 17.5 131 187-320 184-395 (889)
121 TIGR00759 aceE pyruvate dehydr 99.6 8.5E-15 1.8E-19 159.8 17.7 130 187-319 184-394 (885)
122 KOG3461|consensus 99.6 1.8E-16 4E-21 133.0 2.9 67 50-117 64-131 (132)
123 TIGR02177 PorB_KorB 2-oxoacid: 99.6 6.8E-15 1.5E-19 144.7 13.9 117 190-313 48-186 (287)
124 KOG0523|consensus 99.6 5E-15 1.1E-19 154.0 13.1 126 189-318 115-246 (632)
125 PRK11866 2-oxoacid ferredoxin 99.6 3.1E-14 6.7E-19 139.7 14.1 114 194-313 58-192 (279)
126 cd02011 TPP_PK Thiamine pyroph 99.5 2.9E-14 6.4E-19 135.3 11.0 109 187-299 57-173 (227)
127 PRK13012 2-oxoacid dehydrogena 99.5 1.4E-13 2.9E-18 152.4 16.5 130 187-319 198-408 (896)
128 COG3961 Pyruvate decarboxylase 99.5 1.5E-13 3.3E-18 141.5 15.4 269 21-314 236-536 (557)
129 PRK11864 2-ketoisovalerate fer 99.5 7.2E-13 1.6E-17 130.9 18.9 176 194-379 72-296 (300)
130 COG3962 Acetolactate synthase 99.5 1.7E-13 3.6E-18 138.9 11.7 257 22-314 269-576 (617)
131 TIGR03336 IOR_alpha indolepyru 99.5 2.4E-13 5.3E-18 146.9 13.7 148 147-312 366-529 (595)
132 PRK09405 aceE pyruvate dehydro 99.5 8E-13 1.7E-17 145.9 16.6 129 187-318 190-399 (891)
133 PRK05261 putative phosphoketol 99.3 9E-12 2E-16 136.1 12.8 121 197-317 144-287 (785)
134 PRK11865 pyruvate ferredoxin o 99.1 6.8E-09 1.5E-13 102.8 19.9 213 147-374 28-294 (299)
135 KOG1184|consensus 98.8 4.2E-08 9.2E-13 101.4 13.8 161 141-313 365-539 (561)
136 COG2609 AceE Pyruvate dehydrog 98.1 5.3E-05 1.2E-09 81.2 14.7 106 211-319 219-397 (887)
137 COG1013 PorB Pyruvate:ferredox 98.1 7.1E-05 1.5E-09 74.4 13.7 107 196-313 75-204 (294)
138 smart00704 ZnF_CDGSH CDGSH-typ 98.0 1.9E-06 4.1E-11 59.3 1.2 34 67-101 3-36 (38)
139 PF09364 XFP_N: XFP N-terminal 97.8 0.00019 4.1E-09 72.3 11.2 101 194-296 139-248 (379)
140 COG4231 Indolepyruvate ferredo 97.7 8.3E-05 1.8E-09 79.3 8.2 107 197-310 430-551 (640)
141 TIGR00173 menD 2-succinyl-5-en 97.6 5.1E-05 1.1E-09 79.3 4.0 113 92-209 298-431 (432)
142 COG1165 MenD 2-succinyl-6-hydr 97.5 0.00025 5.4E-09 74.8 8.5 112 190-314 421-547 (566)
143 cd03377 TPP_PFOR_PNO Thiamine 97.3 0.0016 3.5E-08 66.2 10.8 94 214-313 152-267 (365)
144 PF09360 zf-CDGSH: Iron-bindin 97.0 0.00013 2.8E-09 50.2 -0.5 22 77-98 17-38 (38)
145 PRK09193 indolepyruvate ferred 96.7 0.0043 9.3E-08 71.7 8.6 110 196-310 482-614 (1165)
146 cd06586 TPP_enzyme_PYR Pyrimid 96.7 0.018 4E-07 50.7 10.9 105 195-310 46-152 (154)
147 PRK13030 2-oxoacid ferredoxin 96.7 0.0043 9.3E-08 71.8 8.3 110 196-310 469-600 (1159)
148 cd07035 TPP_PYR_POX_like Pyrim 96.6 0.025 5.4E-07 50.2 10.8 111 190-310 40-153 (155)
149 COG3369 Zinc finger domain con 96.4 0.00089 1.9E-08 52.5 -0.1 26 77-102 29-54 (78)
150 cd07039 TPP_PYR_POX Pyrimidine 96.2 0.1 2.3E-06 47.3 12.8 112 190-312 44-158 (164)
151 PRK13029 2-oxoacid ferredoxin 96.2 0.013 2.8E-07 67.8 8.2 110 196-310 496-628 (1186)
152 cd07034 TPP_PYR_PFOR_IOR-alpha 96.1 0.056 1.2E-06 48.3 10.4 102 196-310 53-158 (160)
153 TIGR02176 pyruv_ox_red pyruvat 95.6 0.077 1.7E-06 62.2 11.4 94 214-313 952-1067(1165)
154 TIGR03845 sulfopyru_alph sulfo 95.4 0.33 7E-06 43.9 12.5 103 196-311 46-153 (157)
155 COG3957 Phosphoketolase [Carbo 95.4 0.057 1.2E-06 58.8 8.4 91 195-289 153-254 (793)
156 cd07038 TPP_PYR_PDC_IPDC_like 94.9 0.33 7.1E-06 43.9 10.8 112 190-310 41-160 (162)
157 PF02776 TPP_enzyme_N: Thiamin 94.7 0.24 5.2E-06 45.0 9.5 114 187-312 42-161 (172)
158 cd07033 TPP_PYR_DXS_TK_like Py 93.1 1.1 2.3E-05 40.3 10.4 100 197-310 52-154 (156)
159 cd07037 TPP_PYR_MenD Pyrimidin 93.0 0.62 1.3E-05 42.3 8.8 115 187-311 38-161 (162)
160 KOG4605|consensus 92.7 0.059 1.3E-06 45.9 1.5 49 69-121 49-97 (129)
161 PRK08659 2-oxoglutarate ferred 92.4 1.1 2.3E-05 46.4 10.6 116 194-320 58-177 (376)
162 PRK07524 hypothetical protein; 92.3 1.8 3.9E-05 46.5 12.7 119 187-313 42-164 (535)
163 PRK11269 glyoxylate carboligas 91.4 1.6 3.6E-05 47.5 11.3 117 187-313 45-165 (591)
164 PRK07710 acetolactate synthase 91.3 2.3 5.1E-05 46.1 12.3 153 145-313 19-175 (571)
165 PRK07119 2-ketoisovalerate fer 91.1 1 2.2E-05 46.0 8.8 115 195-320 59-177 (352)
166 PRK06725 acetolactate synthase 91.1 2.3 5E-05 46.2 12.0 117 187-313 55-174 (570)
167 TIGR03297 Ppyr-DeCO2ase phosph 91.0 1.2 2.7E-05 45.6 9.3 109 194-311 36-151 (361)
168 PRK07525 sulfoacetaldehyde ace 90.9 3 6.4E-05 45.5 12.7 116 187-313 46-164 (588)
169 PRK08611 pyruvate oxidase; Pro 90.9 2.4 5.1E-05 46.1 11.9 117 187-313 46-164 (576)
170 TIGR03254 oxalate_oxc oxalyl-C 90.9 1.6 3.5E-05 47.1 10.5 119 187-313 43-164 (554)
171 PRK08978 acetolactate synthase 90.6 2.6 5.6E-05 45.4 11.8 116 187-313 41-160 (548)
172 COG0028 IlvB Thiamine pyrophos 90.6 2.1 4.6E-05 46.4 11.1 117 188-314 43-162 (550)
173 PRK07979 acetolactate synthase 90.4 2 4.3E-05 46.7 10.7 118 187-314 45-165 (574)
174 PRK06457 pyruvate dehydrogenas 90.3 2.8 6E-05 45.3 11.7 114 190-313 45-160 (549)
175 TIGR01504 glyox_carbo_lig glyo 90.3 2.8 6E-05 45.8 11.7 115 190-313 47-164 (588)
176 PRK08266 hypothetical protein; 90.2 3.7 8.1E-05 44.1 12.5 120 187-314 46-169 (542)
177 TIGR03457 sulphoacet_xsc sulfo 89.8 3.9 8.4E-05 44.5 12.4 116 187-313 42-160 (579)
178 PRK07064 hypothetical protein; 89.5 3.9 8.4E-05 44.0 12.0 118 188-313 45-166 (544)
179 TIGR00118 acolac_lg acetolacta 89.5 4.8 0.0001 43.5 12.7 116 187-313 42-161 (558)
180 PRK08322 acetolactate synthase 89.4 2.9 6.3E-05 45.0 10.9 117 187-313 41-160 (547)
181 PRK07789 acetolactate synthase 89.2 2.7 5.8E-05 46.1 10.6 116 187-313 72-191 (612)
182 PLN02470 acetolactate synthase 89.2 2.4 5.2E-05 46.2 10.2 116 187-313 54-173 (585)
183 PF01855 POR_N: Pyruvate flavo 89.1 1.1 2.3E-05 43.2 6.6 111 195-320 47-161 (230)
184 cd07036 TPP_PYR_E1-PDHc-beta_l 89.1 5.9 0.00013 36.1 11.2 105 190-309 48-164 (167)
185 PRK06456 acetolactate synthase 89.1 2.8 6.2E-05 45.4 10.6 117 187-313 46-165 (572)
186 PRK09259 putative oxalyl-CoA d 89.0 3.7 8E-05 44.5 11.5 119 187-313 50-171 (569)
187 PRK07418 acetolactate synthase 88.9 3.4 7.4E-05 45.3 11.3 115 188-313 64-182 (616)
188 PRK06276 acetolactate synthase 88.9 4.5 9.8E-05 44.0 12.1 116 187-313 41-160 (586)
189 PRK08199 thiamine pyrophosphat 88.7 4.9 0.00011 43.4 12.1 117 187-313 49-168 (557)
190 PRK09107 acetolactate synthase 88.6 2.7 5.8E-05 46.0 10.1 117 187-313 52-171 (595)
191 PRK08155 acetolactate synthase 88.6 3.2 6.8E-05 45.0 10.6 117 187-313 54-173 (564)
192 PRK07586 hypothetical protein; 88.6 3.6 7.8E-05 43.9 10.9 118 187-314 42-162 (514)
193 PRK06882 acetolactate synthase 88.2 3.6 7.9E-05 44.6 10.8 117 187-313 45-164 (574)
194 PRK06466 acetolactate synthase 88.1 4.4 9.4E-05 44.0 11.3 116 188-313 46-164 (574)
195 PRK05858 hypothetical protein; 88.0 5.6 0.00012 42.8 12.0 117 187-313 45-164 (542)
196 PRK06048 acetolactate synthase 87.9 6.1 0.00013 42.7 12.2 117 187-313 48-167 (561)
197 PRK09627 oorA 2-oxoglutarate-a 87.5 3.2 6.9E-05 42.9 9.3 114 195-320 58-176 (375)
198 PRK08979 acetolactate synthase 87.4 3.9 8.4E-05 44.4 10.4 117 187-313 45-164 (572)
199 TIGR03710 OAFO_sf 2-oxoacid:ac 87.4 3.3 7.2E-05 45.0 9.8 114 195-319 248-365 (562)
200 TIGR02418 acolac_catab acetola 87.2 7.1 0.00015 42.0 12.2 117 187-313 39-158 (539)
201 PRK08366 vorA 2-ketoisovalerat 87.1 3.7 8E-05 42.6 9.5 113 195-320 60-173 (390)
202 TIGR03394 indol_phenyl_DC indo 87.0 7.3 0.00016 42.0 12.1 119 187-313 41-165 (535)
203 PRK07282 acetolactate synthase 87.0 5.6 0.00012 43.2 11.3 116 187-313 51-170 (566)
204 PRK12474 hypothetical protein; 86.7 6.1 0.00013 42.3 11.3 118 187-314 46-166 (518)
205 PRK06112 acetolactate synthase 86.7 6.3 0.00014 42.8 11.5 116 188-313 53-171 (578)
206 PTZ00089 transketolase; Provis 86.5 4.9 0.00011 44.6 10.6 102 197-310 416-519 (661)
207 PRK08617 acetolactate synthase 86.2 5.8 0.00013 42.8 10.9 117 188-313 46-164 (552)
208 PLN02573 pyruvate decarboxylas 85.9 6.3 0.00014 42.9 11.0 118 187-313 57-182 (578)
209 TIGR00232 tktlase_bact transke 85.6 6.4 0.00014 43.7 11.0 102 197-310 409-512 (653)
210 PRK09622 porA pyruvate flavodo 85.3 5 0.00011 41.9 9.5 113 194-319 66-181 (407)
211 PRK11892 pyruvate dehydrogenas 85.0 12 0.00026 39.8 12.3 98 196-308 201-308 (464)
212 TIGR02720 pyruv_oxi_spxB pyruv 84.7 8.7 0.00019 41.8 11.4 116 187-313 41-159 (575)
213 KOG4605|consensus 84.6 0.56 1.2E-05 40.1 1.6 34 65-99 84-117 (129)
214 PF00205 TPP_enzyme_M: Thiamin 84.4 0.13 2.8E-06 44.8 -2.4 28 93-120 104-135 (137)
215 PRK08367 porA pyruvate ferredo 84.3 7.2 0.00016 40.6 10.1 113 195-320 61-176 (394)
216 PRK06154 hypothetical protein; 84.3 7.1 0.00015 42.4 10.5 90 216-313 85-176 (565)
217 PRK08273 thiamine pyrophosphat 84.1 6.7 0.00015 42.9 10.3 118 187-314 45-165 (597)
218 PRK06965 acetolactate synthase 83.6 12 0.00025 40.9 11.8 116 187-313 62-181 (587)
219 PRK06546 pyruvate dehydrogenas 82.9 10 0.00023 41.2 11.1 114 190-313 47-162 (578)
220 PRK08527 acetolactate synthase 82.7 11 0.00024 40.7 11.2 116 187-313 44-163 (563)
221 PRK08327 acetolactate synthase 82.6 7.9 0.00017 42.0 10.0 116 190-313 56-181 (569)
222 PF02779 Transket_pyr: Transke 82.4 12 0.00026 34.1 9.7 106 196-310 60-170 (178)
223 TIGR00173 menD 2-succinyl-5-en 82.2 5 0.00011 42.0 8.0 117 187-313 41-166 (432)
224 CHL00099 ilvB acetohydroxyacid 82.0 12 0.00026 40.8 11.2 113 190-313 57-173 (585)
225 PRK09124 pyruvate dehydrogenas 81.9 14 0.00031 40.0 11.6 113 188-313 45-162 (574)
226 TIGR00204 dxs 1-deoxy-D-xylulo 81.1 10 0.00022 41.8 10.2 101 196-310 364-467 (617)
227 PRK07092 benzoylformate decarb 80.9 12 0.00025 40.3 10.4 118 187-313 51-171 (530)
228 COG3958 Transketolase, C-termi 80.7 14 0.0003 36.9 9.9 111 186-310 50-165 (312)
229 PRK12753 transketolase; Review 79.8 13 0.00028 41.3 10.6 103 196-310 414-518 (663)
230 PLN02790 transketolase 79.1 14 0.00031 41.0 10.6 102 197-310 405-509 (654)
231 PRK12754 transketolase; Review 78.6 35 0.00076 38.0 13.4 103 196-310 414-518 (663)
232 PRK12571 1-deoxy-D-xylulose-5- 77.8 14 0.0003 41.0 10.0 100 197-311 374-477 (641)
233 PRK05899 transketolase; Review 77.0 18 0.00038 39.9 10.6 111 185-310 367-483 (624)
234 TIGR03336 IOR_alpha indolepyru 75.6 16 0.00036 39.9 9.8 111 195-320 57-169 (595)
235 PLN02234 1-deoxy-D-xylulose-5- 75.5 16 0.00035 40.4 9.6 103 197-316 412-518 (641)
236 PLN02582 1-deoxy-D-xylulose-5- 75.0 23 0.0005 39.5 10.7 99 197-310 411-513 (677)
237 PRK05444 1-deoxy-D-xylulose-5- 74.8 19 0.00041 39.3 10.0 100 196-310 333-436 (580)
238 PLN02683 pyruvate dehydrogenas 74.6 24 0.00051 36.2 10.1 107 185-309 74-194 (356)
239 COG0674 PorA Pyruvate:ferredox 74.5 18 0.00039 37.2 9.2 109 194-314 57-167 (365)
240 COG4032 Predicted thiamine-pyr 69.6 16 0.00034 32.8 6.3 105 196-310 54-161 (172)
241 PRK09212 pyruvate dehydrogenas 69.5 64 0.0014 32.6 11.7 110 185-311 51-173 (327)
242 PLN02225 1-deoxy-D-xylulose-5- 67.5 44 0.00095 37.5 10.7 100 197-310 436-538 (701)
243 PTZ00182 3-methyl-2-oxobutanat 66.7 81 0.0018 32.3 11.9 96 197-308 95-201 (355)
244 COG0021 TktA Transketolase [Ca 66.0 20 0.00044 39.4 7.5 77 230-311 441-519 (663)
245 PRK12315 1-deoxy-D-xylulose-5- 64.7 48 0.001 36.3 10.4 100 197-310 333-434 (581)
246 PLN02980 2-oxoglutarate decarb 63.7 24 0.00051 43.6 8.5 113 190-312 345-466 (1655)
247 cd01460 vWA_midasin VWA_Midasi 63.4 1.1E+02 0.0025 30.1 11.7 82 215-297 166-257 (266)
248 smart00861 Transket_pyr Transk 60.6 93 0.002 27.7 10.0 99 197-309 62-163 (168)
249 PF09851 SHOCT: Short C-termin 59.7 18 0.00039 23.5 3.7 28 341-369 3-30 (31)
250 TIGR03393 indolpyr_decarb indo 59.4 69 0.0015 34.5 10.4 57 188-251 43-99 (539)
251 CHL00144 odpB pyruvate dehydro 59.1 1.3E+02 0.0028 30.5 11.6 108 186-309 52-171 (327)
252 PRK11032 hypothetical protein; 51.8 52 0.0011 30.0 6.6 43 343-385 30-72 (160)
253 COG1154 Dxs Deoxyxylulose-5-ph 41.9 1.5E+02 0.0032 32.7 9.2 104 192-310 364-473 (627)
254 TIGR01323 nitrile_alph nitrile 40.8 47 0.001 30.7 4.5 39 344-382 4-47 (185)
255 PRK13683 hypothetical protein; 39.9 44 0.00095 27.2 3.7 32 282-317 22-53 (87)
256 COG0777 AccD Acetyl-CoA carbox 38.9 68 0.0015 31.8 5.6 59 194-253 135-207 (294)
257 PRK07449 2-succinyl-5-enolpyru 38.6 1.1E+02 0.0025 32.9 8.0 58 187-250 50-107 (568)
258 PF05014 Nuc_deoxyrib_tr: Nucl 38.0 69 0.0015 26.6 5.0 39 214-253 63-101 (113)
259 COG1303 Uncharacterized protei 36.8 74 0.0016 29.0 5.1 44 266-312 23-66 (179)
260 KOG0369|consensus 36.5 78 0.0017 35.3 6.1 70 221-314 166-237 (1176)
261 TIGR02176 pyruv_ox_red pyruvat 34.9 2.5E+02 0.0055 33.6 10.5 113 195-319 62-175 (1165)
262 COG3453 Uncharacterized protei 34.4 1.1E+02 0.0023 26.8 5.5 46 264-312 43-96 (130)
263 PF01738 DLH: Dienelactone hyd 34.2 3.2E+02 0.007 24.9 9.4 92 194-324 100-194 (218)
264 PF04273 DUF442: Putative phos 34.0 96 0.0021 26.2 5.2 39 271-312 54-95 (110)
265 PF02979 NHase_alpha: Nitrile 32.7 82 0.0018 29.4 4.8 41 343-383 9-54 (188)
266 PF00205 TPP_enzyme_M: Thiamin 32.6 7.5 0.00016 33.6 -1.8 37 22-60 51-87 (137)
267 KOG1145|consensus 32.1 3.1E+02 0.0067 30.2 9.5 101 212-317 225-342 (683)
268 PRK13685 hypothetical protein; 32.1 5.3E+02 0.011 25.8 11.1 100 194-295 165-286 (326)
269 PF08640 U3_assoc_6: U3 small 30.4 1.2E+02 0.0026 24.4 4.9 41 349-394 10-50 (83)
270 cd00198 vWFA Von Willebrand fa 28.8 2.4E+02 0.0052 23.3 7.0 57 195-251 80-141 (161)
271 cd01452 VWA_26S_proteasome_sub 27.7 2.7E+02 0.0058 25.9 7.5 54 196-249 86-144 (187)
272 COG0498 ThrC Threonine synthas 26.9 1.7E+02 0.0037 30.7 6.7 84 196-296 111-194 (411)
273 cd01453 vWA_transcription_fact 26.6 4.9E+02 0.011 23.6 9.1 88 196-295 87-178 (183)
274 COG0532 InfB Translation initi 24.8 5.2E+02 0.011 28.0 9.8 102 213-319 80-198 (509)
275 TIGR00315 cdhB CO dehydrogenas 24.6 1.6E+02 0.0034 26.9 5.2 49 201-250 16-64 (162)
276 KOG4166|consensus 23.4 41 0.00089 35.4 1.3 42 23-65 328-369 (675)
277 cd05710 SIS_1 A subgroup of th 23.3 1.9E+02 0.0041 24.3 5.3 40 211-252 46-85 (120)
278 smart00327 VWA von Willebrand 23.3 3.4E+02 0.0074 23.2 7.2 58 194-251 80-144 (177)
279 PF10925 DUF2680: Protein of u 23.1 2E+02 0.0043 21.6 4.7 28 348-375 25-52 (59)
280 PF08312 cwf21: cwf21 domain; 23.0 2.2E+02 0.0047 20.4 4.6 31 343-374 13-43 (46)
281 PRK00414 gmhA phosphoheptose i 22.6 2.6E+02 0.0056 25.8 6.4 42 209-252 108-149 (192)
282 cd01450 vWFA_subfamily_ECM Von 22.1 3.7E+02 0.0079 22.6 7.0 57 195-251 80-142 (161)
283 cd05014 SIS_Kpsf KpsF-like pro 22.0 2.1E+02 0.0045 23.8 5.3 41 211-253 46-86 (128)
284 PF10415 FumaraseC_C: Fumarase 21.9 1E+02 0.0022 22.8 2.8 19 346-364 28-46 (55)
285 PF01380 SIS: SIS domain SIS d 21.6 1.6E+02 0.0035 24.4 4.5 40 211-252 52-91 (131)
286 PRK13938 phosphoheptose isomer 21.5 2.6E+02 0.0057 26.0 6.2 43 208-252 109-151 (196)
287 PLN02522 ATP citrate (pro-S)-l 21.4 4.6E+02 0.01 29.1 8.9 85 211-300 220-318 (608)
288 cd08325 CARD_CASP1-like Caspas 21.3 1.6E+02 0.0034 23.6 4.1 38 340-377 15-52 (83)
289 PF07295 DUF1451: Protein of u 21.3 2.1E+02 0.0045 25.7 5.2 41 341-381 18-58 (146)
290 PF13519 VWA_2: von Willebrand 21.0 2.2E+02 0.0048 24.2 5.5 88 196-294 81-171 (172)
291 cd00640 Trp-synth-beta_II Tryp 20.9 6.9E+02 0.015 23.3 9.4 37 235-282 67-104 (244)
292 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.8 2.3E+02 0.0049 23.5 5.3 40 211-252 45-84 (126)
293 PRK08558 adenine phosphoribosy 20.7 7.6E+02 0.016 23.7 9.5 108 197-312 95-211 (238)
294 PRK13936 phosphoheptose isomer 20.7 2.3E+02 0.0049 26.2 5.7 42 209-252 108-149 (197)
295 cd05017 SIS_PGI_PMI_1 The memb 20.4 2.1E+02 0.0046 23.8 5.0 37 211-249 42-78 (119)
296 cd01467 vWA_BatA_type VWA BatA 20.3 3.4E+02 0.0073 23.8 6.6 57 195-251 83-142 (180)
297 PF07615 Ykof: YKOF-related Fa 20.2 3.5E+02 0.0076 21.5 5.9 37 278-315 41-77 (81)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-54 Score=432.25 Aligned_cols=265 Identities=36% Similarity=0.551 Sum_probs=221.3
Q ss_pred cccccccCCCC-----CCCHHHHHHHHHhhccCCeEEeCCCCccccccccccccccccCCeeeecCCC-CCCcHHHHHHH
Q psy4881 131 PNRSITYPTPS-----TMSDSQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQ-LVTVPLGVGIA 204 (423)
Q Consensus 131 ~~r~~~~~~~~-----~~~p~~vi~~l~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~-~g~l~~A~GaA 204 (423)
||....|+++. -+.+..++..+. .+.+....+.|..|+ +.....+ ++..++. ++|+|.|+|+|
T Consensus 81 D~i~~~YR~h~~~l~~G~~~~~~~a~~~--G~~~g~~kGr~~~~h--~~~~~~~-------~~~~~~iVg~Q~~~AaG~A 149 (358)
T COG1071 81 DWIFPTYRDHGHLLARGVPLKEIMAELL--GKATGPCKGRGGSMH--YSDKEKG-------FLGGSGIVGTQIPLAAGAA 149 (358)
T ss_pred CEeecccCccccceecCCCHHHHHHHHh--ccccCCCCCCCCccc--ccccccc-------cCCCCceecccccHHHHHH
Confidence 66655453332 255666654332 133344433444444 4433222 2223333 46799999999
Q ss_pred HHHHhcCCC-CEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhh--cCCCCeEEee
Q psy4881 205 LAAKYSGTK-GVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTR--GDYIPGIWVD 281 (423)
Q Consensus 205 ~a~k~~~~~-~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~--a~G~~~~~Vd 281 (423)
+|.|+++.+ ++++|++|||++++|.|||+||+|+.|+|||||||+||+|+||++..+++..+.++.| +||+|+++||
T Consensus 150 ~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VD 229 (358)
T COG1071 150 LALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVD 229 (358)
T ss_pred HHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEEC
Confidence 999999955 4999999999999999999999999999999999999999999777666665566644 5799999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHHHHHHHcCCCCHHHH
Q psy4881 282 GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEEL 361 (423)
Q Consensus 282 G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~ 361 (423)
|+|+.++++++++|+++||+++||+|||+.|||+.|||++|++++||+++|+++|+ .+|||.+++++|++.|++|++++
T Consensus 230 G~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~ 308 (358)
T COG1071 230 GNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEEL 308 (358)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999999999999999999988999999999998 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCccccccCC
Q psy4881 362 KKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIRGTT 407 (423)
Q Consensus 362 ~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~~~~~~~~ 407 (423)
++|+++++++|++|+++|+++|.|++++++++||++.++++.++..
T Consensus 309 ~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~ 354 (358)
T COG1071 309 EAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQRE 354 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccCChhHHHHHH
Confidence 9999999999999999999999999999999999999988876654
No 2
>KOG0225|consensus
Probab=100.00 E-value=1.1e-52 Score=405.27 Aligned_cols=248 Identities=55% Similarity=0.915 Sum_probs=226.5
Q ss_pred HHHHHHhhc-cCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccc
Q psy4881 148 VDKAIDKYV-KENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAAN 226 (423)
Q Consensus 148 vi~~l~~~~-~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~ 226 (423)
+...+.+++ +....+.+.|++|+ +++ .++| ..++++ ++|+|++.|+|+|.|+++.+.+++++.|||+.|
T Consensus 131 ~~~v~aEL~Gr~~Gc~kGKGGSMH--my~--k~Fy-GGnGIV-----GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaN 200 (394)
T KOG0225|consen 131 VREVLAELMGRQAGCSKGKGGSMH--MYA--KNFY-GGNGIV-----GAQIPLGAGIAFAQKYNREDAVCFALYGDGAAN 200 (394)
T ss_pred HHHHHHHHhccccccccCCCccee--eec--cccc-Ccccee-----ccCCCccccHHHHHHhccCCceEEEEecccccc
Confidence 344566777 45677777788887 333 2344 333344 568999999999999999999999999999999
Q ss_pred hhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 227 QGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 227 ~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
||++||++|+|+.|+||+||||+||.|||.++..+.+..++|++|+--+||++|||+|+.+|.+|.+.|.+++++++||.
T Consensus 201 QGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPi 280 (394)
T KOG0225|consen 201 QGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPI 280 (394)
T ss_pred chhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccCCCCceEECCcchhhHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999999999999999999999999999987799999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy4881 307 LLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVG 386 (423)
Q Consensus 307 lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~ 386 (423)
|+|+.|||+.|||+|||.+.||+.||+++.+++||||..++++|++.++.|++||++|+++++++|++++++|+++|+|+
T Consensus 281 lmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~ 360 (394)
T KOG0225|consen 281 LMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPE 360 (394)
T ss_pred EEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999889999999999998999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCcccccc
Q psy4881 387 LDELTGDIYAVPLETDIRG 405 (423)
Q Consensus 387 ~~~~~~~vy~~~~~~~~~~ 405 (423)
+++|+.|||...+...+++
T Consensus 361 ~~eL~~dvy~~~~~~~~~g 379 (394)
T KOG0225|consen 361 PSELFTDVYVKGTGFEIRG 379 (394)
T ss_pred HHHHHHHhhccCCCccccC
Confidence 9999999999988777665
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=2.4e-49 Score=399.77 Aligned_cols=243 Identities=48% Similarity=0.817 Sum_probs=213.3
Q ss_pred CCHHHHHHHHHhhc-cCCeEEeCCCCccccccccccccccccCCeeeecCCCC-CCcHHHHHHHHHHHhcCCCCEEEEEe
Q psy4881 143 MSDSQVDKAIDKYV-KENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQL-VTVPLGVGIALAAKYSGTKGVCFALY 220 (423)
Q Consensus 143 ~~p~~vi~~l~~~~-~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~-g~l~~A~GaA~a~k~~~~~~~vv~~~ 220 (423)
+.+..++. +++ +.+..+.+.|+.|+ +.....+ ++..++.+ +++|+|+|+|+|.|+++.+.+++|++
T Consensus 100 ~~~~~~~a---e~~g~~~g~~~GrggsmH--~~~~~~~-------~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~ 167 (362)
T PLN02269 100 GTVLEVFA---ELMGRKDGCSRGKGGSMH--FYKKDAN-------FYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALY 167 (362)
T ss_pred CCHHHHHH---HHcCCCCCCCCCCCCccc--ccchhcC-------ccccCchhhccccHHHHHHHHHHHhCCCCeEEEEE
Confidence 55666553 444 33444433445544 5443222 33334444 57999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhh
Q psy4881 221 GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCR 300 (423)
Q Consensus 221 GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar 300 (423)
|||++++|.|||+||+|+.|+||+||||+||+|+++++..++...+.++++++++++++|||+|+.++++++++|++++|
T Consensus 168 GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR 247 (362)
T PLN02269 168 GDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHAL 247 (362)
T ss_pred CCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888777788988999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4881 301 SDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKAR 380 (423)
Q Consensus 301 ~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~ 380 (423)
+ +||+|||+.|||++|||++|++..||+++|+++|++.+|||.+|+++|+++|++|++++++++++++++|++++++|+
T Consensus 248 ~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~ 326 (362)
T PLN02269 248 S-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAK 326 (362)
T ss_pred h-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999998778999999999975699999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhccccCC
Q psy4881 381 ADPEVGLDELTGDIYAVP 398 (423)
Q Consensus 381 ~~p~p~~~~~~~~vy~~~ 398 (423)
++|.|+++++|+|||+..
T Consensus 327 ~~p~P~~~~~~~~vy~~~ 344 (362)
T PLN02269 327 ESPMPDPSELFTNVYVKG 344 (362)
T ss_pred hCCCCCHHHHHhhcccCC
Confidence 999999999999999964
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=3.9e-48 Score=389.32 Aligned_cols=261 Identities=34% Similarity=0.557 Sum_probs=216.3
Q ss_pred cccCCCccccccccCCC-----CCCCHHHHHHHHHhhccCCeEEeCCCCccccccccccccccccCCeeeecCCCCC-Cc
Q psy4881 124 DKYTLPTPNRSITYPTP-----STMSDSQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLV-TV 197 (423)
Q Consensus 124 ~~~~~~~~~r~~~~~~~-----~~~~p~~vi~~l~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g-~l 197 (423)
...+...+|..-.|+.. .-+.|..++.++ +.+.+..+.+.|+.|+ +.... .+++..++.+| ++
T Consensus 66 ~~al~~~D~~~~~yR~~~~~la~G~~~~~~~ae~--~g~~~g~~~Gr~gs~H--~~~~~-------~~~~~~~g~lG~~l 134 (341)
T CHL00149 66 IKLLAETDYVCSTYRDHVHALSKGVPPKNVMAEL--FGKETGCSRGRGGSMH--IFSAP-------HNFLGGFAFIGEGI 134 (341)
T ss_pred HHhCCCCCEEEcccccHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCCcc--ccchh-------cCccCCChhhhccH
Confidence 33344456654433322 126677766544 2233444433444444 44321 22333345555 69
Q ss_pred HHHHHHHHHHHhcC-------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh
Q psy4881 198 PLGVGIALAAKYSG-------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT 270 (423)
Q Consensus 198 ~~A~GaA~a~k~~~-------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~ 270 (423)
|+|+|+|+|.|+.+ ++++|||++|||++++|.+||+||+|++|+||+||||+||+|+++++.+.+...+++++
T Consensus 135 p~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~ 214 (341)
T CHL00149 135 PIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHK 214 (341)
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHH
Confidence 99999999999886 68999999999999999999999999999999999999999999988766666678887
Q ss_pred --hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHHH
Q psy4881 271 --RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKD 348 (423)
Q Consensus 271 --~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~~ 348 (423)
++||+++++|||+|+.++++++++|++++|++++|+|||+.|||++||+.+|++ .||+++|++.|+ .+|||.+|++
T Consensus 215 ~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~ 292 (341)
T CHL00149 215 KAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPD-ELRSKQEKEAWV-ARDPIKKLKS 292 (341)
T ss_pred HHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCc-cCCCHHHHHHHh-cCCHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999987 599999999998 6999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccC
Q psy4881 349 KILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAV 397 (423)
Q Consensus 349 ~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~ 397 (423)
+|+++|++|++++++++++++++|++++++|+++|.|+++++|+|||++
T Consensus 293 ~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 341 (341)
T CHL00149 293 YIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFAD 341 (341)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999974
No 5
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1.3e-48 Score=386.79 Aligned_cols=199 Identities=44% Similarity=0.713 Sum_probs=179.9
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhh
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYY 269 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~ 269 (423)
++..++++|+|+|+|+|.|+.+.+.+++|++|||++++|.|||+||+|+.|+|||||||+||+|||+++..+++..++++
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~ 179 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIA 179 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSG
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchh
Confidence 34444569999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred h--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHH
Q psy4881 270 T--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLK 347 (423)
Q Consensus 270 ~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~ 347 (423)
. ++||+++++|||+|+.++++++++|++++|+++||+|||+.|||+.||+++|+++.||+++|++.|++.+|||.+++
T Consensus 180 ~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~ 259 (300)
T PF00676_consen 180 DRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFR 259 (300)
T ss_dssp GGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHH
T ss_pred hhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHH
Confidence 6 56899999999999999999999999999999999999999999999999998889999999998887789999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChh
Q psy4881 348 DKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLD 388 (423)
Q Consensus 348 ~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~ 388 (423)
++|+++|++|++++++|+++++++|++++++|+++|.|++|
T Consensus 260 ~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 260 RYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999986
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.6e-47 Score=381.53 Aligned_cols=205 Identities=52% Similarity=0.851 Sum_probs=194.6
Q ss_pred cCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchh
Q psy4881 190 VTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~ 268 (423)
.++.+| ++|+|+|+|+|.|+++++++|||++|||++++|.++|+||+|+.+++|+||||+||+||++++.++....++|
T Consensus 108 ~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~ 187 (315)
T TIGR03182 108 GHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDL 187 (315)
T ss_pred CcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCH
Confidence 445555 6999999999999999999999999999999999999999999999999999999999999988777667788
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHH
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSL 346 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~ 346 (423)
++ ++||+++++|||+|+.++++++++|++++|+++||+|||+.|||++||+++|++ .||+++|++.|+ ++|||.+|
T Consensus 188 a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~-~Yr~~~e~~~~~-~~dPi~~~ 265 (315)
T TIGR03182 188 YKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPA-KYRSKEEVEEWR-KRDPIEKL 265 (315)
T ss_pred HHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCcc-ccCCHHHHHHHH-hcCHHHHH
Confidence 87 568999999999999999999999999999999999999999999999999988 599999999998 69999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcccc
Q psy4881 347 KDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYA 396 (423)
Q Consensus 347 ~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~ 396 (423)
+++|+++|+++++++++++++++++|++++++|+++|.|+++++|+|||+
T Consensus 266 ~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 266 KARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999996
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=4.5e-47 Score=382.07 Aligned_cols=216 Identities=29% Similarity=0.469 Sum_probs=202.0
Q ss_pred cCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchh
Q psy4881 190 VTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~ 268 (423)
.++.+| ++|.|+|+|+|.|+++++++|||++|||++++|.++|+||+|++|+||+||||+||+|+++++.......++|
T Consensus 120 ~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~ 199 (341)
T TIGR03181 120 PNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTL 199 (341)
T ss_pred CCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCH
Confidence 444444 6999999999999999999999999999999999999999999999999999999999988876665566788
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHH
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSL 346 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~ 346 (423)
++ ++||+++++|||+|..++++++++|++++|+++||+|||+.|||+.||+.+|++..||+++|++.|+ ++|||.+|
T Consensus 200 ~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~ 278 (341)
T TIGR03181 200 AQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRL 278 (341)
T ss_pred HHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHH
Confidence 87 5689999999999999999999999999999999999999999999999999887899999999998 59999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCccccccC
Q psy4881 347 KDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIRGT 406 (423)
Q Consensus 347 ~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~~~~~~~ 406 (423)
+++|+++|++|++++++|+++++++|++++++|+++|.|+++++++|||++.++++.+++
T Consensus 279 ~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~~~~~~~~~ 338 (341)
T TIGR03181 279 RKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELPPELEEQR 338 (341)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888876653
No 8
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=2.5e-46 Score=384.80 Aligned_cols=269 Identities=30% Similarity=0.510 Sum_probs=218.9
Q ss_pred CccchhhcccCCCccccccccCCC-----CCCCHHHHHHHHHhhccCCeEEeCCCCccccccccccccccccCCeeeecC
Q psy4881 117 TFPDYVLDKYTLPTPNRSITYPTP-----STMSDSQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVT 191 (423)
Q Consensus 117 ~vl~~~l~~~~~~~~~r~~~~~~~-----~~~~p~~vi~~l~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~s 191 (423)
+...+.+....+..||....|+.. ..+.|..++.++- .+.+......|+.|+ +.....+ +...+
T Consensus 125 EA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~--Gk~~g~~~GrggsmH--~~~~~~~-------~~g~~ 193 (433)
T PLN02374 125 EAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELF--GKATGCCRGQGGSMH--MFSKEHN-------LLGGF 193 (433)
T ss_pred HHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHc--CCCCCCCCCCCCcCc--cCchhhC-------CCCCc
Confidence 334444444455566665444332 1256666654432 123333222344444 4332222 22233
Q ss_pred CCCC-CcHHHHHHHHHHHhcC-------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccccccccccc
Q psy4881 192 NQLV-TVPLGVGIALAAKYSG-------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERAS 263 (423)
Q Consensus 192 g~~g-~l~~A~GaA~a~k~~~-------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~ 263 (423)
+.+| ++|.|+|+|+|.|+++ ++++|||++|||++++|.|||+||+|+.|+|||||||+||+|+++++...+.
T Consensus 194 g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t 273 (433)
T PLN02374 194 AFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT 273 (433)
T ss_pred eeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeecc
Confidence 3444 6999999999999985 5899999999999999999999999999999999999999999988777766
Q ss_pred CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCC
Q psy4881 264 ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRD 341 (423)
Q Consensus 264 ~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~D 341 (423)
..+++++ ++||+++++|||+|+.++++++++|++++|+++||+|||+.|||++||+.+|++ .||+++|++.|+ .+|
T Consensus 274 ~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~D 351 (433)
T PLN02374 274 SDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARD 351 (433)
T ss_pred CCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCC
Confidence 6778887 568999999999999999999999999999999999999999999999999987 599999999998 699
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCC
Q psy4881 342 PISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVP 398 (423)
Q Consensus 342 Pi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~ 398 (423)
||.+++++|+++|++|++++++|+++++++|++++++|+++|.|+++++|++||++.
T Consensus 352 Pi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 352 PIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 999999999999999999999999999999999999999999999999999999975
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=8.4e-43 Score=344.60 Aligned_cols=192 Identities=45% Similarity=0.746 Sum_probs=178.3
Q ss_pred eeecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCC
Q psy4881 187 LVTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
+...+|.+| ++|+|+|+|+|.|+++++++|||++|||++++|.++|+|++|++++||+||||+||+|+++++.+.....
T Consensus 99 ~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~ 178 (293)
T cd02000 99 FFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAG 178 (293)
T ss_pred ccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCC
Confidence 333455555 6999999999999999999999999999999999999999999999999999999999999987766666
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChH
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPI 343 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi 343 (423)
+++++ +++|+++++|||+|++++++++++|++++|++++|+|||+.|+|.+||+++|+++.||+++|++.|+ .+||+
T Consensus 179 ~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi 257 (293)
T cd02000 179 TSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPI 257 (293)
T ss_pred ccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHH
Confidence 78887 5689999999999999999999999999999999999999999999999888888899999999997 69999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4881 344 SSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKA 379 (423)
Q Consensus 344 ~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A 379 (423)
.+|+++|+++|++|++++++++++++++|++++++|
T Consensus 258 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 258 LRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998875
No 10
>KOG1182|consensus
Probab=100.00 E-value=1.9e-42 Score=331.55 Aligned_cols=234 Identities=28% Similarity=0.414 Sum_probs=211.7
Q ss_pred CCCccccccccccccccccCCeeeecC-CCCCCcHHHHHHHHHHHhcCCC-CEEEEEeCCCccchhhHHHHHHHhHhcCC
Q psy4881 165 SDENMTNQLVTVTNQLVTVTNQLVTVT-NQLVTVPLGVGIALAAKYSGTK-GVCFALYGDGAANQGQVFEVYNIAKLWNI 242 (423)
Q Consensus 165 ~g~~~~~~~~~~~~~~~~~~~~~~~~s-g~~g~l~~A~GaA~a~k~~~~~-~~vv~~~GDGa~~~G~~~EaLn~A~~~~L 242 (423)
.|.||..||.+...+ +++.| ...++||.|+|+|++.|+...+ +.+||++|||+.++|.+|.+||+|+....
T Consensus 173 kGrQMPvHyGs~eln-------f~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~ 245 (432)
T KOG1182|consen 173 KGRQMPVHYGSKELN-------FVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLEC 245 (432)
T ss_pred cccccccccCccccc-------eEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCC
Confidence 477887777764433 44444 4446799999999999987665 89999999999999999999999999999
Q ss_pred CEEEEEecCCcccccccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 243 PCIFVCENNGYGMGTSSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 243 Pvi~Vv~NN~~gi~~~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
|+||+|-||+|+||++...+..+..++. .|||+..+||||||+.+++.|+++|.+.|....+|+|||.+|||...||+
T Consensus 246 Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHST 325 (432)
T KOG1182|consen 246 PVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHST 325 (432)
T ss_pred CEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccC
Confidence 9999999999999999987766554544 57899999999999999999999999999998999999999999999999
Q ss_pred CCCCCCcCChhHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCc
Q psy4881 321 SDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLE 400 (423)
Q Consensus 321 ~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~ 400 (423)
|||.+.||+.+|++.|...+.||.|||+|+..+|+|+++.-.+++++++++|-++++.|++-+.|.+.++|.+||...|.
T Consensus 326 SDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~ 405 (432)
T KOG1182|consen 326 SDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPK 405 (432)
T ss_pred CCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhH
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccc
Q psy4881 401 TDIRG 405 (423)
Q Consensus 401 ~~~~~ 405 (423)
.+.++
T Consensus 406 ~L~eq 410 (432)
T KOG1182|consen 406 NLREQ 410 (432)
T ss_pred hHHHH
Confidence 77654
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.5e-37 Score=342.24 Aligned_cols=203 Identities=20% Similarity=0.227 Sum_probs=184.1
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCC------CEEEEEeCCCcc-chhhHHHHHHHhHhcCCC---EEEEEecCCccccccc
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTK------GVCFALYGDGAA-NQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGTSS 259 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~------~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~~~ 259 (423)
.|+...+.|+|+|+|+|.|+++.+ .++|+++||||+ ++|.|||+||+|+.|++| +||||+||+||++++.
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~ 392 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSP 392 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCH
Confidence 356566799999999999999877 799999999998 899999999999999998 9999999999999988
Q ss_pred ccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHH
Q psy4881 260 ERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR 337 (423)
Q Consensus 260 ~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~ 337 (423)
....+.....+ ++||+|+++|||+|+++|+.|++.|++++|+++||+|||+.|||++||+++|++. ||+++|++.|+
T Consensus 393 ~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~ 471 (924)
T PRK09404 393 PDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIK 471 (924)
T ss_pred HHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHH
Confidence 76655554554 5679999999999999999999999999999999999999999999999999985 99999999998
Q ss_pred hcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcccc
Q psy4881 338 QTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYA 396 (423)
Q Consensus 338 ~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~ 396 (423)
+.+||+.+|+++|+++|++|++++++|+++++++|++|+++|++. .+++.+..+|+
T Consensus 472 ~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~ 527 (924)
T PRK09404 472 KHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS 527 (924)
T ss_pred hcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---Ccccccccccc
Confidence 678999999999999999999999999999999999999999976 24455555554
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.9e-36 Score=332.26 Aligned_cols=197 Identities=22% Similarity=0.233 Sum_probs=177.9
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCC------CCEEEEEeCCCcc-chhhHHHHHHHhHhcCCCE---EEEEecCCccccccc
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGT------KGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPC---IFVCENNGYGMGTSS 259 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~------~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPv---i~Vv~NN~~gi~~~~ 259 (423)
.|+.....|+++|+|.|.|+++. +.++||++||||+ ++|.|||+||+|+.|++|+ ||||+||+||++++.
T Consensus 314 pSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~ 393 (929)
T TIGR00239 314 PSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNP 393 (929)
T ss_pred CcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcH
Confidence 46666789999999999999865 5789999999996 8999999999999999997 999999999999976
Q ss_pred ccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHH
Q psy4881 260 ERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR 337 (423)
Q Consensus 260 ~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~ 337 (423)
....+.+...+ ++||+|+++|||+|+++++.+++.|++++|+++||+|||+.|||++||+++|+++.||+ +|++.|+
T Consensus 394 ~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~ 472 (929)
T TIGR00239 394 LDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIK 472 (929)
T ss_pred HHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHH
Confidence 65555544444 56799999999999999999999999999999999999999999999999999977887 7888887
Q ss_pred hcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Q psy4881 338 QTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGL 387 (423)
Q Consensus 338 ~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~ 387 (423)
+.+||+.+|+++|+++|++|++++++|+++++++|++|++.+.+.+.|..
T Consensus 473 ~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~ 522 (929)
T TIGR00239 473 KHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNT 522 (929)
T ss_pred hCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 67899999999999999999999999999999999999999987665543
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.97 E-value=2.9e-31 Score=256.51 Aligned_cols=142 Identities=24% Similarity=0.250 Sum_probs=129.4
Q ss_pred cCCCCCCcHHHHHHHHHHHhcC-----CCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCC---EEEEEecCCcccccccc
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSG-----TKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGTSSE 260 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~~~~ 260 (423)
.|+..+++|+|+|+|+|.|+++ .+.++||++||||+ ++|.|||+||+|+.|++| +||||+||+||++++..
T Consensus 112 pS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~ 191 (265)
T cd02016 112 PSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPR 191 (265)
T ss_pred CcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHH
Confidence 4666778999999999999998 47899999999995 799999999999999999 99999999999999988
Q ss_pred cccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhH
Q psy4881 261 RASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDE 332 (423)
Q Consensus 261 ~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e 332 (423)
++.+.+..++ ++||+|+++|||+|++++++++++|++++|+++||+|||+.|||++||+++|+++ |++|..
T Consensus 192 ~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~p~-~t~p~m 264 (265)
T cd02016 192 DSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPS-FTQPLM 264 (265)
T ss_pred HhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCCcc-ccCCCc
Confidence 7776666665 4679999999999999999999999999999999999999999999999999984 887753
No 14
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1.2e-30 Score=277.48 Aligned_cols=261 Identities=17% Similarity=0.158 Sum_probs=200.9
Q ss_pred ccccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCcccc
Q psy4881 21 TCYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKY 99 (423)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~ 99 (423)
.++|.+| |+++|++++++...+++..+++|.++.++.+ |+.-. .+ ...| +.-..+|++
T Consensus 239 g~~p~~h--p~~lG~~g~~g~~~a~~~~~~aDlll~vG~r---------f~~~~---------~~-~~~f~~~~~ii~iD 297 (550)
T COG0028 239 GAVPEDH--PLSLGMLGMHGTKAANEALEEADLLLAVGAR---------FDDRV---------TG-YSGFAPPAAIIHID 297 (550)
T ss_pred ccCCCCC--ccccccccccccHHHHHHhhcCCEEEEecCC---------Ccccc---------cc-hhhhCCcCCEEEEe
Confidence 4688888 8999999999888888888888888888877 76211 11 1223 221278999
Q ss_pred ccc-cccCcc---cceeecCCCccchhhcccCC-Cccccc-------cc----c--CCCCCCCHHHHHHHHHhhccC-Ce
Q psy4881 100 HNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-PTPNRS-------IT----Y--PTPSTMSDSQVDKAIDKYVKE-NE 160 (423)
Q Consensus 100 ~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-~~~~r~-------~~----~--~~~~~~~p~~vi~~l~~~~~~-~~ 160 (423)
+|| +++++. .+|++|++.+++.++..... ...|.. .+ . ......+|+++++.+++++++ .+
T Consensus 298 idp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~dai 377 (550)
T COG0028 298 IDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAI 377 (550)
T ss_pred CChHHhCCCCCCCeeEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeE
Confidence 999 799876 49999999999888765433 234431 11 1 112224799999999999985 57
Q ss_pred EEeC-CCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHh
Q psy4881 161 YSQD-SDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKL 239 (423)
Q Consensus 161 ~~~d-~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~ 239 (423)
+++| ++++||. .++.+++ .++.++ +|+++|+||+|+|+|+|+|++.|+++|||++|||+|+|. .++|.||++
T Consensus 378 v~~d~G~~~~w~---a~~~~~~-~p~~~~-~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~--~qEL~Ta~r 450 (550)
T COG0028 378 VVTDVGQHQMWA---ARYFDFY-RPRRFL-TSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMN--GQELETAVR 450 (550)
T ss_pred EEeCCcHHHHHH---HHhcccC-CCCcEE-cCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhcc--HHHHHHHHH
Confidence 8888 5678882 2223333 344444 789999999999999999999999999999999999995 355999999
Q ss_pred cCCCEEEEEecCC-cccccccccccCC---------ch-hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 240 WNIPCIFVCENNG-YGMGTSSERASAS---------VD-YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 240 ~~LPvi~Vv~NN~-~gi~~~~~~~~~~---------~~-~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
+++|+++||+||+ |||.++++..... +. |.+ ++||+++++|+ +++++.+++++|+ +.++|+
T Consensus 451 ~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~ 524 (550)
T COG0028 451 YGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPV 524 (550)
T ss_pred hCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCE
Confidence 9999999999998 5999888743221 12 776 78999999999 8999999999998 478999
Q ss_pred EEEEEEecC
Q psy4881 307 LLETATYRY 315 (423)
Q Consensus 307 lIev~t~R~ 315 (423)
||||.+.+.
T Consensus 525 lidv~id~~ 533 (550)
T COG0028 525 LIDVVVDPE 533 (550)
T ss_pred EEEEEecCc
Confidence 999999875
No 15
>KOG4166|consensus
Probab=99.96 E-value=2.3e-30 Score=257.19 Aligned_cols=259 Identities=18% Similarity=0.129 Sum_probs=200.5
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccC------
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCD------ 94 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cd------ 94 (423)
.||.+| ||.+.||++||..++|++.+++|.++.+++| ||. +.++....| |-+.
T Consensus 339 s~d~~d--~lSLhMLGMHG~~yAN~Avq~aDLilA~GvR---------FDD---------RVTGn~s~FAp~Ar~aaae~ 398 (675)
T KOG4166|consen 339 SYDCDD--ELSLHMLGMHGTVYANYAVQHADLILAFGVR---------FDD---------RVTGNLSAFAPRARRAAAEG 398 (675)
T ss_pred CcCCCC--chhhhhhcccccceehhhhhccceeEEecce---------ecc---------ccccchhhhChhhhhhhhcc
Confidence 578888 8888888888888888888888888888777 883 334444444 3333
Q ss_pred ---Cccccccc-cccCccc---ceeecCCCccchhhcc--cC---CCccccc-------cc---cC---CCCCCCHHHHH
Q psy4881 95 ---NSHKYHNK-FHKDNVG---PLIIDGNTFPDYVLDK--YT---LPTPNRS-------IT---YP---TPSTMSDSQVD 149 (423)
Q Consensus 95 ---g~H~~~~~-~~g~nvg---pl~~d~~~vl~~~l~~--~~---~~~~~r~-------~~---~~---~~~~~~p~~vi 149 (423)
++|++++| ++|+++. .+.+|++..|+.+... .+ ..-+|+. ++ +. ..+.++||.++
T Consensus 399 rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vI 478 (675)
T KOG4166|consen 399 RGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVI 478 (675)
T ss_pred cCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHH
Confidence 57999999 7999996 5778888877765432 11 1224553 22 11 22459999999
Q ss_pred HHHHhhccC----CeEEeC-CCCccc-cccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 150 KAIDKYVKE----NEYSQD-SDENMT-NQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 150 ~~l~~~~~~----~~~~~d-~g~~~~-~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
+.|.+++.+ .+++|+ +++||| ++|++ ++.++.|+ +||++|+||+++++|+|+..++|+..||-+-||+
T Consensus 479 k~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~-----w~kP~~~~-tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDa 552 (675)
T KOG4166|consen 479 KVLDKLTDDTGRKVIITTGVGQHQMWAAQFYN-----WKKPRQWL-TSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDA 552 (675)
T ss_pred HHHHHhccCcCceEEEeccccHHHHHHHHHhc-----ccCcccee-ecCCccccccCcchhhcccccCcccEEEeccCCc
Confidence 999999853 356677 789999 44443 12334444 8999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhHhcCCCEEEEEecCCc-cccccccccc----------CCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 224 AANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERAS----------ASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 224 a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~----------~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
||.|. ..| |.++.+.++||.+++.||+- ||.++||... .+|+|.+ .|+|+++.||. .-+++.+
T Consensus 553 SF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~ 628 (675)
T KOG4166|consen 553 SFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLRE 628 (675)
T ss_pred eeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchheee--hHHHHHH
Confidence 99984 455 99999999999999999996 9999998422 2688887 46799999998 7889999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
.+++.+ +.+||+|+||.+..
T Consensus 629 k~kefl----sTkGPvLleV~v~~ 648 (675)
T KOG4166|consen 629 KIKEFL----STKGPVLLEVIVPH 648 (675)
T ss_pred HHHHHh----CCCCCeEEEEEccC
Confidence 999988 68999999999864
No 16
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.95 E-value=2.6e-28 Score=233.09 Aligned_cols=208 Identities=16% Similarity=0.169 Sum_probs=155.5
Q ss_pred chhhhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHH
Q psy4881 77 HTEAICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAID 153 (423)
Q Consensus 77 ~~~~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~ 153 (423)
+...+|.+.|..++ .+..|+|+ +.|+|.+++ +++||++|+.++++..| ++||.|. ++
T Consensus 17 eL~~La~eiR~~ii~~vs~~GGHl------~snLGvVEL------TiALH~vFd~p~DkivwDvGHQ~Y~--------HK 76 (270)
T PF13292_consen 17 ELEQLAQEIREFIIETVSKTGGHL------ASNLGVVEL------TIALHYVFDSPKDKIVWDVGHQAYV--------HK 76 (270)
T ss_dssp GHHHHHHHHHHHHHHHCTCCCSTH------HHHHCCHHH------HHHHHHHS-TTTSEEEESSSTT-HH--------HH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC------CCCccHHHH------HHHHHHHhCCCCCeEEEecccccch--------hh
Confidence 34589999999988 77999998 999999876 99999999999999999 6999998 88
Q ss_pred hhc-cCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 154 KYV-KENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 154 ~~~-~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
.+| |.+.|.|..+..-.++|+.+.++.||.+. ++++++++++|+|+|.|+++.+++..||+++||||++.|+.+|
T Consensus 77 iLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~----~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~E 152 (270)
T PF13292_consen 77 ILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFG----AGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFE 152 (270)
T ss_dssp HCTTTCCCGGGTTSTTS--SS--TTT-TT--S------SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHH
T ss_pred hccCcHHHhchhhhcCCcCCCCCcccCCCCccc----CCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHH
Confidence 888 56778777543333569999999988655 7888899999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEEecCCccccccccccc-------CCch--------------------hhh--------------h
Q psy4881 233 VYNIAKLWNIPCIFVCENNGYGMGTSSERAS-------ASVD--------------------YYT--------------R 271 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~-------~~~~--------------------~~~--------------~ 271 (423)
|||.|+..+-++|+|++||+++|+.++...+ ..+. +.+ +
T Consensus 153 ALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe 232 (270)
T PF13292_consen 153 ALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFE 232 (270)
T ss_dssp HHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CCCH
T ss_pred HHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHH
Confidence 9999999999999999999999998765211 0000 000 1
Q ss_pred cCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 272 GDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 272 a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
.+|+.++ +|||||.+++.++++++. +.+||+||||.|
T Consensus 233 ~LG~~Y~GPiDGHdl~~Li~~l~~~K----~~~gPvllHV~T 270 (270)
T PF13292_consen 233 ELGFDYIGPIDGHDLEELIEVLENAK----DIDGPVLLHVIT 270 (270)
T ss_dssp HCT-EEEEEEETT-HHHHHHHHHHHC----CSSSEEEEEEE-
T ss_pred HcCCeEEeccCCCCHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 2255554 999999999999888776 579999999987
No 17
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.95 E-value=2.3e-27 Score=246.29 Aligned_cols=216 Identities=16% Similarity=0.146 Sum_probs=180.7
Q ss_pred hhhhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHh
Q psy4881 78 TEAICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDK 154 (423)
Q Consensus 78 ~~~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~ 154 (423)
..++|.+.|..++ .+..|+|+ |.|+|.+++ +++||++|+.++++..| ++||+|. ++.
T Consensus 22 L~~La~EiR~~li~~vS~~GGHl------gsnLGvVEL------TiALH~VF~sP~D~~IwDVgHQaYp--------HKi 81 (627)
T COG1154 22 LPQLADEIREFLLEVVSATGGHL------GSNLGVVEL------TIALHYVFDSPKDKLIWDVGHQAYP--------HKI 81 (627)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc------CCCcChhhh------hHHHHHHhCCCCCCeEEecCcccch--------hHH
Confidence 3489999999988 77999998 999999976 99999999999999998 6999999 888
Q ss_pred hc-cCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH
Q psy4881 155 YV-KENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV 233 (423)
Q Consensus 155 ~~-~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea 233 (423)
+| |.+.|.+..+..-.++|.++.++.||.+. ++|+.+++++|+|+|.|+.++++++.||+++||||++.|+.+||
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~----~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EA 157 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFG----VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEA 157 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccc----cCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHH
Confidence 88 56788877543333568999999887644 78889999999999999999999999999999999999999999
Q ss_pred HHHhH-hcCCCEEEEEecCCccccccccccc-------CCc---------------------hhhh--------------
Q psy4881 234 YNIAK-LWNIPCIFVCENNGYGMGTSSERAS-------ASV---------------------DYYT-------------- 270 (423)
Q Consensus 234 Ln~A~-~~~LPvi~Vv~NN~~gi~~~~~~~~-------~~~---------------------~~~~-------------- 270 (423)
||.|+ ..+-|+|+|++||+++|+.++...+ ..+ .+.+
T Consensus 158 LN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~ 237 (627)
T COG1154 158 LNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGT 237 (627)
T ss_pred HhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchh
Confidence 99998 5568899999999999998876321 111 0001
Q ss_pred --hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCC
Q psy4881 271 --RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 321 (423)
Q Consensus 271 --~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~ 321 (423)
+.+|+.++ +|||||.+++..+++.+. +.+||+||||.|.+++|+..+
T Consensus 238 lFeelGf~YiGPiDGHni~~Li~~Lk~~k----d~~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 238 LFEELGFNYIGPIDGHNLEELIPTLKNAK----DLKGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred hHHHhCCeeECCcCCCCHHHHHHHHHHHh----cCCCCEEEEEEecCCCCCChh
Confidence 11255554 899999999999988877 579999999999999998754
No 18
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.93 E-value=1.5e-26 Score=248.86 Aligned_cols=215 Identities=16% Similarity=0.050 Sum_probs=158.5
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccC---------CCcccccc-------cc----CCCCCCCHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT---------LPTPNRSI-------TY----PTPSTMSDS 146 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~---------~~~~~r~~-------~~----~~~~~~~p~ 146 (423)
+.+..+|+++|+ +++++. .+|++|++.+++.++.... ....|... +. ....+++|+
T Consensus 293 ~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 372 (588)
T TIGR01504 293 EGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFDNVPVKPQ 372 (588)
T ss_pred CCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccccCCCCCcCHH
Confidence 445678999999 588876 4888999998877655321 11234211 11 122359999
Q ss_pred HHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
++++.+++.+++ .+++.|.|. ..| ...+.+.. .+++++ .++++|+||+++|+|+|++++.|+++||+++||||
T Consensus 373 ~~~~~l~~~l~~d~ivv~D~G~~~~~---~~~~~~~~-~p~~~~-~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~ 447 (588)
T TIGR01504 373 RVYEEMNKAFGRDVCYVTTIGLSQIA---GAQMLHVY-KPRHWI-NCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYD 447 (588)
T ss_pred HHHHHHHHhCCCCCEEEECCcHHHHH---HHHhcccc-CCCcEE-eCCccccccchHhHHHhhhhhCCCCcEEEEEcchH
Confidence 999999999975 577888654 334 22222222 234444 67778999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------c----------CCchhhh--hcCCCCeEEee
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------S----------ASVDYYT--RGDYIPGIWVD 281 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~----------~~~~~~~--~a~G~~~~~Vd 281 (423)
|++. . .+|.||++|++|+++||+||+ ||+.+..+.. . ..+||.+ +++|+++.+|+
T Consensus 448 f~m~-~-~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~ 525 (588)
T TIGR01504 448 FQFM-I-EELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF 525 (588)
T ss_pred hhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC
Confidence 9996 3 459999999999988888887 6876543321 0 1368887 78899999998
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 282 GMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 282 G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++++|.+++++|++.+++.++|+||||.+.+
T Consensus 526 --~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 526 --KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred --CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 8999999999998654446899999999954
No 19
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.93 E-value=8.8e-26 Score=242.00 Aligned_cols=213 Identities=18% Similarity=0.193 Sum_probs=160.8
Q ss_pred hhhhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHh
Q psy4881 78 TEAICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDK 154 (423)
Q Consensus 78 ~~~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~ 154 (423)
...+|.+.|..++ ....++|. +.++|.+.+ ++++++.|+.++++..| .+|+.+. +..
T Consensus 20 l~~l~~~ir~~~~~~~~~~~Gh~------~~~lg~vel------~~al~~~f~~~~D~ii~d~ghr~~~--------~~l 79 (581)
T PRK12315 20 LEQLASEIRTALLEKDSAHGGHV------GPNLGVVEL------TIALHYVFNSPKDKIVWDVSHQSYP--------HKM 79 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc------CcchhHHHH------HHHHHhhcCCCCCcEEEecCCchHH--------HHH
Confidence 3489999998887 44777898 888887554 88899999988887776 3666644 444
Q ss_pred hc-cCCeEEeC--CCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 155 YV-KENEYSQD--SDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 155 ~~-~~~~~~~d--~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
++ ++..+.+- .++. +++..+.++.++. +.+++.++++|+|+|+|+|.|+++.+.+|||++|||++++|.+|
T Consensus 80 ~~G~~~~~~~~~~~g~~--~G~~~~~~s~~~~----~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~ 153 (581)
T PRK12315 80 LTGRKEAFLDPDHYDDV--TGYTNPEESEHDF----FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLAL 153 (581)
T ss_pred HcCCccchhhHHHcCCC--CCCCCCCCCCCCC----cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHH
Confidence 44 22222222 2222 2234433333322 22456667899999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEEecCCcccccccccc---------cCCchhhh--hcCCCCeEEe-eCCCHHHHHHHHHHHHHHh
Q psy4881 232 EVYNIAKLWNIPCIFVCENNGYGMGTSSERA---------SASVDYYT--RGDYIPGIWV-DGMDILAVREAARFAVNHC 299 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~V-dG~d~~~v~~al~~A~~~a 299 (423)
|+||+|+.|++|+||||+||+|+++++.... +...+... ++||++++.| ||||++++.+++++|.
T Consensus 154 EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~--- 230 (581)
T PRK12315 154 EGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK--- 230 (581)
T ss_pred HHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH---
Confidence 9999999999999999999999999877422 11112222 6889999988 9999999999998875
Q ss_pred hCCCCcEEEEEEEecCCCCCC
Q psy4881 300 RSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 300 r~~~gP~lIev~t~R~~gH~~ 320 (423)
+++||++||++|+|++|+..
T Consensus 231 -~~~gP~~i~~~T~kG~G~~~ 250 (581)
T PRK12315 231 -DIDHPIVLHIHTLKGKGYQP 250 (581)
T ss_pred -hCCCCEEEEEEeecCCCCCh
Confidence 57899999999999999753
No 20
>PRK06154 hypothetical protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=238.91 Aligned_cols=261 Identities=16% Similarity=0.099 Sum_probs=177.5
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
+||.+| |+++|.++..++...+....++|.++-++.+ |+. . .+.. .+ +.+..+|+++
T Consensus 254 ~~~~~h--pl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~---------l~~--------~--~~~~-~~~~~~~vI~id~ 311 (565)
T PRK06154 254 AFPEDH--PLALGSGGRARPATVAHFLREADVLFGIGCS---------LTR--------S--YYGL-PMPEGKTIIHSTL 311 (565)
T ss_pred CCCCCC--ccccCCCCCCCcHHHHHHHHhCCEEEEECCC---------Ccc--------c--ccCc-cCCCCCeEEEEEC
Confidence 466666 6666665554444444444445554444433 441 0 1111 14 3467789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccCC--------Cccccc-----------cc----cCCCCCCCHHHHHHHHH
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--------PTPNRS-----------IT----YPTPSTMSDSQVDKAID 153 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--------~~~~r~-----------~~----~~~~~~~~p~~vi~~l~ 153 (423)
|+ +++++. .+|++|.+.+++.++..... ...|.. .+ .....+++|.++++.|+
T Consensus 312 d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~ 391 (565)
T PRK06154 312 DDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQ 391 (565)
T ss_pred CHHHhccccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHH
Confidence 99 578766 48899999888776543211 113321 11 01234699999999999
Q ss_pred hhcc-CC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhH
Q psy4881 154 KYVK-EN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQV 230 (423)
Q Consensus 154 ~~~~-~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~ 230 (423)
+.++ ++ +++.|.|. .+|. .++.+.. .+++++ .++++|+||+++|+|+|+|++.|+++|||++|||+|+|..
T Consensus 392 ~~l~~~d~iv~~D~G~~~~~~---~~~~~~~-~p~~~~-~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~- 465 (565)
T PRK06154 392 HAVDIKTVIITHDAGSPRDQL---SPFYVAS-RPGSYL-GWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTG- 465 (565)
T ss_pred HhcCCCCEEEEECCcccHHHH---HHhCCCC-CCCeEE-ccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccH-
Confidence 9985 45 56668554 4442 1111221 234454 5677899999999999999999999999999999999853
Q ss_pred HHHHHHhHhcCCCEEEEEecCC-cccccccccc-----c---CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHh
Q psy4881 231 FEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-----S---ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 231 ~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----~---~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~a 299 (423)
++|.||++++||+++||+||+ |++....+.. . ..+||.+ ++||+++++|+ +++++.+++++|++.+
T Consensus 466 -~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~ 542 (565)
T PRK06154 466 -MDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKV 542 (565)
T ss_pred -HHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhc
Confidence 459999999999999999888 6766543211 0 1368887 78899999999 8999999999998643
Q ss_pred hCCCCcEEEEEEEec
Q psy4881 300 RSDKGPILLETATYR 314 (423)
Q Consensus 300 r~~~gP~lIev~t~R 314 (423)
+ .++|+||||.+.+
T Consensus 543 ~-~~~p~lIev~v~~ 556 (565)
T PRK06154 543 K-EGTPALLEVITSE 556 (565)
T ss_pred c-CCCeEEEEEEeCh
Confidence 2 4689999999854
No 21
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=3.6e-25 Score=237.81 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=174.6
Q ss_pred hhhhhhhcccCCC--c-ccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHH
Q psy4881 78 TEAICRCWKSKKF--P-FCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAID 153 (423)
Q Consensus 78 ~~~~c~~~rs~~~--p-~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~ 153 (423)
...+|.+.|..++ . +..|+|+ +.|+|.+++ +++||++|+.++++..| ++||+|. ++
T Consensus 96 L~~La~EiR~~li~~v~s~~GGHl------~snLGvVEL------TvALH~VFd~p~DkiiwDvgHQ~Y~--------HK 155 (701)
T PLN02225 96 LKLLADEIRTELHSVLWKKTQKSM------NPSFAAIEL------TLALHYVFRAPVDNILWDAVEQTYA--------HK 155 (701)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCc------CCCccHHHH------HHHHHHHhCCCCCceeeccccccch--------hh
Confidence 3489999999988 5 5889998 999999987 99999999999999999 6999999 88
Q ss_pred hhc-cCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 154 KYV-KENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 154 ~~~-~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
.+| |.+.|.+ .+..-.++|.++.++.||.+. ++|+.+++++|+|+|.|+.++++++.||+++||||++.|+.+|
T Consensus 156 iLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~----~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~E 230 (701)
T PLN02225 156 VLTRRWSAIPS-RQKNGISGVTSQLESEYDSFG----TGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYE 230 (701)
T ss_pred HhcCChhhcCc-cccCCcCCCCCCCCCCCCCCC----CChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHH
Confidence 898 5566765 332223569999999998755 7888899999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEEecCCcccccc--------ccccc-------CC-----------------c----hhhh------
Q psy4881 233 VYNIAKLWNIPCIFVCENNGYGMGTS--------SERAS-------AS-----------------V----DYYT------ 270 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~~gi~~~--------~~~~~-------~~-----------------~----~~~~------ 270 (423)
|||.|+..+-++|+|++||+++|+.+ +...+ .+ + .+.+
T Consensus 231 aLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (701)
T PLN02225 231 AMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYA 310 (701)
T ss_pred HHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998 43110 00 0 0000
Q ss_pred ------------hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCC
Q psy4881 271 ------------RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 316 (423)
Q Consensus 271 ------------~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~ 316 (423)
+.+|+.++ +|||||++++.++|+++.+. ..+||+||||.|.+++
T Consensus 311 k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 311 RGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred hhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 12355554 99999999999999988742 2249999999999877
No 22
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.92 E-value=7.3e-25 Score=235.17 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=157.4
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---------Ccccc-------ccc---c-CCCCCCCHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPNR-------SIT---Y-PTPSTMSDS 146 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r-------~~~---~-~~~~~~~p~ 146 (423)
+....+|+++|+ +++++. .+|++|++.+++.++..... ...|. ... . .....++|.
T Consensus 296 ~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 375 (574)
T PRK07979 296 PNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQ 375 (574)
T ss_pred CCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHH
Confidence 445678999999 578765 48999999888776543221 12221 111 1 113459999
Q ss_pred HHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
++++.|++.+++ .+++.|.|. ..| ...+.+. +.++.++ +++++|+||+++|+|+|++++.|+++||+++|||+
T Consensus 376 ~~~~~l~~~l~~d~ivv~d~G~~~~~---~~~~~~~-~~p~~~~-~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~ 450 (574)
T PRK07979 376 AVIETLWRLTKGDAYVTSDVGQHQMF---AALYYPF-DKPRRWI-NSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS 450 (574)
T ss_pred HHHHHHHhhcCCCEEEEeCCcHHHHH---HHHhccc-CCCCeEE-eCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchh
Confidence 999999999875 567788654 444 2222222 1234444 67888999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------c-CCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------S-ASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~-~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
|++.. .+|.||++++||+++||.||+ |++.+..+.. . ..+||.+ +++|+++++|+ +++++.+
T Consensus 451 f~m~~--~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~ 526 (574)
T PRK07979 451 IQMNI--QELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELES 526 (574)
T ss_pred hhccH--HHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHH
Confidence 99853 459999999999999999888 5876543321 1 2368887 78999999998 8999999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++++|++.++ .++|+||||.+.+
T Consensus 527 al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 527 KLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHhccC-CCCcEEEEEEECC
Confidence 9999986433 3789999999965
No 23
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.92 E-value=5.5e-25 Score=237.96 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=156.3
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccCC------Ccccc-------ccc---c-CCCCCCCHHHHHH
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL------PTPNR-------SIT---Y-PTPSTMSDSQVDK 150 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~------~~~~r-------~~~---~-~~~~~~~p~~vi~ 150 (423)
..+.+|+++|+ +++++. .+|.+|++.+++.++..... ...|. ..+ . ....+++|+++++
T Consensus 315 ~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 394 (616)
T PRK07418 315 RAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLL 394 (616)
T ss_pred CCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHH
Confidence 35678999999 588765 48899999888776553311 12232 111 1 1234699999999
Q ss_pred HHHhhccCCeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhh
Q psy4881 151 AIDKYVKENEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQ 229 (423)
Q Consensus 151 ~l~~~~~~~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~ 229 (423)
++++.+++.+++.|.|. ..|. .++... .+++++ +++++|+||+|+|+|+|++++.|+++||+++|||+|+|.
T Consensus 395 ~l~~~~~d~i~~~D~G~~~~~~---~~~~~~--~p~~~~-~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~- 467 (616)
T PRK07418 395 AVRDLAPDAYYTTDVGQHQMWA---AQFLRN--GPRRWI-SSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMN- 467 (616)
T ss_pred HHHhhCCCcEEEECChHHHHHH---HHhhhc--CCCeEE-cCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhh-
Confidence 99999887788888554 4452 221121 233344 678889999999999999999999999999999999985
Q ss_pred HHHHHHHhHhcCCCEEEEEecCC-cccccccccc------c------CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHH
Q psy4881 230 VFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA------S------ASVDYYT--RGDYIPGIWVDGMDILAVREAARF 294 (423)
Q Consensus 230 ~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~------~------~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~ 294 (423)
..| |.||++|+||+++||.||+ |++.+..++. . ..+||.+ +++|+++++|+ ++++|.+++++
T Consensus 468 ~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~ 544 (616)
T PRK07418 468 IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAE 544 (616)
T ss_pred HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHH
Confidence 344 9999999999999999888 4876543321 0 2367877 78899999998 89999999988
Q ss_pred HHHHhhCCCCcEEEEEEEec
Q psy4881 295 AVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 295 A~~~ar~~~gP~lIev~t~R 314 (423)
|++ .++|+||||.+.+
T Consensus 545 a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 545 ALA----HDGPVLIDVHVRR 560 (616)
T ss_pred HHh----CCCCEEEEEEecC
Confidence 874 6789999999964
No 24
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.92 E-value=8e-25 Score=234.80 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=155.8
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCCC---------cccccc-------c----cCCCCCCCHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTLP---------TPNRSI-------T----YPTPSTMSDS 146 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~~---------~~~r~~-------~----~~~~~~~~p~ 146 (423)
+..+.+|+++|+ +++++. .+|++|++.+++.++...... .+|+.. + .....+++|.
T Consensus 296 ~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 375 (572)
T PRK08979 296 PNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAYDKSSERIKPQ 375 (572)
T ss_pred CCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhccCCCCCcCHH
Confidence 345578999999 577765 489999999887765432110 233211 1 0123468999
Q ss_pred HHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
++++.+++.+++ .+++.|.|. ..| ...+.... .+++++ .++++|+||+++|+|+|++++.|+++||+++|||+
T Consensus 376 ~~~~~l~~~l~~d~ivv~d~G~~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~ 450 (572)
T PRK08979 376 QVIETLYKLTNGDAYVASDVGQHQMF---AALYYPFD-KPRRWI-NSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGS 450 (572)
T ss_pred HHHHHHHHhcCCCeEEEECCcHHHHH---HHHhcCcC-CCCeEE-ccCCcccccchhhHHHhhhhhCCCCeEEEEEcchH
Confidence 999999999875 467788665 334 22222221 234454 67888999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------c-CCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------S-ASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~-~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
|++. . .+|.||+++++|+++||.||+ |++.+..++. . ..+||.+ +++|+++++|+ ++++|.+
T Consensus 451 f~m~-~-~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~ 526 (572)
T PRK08979 451 IQMN-I-QELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELES 526 (572)
T ss_pred hhcc-H-HHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHH
Confidence 9985 3 449999999999999888887 5876543321 1 2368887 78899999998 8999999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++++|++ ..++|+||||.+.+
T Consensus 527 al~~a~~---~~~~p~lIev~i~~ 547 (572)
T PRK08979 527 GLEKALA---MKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHh---cCCCcEEEEEEeCC
Confidence 9998884 13789999999965
No 25
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.92 E-value=7.6e-25 Score=235.29 Aligned_cols=268 Identities=15% Similarity=0.098 Sum_probs=180.9
Q ss_pred ccccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCCc-ccCCcccc
Q psy4881 21 TCYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFP-FCDNSHKY 99 (423)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p-~cdg~H~~ 99 (423)
.+||.+| |+++|++++.+....+....++|.++-++.+ ++. ....+ .+....++ .+..+|++
T Consensus 235 g~~p~~h--p~~~G~~g~~g~~~~~~~l~~aDlil~lG~~---------~~~-----~~~~~-~~~~~~~~~~~~~I~id 297 (579)
T TIGR03457 235 DSFPASH--PLWVGPLGYQGSKAAMKLISDADVVLALGTR---------LGP-----FGTLP-QYGIDYWPKNAKIIQVD 297 (579)
T ss_pred ccCCCCC--chhccCCcCcchHHHHHHHHhCCEEEEECCC---------Ccc-----ccccc-ccccccCCCCCeEEEEe
Confidence 3577777 7777777666655444444455554444433 431 00111 11222343 36778999
Q ss_pred ccc-cccCcc---cceeecCCCccchhhcccCC-----------------Cccccccc-------------------cCC
Q psy4881 100 HNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-----------------PTPNRSIT-------------------YPT 139 (423)
Q Consensus 100 ~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-----------------~~~~r~~~-------------------~~~ 139 (423)
+|+ +++++. .+|.+|++.+++.++..... ...|...+ ...
T Consensus 298 ~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (579)
T TIGR03457 298 ANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEE 377 (579)
T ss_pred CCHHHhCCCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCC
Confidence 999 577765 47889998887766543311 01121100 012
Q ss_pred CCCCCHHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEE
Q psy4881 140 PSTMSDSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCF 217 (423)
Q Consensus 140 ~~~~~p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv 217 (423)
..+++|.++++++++.+++ .+++.|.|. ..|.. ++.+.. .+++++ +++++|+||+++|+|+|++++.|+++||
T Consensus 378 ~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~---~~~~~~-~p~~~~-~~~~~g~mG~~lpaaiGa~la~p~~~Vv 452 (579)
T TIGR03457 378 GNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVAN---SYLRFE-KPRKFL-APMSFGNCGYAFPTIIGAKIAAPDRPVV 452 (579)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECCchhHHHHH---HhcCcC-CCCeEE-cCCccccccchHHHHHhhhhhCCCCcEE
Confidence 2358999999999999975 577788554 34422 112222 334455 6777899999999999999999999999
Q ss_pred EEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------cCC-chhhh--hcCCCCeEEeeCC
Q psy4881 218 ALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------SAS-VDYYT--RGDYIPGIWVDGM 283 (423)
Q Consensus 218 ~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~~~-~~~~~--~a~G~~~~~VdG~ 283 (423)
|++|||||++. ..| |.||++++||+++||.||+ |++.+..+.. ... +||.+ +++|+++++|+
T Consensus 453 ~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~-- 528 (579)
T TIGR03457 453 AYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD-- 528 (579)
T ss_pred EEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--
Confidence 99999999995 344 9999999999888888777 6876543321 112 48887 78899999998
Q ss_pred CHHHHHHHHHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 284 DILAVREAARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 284 d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
+++++.+++++|++.. +.++|+||||.+.+-
T Consensus 529 ~~~el~~al~~a~~~~-~~~~p~lieV~v~~~ 559 (579)
T TIGR03457 529 KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTRE 559 (579)
T ss_pred CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCCC
Confidence 8999999999998543 247899999999763
No 26
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.91 E-value=1.2e-24 Score=234.44 Aligned_cols=263 Identities=16% Similarity=0.155 Sum_probs=175.4
Q ss_pred ccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCC-cccCCccccccc-ccc
Q psy4881 30 EKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYHNK-FHK 105 (423)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~~~-~~g 105 (423)
++-.|.++++||.+.++.|..++...+..+++.|.++ +.+++. .. .+....+ |..+.+|+++|+ +++
T Consensus 249 ~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~-------~~--~~~~~~~~~~~~~I~id~d~~~i~ 319 (595)
T PRK09107 249 LMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDD-------RI--TGRLDAFSPNSKKIHIDIDPSSIN 319 (595)
T ss_pred ccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCc-------cc--cCchhhcCCCCeEEEEECCHHHhC
Confidence 3344444444444444444444444444455555444 233441 00 1111112 445678999999 577
Q ss_pred Ccc---cceeecCCCccchhhcccCC---------Ccccc-------ccc---c-CCCCCCCHHHHHHHHHhhcc-CC-e
Q psy4881 106 DNV---GPLIIDGNTFPDYVLDKYTL---------PTPNR-------SIT---Y-PTPSTMSDSQVDKAIDKYVK-EN-E 160 (423)
Q Consensus 106 ~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r-------~~~---~-~~~~~~~p~~vi~~l~~~~~-~~-~ 160 (423)
++. .+|++|.+.++..++....+ ...|. ... . .....++|+++++.++++++ ++ +
T Consensus 320 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~d~i 399 (595)
T PRK09107 320 KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAYTPSDDVIMPQYAIQRLYELTKGRDTY 399 (595)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHHhCCCCCeE
Confidence 765 48999999888776543211 11231 110 0 12346899999999999985 34 5
Q ss_pred EEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHh
Q psy4881 161 YSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKL 239 (423)
Q Consensus 161 ~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~ 239 (423)
++.|.|. ..| ..++.+.. .++.++ +++++|+||+|+|+|+|++++.|+++||+++|||+|++. ..| |.||++
T Consensus 400 v~~d~G~~~~~---~~~~~~~~-~p~~~~-~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r 472 (595)
T PRK09107 400 ITTEVGQHQMW---AAQFFGFE-EPNRWM-TSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMC-IQE-MSTAVQ 472 (595)
T ss_pred EEECCcHHHHH---HHHhcccC-CCCeEE-cCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhcc-HHH-HHHHHH
Confidence 6778654 344 22222221 234445 678889999999999999999999999999999999995 344 999999
Q ss_pred cCCCEEEEEecCC-cccccccccc----------c-CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCc
Q psy4881 240 WNIPCIFVCENNG-YGMGTSSERA----------S-ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGP 305 (423)
Q Consensus 240 ~~LPvi~Vv~NN~-~gi~~~~~~~----------~-~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP 305 (423)
|++|+++||+||+ |++.+..+.. . ..+||.+ ++||+++++|+ +++++.+++++|++ .++|
T Consensus 473 ~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p 546 (595)
T PRK09107 473 YNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKP 546 (595)
T ss_pred hCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCC
Confidence 9999999999888 5776533211 1 2368887 78999999998 89999999998884 5899
Q ss_pred EEEEEEEec
Q psy4881 306 ILLETATYR 314 (423)
Q Consensus 306 ~lIev~t~R 314 (423)
+||||.+.+
T Consensus 547 ~lIeV~i~~ 555 (595)
T PRK09107 547 VIFDCRVAN 555 (595)
T ss_pred EEEEEEecC
Confidence 999999975
No 27
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.91 E-value=9e-25 Score=235.12 Aligned_cols=269 Identities=14% Similarity=0.061 Sum_probs=183.5
Q ss_pred ccccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCcccc
Q psy4881 21 TCYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKY 99 (423)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~ 99 (423)
.+||.+| |+++|.+++.+..+.+....++|.++-++.+ ++- . ....-+....+ +..+.+|++
T Consensus 239 g~~p~~h--pl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~---------l~~-----~-~~~~~~~~~~~~~~~~iI~Id 301 (588)
T PRK07525 239 DAFPGSH--PLWVGPLGYNGSKAAMELIAKADVVLALGTR---------LNP-----F-GTLPQYGIDYWPKDAKIIQVD 301 (588)
T ss_pred ccCCCCC--ccccccCcccCcHHHHHHHHhCCEEEEECCC---------Cch-----h-hcccccccccCCCCCeEEEEE
Confidence 4688888 9999988887766555444555665555543 331 0 00000111223 235667999
Q ss_pred ccc-cccCcc---cceeecCCCccchhhcccCCC------------------cccccc---c----c------------C
Q psy4881 100 HNK-FHKDNV---GPLIIDGNTFPDYVLDKYTLP------------------TPNRSI---T----Y------------P 138 (423)
Q Consensus 100 ~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~~------------------~~~r~~---~----~------------~ 138 (423)
.|+ +++++. .+|.+|++.++..++....+. ..|... + . .
T Consensus 302 ~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (588)
T PRK07525 302 INPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARAR 381 (588)
T ss_pred CCHHHhCCCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhcccccccccccccccc
Confidence 988 467655 478889888776654433110 112110 0 0 0
Q ss_pred CCCCCCHHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEE
Q psy4881 139 TPSTMSDSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVC 216 (423)
Q Consensus 139 ~~~~~~p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~v 216 (423)
...+++|.+++..+++.+++ .+++.|.|. ..|.... .+. +.++.++ +++++|+||+++|+|+|++++.++++|
T Consensus 382 ~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~---~~~-~~p~~~~-~~~~~g~mG~glp~aiGa~la~p~r~v 456 (588)
T PRK07525 382 KPDYMHPRQALREIQKALPEDAIVSTDIGNNCSIANSY---LRF-EKGRKYL-APGSFGNCGYAFPAIIGAKIACPDRPV 456 (588)
T ss_pred CCCCcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHh---ccc-CCCCeEE-ccccccccccHHHHHHHHHHhCCCCcE
Confidence 12469999999999999976 467788554 4442222 122 2344455 677789999999999999999999999
Q ss_pred EEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc-----------cCCchhhh--hcCCCCeEEeeC
Q psy4881 217 FALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-----------SASVDYYT--RGDYIPGIWVDG 282 (423)
Q Consensus 217 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------~~~~~~~~--~a~G~~~~~VdG 282 (423)
|+++|||+|+++ ..| |.||+++++|+++||+||+ |++.+..+.. ...+||.+ +++|+++++|+
T Consensus 457 v~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~- 533 (588)
T PRK07525 457 VGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD- 533 (588)
T ss_pred EEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC-
Confidence 999999999996 345 9999999999999998886 6876533210 12358887 67899999998
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCC
Q psy4881 283 MDILAVREAARFAVNHCRSDKGPILLETATYRYS 316 (423)
Q Consensus 283 ~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~ 316 (423)
+++++.++++++++.. +.+||+||||.+.+-.
T Consensus 534 -~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 534 -TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred -CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 8999999999998643 2368999999997654
No 28
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.91 E-value=3.3e-24 Score=229.91 Aligned_cols=211 Identities=15% Similarity=0.156 Sum_probs=154.5
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC--Cccccc-------ccc----CCCCCCCHHHHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPNRS-------ITY----PTPSTMSDSQVDKAID 153 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~-------~~~----~~~~~~~p~~vi~~l~ 153 (423)
|..+.+|++.++ +++++. .+|++|.+.+++.++..... ...|.. .+. ....+++|.++++.|+
T Consensus 304 ~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 383 (570)
T PRK06725 304 PHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVS 383 (570)
T ss_pred CCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHH
Confidence 445568999999 578766 37999999888776543311 123321 110 1224689999999999
Q ss_pred hhccC-CeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 154 KYVKE-NEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 154 ~~~~~-~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+.+++ .+++.|.|.. .| ...+.+. +.+++++ +++++|+||+++|+|+|++++.++++||+++|||+|++. +.
T Consensus 384 ~~l~~d~iiv~d~g~~~~~---~~~~~~~-~~p~~~~-~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~ 457 (570)
T PRK06725 384 ELTNGEAIVTTEVGQHQMW---AAHFYKA-KNPRTFL-TSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMN-IQ 457 (570)
T ss_pred hhCCCCcEEEeCCcHHHHH---HHHhccc-cCCCeEE-ccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhcc-HH
Confidence 99875 5677886553 33 2111121 1233444 678889999999999999999999999999999999875 45
Q ss_pred HHHHHhHhcCCCEEEEEecCC-ccccccccc----------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNG-YGMGTSSER----------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNH 298 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~----------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ 298 (423)
| |.||+++++|+++||.||+ |++.+..+. ....+||.+ ++||+++.+|+ +++++.+++++|++
T Consensus 458 e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~- 533 (570)
T PRK06725 458 E-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA- 533 (570)
T ss_pred H-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh-
Confidence 5 9999999999999999998 476553321 112468887 78899999997 89999888888874
Q ss_pred hhCCCCcEEEEEEEec
Q psy4881 299 CRSDKGPILLETATYR 314 (423)
Q Consensus 299 ar~~~gP~lIev~t~R 314 (423)
.+||+||||.+.+
T Consensus 534 ---~~~p~liev~id~ 546 (570)
T PRK06725 534 ---HEGPVVVDFCVEE 546 (570)
T ss_pred ---CCCCEEEEEEeCC
Confidence 6899999999965
No 29
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.91 E-value=7.9e-24 Score=198.46 Aligned_cols=166 Identities=19% Similarity=0.147 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHhhccC-CeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 141 STMSDSQVDKAIDKYVKE-NEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 141 ~~~~p~~vi~~l~~~~~~-~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
.+++|+++++++++.+++ .++++|.| +++|. .++.+.. .+++++ .++++|+||+++|+|+|++++.|+++|||
T Consensus 6 ~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~---~~~~~~~-~~~~~~-~~~~~GsmG~~lpaaiGa~la~p~~~vv~ 80 (202)
T cd02006 6 VPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAG---AQMLHVY-KPRHWI-NCGQAGPLGWTVPAALGVAAADPDRQVVA 80 (202)
T ss_pred CCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHH---HHhcCcC-CCCeEE-ccCCccchhhhhHHHHhHHhhCCCCeEEE
Confidence 468999999999999975 57888854 45552 2222221 233344 67778999999999999999999999999
Q ss_pred EeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccccc--------------------CCchhhh--hcCCC
Q psy4881 219 LYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERAS--------------------ASVDYYT--RGDYI 275 (423)
Q Consensus 219 ~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~--------------------~~~~~~~--~a~G~ 275 (423)
++|||++++.. .+|.||+++++|+++||.||+ |++.++.++.. ..+||.+ +++|+
T Consensus 81 i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~ 158 (202)
T cd02006 81 LSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGC 158 (202)
T ss_pred EEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCC
Confidence 99999999853 449999999999999999888 58766433210 1368887 78899
Q ss_pred CeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 276 PGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 276 ~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
++++|+ +++++.+++++|++.+++.++|+||||.+.+.
T Consensus 159 ~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 159 KAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred EEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 999998 89999999999986554468999999998653
No 30
>PRK07524 hypothetical protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=226.53 Aligned_cols=214 Identities=17% Similarity=0.124 Sum_probs=157.8
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---Cccccc----cc---c---CCCCCCCHHHHHHHHHh
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRS----IT---Y---PTPSTMSDSQVDKAIDK 154 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~----~~---~---~~~~~~~p~~vi~~l~~ 154 (423)
.+..+|+++|+ +++++. .+|.+|.+.+++.++..... ...|.. .+ . ..+....|.++++.+++
T Consensus 290 ~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (535)
T PRK07524 290 PGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQALRAEWDPLTAAQVALLDTILA 369 (535)
T ss_pred CCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHhchhhccccccCHHHHHHHHHH
Confidence 35678999999 577764 48899999998887654322 123421 11 1 11223567889999999
Q ss_pred hccCCeEEeCCCCcc-ccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH
Q psy4881 155 YVKENEYSQDSDENM-TNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV 233 (423)
Q Consensus 155 ~~~~~~~~~d~g~~~-~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea 233 (423)
.+++.++++|.+..+ |.. .+... +.++.++.+++++|+||+++|+|+|++++.++++|||++|||+|+++ +.|
T Consensus 370 ~l~~~~i~~d~g~~~~~~~---~~~~~-~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~e- 443 (535)
T PRK07524 370 ALPDAIFVGDSTQPVYAGN---LYFDA-DAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFT-LPE- 443 (535)
T ss_pred hCCCCEEEeCCcHHHHHHH---Hhccc-CCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhh-HHH-
Confidence 998878888865533 311 11121 12333443377789999999999999999999999999999999885 455
Q ss_pred HHHhHhcCCCEEEEEecCC-ccccccccc---------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhC
Q psy4881 234 YNIAKLWNIPCIFVCENNG-YGMGTSSER---------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRS 301 (423)
Q Consensus 234 Ln~A~~~~LPvi~Vv~NN~-~gi~~~~~~---------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~ 301 (423)
|.||+++++|+++||.||+ |++.+..+. ....+||.+ +++|+++++|+ +++++.++++++++
T Consensus 444 l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---- 517 (535)
T PRK07524 444 LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA---- 517 (535)
T ss_pred HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----
Confidence 9999999999999999885 787643221 113468877 78899999998 89999999988874
Q ss_pred CCCcEEEEEEEecCCC
Q psy4881 302 DKGPILLETATYRYSG 317 (423)
Q Consensus 302 ~~gP~lIev~t~R~~g 317 (423)
.+||+||||.++|+++
T Consensus 518 ~~~p~liev~~~~~~~ 533 (535)
T PRK07524 518 RPGPTLIEVDQACWFA 533 (535)
T ss_pred CCCCEEEEEECCcccc
Confidence 6899999999999876
No 31
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.91 E-value=3.5e-24 Score=229.94 Aligned_cols=212 Identities=14% Similarity=0.147 Sum_probs=154.1
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---------Ccccc-------cc----cc--CCCCCCC
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPNR-------SI----TY--PTPSTMS 144 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r-------~~----~~--~~~~~~~ 144 (423)
+.++.+|++.|+ +++++. .+|.+|.+.+++.++..... ...|. .. .. ....+++
T Consensus 296 ~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (574)
T PRK06466 296 PNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIK 375 (574)
T ss_pred CCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcC
Confidence 446678999999 577765 48999999888766443211 01221 11 11 1124589
Q ss_pred HHHHHHHHHhhccCC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCC
Q psy4881 145 DSQVDKAIDKYVKEN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGD 222 (423)
Q Consensus 145 p~~vi~~l~~~~~~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GD 222 (423)
|.++++.|+++++++ +++.|.|. ..| ...+.+.. .++.++ .++++|+||+++|+|+|++++.++++||+++||
T Consensus 376 ~~~~~~~l~~~l~~~~iv~~d~g~~~~~---~~~~~~~~-~p~~~~-~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GD 450 (574)
T PRK06466 376 PQQVVETLYEVTNGDAYVTSDVGQHQMF---AAQYYKFN-KPNRWI-NSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGE 450 (574)
T ss_pred HHHHHHHHHhhCCCCeEEEECCcHHHHH---HHHhcccc-CCCcEE-cCCCcchhhchHHHHHHHHHhCCCCeEEEEEcc
Confidence 999999999998755 67777554 334 22212221 234444 678889999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc-----------cCCchhhh--hcCCCCeEEeeCCCHHHH
Q psy4881 223 GAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-----------SASVDYYT--RGDYIPGIWVDGMDILAV 288 (423)
Q Consensus 223 Ga~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------~~~~~~~~--~a~G~~~~~VdG~d~~~v 288 (423)
|+|++. . .+|.||+++++|+++||.||+ |++.+..+.. ...+||.+ ++||+++.+|+ +++++
T Consensus 451 G~f~m~-~-~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el 526 (574)
T PRK06466 451 GSIQMN-I-QELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDL 526 (574)
T ss_pred hhhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHH
Confidence 999985 3 449999999999988888887 6776543210 12368876 78899999998 89999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 289 REAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 289 ~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
.+++++|++. .++|+||||.+.+
T Consensus 527 ~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 527 KPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHHHHhc---CCCcEEEEEEeCC
Confidence 9999988841 2799999999965
No 32
>PLN02470 acetolactate synthase
Probab=99.91 E-value=3.8e-24 Score=230.17 Aligned_cols=211 Identities=16% Similarity=0.115 Sum_probs=153.3
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC-------Ccccccc-------cc----CCCCCCCHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-------PTPNRSI-------TY----PTPSTMSDSQV 148 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-------~~~~r~~-------~~----~~~~~~~p~~v 148 (423)
+.+..+|+++++ +++++. .+|++|.+.+++.++..... ...|+.. +. .....++|.++
T Consensus 303 ~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 382 (585)
T PLN02470 303 SRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLSYPTFGDAIPPQYA 382 (585)
T ss_pred CCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhcccCCCCCcCHHHH
Confidence 345678999998 578765 47888998887766543211 1234221 10 11246899999
Q ss_pred HHHHHhhccCC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccc
Q psy4881 149 DKAIDKYVKEN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAAN 226 (423)
Q Consensus 149 i~~l~~~~~~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~ 226 (423)
++.++++++++ ++++|.|. ..| ..++.+.. .+++++ +++++|+||+++|+|+|++++.|+++|||++|||||+
T Consensus 383 ~~~l~~~~~~d~iv~~d~G~~~~~---~~~~~~~~-~p~~~~-~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~ 457 (585)
T PLN02470 383 IQVLDELTDGNAIISTGVGQHQMW---AAQWYKYK-EPRRWL-TSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFI 457 (585)
T ss_pred HHHHHhhCCCCEEEEECCcHHHHH---HHHhcccC-CCCeEE-cCCccccccchHHHHHHHHHhCCCCcEEEEEccchhh
Confidence 99999998754 67777554 334 22222221 234444 6778899999999999999999999999999999999
Q ss_pred hhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc----------ccC--------Cchhhh--hcCCCCeEEeeCCCH
Q psy4881 227 QGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER----------ASA--------SVDYYT--RGDYIPGIWVDGMDI 285 (423)
Q Consensus 227 ~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~----------~~~--------~~~~~~--~a~G~~~~~VdG~d~ 285 (423)
+.. .+|.||+++++|+++||.||+ |++.++.++ ... .+||.+ +++|+++.+|+ ++
T Consensus 458 m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~ 533 (585)
T PLN02470 458 MNI--QELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RK 533 (585)
T ss_pred ccH--HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CH
Confidence 963 449999999999988888887 577643221 011 168887 78899999998 89
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 286 LAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 286 ~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+++.+++++|++ .++|+||||.+.+
T Consensus 534 ~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 534 SDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred HHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 999999999884 5799999999965
No 33
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.90 E-value=1.6e-23 Score=195.65 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEE
Q psy4881 142 TMSDSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFAL 219 (423)
Q Consensus 142 ~~~p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~ 219 (423)
+++|+++++.+++.+++ .++++|.|. ..| ...+... +.+++++ .++++|+||+++|+|+|++++.|+++|||+
T Consensus 3 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~---~~~~~~~-~~~~~~~-~~~~~g~mG~~lpaaiGa~la~p~r~vv~i 77 (196)
T cd02013 3 PMHPRQVLRELEKAMPEDAIVSTDIGNICSV---ANSYLRF-EKPRSFI-APLSFGNCGYALPAIIGAKAAAPDRPVVAI 77 (196)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCcHHHHH---HHHhcCc-CCCCeEE-cCCCCcccccHHHHHHHHHHhCCCCcEEEE
Confidence 57899999999999976 477788554 444 2222222 1334455 677789999999999999999999999999
Q ss_pred eCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc----------ccCCchhhh--hcCCCCeEEeeCCCHH
Q psy4881 220 YGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER----------ASASVDYYT--RGDYIPGIWVDGMDIL 286 (423)
Q Consensus 220 ~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~----------~~~~~~~~~--~a~G~~~~~VdG~d~~ 286 (423)
+|||++++. ..| |.||+++++|+++||.||+ |++.+..+. ....+||.+ +++|+++++|+ +++
T Consensus 78 ~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~ 153 (196)
T cd02013 78 AGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPE 153 (196)
T ss_pred EcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHH
Confidence 999999995 344 9999999999988887766 687664332 112478887 78899999999 799
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEecCC
Q psy4881 287 AVREAARFAVNHCRSDKGPILLETATYRYS 316 (423)
Q Consensus 287 ~v~~al~~A~~~ar~~~gP~lIev~t~R~~ 316 (423)
++.+++++|++.+| .++|+||||.+.+..
T Consensus 154 el~~al~~a~~~~~-~~~p~liev~v~~~~ 182 (196)
T cd02013 154 DVGPALQKAIAMMA-EGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence 99999999986544 478999999997643
No 34
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.90 E-value=6.9e-24 Score=227.64 Aligned_cols=255 Identities=14% Similarity=0.074 Sum_probs=173.9
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
+||.+| |+++|.++..+...++....++|.++.++-+ |+. + ..+ +.+..+|+++
T Consensus 239 ~~~~~h--p~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~---------~~~-------------~-~~~~~~~~ii~id~ 293 (574)
T PRK09124 239 HVEYDN--PYDVGMTGLIGFSSGYHAMMNCDTLLMLGTD---------FPY-------------R-QFYPTDAKIIQIDI 293 (574)
T ss_pred cCCCCC--cccccCCccCCCHHHHHHHHhCCEEEEECCC---------CCc-------------c-cccCCCCcEEEeeC
Confidence 466666 6666666555544444344445555544432 321 0 012 2356789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccC--CCcccccc-----------c----c--CCCCCCCHHHHHHHHHhhcc
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYT--LPTPNRSI-----------T----Y--PTPSTMSDSQVDKAIDKYVK 157 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~--~~~~~r~~-----------~----~--~~~~~~~p~~vi~~l~~~~~ 157 (423)
|+ +++++. .+|.+|.+.++..++.... ....|... + . ....+++|..+++.+++.++
T Consensus 294 d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 373 (574)
T PRK09124 294 NPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAA 373 (574)
T ss_pred CHHHhCCCCCCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcC
Confidence 98 577765 4888999988877654321 11223211 1 0 01245899999999999997
Q ss_pred C-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHH
Q psy4881 158 E-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235 (423)
Q Consensus 158 ~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn 235 (423)
+ .+++.|.|. ..| ...+... +.+++++ .++++|+||+++|+|+|++++.++++||+++|||||++. ..| |.
T Consensus 374 ~~~ivv~d~g~~~~~---~~~~~~~-~~~~~~~-~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~-~~e-L~ 446 (574)
T PRK09124 374 DDAIFTCDVGTPTVW---AARYLKM-NGKRRLL-GSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSML-MGD-FL 446 (574)
T ss_pred CCcEEEEcCCHHHHH---HHHhccc-CCCCeEE-ecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhcc-HHH-HH
Confidence 5 577788554 334 2211121 1233344 567789999999999999999999999999999999985 344 99
Q ss_pred HhHhcCCCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC
Q psy4881 236 IAKLWNIPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK 303 (423)
Q Consensus 236 ~A~~~~LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~ 303 (423)
||+++++|+++||.||+ ||+....+.. ...+||.+ ++||+++++|+ +++++.+++++|++ .+
T Consensus 447 Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~ 520 (574)
T PRK09124 447 SLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HD 520 (574)
T ss_pred HHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CC
Confidence 99999999888888887 6876432211 12468887 78899999998 89999999998874 57
Q ss_pred CcEEEEEEEec
Q psy4881 304 GPILLETATYR 314 (423)
Q Consensus 304 gP~lIev~t~R 314 (423)
+|+||||.+.+
T Consensus 521 ~p~lIev~i~~ 531 (574)
T PRK09124 521 GPALVDVVTAK 531 (574)
T ss_pred CCEEEEEEecC
Confidence 99999999965
No 35
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.90 E-value=5.3e-24 Score=229.56 Aligned_cols=263 Identities=16% Similarity=0.047 Sum_probs=174.8
Q ss_pred ccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCCcccCCccccccc-cccC
Q psy4881 30 EKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNK-FHKD 106 (423)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~-~~g~ 106 (423)
++-.|.++++||.+.++.|..+....|..+++.|.++ +.+|+. . .+. ...+.+..+|+++|+ ++++
T Consensus 241 ~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~--------~--~~~-~~~~~~~~i~Id~d~~~~~~ 309 (597)
T PRK08273 241 LLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPY--------S--EFL-PKEGQARGVQIDIDGRMLGL 309 (597)
T ss_pred ccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCH--------H--hcC-CCCCCCeEEEEeCCHHHcCC
Confidence 3444444444444444444444444555555555544 233431 0 000 001234567999988 5666
Q ss_pred cc---cceeecCCCccchhhcccCC--Cccccc-------cc---c-----CCCCCCCHHHHHHHHHhhccC-CeEEeCC
Q psy4881 107 NV---GPLIIDGNTFPDYVLDKYTL--PTPNRS-------IT---Y-----PTPSTMSDSQVDKAIDKYVKE-NEYSQDS 165 (423)
Q Consensus 107 nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~-------~~---~-----~~~~~~~p~~vi~~l~~~~~~-~~~~~d~ 165 (423)
+. .+|++|++.+++.++..... ...|+. .| . ....+++|+++++.+++.+++ .++++|.
T Consensus 310 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~d~ 389 (597)
T PRK08273 310 RYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADS 389 (597)
T ss_pred CCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECC
Confidence 54 47889999888776553321 123321 11 1 113469999999999999875 4677885
Q ss_pred CC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhc----
Q psy4881 166 DE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW---- 240 (423)
Q Consensus 166 g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~---- 240 (423)
|. ++| ..++.+.. .++.++ .++++|+||+++|+|+|++++.|+++|||++|||||+|....| |.||+++
T Consensus 390 G~~~~~---~~~~~~~~-~~~~~~-~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~ 463 (597)
T PRK08273 390 GSCANW---YARDLRMR-RGMMAS-LSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAE-LITVAKYWRQW 463 (597)
T ss_pred cHHHHH---HHHhCCCC-CCCeEE-ecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHH-HHHHHHHhhcc
Confidence 54 444 22222222 223344 6788899999999999999999999999999999998852344 9999999
Q ss_pred -CCCEEEEEecCC-cccccccccc------------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCC
Q psy4881 241 -NIPCIFVCENNG-YGMGTSSERA------------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKG 304 (423)
Q Consensus 241 -~LPvi~Vv~NN~-~gi~~~~~~~------------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~g 304 (423)
++|+++||+||+ |++.+..++. ....||.+ +++|+++++|+ +.+++..++++|++ .++
T Consensus 464 ~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~ 537 (597)
T PRK08273 464 SDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADR 537 (597)
T ss_pred cCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCC
Confidence 899999999887 6776543210 02356877 78899999998 89999999999884 589
Q ss_pred cEEEEEEEecC
Q psy4881 305 PILLETATYRY 315 (423)
Q Consensus 305 P~lIev~t~R~ 315 (423)
|+||||.+.+.
T Consensus 538 p~lIeV~~~~~ 548 (597)
T PRK08273 538 PVVLEVKTDPN 548 (597)
T ss_pred CEEEEEEeCCC
Confidence 99999999753
No 36
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.90 E-value=6.4e-24 Score=228.50 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=154.4
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccCC---------Cccc-------cccc---c-CCCCCCCHHHH
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPN-------RSIT---Y-PTPSTMSDSQV 148 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~-------r~~~---~-~~~~~~~p~~v 148 (423)
++.+|+++|+ +++++. .++++|++.+++.++..... ...| +... . ....+++|.++
T Consensus 314 ~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 393 (587)
T PRK06965 314 RKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYV 393 (587)
T ss_pred ceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccccCCCcCHHHH
Confidence 4568999998 577764 48999999888776553211 0122 1111 1 12346999999
Q ss_pred HHHHHhhccC-CeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccc
Q psy4881 149 DKAIDKYVKE-NEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAAN 226 (423)
Q Consensus 149 i~~l~~~~~~-~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~ 226 (423)
++.+++++++ .++++|.|.. .| ..+..+. +.+++++ .++++|+||+++|+|+|++++.++++||+++|||+|+
T Consensus 394 ~~~l~~~l~~d~ii~~d~G~~~~~---~~~~~~~-~~p~~~~-~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~ 468 (587)
T PRK06965 394 VEKLWELTDGDAFVCSDVGQHQMW---AAQFYRF-NEPRRWI-NSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQ 468 (587)
T ss_pred HHHHHhhCCCCeEEEeCCcHHHHH---HHHhccc-CCCCeEE-cCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhh
Confidence 9999999875 5677886543 34 2211222 1234455 6788899999999999999999999999999999999
Q ss_pred hhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc------c----c-CCchhhh--hcCCCCeEEeeCCCHHHHHHHH
Q psy4881 227 QGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER------A----S-ASVDYYT--RGDYIPGIWVDGMDILAVREAA 292 (423)
Q Consensus 227 ~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~----~-~~~~~~~--~a~G~~~~~VdG~d~~~v~~al 292 (423)
|.. .+|.||+++++|+++||.||+ |++.+..+. . . ..+||++ +++|+++++|+ +.++|.+++
T Consensus 469 m~~--~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al 544 (587)
T PRK06965 469 MCI--QELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPAL 544 (587)
T ss_pred cCH--HHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHH
Confidence 953 459999999999999999888 477654331 1 1 2468887 78899999998 899999999
Q ss_pred HHHHHHhhCCCCcEEEEEEEec
Q psy4881 293 RFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 293 ~~A~~~ar~~~gP~lIev~t~R 314 (423)
++|+++ .++|+||||.+.+
T Consensus 545 ~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 545 REALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred HHHHhc---CCCcEEEEEEecc
Confidence 999852 3689999999964
No 37
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.90 E-value=8e-24 Score=226.58 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=155.9
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC--Ccccccc-------c----cCCCCCCCHHHHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPNRSI-------T----YPTPSTMSDSQVDKAID 153 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~~-------~----~~~~~~~~p~~vi~~l~ 153 (423)
+..+.+|++.++ +++++. .+|++|.+.++..++..... ...|... + .....+++|.+++++++
T Consensus 297 ~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 376 (561)
T PRK06048 297 PNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLKYKEREDVIKPQYVIEQIY 376 (561)
T ss_pred CCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHH
Confidence 445678999998 577765 48999999988877654321 2234211 1 11234689999999999
Q ss_pred hhccCCeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 154 KYVKENEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 154 ~~~~~~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
+++++.+++.|.|.. .| ...+.+. +.+++++ +++++|+||+|+|+|+|++++.++++|||++|||+|++.. .
T Consensus 377 ~~~p~~iiv~d~g~~~~~---~~~~~~~-~~~~~~~-~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~--~ 449 (561)
T PRK06048 377 ELCPDAIIVTEVGQHQMW---AAQYFKY-KYPRTFI-TSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNS--Q 449 (561)
T ss_pred hhCCCcEEEEcCcHHHHH---HHHhccc-CCCCeEE-eCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccH--H
Confidence 998877788886543 33 1111121 1233345 5777899999999999999999999999999999999863 4
Q ss_pred HHHHhHhcCCCEEEEEecCC-ccccccccc------c-----cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHH
Q psy4881 233 VYNIAKLWNIPCIFVCENNG-YGMGTSSER------A-----SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNH 298 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~-----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ 298 (423)
+|.||+++++|+++||.||+ |++.+..+. . ...+||.+ +++|+++++|+ +.+++.+++++|++
T Consensus 450 eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~- 526 (561)
T PRK06048 450 ELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA- 526 (561)
T ss_pred HHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-
Confidence 49999999999998888887 576543221 1 12467877 78899999998 89999999999884
Q ss_pred hhCCCCcEEEEEEEec
Q psy4881 299 CRSDKGPILLETATYR 314 (423)
Q Consensus 299 ar~~~gP~lIev~t~R 314 (423)
.++|+||||.+.+
T Consensus 527 ---~~~p~liev~~~~ 539 (561)
T PRK06048 527 ---SDRPVVIDFIVEC 539 (561)
T ss_pred ---CCCCEEEEEEecC
Confidence 5899999999965
No 38
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.90 E-value=5e-24 Score=228.57 Aligned_cols=260 Identities=13% Similarity=0.107 Sum_probs=178.8
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-c-ccCCcccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-P-FCDNSHKY 99 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p-~cdg~H~~ 99 (423)
++|.+| |+++|.+++.+....+....++|.++-++-+ |+. +.......+ + .++..|++
T Consensus 247 ~i~~~h--p~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~---------~~~---------~~~~~~~~~~~~~~~~i~id 306 (572)
T PRK06456 247 AIPHDH--PLYFGPMGYYGRAEASMAALESDAMLVVGAR---------FSD---------RTFTSYDEMVETRKKFIMVN 306 (572)
T ss_pred CCCCCC--ccccccCCCCCCHHHHHHHHhCCEEEEECCC---------Cch---------hhccccccccCCCCeEEEEe
Confidence 667777 7777777776665555555556666555544 441 101011112 1 34568999
Q ss_pred ccc-cccCcc---cceeecCCCccchhhcccC------CCcccccc-------cc-----CCCCCCCHHHHHHHHHhhcc
Q psy4881 100 HNK-FHKDNV---GPLIIDGNTFPDYVLDKYT------LPTPNRSI-------TY-----PTPSTMSDSQVDKAIDKYVK 157 (423)
Q Consensus 100 ~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~------~~~~~r~~-------~~-----~~~~~~~p~~vi~~l~~~~~ 157 (423)
+|+ .++++. ..+++|++.+++.++.... ....|... +. .....++|.++++.|++.++
T Consensus 307 ~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 386 (572)
T PRK06456 307 IDPTDGEKAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALP 386 (572)
T ss_pred CChHHhCCccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCC
Confidence 998 467655 3788999888877644321 11234311 10 11235999999999999997
Q ss_pred C-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHH
Q psy4881 158 E-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235 (423)
Q Consensus 158 ~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn 235 (423)
+ .++++|.|. ++|.... .... .+++++ .++++|+||+++|+|+|++++.++++||+++|||+|++.. .+|.
T Consensus 387 ~~~ii~~d~g~~~~~~~~~---~~~~-~p~~~~-~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~--~eL~ 459 (572)
T PRK06456 387 RDAIVTTGVGQHQMWAEVF---WEVL-EPRTFL-TSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTG--TNLA 459 (572)
T ss_pred CCEEEEECCcHHHHHHHHh---cCcC-CCCcEE-cCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcch--HHHH
Confidence 5 467777554 4452111 1111 223344 5677899999999999999999999999999999999863 4499
Q ss_pred HhHhcCCCEEEEEecCC-cccccccccc-----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhC
Q psy4881 236 IAKLWNIPCIFVCENNG-YGMGTSSERA-----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRS 301 (423)
Q Consensus 236 ~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~ 301 (423)
||+++++|+++||.||+ |++.+..+.. ...+||.+ +++|+++++|+ +++++.+++++|++
T Consensus 460 Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~---- 533 (572)
T PRK06456 460 TAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK---- 533 (572)
T ss_pred HHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----
Confidence 99999999999999888 6876643311 12367887 78899999998 89999999988874
Q ss_pred CCCcEEEEEEEec
Q psy4881 302 DKGPILLETATYR 314 (423)
Q Consensus 302 ~~gP~lIev~t~R 314 (423)
.++|+||||.+.+
T Consensus 534 ~~~p~lIev~v~~ 546 (572)
T PRK06456 534 EDIPAVIRVPVDK 546 (572)
T ss_pred CCCCEEEEEEeCc
Confidence 5899999999976
No 39
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.90 E-value=1.3e-22 Score=218.86 Aligned_cols=195 Identities=22% Similarity=0.232 Sum_probs=164.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcC------CCCEEEEEeCCCc-cchhhHHHHHHHhHhcCCC---EEEEEecCCcccccccc
Q psy4881 191 TNQLVTVPLGVGIALAAKYSG------TKGVCFALYGDGA-ANQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGTSSE 260 (423)
Q Consensus 191 sg~~g~l~~A~GaA~a~k~~~------~~~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~~~~ 260 (423)
||.-+--|+.-|++.|.+-.- -....|++.||++ .++|.++|+||+|..+++| +|+||.||++|++|...
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~ 698 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE 698 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc
Confidence 343345788889888876432 1345789999999 5899999999999999999 99999999999998876
Q ss_pred cccC---CchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHH
Q psy4881 261 RASA---SVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR 337 (423)
Q Consensus 261 ~~~~---~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~ 337 (423)
...+ ..|++ +++++|++.|||+|++++..+.+.|+++.+++++|++||+.|||.+||+++|+|+ +.++..++...
T Consensus 699 ~~Rss~y~td~a-k~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~ 776 (1228)
T PRK12270 699 SSRSSEYATDVA-KMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLID 776 (1228)
T ss_pred ccccchhhHHHH-hhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhh
Confidence 3322 34444 4789999999999999999999999999999999999999999999999999986 77777777666
Q ss_pred hcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Q psy4881 338 QTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGL 387 (423)
Q Consensus 338 ~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~ 387 (423)
+.+..-+.|.+.|+.+|.+|++|++++.++++++++.++...++.....+
T Consensus 777 ~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~ 826 (1228)
T PRK12270 777 AKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPP 826 (1228)
T ss_pred hcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 55555689999999999999999999999999999999999887654443
No 40
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.90 E-value=1e-23 Score=224.70 Aligned_cols=205 Identities=11% Similarity=0.025 Sum_probs=146.3
Q ss_pred cCCccccccc-cccCccc---ceeecCCCccchhhcccCCCccccc------ccc-CCCCCCCHHHHHHHHHhhccC-Ce
Q psy4881 93 CDNSHKYHNK-FHKDNVG---PLIIDGNTFPDYVLDKYTLPTPNRS------ITY-PTPSTMSDSQVDKAIDKYVKE-NE 160 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nvg---pl~~d~~~vl~~~l~~~~~~~~~r~------~~~-~~~~~~~p~~vi~~l~~~~~~-~~ 160 (423)
++.+|++.++ +++++.. ++ +|++.++..++.... ..|.. .+. .+..+++|.++++.|++.+++ ++
T Consensus 298 ~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~i 374 (539)
T TIGR03393 298 EQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG--LMWSSSGAIPFPQPDESRSALSQENFWQTLQTFLRPGDI 374 (539)
T ss_pred ccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc--cccccccccCcCCCCCCCCccCHHHHHHHHHHhcCCCCE
Confidence 5567888777 4666542 34 777777666654321 12321 111 122359999999999999974 67
Q ss_pred EEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhc
Q psy4881 161 YSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLW 240 (423)
Q Consensus 161 ~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~ 240 (423)
+++|.|...| ...+.... .++.++ .++++|+||+++|+|+|++++.|+++|||++|||||+|. . ++|.||+++
T Consensus 375 iv~d~G~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~-~-~EL~Ta~~~ 447 (539)
T TIGR03393 375 ILADQGTSAF---GAADLRLP-ADVNFI-VQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLT-I-QELGSMLRD 447 (539)
T ss_pred EEEccCchhh---hhhhccCC-CCCeEE-echhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhH-H-HHHHHHHHc
Confidence 8888654434 22222222 223344 567789999999999999999999999999999999995 3 559999999
Q ss_pred CCCEEEEEecCC-ccccccccc----c--cCCchhhh--hcCCCC----eEEeeCCCHHHHHHHHHHHHHHhhCCCCcEE
Q psy4881 241 NIPCIFVCENNG-YGMGTSSER----A--SASVDYYT--RGDYIP----GIWVDGMDILAVREAARFAVNHCRSDKGPIL 307 (423)
Q Consensus 241 ~LPvi~Vv~NN~-~gi~~~~~~----~--~~~~~~~~--~a~G~~----~~~VdG~d~~~v~~al~~A~~~ar~~~gP~l 307 (423)
++|+++||+||+ |++.+..+. . ...++|.+ +++|++ +++|+ +.+++.+++++|+ +.+||+|
T Consensus 448 ~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~----~~~~p~l 521 (539)
T TIGR03393 448 KQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSL 521 (539)
T ss_pred CCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh----ccCCeEE
Confidence 999888888777 687654331 1 12468877 678875 89998 8999999998887 4689999
Q ss_pred EEEEEe
Q psy4881 308 LETATY 313 (423)
Q Consensus 308 Iev~t~ 313 (423)
|||.+.
T Consensus 522 iev~i~ 527 (539)
T TIGR03393 522 IEVVLP 527 (539)
T ss_pred EEEEcC
Confidence 999984
No 41
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.90 E-value=8.8e-24 Score=227.34 Aligned_cols=262 Identities=15% Similarity=0.158 Sum_probs=175.6
Q ss_pred ccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCC-cccCCccccccc-ccc
Q psy4881 30 EKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYHNK-FHK 105 (423)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~~~-~~g 105 (423)
++-.|.+++++|.+.++.|..+....|..+++.|.++ +.+|+.- . .+....| +.++.+|+++|+ +++
T Consensus 252 ~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~-------~--~~~~~~~~~~~~~i~id~d~~~i~ 322 (585)
T CHL00099 252 LMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDR-------V--TGKLDEFACNAQVIHIDIDPAEIG 322 (585)
T ss_pred cccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCccc-------c--cCCHhHcCCCCeEEEEECCHHHhC
Confidence 4444444444444444444444444455555555544 3345420 0 1111112 346678999999 577
Q ss_pred Ccc---cceeecCCCccchhhcccCC---------Ccccccc-------c---c-CCCCCCCHHHHHHHHHhhccCCeEE
Q psy4881 106 DNV---GPLIIDGNTFPDYVLDKYTL---------PTPNRSI-------T---Y-PTPSTMSDSQVDKAIDKYVKENEYS 162 (423)
Q Consensus 106 ~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r~~-------~---~-~~~~~~~p~~vi~~l~~~~~~~~~~ 162 (423)
++. .+|.+|++.+++.++..... ...|... + . ....+++|.++++++++++++.+++
T Consensus 323 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~d~iv~ 402 (585)
T CHL00099 323 KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAPDAYFT 402 (585)
T ss_pred CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCCeEEE
Confidence 765 37889999888776543221 0223211 1 1 1134699999999999998866788
Q ss_pred eCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcC
Q psy4881 163 QDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWN 241 (423)
Q Consensus 163 ~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~ 241 (423)
.|.|. ..|... +.+. .+++++ .+++.|+||+++|+|+|++++.++++||+++|||+|++. . .+|.||++++
T Consensus 403 ~d~G~~~~~~~~---~~~~--~~~~~~-~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~ 474 (585)
T CHL00099 403 TDVGQHQMWAAQ---FLKC--KPRKWL-SSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMN-L-QELGTIAQYN 474 (585)
T ss_pred ECCcHHHHHHHH---hccC--CCCcEE-cCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhh-H-HHHHHHHHhC
Confidence 88654 344211 1111 123344 677889999999999999999999999999999999985 3 4499999999
Q ss_pred CCEEEEEecCC-ccccccccc------cc------CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 242 IPCIFVCENNG-YGMGTSSER------AS------ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 242 LPvi~Vv~NN~-~gi~~~~~~------~~------~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
+|+++||+||+ |++.+..+. .. ..++|.+ +++|+++++|+ +++++.+++++|++ .+||+
T Consensus 475 l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~ 548 (585)
T CHL00099 475 LPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPV 548 (585)
T ss_pred CCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCE
Confidence 99999999888 476553321 11 1367876 78899999998 79999998888874 68999
Q ss_pred EEEEEEec
Q psy4881 307 LLETATYR 314 (423)
Q Consensus 307 lIev~t~R 314 (423)
||||.+.+
T Consensus 549 liev~v~~ 556 (585)
T CHL00099 549 LIDCQVIE 556 (585)
T ss_pred EEEEEECC
Confidence 99999964
No 42
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.90 E-value=9.9e-24 Score=226.31 Aligned_cols=211 Identities=18% Similarity=0.224 Sum_probs=155.0
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---Cccccccc-----------cCCCCCCCHHHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRSIT-----------YPTPSTMSDSQVDKAI 152 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~~~-----------~~~~~~~~p~~vi~~l 152 (423)
+.++.+|+++|+ +++++. .++.+|.+.++..++..... ...|...+ .....+++|.++++.+
T Consensus 305 ~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (571)
T PRK07710 305 KEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLSYKRNSESIKPQKAIEML 384 (571)
T ss_pred CCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhChhhhcCCCCCcCHHHHHHHH
Confidence 446778999998 578765 37889999888776543211 23353211 1123468999999999
Q ss_pred HhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhH
Q psy4881 153 DKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQV 230 (423)
Q Consensus 153 ~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~ 230 (423)
++.+++ .+++.|.|. ..| ...+.+. +.+++++ +++++|+||+++|+|+|++++.++++||+++|||||++. +
T Consensus 385 ~~~l~~~~iv~~d~g~~~~~---~~~~~~~-~~~~~~~-~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~-~ 458 (571)
T PRK07710 385 YEITKGEAIVTTDVGQHQMW---AAQYYPF-KTPDKWV-TSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMT-L 458 (571)
T ss_pred HhhCCCCeEEEECCcHHHHH---HHHhccc-CCCCeEE-cCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhh-H
Confidence 999875 567788654 334 1111122 1334455 677789999999999999999999999999999999984 4
Q ss_pred HHHHHHhHhcCCCEEEEEecCC-cccccccccc-----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHH
Q psy4881 231 FEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAV 296 (423)
Q Consensus 231 ~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~ 296 (423)
.| |.+|+++++|+++||.||+ |++.+..+.. ...++|++ +++|+++++|+ +.+++.+++++|+
T Consensus 459 ~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~ 535 (571)
T PRK07710 459 QE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAI 535 (571)
T ss_pred HH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH
Confidence 55 9999999999888888887 6876543211 12467877 78899999998 7889988888887
Q ss_pred HHhhCCCCcEEEEEEEec
Q psy4881 297 NHCRSDKGPILLETATYR 314 (423)
Q Consensus 297 ~~ar~~~gP~lIev~t~R 314 (423)
+ .+||+||||.+.+
T Consensus 536 ~----~~~p~lieV~vd~ 549 (571)
T PRK07710 536 E----LQEPVVIDCRVLQ 549 (571)
T ss_pred h----CCCCEEEEEEecC
Confidence 4 6899999999975
No 43
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.90 E-value=1.5e-23 Score=223.85 Aligned_cols=262 Identities=17% Similarity=0.144 Sum_probs=175.1
Q ss_pred ccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCC-cccCCccccccc-ccc
Q psy4881 30 EKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYHNK-FHK 105 (423)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~~~-~~g 105 (423)
+.-.|.+++++|.+.++.|..++...|..+++.|.++ +.+++. .. .+....| |.++.+|++.|+ +++
T Consensus 231 ~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~-------~~--~~~~~~~~~~~~~i~id~d~~~~~ 301 (548)
T PRK08978 231 LKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDD-------RV--TGKLNTFAPHAKVIHLDIDPAEIN 301 (548)
T ss_pred cccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCc-------cc--cCCccccCCCCeEEEEECCHHHhC
Confidence 3344444444444444444434444444444444444 233441 00 1111223 456788999999 577
Q ss_pred Ccc---cceeecCCCccchhhcccCCCccccccc----------c-CCCCCCCHHHHHHHHHhhccC-CeEEeCCCC-cc
Q psy4881 106 DNV---GPLIIDGNTFPDYVLDKYTLPTPNRSIT----------Y-PTPSTMSDSQVDKAIDKYVKE-NEYSQDSDE-NM 169 (423)
Q Consensus 106 ~nv---gpl~~d~~~vl~~~l~~~~~~~~~r~~~----------~-~~~~~~~p~~vi~~l~~~~~~-~~~~~d~g~-~~ 169 (423)
++. .+|.+|++.+++.++... ....|...+ . .....++|.++++++++.+++ .+++.|.|. ..
T Consensus 302 ~~~~~~~~i~~d~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~ 380 (548)
T PRK08978 302 KLRQAHVALQGDLNALLPALQQPL-NIDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQM 380 (548)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhc-cchHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHH
Confidence 765 489999998887765432 223343211 1 112468999999999999875 578888654 33
Q ss_pred ccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEe
Q psy4881 170 TNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCE 249 (423)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~ 249 (423)
|. ..+.... .+++++ +++++|+||+++|+|+|++++.++++||+++|||||++.. .+|.||+++++|+++||.
T Consensus 381 ~~---~~~~~~~-~~~~~~-~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~ 453 (548)
T PRK08978 381 WV---AQHMRFT-RPENFI-TSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLL 453 (548)
T ss_pred HH---HHhcccC-CCCeEE-eCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEE
Confidence 41 1111111 233444 5677899999999999999999999999999999999853 449999999999888888
Q ss_pred cCC-ccccccccc------cc-----CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 250 NNG-YGMGTSSER------AS-----ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 250 NN~-~gi~~~~~~------~~-----~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
||+ |++.+..+. .. ..+||.+ ++||+++.+|+ +++++.+++++|++ .++|+||||.+.+
T Consensus 454 NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 454 DNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 877 577654321 11 2367887 78899999998 89999999988874 6899999999976
No 44
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.90 E-value=6.5e-24 Score=229.49 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=179.5
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
+||.+| |+++|.++..+....+....++|.++-++.+ ++.. . .+....| +..+.+|+++
T Consensus 271 ~~p~~h--pl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~---------l~~~-------~--t~~~~~~~~~~~~i~Id~ 330 (612)
T PRK07789 271 AFPDSH--PQHLGMPGMHGTVAAVAALQRSDLLIALGAR---------FDDR-------V--TGKLDSFAPDAKVIHADI 330 (612)
T ss_pred cCCCCC--hhhccCCcccCcHHHHHHHHhCCEEEEECCC---------CCcc-------c--cCChhhcCCCCcEEEEEC
Confidence 567777 7777776665555544444455555555543 4320 0 1111112 4456789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccCC---------Ccccccc-------c---c--CCCCCCCHHHHHHHHHhh
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPNRSI-------T---Y--PTPSTMSDSQVDKAIDKY 155 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r~~-------~---~--~~~~~~~p~~vi~~l~~~ 155 (423)
|+ +++++. .+|++|.+.++..++..... ...|... + . ....+++|.++++++++.
T Consensus 331 d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 410 (612)
T PRK07789 331 DPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEI 410 (612)
T ss_pred CHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhh
Confidence 98 577765 48999999988777553211 1223211 1 0 112459999999999998
Q ss_pred ccC-CeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH
Q psy4881 156 VKE-NEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV 233 (423)
Q Consensus 156 ~~~-~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea 233 (423)
+++ .+++.|.|.. .| ..++.+. +.++.++ +++++|+||+++|+|+|++++.++++|||++|||+|++. ..+
T Consensus 411 l~~~~ivv~d~G~~~~~---~~~~~~~-~~p~~~~-~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~--~~e 483 (612)
T PRK07789 411 AGPDAIYVAGVGQHQMW---AAQFIDY-EKPRTWL-NSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMT--NQE 483 (612)
T ss_pred CCCCeEEEECCcHHHHH---HHHhccc-CCCCeEE-cCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhcc--HHH
Confidence 864 5788886543 34 2222222 1233344 678889999999999999999999999999999999985 345
Q ss_pred HHHhHhcCCCEEEEEecCC-ccccccccc------cc---------CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHH
Q psy4881 234 YNIAKLWNIPCIFVCENNG-YGMGTSSER------AS---------ASVDYYT--RGDYIPGIWVDGMDILAVREAARFA 295 (423)
Q Consensus 234 Ln~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~~---------~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A 295 (423)
|.||++++||+++||.||+ |++.+..+. .. ..+||.+ +++|+++++|+ +.+++.+++++|
T Consensus 484 L~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a 561 (612)
T PRK07789 484 LATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKA 561 (612)
T ss_pred HHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHH
Confidence 9999999999888888887 677653221 00 1267887 78899999998 899999999999
Q ss_pred HHHhhCCCCcEEEEEEEec
Q psy4881 296 VNHCRSDKGPILLETATYR 314 (423)
Q Consensus 296 ~~~ar~~~gP~lIev~t~R 314 (423)
++. .++|+||||.+.+
T Consensus 562 ~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 562 RAI---NDRPVVIDFVVGK 577 (612)
T ss_pred Hhc---CCCcEEEEEEECC
Confidence 852 3799999999965
No 45
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.90 E-value=1.2e-23 Score=226.42 Aligned_cols=215 Identities=15% Similarity=0.063 Sum_probs=156.0
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---------Cccccccc-------c----CCCCCCCHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPNRSIT-------Y----PTPSTMSDS 146 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r~~~-------~----~~~~~~~p~ 146 (423)
+..+.+|+++|+ .++++. .++++|++.+++.++..... ...|+..+ . ....+++|.
T Consensus 294 ~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (591)
T PRK11269 294 KGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTHFDNVPIKPQ 373 (591)
T ss_pred CCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhccCCCCCcCHH
Confidence 334568999998 577765 48889998887776543211 12343221 0 112358999
Q ss_pred HHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
++++.|++.+++ .+++.|.|. ..| ...+.+.. .++.++ +++++|+||+++|+|+|++++.++++|||++||||
T Consensus 374 ~~~~~l~~~l~~d~ivv~d~g~~~~~---~~~~~~~~-~p~~~~-~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~ 448 (591)
T PRK11269 374 RVYEEMNKAFGRDTCYVSTIGLSQIA---AAQFLHVY-KPRHWI-NCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYD 448 (591)
T ss_pred HHHHHHHHhcCCCcEEEECCcHHHHH---HHHhcccC-CCCcEE-eCCccccccchhhhHHhhhhhCCCCcEEEEEccch
Confidence 999999999875 567777554 334 11111221 233344 67788999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc--------c------------CCchhhh--hcCCCCeEEee
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA--------S------------ASVDYYT--RGDYIPGIWVD 281 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~--------~------------~~~~~~~--~a~G~~~~~Vd 281 (423)
|++. ..| |.||+++++|+++||+||+ ||+.+..+.. . ..+||.+ +++|+++.+|+
T Consensus 449 f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~ 526 (591)
T PRK11269 449 FQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF 526 (591)
T ss_pred hhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC
Confidence 9985 344 9999999999999999888 6876543210 0 1367887 78899999998
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 282 GMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 282 G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+++++.+++++|++.+.+.+||+||||.+.+
T Consensus 527 --~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 527 --KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred --CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 8999999999998654446899999999964
No 46
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.90 E-value=2e-23 Score=223.56 Aligned_cols=211 Identities=20% Similarity=0.175 Sum_probs=154.3
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC-----Ccccccc---c-------c-CCCCCCCHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-----PTPNRSI---T-------Y-PTPSTMSDSQVDK 150 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-----~~~~r~~---~-------~-~~~~~~~p~~vi~ 150 (423)
|.++.+|+++|+ +++++. .++++|++.++..++..... ...|... + . ....+++|.++++
T Consensus 293 ~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 372 (563)
T PRK08527 293 KHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPLSYEDSDEVLKPQWVIE 372 (563)
T ss_pred CCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHH
Confidence 445678999999 577755 48899999988777553321 1234211 1 0 1124689999999
Q ss_pred HHHhhccCC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchh
Q psy4881 151 AIDKYVKEN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQG 228 (423)
Q Consensus 151 ~l~~~~~~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G 228 (423)
.+++.++++ +++.|.|. ..| ...+.+.. .+++++ ++++.|+||+++|+|+|++++.|+++|||++|||+|++.
T Consensus 373 ~l~~~l~~d~iv~~d~g~~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~ 447 (563)
T PRK08527 373 RVGELLGDDAIISTDVGQHQMW---VAQFYPFN-YPRQLA-TSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMN 447 (563)
T ss_pred HHHhhCCCCeEEEECCcHHHHH---HHHhcccC-CCCeEE-cCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhccc
Confidence 999999765 67778654 333 11111211 233344 677789999999999999999999999999999999985
Q ss_pred hHHHHHHHhHhcCCCEEEEEecCC-ccccccccc------c-----cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHH
Q psy4881 229 QVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER------A-----SASVDYYT--RGDYIPGIWVDGMDILAVREAARF 294 (423)
Q Consensus 229 ~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~-----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~ 294 (423)
..| |.||++++||+++||.||+ |++.+..+. . ...++|.+ +++|+.+++|+ +++++.+++++
T Consensus 448 -~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~ 523 (563)
T PRK08527 448 -IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKE 523 (563)
T ss_pred -HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHH
Confidence 455 9999999999999888887 577654321 1 11357776 78899999998 89999999988
Q ss_pred HHHHhhCCCCcEEEEEEEec
Q psy4881 295 AVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 295 A~~~ar~~~gP~lIev~t~R 314 (423)
|++ .+||+||||.+.+
T Consensus 524 a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 524 ALE----SDKVALIDVKIDR 539 (563)
T ss_pred HHh----CCCCEEEEEEECC
Confidence 874 5899999999976
No 47
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.90 E-value=9.8e-24 Score=226.15 Aligned_cols=210 Identities=17% Similarity=0.154 Sum_probs=153.8
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---Ccccccc-------cc---CCCCCCCHHHHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRSI-------TY---PTPSTMSDSQVDKAID 153 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~~-------~~---~~~~~~~p~~vi~~l~ 153 (423)
+..+.+|+++|+ +++++. .++++|++.+++.++..... ...|+.. +. ....+++|.+++++|+
T Consensus 300 ~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 379 (566)
T PRK07282 300 KNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVRSYDKKERVVQPQAVIERIG 379 (566)
T ss_pred CCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhchhccCcCCCcCHHHHHHHHH
Confidence 446678999998 578765 48889999888777554321 2334321 11 1123699999999999
Q ss_pred hhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 154 KYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 154 ~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
..+++ .+++.|.|. ..| ..++.+.. .++.++ +++++|+||+++|+|+|++++.|+++||+++|||+|++. .
T Consensus 380 ~~~~~~~ivv~d~G~~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~-~- 452 (566)
T PRK07282 380 ELTNGDAIVVTDVGQHQMW---AAQYYPYQ-NERQLV-TSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMT-N- 452 (566)
T ss_pred hhcCCCeEEEECCcHHHHH---HHHhcccC-CCCcEe-cCCccccccchhhHhheeheecCCCcEEEEEcchhhhcc-H-
Confidence 99865 567788654 334 11112221 233344 678889999999999999999999999999999999985 3
Q ss_pred HHHHHhHhcCCCEEEEEecCC-ccccccccc-----------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNG-YGMGTSSER-----------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVN 297 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-----------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~ 297 (423)
.+|.||+++++|+++||.||+ |++.+..++ ....+||.+ ++||+++++|+ +++++.++++ ++
T Consensus 453 ~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~- 528 (566)
T PRK07282 453 QELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI- 528 (566)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh-
Confidence 449999999999888888887 687654331 112468887 78899999998 7899988886 33
Q ss_pred HhhCCCCcEEEEEEEec
Q psy4881 298 HCRSDKGPILLETATYR 314 (423)
Q Consensus 298 ~ar~~~gP~lIev~t~R 314 (423)
..++|+||||.+.+
T Consensus 529 ---~~~~p~lIeV~v~~ 542 (566)
T PRK07282 529 ---TEDVPMLIEVDISR 542 (566)
T ss_pred ---cCCCCEEEEEEeCC
Confidence 34899999999975
No 48
>PRK08611 pyruvate oxidase; Provisional
Probab=99.90 E-value=2.1e-23 Score=224.04 Aligned_cols=209 Identities=15% Similarity=0.134 Sum_probs=153.0
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccCC--Ccccccc-------c---c-----CCCCCCCHHHHHHH
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPNRSI-------T---Y-----PTPSTMSDSQVDKA 151 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~~-------~---~-----~~~~~~~p~~vi~~ 151 (423)
++.+|+++|+ +++++. .+|++|.+.+++.++..... ...|... | . ....+++|.++++.
T Consensus 288 ~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~ 367 (576)
T PRK08611 288 AKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAA 367 (576)
T ss_pred CcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHH
Confidence 5678999999 577766 36889999888877554321 1223211 1 0 12245899999999
Q ss_pred HHhhccCC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhh
Q psy4881 152 IDKYVKEN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQ 229 (423)
Q Consensus 152 l~~~~~~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~ 229 (423)
++..++++ +++.|.|. ..|. .++.+.. .++.++ .++++|+||+++|+|+|++++.++++||+++|||||++.
T Consensus 368 l~~~l~~~~ivv~d~G~~~~~~---~~~~~~~-~~~~~~-~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~- 441 (576)
T PRK08611 368 IQKIADDDAVLSVDVGTVTVWS---ARYLNLG-TNQKFI-ISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMV- 441 (576)
T ss_pred HhhhcCCCeEEEEcChHHHHHH---HhcCCcC-CCCeEE-eCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhh-
Confidence 99999764 67788654 3442 1111221 223344 566689999999999999999999999999999999995
Q ss_pred HHHHHHHhHhcCCCEEEEEecCC-ccccccccc---------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHH
Q psy4881 230 VFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER---------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVN 297 (423)
Q Consensus 230 ~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~---------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~ 297 (423)
. .+|.||+++++|+++||.||+ |++....+. ....+||.+ ++||+++++|+ +++++.+++++|++
T Consensus 442 ~-~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~ 518 (576)
T PRK08611 442 M-QDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA 518 (576)
T ss_pred H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh
Confidence 3 459999999999888888777 587543221 112468887 78899999998 89999999998874
Q ss_pred HhhCCCCcEEEEEEEec
Q psy4881 298 HCRSDKGPILLETATYR 314 (423)
Q Consensus 298 ~ar~~~gP~lIev~t~R 314 (423)
.++|+||||.+.+
T Consensus 519 ----~~~p~lIeV~vd~ 531 (576)
T PRK08611 519 ----QDKPVIIDVYVDP 531 (576)
T ss_pred ----CCCCEEEEEEeCC
Confidence 5899999999975
No 49
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.89 E-value=3.5e-23 Score=221.78 Aligned_cols=211 Identities=15% Similarity=0.137 Sum_probs=154.6
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccC--CCcccccc-------cc----CCCCCCCHHHHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT--LPTPNRSI-------TY----PTPSTMSDSQVDKAID 153 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~--~~~~~r~~-------~~----~~~~~~~p~~vi~~l~ 153 (423)
+..+.+|+++|+ +++++. .++.+|.+.+++.++.... ....|... +. ....+++|.+++++++
T Consensus 301 ~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~ 380 (564)
T PRK08155 301 PNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVA 380 (564)
T ss_pred CCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhChhhcccCCCCcCHHHHHHHHH
Confidence 345568999998 467655 3788899988877655432 12334211 11 1224689999999999
Q ss_pred hhccCC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 154 KYVKEN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 154 ~~~~~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+.++++ +++.|.|. ..| ...+.+.. .+++++ +++++|+||+++|+|+|++++.++++||+++|||+|++. +.
T Consensus 381 ~~l~~~~iv~~D~G~~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~-~~ 454 (564)
T PRK08155 381 ACVDDNAIITTDVGQHQMW---TAQAYPLN-RPRQWL-TSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMN-IQ 454 (564)
T ss_pred HhCCCCeEEEECCchHHHH---HHHhcccc-CCCeEE-eCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhcc-HH
Confidence 999764 67788654 334 11111221 233444 677789999999999999999999999999999999985 45
Q ss_pred HHHHHhHhcCCCEEEEEecCC-ccccccccc-----------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNG-YGMGTSSER-----------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVN 297 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-----------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~ 297 (423)
| |.||+++++|+++||+||+ |++.+..+. ....++|.+ +++|+++++|+ +.+++.+++++|++
T Consensus 455 e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~ 531 (564)
T PRK08155 455 E-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN 531 (564)
T ss_pred H-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh
Confidence 5 9999999999999999888 688664332 112467877 67899999998 78999998888874
Q ss_pred HhhCCCCcEEEEEEEec
Q psy4881 298 HCRSDKGPILLETATYR 314 (423)
Q Consensus 298 ~ar~~~gP~lIev~t~R 314 (423)
.++|+||||.+.+
T Consensus 532 ----~~~p~lIeV~~~~ 544 (564)
T PRK08155 532 ----RPGPALIHVRIDA 544 (564)
T ss_pred ----CCCCEEEEEEeCC
Confidence 5799999999965
No 50
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.89 E-value=3.6e-23 Score=221.06 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=173.8
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
+||.+| |+++|.++..+...++-...++|.++.++.+ ++. . .+ + +..+.+|++.
T Consensus 233 ~~~~~h--p~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~---------~~~--------~--~~----~~~~~~ii~id~ 287 (549)
T PRK06457 233 ILPDLD--PKVMGGIGLLGTKPSIEAMDKADLLIMLGTS---------FPY--------V--NF----LNKSAKVIQVDI 287 (549)
T ss_pred cCCCCC--hhhccCCCCCCCHHHHHHHHhCCEEEEECCC---------CCh--------h--hc----CCCCCcEEEEeC
Confidence 467777 7777777665555444444455665555543 331 0 01 1 2345679999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccCC---------Cccccccc---c-CCCCCCCHHHHHHHHHhhccC-CeEE
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPNRSIT---Y-PTPSTMSDSQVDKAIDKYVKE-NEYS 162 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r~~~---~-~~~~~~~p~~vi~~l~~~~~~-~~~~ 162 (423)
|+ +++++. .++.+|.+.+++.++..... ...|+..+ . ....+++|+++++++++.+++ .+++
T Consensus 288 d~~~~~~~~~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv 367 (549)
T PRK06457 288 DNSNIGKRLDVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQENSLDKPMKPQRVAYIVSQKCKKDAVIV 367 (549)
T ss_pred CHHHhCCCCCCCeEEecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHhhCCCCeEEE
Confidence 88 577654 47888998887543321100 01232221 1 123468999999999999975 5677
Q ss_pred eCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCC-CCEEEEEeCCCccchhhHHHHHHHhHhc
Q psy4881 163 QDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGT-KGVCFALYGDGAANQGQVFEVYNIAKLW 240 (423)
Q Consensus 163 ~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~-~~~vv~~~GDGa~~~G~~~EaLn~A~~~ 240 (423)
+|.|. .+|.. .+.... .+++++ .++.+|+||+++|+|+|++++.+ +++|||++|||||++. ..+|.||+++
T Consensus 368 ~d~g~~~~~~~---~~~~~~-~~~~~~-~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~ 440 (549)
T PRK06457 368 TDTGNVTMWTA---RHFRAS-GEQTFI-FSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMT--MMELITAKKY 440 (549)
T ss_pred ECCcHHHHHHH---HhCCCC-CCCeEE-eCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhh--HHHHHHHHHH
Confidence 78543 44521 111111 223344 56778999999999999999998 9999999999999985 3459999999
Q ss_pred CCCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 241 NIPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 241 ~LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
+||+++||.||+ |++....+.. ...+||.+ ++||+++++|+ +++++..++++|++ .+||+||
T Consensus 441 ~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lI 514 (549)
T PRK06457 441 DLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVL 514 (549)
T ss_pred CCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEE
Confidence 999888888877 5876533211 12468877 78899999998 89999999999884 6899999
Q ss_pred EEEEec
Q psy4881 309 ETATYR 314 (423)
Q Consensus 309 ev~t~R 314 (423)
||.+.+
T Consensus 515 eV~i~~ 520 (549)
T PRK06457 515 DAIVDP 520 (549)
T ss_pred EEEeCc
Confidence 999964
No 51
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.89 E-value=4.5e-23 Score=219.75 Aligned_cols=264 Identities=15% Similarity=0.082 Sum_probs=176.1
Q ss_pred CccccccCCCCC-CCCcccccCCCccccceeeccCCceee--eeEeecCCcchhhhhhhcccCCCcccCCccccccc-cc
Q psy4881 29 TEKVFGPLDYEN-IPSEEFWGTEPRRLINKYYSKHHDVVT--DRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNK-FH 104 (423)
Q Consensus 29 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~--~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~-~~ 104 (423)
|++-.|.+++++ +.+.++.|..++...|..+++.|.++. .++.. -. . ..|.. -+.++.+|++.++ ++
T Consensus 229 t~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~-~~-----~-~~~~~--~~~~~~i~id~d~~~~ 299 (539)
T TIGR02418 229 TFQGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIE-YE-----P-RNWNS--ENDATIVHIDVEPAQI 299 (539)
T ss_pred ccccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccc-cC-----c-cccCc--CCCCeEEEEeCChHHc
Confidence 345555666554 445555555555555555665555552 22321 00 0 01110 1125668999998 57
Q ss_pred cCcc---cceeecCCCccchhhcccCC------Ccccccc-------c-----cCCCCCCCHHHHHHHHHhhccC-CeEE
Q psy4881 105 KDNV---GPLIIDGNTFPDYVLDKYTL------PTPNRSI-------T-----YPTPSTMSDSQVDKAIDKYVKE-NEYS 162 (423)
Q Consensus 105 g~nv---gpl~~d~~~vl~~~l~~~~~------~~~~r~~-------~-----~~~~~~~~p~~vi~~l~~~~~~-~~~~ 162 (423)
+++. .+|++|.+.++..++..... ...|... + .....+++|.++++++++.+++ .+++
T Consensus 300 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~ 379 (539)
T TIGR02418 300 DNNYQPDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVT 379 (539)
T ss_pred CCccCCCeEEecCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEE
Confidence 7765 47889999888776543211 1122211 1 0112358999999999999975 5778
Q ss_pred eCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcC
Q psy4881 163 QDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWN 241 (423)
Q Consensus 163 ~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~ 241 (423)
.|.|. .+| ...+.... .+++++ .++++|+||+++|+|+|++++.++++||+++|||+|++. ..| |.||++++
T Consensus 380 ~d~G~~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~ 452 (539)
T TIGR02418 380 VDMGSHYIW---MARYFRSY-RARHLL-ISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFS-SME-LETAVRLK 452 (539)
T ss_pred ECCcHHHHH---HHHhcccC-CCCcee-cCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhch-HHH-HHHHHHhC
Confidence 88554 445 22222222 233344 567788999999999999999999999999999999995 344 99999999
Q ss_pred CCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 242 IPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 242 LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
+|+++||.||+ |++.+..+.. ...+||.+ ++||+++.+|+ +++++.+++++|++ .++|+|||
T Consensus 453 lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIe 526 (539)
T TIGR02418 453 LNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVD 526 (539)
T ss_pred CCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 99888888877 6776532211 12467877 78899999998 89999999998874 68999999
Q ss_pred EEEec
Q psy4881 310 TATYR 314 (423)
Q Consensus 310 v~t~R 314 (423)
|.+.+
T Consensus 527 v~v~~ 531 (539)
T TIGR02418 527 IPVDY 531 (539)
T ss_pred EEecC
Confidence 99965
No 52
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.89 E-value=4.5e-23 Score=221.46 Aligned_cols=208 Identities=21% Similarity=0.229 Sum_probs=151.3
Q ss_pred ccccccc-cccCcc---cceeecCCCccchhhcccCC--Ccccccc-------c------c--CCCCCCCHHHHHHHHHh
Q psy4881 96 SHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPNRSI-------T------Y--PTPSTMSDSQVDKAIDK 154 (423)
Q Consensus 96 ~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~~-------~------~--~~~~~~~p~~vi~~l~~ 154 (423)
+|++.|+ +++++. .+|++|.+.++..++..... ...|... + . ....+++|.++++.|++
T Consensus 291 I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 370 (575)
T TIGR02720 291 IQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINK 370 (575)
T ss_pred EEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHH
Confidence 7898888 577765 36889998888766544321 1223110 1 0 12346999999999999
Q ss_pred hccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 155 YVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 155 ~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
.+++ .+++.|.|. ..|. .++.+. ..++.++ +++.+|+||+++|+|+|++++.|+++||+++|||||++. . .
T Consensus 371 ~l~~d~ii~~D~g~~~~~~---~~~~~~-~~~~~~~-~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~-~-~ 443 (575)
T TIGR02720 371 IAEDDAIYSIDVGDININS---NRHLKM-TPKNKWI-TSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMT-M-Q 443 (575)
T ss_pred hCCCCcEEEeCCcHHHHHH---HHhCCc-CCCCeEE-cCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhh-H-H
Confidence 9975 567788553 4442 222222 1233344 677789999999999999999999999999999999995 3 4
Q ss_pred HHHHhHhcCCCEEEEEecCC-ccccccccc-----c----cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhh
Q psy4881 233 VYNIAKLWNIPCIFVCENNG-YGMGTSSER-----A----SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCR 300 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-----~----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar 300 (423)
+|.|++++++|+++||+||+ |++....+. . ...+||.+ +++|+++.+|+ +.+++.++++++++ +
T Consensus 444 eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~- 519 (575)
T TIGR02720 444 DLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I- 519 (575)
T ss_pred HHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-
Confidence 49999999999888888777 687543221 1 12467877 78899999998 78999999999875 2
Q ss_pred CCCCcEEEEEEEec
Q psy4881 301 SDKGPILLETATYR 314 (423)
Q Consensus 301 ~~~gP~lIev~t~R 314 (423)
+.++|+||||.+..
T Consensus 520 ~~~~p~liev~i~~ 533 (575)
T TIGR02720 520 KQGKPVLIDAKITG 533 (575)
T ss_pred CCCCcEEEEEEeCC
Confidence 35899999999965
No 53
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.89 E-value=1.4e-22 Score=184.97 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCC
Q psy4881 145 DSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGD 222 (423)
Q Consensus 145 p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GD 222 (423)
|+++++++++.+++ .++++|.|. ++|.. .+.+. +.+++++ ++++.|+||+++|+|+|++++.++++|+|++||
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~---~~~~~-~~p~~~~-~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GD 75 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWAR---YILRP-RKPRHRL-DAGTFGTLGVGLGYAIAAALARPDKRVVLVEGD 75 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHH---HHccc-cCCCcEe-cCCCCCcccchHHHHHHHHHhCCCCeEEEEEcc
Confidence 67899999999975 578888543 44522 11122 1233344 677789999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccccc-----------CCchhhh--hcCCCCeEEeeCCCHHHH
Q psy4881 223 GAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERAS-----------ASVDYYT--RGDYIPGIWVDGMDILAV 288 (423)
Q Consensus 223 Ga~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~-----------~~~~~~~--~a~G~~~~~VdG~d~~~v 288 (423)
|+++++ .++|++|++++||+++||.||+ |++.+..++.. ..++|.+ +++|+++.+|+ +++++
T Consensus 76 G~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el 151 (172)
T cd02004 76 GAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEEL 151 (172)
T ss_pred hhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHH
Confidence 999985 4669999999999888887765 78877654421 3467876 67899999999 68898
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 289 REAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 289 ~~al~~A~~~ar~~~gP~lIev~t 312 (423)
.++++++++ .++|+|||+.+
T Consensus 152 ~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 152 KPALKRALA----SGKPALINVII 171 (172)
T ss_pred HHHHHHHHH----cCCCEEEEEEc
Confidence 888888774 58999999986
No 54
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.89 E-value=6.2e-23 Score=220.47 Aligned_cols=210 Identities=17% Similarity=0.130 Sum_probs=151.9
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccC--CCccccc-------cc-------c----CCCCCCCHHHH
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT--LPTPNRS-------IT-------Y----PTPSTMSDSQV 148 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~--~~~~~r~-------~~-------~----~~~~~~~p~~v 148 (423)
...+|+++++ +++++. ..|.+|++.++..++.... ....|.. .+ . ....+++|..+
T Consensus 285 ~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (578)
T PRK06546 285 VRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYV 364 (578)
T ss_pred CcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHH
Confidence 4568999999 577765 3678888888776644321 1122311 10 0 11246899999
Q ss_pred HHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccc
Q psy4881 149 DKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAAN 226 (423)
Q Consensus 149 i~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~ 226 (423)
++.|+..+++ .++++|.|. .+|.... .... .+++++ .++.+|+||+++++|+|++++.++++|||++|||+|+
T Consensus 365 ~~~l~~~l~~~~ivv~d~G~~~~~~~~~---~~~~-~~~~~~-~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~ 439 (578)
T PRK06546 365 ASILDELAADDAVFTVDTGMCNVWAARY---ITPN-GRRRVI-GSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLS 439 (578)
T ss_pred HHHHHHhccCCcEEEECCcHHHHHHHHh---cCCC-CCceEE-ccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHh
Confidence 9999999975 577788554 4452221 1111 223333 5677899999999999999999999999999999999
Q ss_pred hhhHHHHHHHhHhcCCCEEEEEecCCc-cccccccc---------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHH
Q psy4881 227 QGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSER---------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARF 294 (423)
Q Consensus 227 ~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~---------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~ 294 (423)
++ ..| |.||+++++|+++||+||+. ++.+..+. ....+||.+ +++|+++.+|+ ++++|.+++++
T Consensus 440 ~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~ 515 (578)
T PRK06546 440 ML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALRE 515 (578)
T ss_pred hh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHH
Confidence 85 344 99999999999999998884 87642221 123468887 67899999998 89999999998
Q ss_pred HHHHhhCCCCcEEEEEEEecC
Q psy4881 295 AVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 295 A~~~ar~~~gP~lIev~t~R~ 315 (423)
|++ .+||+||||.+.+.
T Consensus 516 a~~----~~gp~lIev~~~~~ 532 (578)
T PRK06546 516 AFA----HPGPALVDVVTDPN 532 (578)
T ss_pred HHh----CCCCEEEEEEeCCC
Confidence 874 68999999998653
No 55
>PLN02573 pyruvate decarboxylase
Probab=99.89 E-value=9e-23 Score=219.21 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=170.4
Q ss_pred CCccccccCCCCCCCCcccc-cCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhc-ccCCCcccCCccccccc-
Q psy4881 28 TTEKVFGPLDYENIPSEEFW-GTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCW-KSKKFPFCDNSHKYHNK- 102 (423)
Q Consensus 28 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~-rs~~~p~cdg~H~~~~~- 102 (423)
||++-.|.++++||++.++. |..+....|..+++.|.++ +.+|+.- . .+ .+...+.++.+|+++|+
T Consensus 257 tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~-------~--~~~~~~~~~~~~~I~id~d~~ 327 (578)
T PLN02573 257 VMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDY-------S--SVGYSLLLKKEKAIIVQPDRV 327 (578)
T ss_pred ECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCc-------c--cccccccCCCCcEEEEeCCEE
Confidence 34445555555555555543 4444445555555555555 3445420 0 11 11122456778999999
Q ss_pred cccCcc-cceeecCCCccchhhcccCC-C---ccccccc------c--CCCCCCCHHHHHHHHHhhccC-CeEEeCCCCc
Q psy4881 103 FHKDNV-GPLIIDGNTFPDYVLDKYTL-P---TPNRSIT------Y--PTPSTMSDSQVDKAIDKYVKE-NEYSQDSDEN 168 (423)
Q Consensus 103 ~~g~nv-gpl~~d~~~vl~~~l~~~~~-~---~~~r~~~------~--~~~~~~~p~~vi~~l~~~~~~-~~~~~d~g~~ 168 (423)
+++++. ..+. |.+.++..++..... . ..|+... . ....+++|+++++.|++.+++ ++++.|.|..
T Consensus 328 ~i~~~~~~~~~-~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~ 406 (578)
T PLN02573 328 TIGNGPAFGCV-LMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDS 406 (578)
T ss_pred EECCcceECCc-CHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccc
Confidence 577754 2222 555555544443211 1 1222111 1 123459999999999998865 5788886654
Q ss_pred cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEE
Q psy4881 169 MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVC 248 (423)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv 248 (423)
++. +. .... +.+..++ .++++|+||+++|+|+|++++.++++||+++|||+|+|.. .| |.||+++++|+++||
T Consensus 407 ~~~-~~--~~~~-~~~~~~~-~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~-~E-L~Ta~r~~lpvv~vV 479 (578)
T PLN02573 407 WFN-CQ--KLKL-PEGCGYE-FQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTA-QD-VSTMIRCGQKSIIFL 479 (578)
T ss_pred hhh-HH--hccC-CCCCeEE-eecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHH-HH-HHHHHHcCCCCEEEE
Confidence 331 11 1111 1122233 5677899999999999999999999999999999999953 44 999999999999888
Q ss_pred ecCC-ccccccccc----ccCCchhhh--hcCC-----CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 249 ENNG-YGMGTSSER----ASASVDYYT--RGDY-----IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 249 ~NN~-~gi~~~~~~----~~~~~~~~~--~a~G-----~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
+||+ |++.+..+. ....++|.+ ++|| +++.+|+ +.+++.+++++|++. ..++|+||||.+.
T Consensus 480 ~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 480 INNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred EeCCceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 8887 587654321 113467877 5664 8899999 799999999998742 2488999999984
No 56
>PRK08322 acetolactate synthase; Reviewed
Probab=99.89 E-value=1.2e-22 Score=216.78 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=150.8
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccCCCcccc--------ccc------c-C-CCCCCCHHHHHHHH
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTLPTPNR--------SIT------Y-P-TPSTMSDSQVDKAI 152 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~~~~~r--------~~~------~-~-~~~~~~p~~vi~~l 152 (423)
+...|+++|+ +++++. .++++|.+.++..++....+...|. ..+ . . ...+++|.++++.+
T Consensus 287 ~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 366 (547)
T PRK08322 287 KKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADL 366 (547)
T ss_pred CeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHH
Confidence 4567998888 466654 4888899888877655332111121 100 0 1 12358999999999
Q ss_pred HhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhH
Q psy4881 153 DKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQV 230 (423)
Q Consensus 153 ~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~ 230 (423)
++.+++ ++++.|.|. .+|. .++.... .+++++ .++++|+||+++|+|+|++++.|+++||+++||||+++..
T Consensus 367 ~~~l~~~~ii~~d~G~~~~~~---~~~~~~~-~~~~~~-~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~- 440 (547)
T PRK08322 367 RKVMPDDDIVILDNGAYKIWF---ARNYRAY-EPNTCL-LDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNS- 440 (547)
T ss_pred HHHCCCCeEEEECCcHHHHHH---HHhcccC-CCCCEE-cCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccH-
Confidence 999975 577788554 3442 1111111 233344 5677899999999999999999999999999999999853
Q ss_pred HHHHHHhHhcCCCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHH
Q psy4881 231 FEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNH 298 (423)
Q Consensus 231 ~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ 298 (423)
.+|.||+++++|+++||.||+ |++.+..+.. ...+||.+ +++|+++++|+ +.+++.++++++++
T Consensus 441 -~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~- 516 (547)
T PRK08322 441 -QELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA- 516 (547)
T ss_pred -HHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh-
Confidence 449999999999888888777 6876543221 12468887 78899999998 89999999998874
Q ss_pred hhCCCCcEEEEEEEec
Q psy4881 299 CRSDKGPILLETATYR 314 (423)
Q Consensus 299 ar~~~gP~lIev~t~R 314 (423)
.++|+||||.+.+
T Consensus 517 ---~~~p~lIev~v~~ 529 (547)
T PRK08322 517 ---QPGVHVIDCPVDY 529 (547)
T ss_pred ---CCCCEEEEEEecC
Confidence 5899999999864
No 57
>PRK08617 acetolactate synthase; Reviewed
Probab=99.89 E-value=5.3e-23 Score=219.80 Aligned_cols=210 Identities=15% Similarity=0.100 Sum_probs=151.8
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccCC------Cccccccc----------c--CCCCCCCHHHHH
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL------PTPNRSIT----------Y--PTPSTMSDSQVD 149 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~------~~~~r~~~----------~--~~~~~~~p~~vi 149 (423)
.++.+|++.++ .++++. .+|.+|++.++..++..... ..+|...| . ....+++|.+++
T Consensus 292 ~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 371 (552)
T PRK08617 292 DATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRII 371 (552)
T ss_pred CCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHH
Confidence 45678999988 577765 48889998887776543221 11232111 0 122458999999
Q ss_pred HHHHhhccC-CeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccch
Q psy4881 150 KAIDKYVKE-NEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQ 227 (423)
Q Consensus 150 ~~l~~~~~~-~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~ 227 (423)
+.|++.+++ .+++.|.| +..| ...+.+.. .++.++ .++++|+||+++|+|+|++++.++++|||++|||||+|
T Consensus 372 ~~l~~~l~~~~ii~~d~G~~~~~---~~~~~~~~-~p~~~~-~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m 446 (552)
T PRK08617 372 RALQDIVTDDTTVTVDVGSHYIW---MARYFRSY-EPRHLL-FSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLF 446 (552)
T ss_pred HHHHHhcCCCcEEEeCCcHHHHH---HHHhcccc-CCCeEE-ecCccccccccccHHHhhHhhcCCCcEEEEEechHHhh
Confidence 999999976 46777854 4444 22111222 233344 45667899999999999999999999999999999998
Q ss_pred hhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHH
Q psy4881 228 GQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFA 295 (423)
Q Consensus 228 G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A 295 (423)
.. .+|.||+++++|+++||.||+ |++.+..+.. ...+||.+ +++|+++++|+ +++++.+++++|
T Consensus 447 ~~--~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a 522 (552)
T PRK08617 447 SA--MELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREA 522 (552)
T ss_pred hH--HHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHH
Confidence 53 449999999999988888777 5776533211 12467877 78899999998 899999999888
Q ss_pred HHHhhCCCCcEEEEEEEec
Q psy4881 296 VNHCRSDKGPILLETATYR 314 (423)
Q Consensus 296 ~~~ar~~~gP~lIev~t~R 314 (423)
+ +.++|+||||.+.+
T Consensus 523 ~----~~~~p~liev~~~~ 537 (552)
T PRK08617 523 L----ATDGPVVIDIPVDY 537 (552)
T ss_pred H----hCCCcEEEEEEecc
Confidence 7 45799999999965
No 58
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.89 E-value=3.7e-23 Score=223.13 Aligned_cols=213 Identities=19% Similarity=0.218 Sum_probs=155.8
Q ss_pred hhhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHhh
Q psy4881 79 EAICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDKY 155 (423)
Q Consensus 79 ~~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~~ 155 (423)
..+|...|...+ ...+++|+ |.+++.+.+ ..+|+++++.+.+|..| .+|+.|. +..+
T Consensus 19 ~~la~~iR~~~i~~~~~~~GH~------g~~ls~vel------~~aL~~~~~~~rDr~i~s~GH~~Y~--------~~~~ 78 (617)
T TIGR00204 19 EKLCDELRRYLLESVSASGGHL------ASGLGTVEL------TVALHYVFNTPKDQFIWDVGHQAYP--------HKLL 78 (617)
T ss_pred HHHHHHHHHHHHHHHhccCCCc------CcchhHHHH------HHHHHhhCCCCCCcEEEecchHHHH--------HHHH
Confidence 367888888777 45788898 999988765 67777788877777666 3777654 2223
Q ss_pred c-cCCeEEeCC--CCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 156 V-KENEYSQDS--DENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 156 ~-~~~~~~~d~--g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
+ +.+.+.+-. ++ .++++.+.++.++. +.++++++++++|+|+|+|.|+++.+.+|+|++|||++++|.+||
T Consensus 79 ~G~~~~l~~~r~~g~--l~g~p~~~e~~~d~----~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~E 152 (617)
T TIGR00204 79 TGRREKFSTLRQKKG--LHGFPKRSESEYDV----FSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFE 152 (617)
T ss_pred hCcHHHhcchhhcCC--cCCCCcCCCCCCCc----cCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHH
Confidence 3 222232221 22 23345544443322 223444456999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEEecCCcccccccccccC------------------------Cc---h-hhh--------------
Q psy4881 233 VYNIAKLWNIPCIFVCENNGYGMGTSSERASA------------------------SV---D-YYT-------------- 270 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~------------------------~~---~-~~~-------------- 270 (423)
+||+|+.++||+|+||+||+++++++....+. .+ . +.+
T Consensus 153 a~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 232 (617)
T TIGR00204 153 ALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGT 232 (617)
T ss_pred HHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccc
Confidence 99999999999999999999999887652210 00 1 211
Q ss_pred --hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCC
Q psy4881 271 --RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 321 (423)
Q Consensus 271 --~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~ 321 (423)
+++|+..+ +|||||++++.++++++. +.++|++|+++|.|++|++..
T Consensus 233 ~f~~~G~~~~~~vDGhd~~~l~~al~~ak----~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 233 FFEELGFNYIGPVDGHDLLELIETLKNAK----KLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hHHHcCCcEEcccCCCCHHHHHHHHHHHh----cCCCCEEEEEEecCCCCCchh
Confidence 34688888 899999999999998665 467899999999999997643
No 59
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.88 E-value=1.2e-22 Score=217.89 Aligned_cols=261 Identities=17% Similarity=0.191 Sum_probs=173.2
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
.||.+| |+++|.++..+...++....++|.++-++- +++. ........+ +..+.+|++.
T Consensus 246 ~~~~~h--p~~~G~~G~~~~~~~~~~l~~aDlvl~lG~---------~~~~---------~~~~~~~~~~~~~~~I~id~ 305 (574)
T PRK06882 246 AYPSTD--KQFLGMLGMHGTYEANNAMHESDLILGIGV---------RFDD---------RTTNNLAKYCPNAKVIHIDI 305 (574)
T ss_pred CCCCCC--hhhcCCCcccccHHHHHHHHhCCEEEEECC---------CCCc---------cccCchhhcCCCCeEEEEEC
Confidence 456666 666666555444444444444444444443 3432 001111112 3456789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccCC---------Ccccc-------cccc----CCCCCCCHHHHHHHHHhhc
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---------PTPNR-------SITY----PTPSTMSDSQVDKAIDKYV 156 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---------~~~~r-------~~~~----~~~~~~~p~~vi~~l~~~~ 156 (423)
|+ .++++. .+|.+|++.++..++..... ...|. ..+. .....++|..+++.+++++
T Consensus 306 d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l 385 (574)
T PRK06882 306 DPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLT 385 (574)
T ss_pred CHHHhcCccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhhccCCCCcCHHHHHHHHHhhc
Confidence 98 577765 47899998888776543211 12221 1110 1123589999999999988
Q ss_pred cC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH
Q psy4881 157 KE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY 234 (423)
Q Consensus 157 ~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL 234 (423)
++ .+++.|.|. ..| ..+.... +.++.++ .++++|+||+++|+|+|++++.++++||+++|||+|++. .++|
T Consensus 386 ~~~~ii~~d~g~~~~~---~~~~~~~-~~p~~~~-~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~--~~eL 458 (574)
T PRK06882 386 NGDAYVASDVGQHQMF---AALHYPF-DKPRRWI-NSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMN--IQEL 458 (574)
T ss_pred CCCeEEEecCchhHHH---HHHhccc-cCCCcEE-eCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhcc--HHHH
Confidence 75 467777554 334 2111122 1233344 677889999999999999999999999999999999985 3669
Q ss_pred HHhHhcCCCEEEEEecCC-cccccccccc-----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhh
Q psy4881 235 NIAKLWNIPCIFVCENNG-YGMGTSSERA-----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCR 300 (423)
Q Consensus 235 n~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar 300 (423)
.||+++++|+++||+||+ |++.+..+.. ...++|.+ ++||+++++|+ +.+++.+++++|++.
T Consensus 459 ~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~-- 534 (574)
T PRK06882 459 STAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI-- 534 (574)
T ss_pred HHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--
Confidence 999999999999999888 4765433211 12367876 78899999998 799999999988852
Q ss_pred CCCCcEEEEEEEec
Q psy4881 301 SDKGPILLETATYR 314 (423)
Q Consensus 301 ~~~gP~lIev~t~R 314 (423)
.++|+||||.+.+
T Consensus 535 -~~~p~liev~i~~ 547 (574)
T PRK06882 535 -KDKLVFVDVNVDE 547 (574)
T ss_pred -CCCcEEEEEEecC
Confidence 3789999999976
No 60
>PRK05858 hypothetical protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=216.74 Aligned_cols=209 Identities=16% Similarity=0.073 Sum_probs=153.1
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccCC---Ccccccc-------cc--------CCCCCCCHHHHHH
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRSI-------TY--------PTPSTMSDSQVDK 150 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~~-------~~--------~~~~~~~p~~vi~ 150 (423)
++.+|+++|+ +++++. ..+.+|.+.++..++..... ...|... +. ....+++|.++++
T Consensus 286 ~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (542)
T PRK05858 286 AQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYG 365 (542)
T ss_pred CEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHH
Confidence 5678999998 577755 48888988877766543221 1223211 10 1224689999999
Q ss_pred HHHhhccCC-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchh
Q psy4881 151 AIDKYVKEN-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQG 228 (423)
Q Consensus 151 ~l~~~~~~~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G 228 (423)
.+++.++++ +++.|.|. ..| ...+.+.. .++.++ .++++|+||+++|+|+|++++.|+++||+++|||++++.
T Consensus 366 ~l~~~l~~~~ivv~d~g~~~~~---~~~~~~~~-~p~~~~-~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~ 440 (542)
T PRK05858 366 ELAPLLDRDAIVIGDGGDFVSY---AGRYIDPY-RPGCWL-DPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFS 440 (542)
T ss_pred HHHHhcCCCeEEEECCcHHHHH---HHHHcccc-CCCCEE-eCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCc
Confidence 999999764 67777554 333 22222222 233344 677789999999999999999999999999999999985
Q ss_pred hHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHH
Q psy4881 229 QVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFA 295 (423)
Q Consensus 229 ~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A 295 (423)
.+| |.||+++++|+++||+||+ |++....+.. ...+||.+ ++||+.+.+|+ +++++.+++++|
T Consensus 441 -~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a 516 (542)
T PRK05858 441 -LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERA 516 (542)
T ss_pred -HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH
Confidence 345 9999999999999988887 6876533221 13578887 78999999999 899999999998
Q ss_pred HHHhhCCCCcEEEEEEEec
Q psy4881 296 VNHCRSDKGPILLETATYR 314 (423)
Q Consensus 296 ~~~ar~~~gP~lIev~t~R 314 (423)
++ .++|+|||+.|.+
T Consensus 517 ~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 517 FA----SGVPYLVNVLTDP 531 (542)
T ss_pred Hh----CCCcEEEEEEECC
Confidence 84 6899999999964
No 61
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.88 E-value=1.2e-22 Score=217.31 Aligned_cols=263 Identities=18% Similarity=0.188 Sum_probs=174.6
Q ss_pred ccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhccc-CCCcccCCccccccc-ccc
Q psy4881 30 EKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKS-KKFPFCDNSHKYHNK-FHK 105 (423)
Q Consensus 30 ~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs-~~~p~cdg~H~~~~~-~~g 105 (423)
+.-.|.++++||.+.++.|..+....|..+++.|.++ +.+++. .. .... ..++.+..+|++.++ .++
T Consensus 236 ~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~-------~~--~~~~~~~~~~~~~i~id~d~~~~~ 306 (558)
T TIGR00118 236 LMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDD-------RV--TGNLAKFAPNAKIIHIDIDPAEIG 306 (558)
T ss_pred cccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCc-------cc--cCchhhcCCCCcEEEEeCCHHHhC
Confidence 3444444444444444444444444555555555544 233431 01 1111 122445678999988 567
Q ss_pred Ccc---cceeecCCCccchhhcccCC-----Ccccccc-------cc----CCCCCCCHHHHHHHHHhhccC-CeEEeCC
Q psy4881 106 DNV---GPLIIDGNTFPDYVLDKYTL-----PTPNRSI-------TY----PTPSTMSDSQVDKAIDKYVKE-NEYSQDS 165 (423)
Q Consensus 106 ~nv---gpl~~d~~~vl~~~l~~~~~-----~~~~r~~-------~~----~~~~~~~p~~vi~~l~~~~~~-~~~~~d~ 165 (423)
++. .+|.+|.+.++..++..... ...|... +. ....+++|.++++.+++++++ .+++.|.
T Consensus 307 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~ 386 (558)
T TIGR00118 307 KNVRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYPLKMDYTEEGIKPQQVIEELSRVTKDEAIVTTDV 386 (558)
T ss_pred CcCCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCCCCeEEEeCC
Confidence 654 48889999988777554321 1234211 10 123468999999999999976 4677786
Q ss_pred CCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCE
Q psy4881 166 DEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPC 244 (423)
Q Consensus 166 g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPv 244 (423)
|.. .| ...+.+.. .++.++ +++++|+||+++|+|+|++++.++++||+++|||+|++. .. +|.||+++++|+
T Consensus 387 g~~~~~---~~~~~~~~-~p~~~~-~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~-~~-eL~ta~~~~l~~ 459 (558)
T TIGR00118 387 GQHQMW---AAQFYPFR-KPRRFI-TSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMN-LQ-ELSTAVQYDIPV 459 (558)
T ss_pred cHHHHH---HHHhcccC-CCCeEE-eCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCe
Confidence 543 33 11111211 233344 677889999999999999999999999999999999985 34 499999999999
Q ss_pred EEEEecCCc-cccccccc-----------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 245 IFVCENNGY-GMGTSSER-----------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 245 i~Vv~NN~~-gi~~~~~~-----------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
++||+||+. ++....++ ....+||.+ +++|+++++|+ +.+++.+++++|++ .+||+||||
T Consensus 460 ~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev 533 (558)
T TIGR00118 460 KILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDV 533 (558)
T ss_pred EEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEE
Confidence 999999985 65442211 112468887 67899999998 68999999998884 589999999
Q ss_pred EEec
Q psy4881 311 ATYR 314 (423)
Q Consensus 311 ~t~R 314 (423)
.+.+
T Consensus 534 ~~~~ 537 (558)
T TIGR00118 534 VVDK 537 (558)
T ss_pred EeCC
Confidence 9965
No 62
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.88 E-value=5.3e-22 Score=213.25 Aligned_cols=211 Identities=18% Similarity=0.177 Sum_probs=151.0
Q ss_pred cccCCccccccc-cccCcc--cceeecCCCccchhhcccCC---------Cccccc-------cc--------cCCCCCC
Q psy4881 91 PFCDNSHKYHNK-FHKDNV--GPLIIDGNTFPDYVLDKYTL---------PTPNRS-------IT--------YPTPSTM 143 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv--gpl~~d~~~vl~~~l~~~~~---------~~~~r~-------~~--------~~~~~~~ 143 (423)
+.++.+|++.|+ +++++. .+|.+|++.+++.++..... ...|.. .+ ......+
T Consensus 308 ~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (578)
T PRK06112 308 EQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPI 387 (578)
T ss_pred CCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCc
Confidence 446778999988 566654 47888998888776543211 011211 11 0122468
Q ss_pred CHHHHHHHHHhhccC-CeEEeCCC-Ccccc-ccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEe
Q psy4881 144 SDSQVDKAIDKYVKE-NEYSQDSD-ENMTN-QLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALY 220 (423)
Q Consensus 144 ~p~~vi~~l~~~~~~-~~~~~d~g-~~~~~-~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~ 220 (423)
+|.++++.+++.+++ .+++.|.| .++|. ++. ... .++..+.+++++|+||+++|+|+|+++++++++|||++
T Consensus 388 ~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~----~~~-~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~ 462 (578)
T PRK06112 388 RPERIMAELQAVLTGDTIVVADASYSSIWVANFL----TAR-RAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLV 462 (578)
T ss_pred CHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhc----Ccc-CCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEE
Confidence 999999999999975 57778855 34442 222 111 11212336677889999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccc----------cCCchhhh--hcCCCCeEEeeCCCHHH
Q psy4881 221 GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERA----------SASVDYYT--RGDYIPGIWVDGMDILA 287 (423)
Q Consensus 221 GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~----------~~~~~~~~--~a~G~~~~~VdG~d~~~ 287 (423)
|||++++. .++|++|+++++|+++||.||+. |+....+.. ...++|.+ +++|+++++|+ ++++
T Consensus 463 GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 538 (578)
T PRK06112 463 GDGGFAHV--WAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAE 538 (578)
T ss_pred cchHHHhH--HHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 99999874 46699999999999999999984 765533221 02467776 67899999998 7899
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 288 VREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 288 v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+.+++++|+ +.+||+||||++.+
T Consensus 539 l~~al~~a~----~~~gp~lIev~~~~ 561 (578)
T PRK06112 539 LAQALAAAM----AAPGPTLIEVITDP 561 (578)
T ss_pred HHHHHHHHH----hCCCCEEEEEEcCc
Confidence 988888887 46899999999965
No 63
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.88 E-value=1.3e-21 Score=189.85 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=115.9
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccccccccc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGTSSERAS 263 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~~ 263 (423)
++...+|++|+ +|+|+|+|+|.++.+++++|+|++|||++++|.++|+|++|++++|| +++|++||+|+++.+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 34556788885 99999999999999999999999999999999999999999999998 88888899999877665444
Q ss_pred CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCC
Q psy4881 264 ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 321 (423)
Q Consensus 264 ~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~ 321 (423)
...++.+ +++|+++++|||||++++.+++++|.+. .++|++|++.|.|++||+..
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence 5567776 6789999999999999999999988742 27899999999999999843
No 64
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.87 E-value=2.4e-22 Score=216.32 Aligned_cols=211 Identities=18% Similarity=0.178 Sum_probs=152.2
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC-----Ccccccc-------cc---C-CCCCCCHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-----PTPNRSI-------TY---P-TPSTMSDSQVDK 150 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-----~~~~r~~-------~~---~-~~~~~~p~~vi~ 150 (423)
+.+..+|++.|+ .++++. .+|++|.+.++..++..... ...|... +. . .+..++|.++++
T Consensus 293 ~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 372 (586)
T PRK06276 293 PNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIK 372 (586)
T ss_pred CCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHhccccccCCCCCcCHHHHHH
Confidence 445678999888 567665 48889999888776543221 1234211 11 1 234689999999
Q ss_pred HHHhhccC-----C-eEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 151 AIDKYVKE-----N-EYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 151 ~l~~~~~~-----~-~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
++++.+++ + +++.|.|. ..|.. .+... +.+..++ +++++|+||+++|+|+|++++.++++||+++|||
T Consensus 373 ~l~~~l~~~~~~~~~iv~~d~G~~~~~~~---~~~~~-~~p~~~~-~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDG 447 (586)
T PRK06276 373 ELMEVLREIDPSKNTIITTDVGQNQMWMA---HFFKT-SAPRSFI-SSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDG 447 (586)
T ss_pred HHHHhccccCCCCCeEEEeCCcHHHHHHH---Hhccc-CCCCeEE-cCCCccccccchhHHHhhhhhcCCCcEEEEEcch
Confidence 99999875 4 67777554 33411 11111 1233344 6777899999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc------cc-----CCchhhh--hcCCCCeEEeeCCCHHHHH
Q psy4881 224 AANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER------AS-----ASVDYYT--RGDYIPGIWVDGMDILAVR 289 (423)
Q Consensus 224 a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~~-----~~~~~~~--~a~G~~~~~VdG~d~~~v~ 289 (423)
||++. ..| |.||+++++|+++||.||+ |++....++ .. ...||.+ +++|+++++|+ +++++.
T Consensus 448 sf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~ 523 (586)
T PRK06276 448 GFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIK 523 (586)
T ss_pred Hhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHH
Confidence 99986 344 9999999999999988887 676543221 11 2357877 67899999998 899999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 290 EAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 290 ~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+++++|++ .++|+||||.+.+
T Consensus 524 ~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 524 EALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHHHh----CCCCEEEEEEecc
Confidence 99998874 5799999999964
No 65
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.87 E-value=4.3e-22 Score=213.63 Aligned_cols=212 Identities=15% Similarity=0.095 Sum_probs=153.3
Q ss_pred ccCCccccccc-cccC---cc---cceeecCCCccchhhcccCC--Cc----------cccc-------ccc------CC
Q psy4881 92 FCDNSHKYHNK-FHKD---NV---GPLIIDGNTFPDYVLDKYTL--PT----------PNRS-------ITY------PT 139 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~---nv---gpl~~d~~~vl~~~l~~~~~--~~----------~~r~-------~~~------~~ 139 (423)
.++.+|+++|+ +++. +. ..|++|++.+++.++..... .. .|.. .+. ..
T Consensus 302 ~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (569)
T PRK08327 302 DARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKD 381 (569)
T ss_pred CCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCC
Confidence 36678999888 4542 32 47888999888776543211 00 2321 010 12
Q ss_pred CCCCCHHHHHHHHHhhccC-CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 140 PSTMSDSQVDKAIDKYVKE-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 140 ~~~~~p~~vi~~l~~~~~~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
..+++|.+++++|++.+++ ++++++.+ . ..++. +. +.+..++ +++++|+||+++|+|+|++++.|+++||+
T Consensus 382 ~~~i~~~~~~~~l~~~l~~~~~vv~~~~-~-~~~~~----~~-~~~~~~~-~~~~~gsmG~~lp~aiGa~la~p~~~vv~ 453 (569)
T PRK08327 382 RGPITPAYLSYCLGEVADEYDAIVTEYP-F-VPRQA----RL-NKPGSYF-GDGSAGGLGWALGAALGAKLATPDRLVIA 453 (569)
T ss_pred CCCcCHHHHHHHHHHhcCccceEEeccH-H-HHHhc----Cc-cCCCCee-eCCCCCCCCcchHHHHHHhhcCCCCeEEE
Confidence 3469999999999999976 56665532 1 11122 21 1233344 67788999999999999999999999999
Q ss_pred EeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc-------------c----c-CCchhhh--hcCCCCe
Q psy4881 219 LYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER-------------A----S-ASVDYYT--RGDYIPG 277 (423)
Q Consensus 219 ~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-------------~----~-~~~~~~~--~a~G~~~ 277 (423)
++|||+|+++...++|+||+++++|+++||+||+ |++.+..+. . . ..+||.+ +++|+++
T Consensus 454 i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~ 533 (569)
T PRK08327 454 TVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYG 533 (569)
T ss_pred EecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCc
Confidence 9999999987533469999999999999999885 787653211 1 1 2457776 7889999
Q ss_pred EEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 278 IWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 278 ~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
++|+ +++++.+++++|++.+++++||+||||.+.
T Consensus 534 ~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 534 ERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred eEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 9998 899999999999987777789999999873
No 66
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.87 E-value=2.2e-22 Score=217.84 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=154.6
Q ss_pred hhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHhhc
Q psy4881 80 AICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDKYV 156 (423)
Q Consensus 80 ~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~~~ 156 (423)
.+|.+.|...+ ....++|+ |.+++.+.+ ..+|+++++.+.+|..| .+|+.|. +..++
T Consensus 28 ~~a~~iR~~ii~~~~~~~GH~------g~~ls~vel------~~aL~~~~~~prDr~i~s~GH~~Y~--------~~~l~ 87 (641)
T PRK12571 28 QLADELRAEVISAVSETGGHL------GSSLGVVEL------TVALHAVFNTPKDKLVWDVGHQCYP--------HKILT 87 (641)
T ss_pred HHHHHHHHHHHHHHHHhCCCc------CCCchHHHH------HHHHHHhcCCCCCcEEEECchHHHH--------HHHHh
Confidence 56777887776 44557998 889987765 66667778777777666 4777643 22333
Q ss_pred -cCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHH
Q psy4881 157 -KENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235 (423)
Q Consensus 157 -~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn 235 (423)
+.+.+.+-.+....++++.+.+..++ .+..++++|+||+|+|+|+|++++++++.|+|++|||++++|.+||+|+
T Consensus 88 g~~~~l~~~r~~~~l~g~p~~~e~~~~----~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~ 163 (641)
T PRK12571 88 GRRDRFRTLRQKGGLSGFTKRSESEYD----PFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALN 163 (641)
T ss_pred CCHHHHhhhhhCCCcCCCCCCCcCCCC----CcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHH
Confidence 22222222111001234444333221 1224556778999999999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEEecCCcccccccccc-------cCCchh-----------------------------------hh--h
Q psy4881 236 IAKLWNIPCIFVCENNGYGMGTSSERA-------SASVDY-----------------------------------YT--R 271 (423)
Q Consensus 236 ~A~~~~LPvi~Vv~NN~~gi~~~~~~~-------~~~~~~-----------------------------------~~--~ 271 (423)
+|+.+++|+++|++||+++++.+.... .....| .. +
T Consensus 164 ~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 243 (641)
T PRK12571 164 NAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFE 243 (641)
T ss_pred HHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHH
Confidence 999999999999999999988877411 111111 01 5
Q ss_pred cCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 272 GDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 272 a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
++|+.++ +|||||.+++.+|+++|.+ ..++|++|+++|.+++|.+.
T Consensus 244 a~G~~~~~~vdGhd~~~l~~al~~ak~---~~~~P~~I~~~T~kGkG~~~ 290 (641)
T PRK12571 244 ELGFTYVGPIDGHDMEALLSVLRAARA---RADGPVLVHVVTEKGRGYAP 290 (641)
T ss_pred HcCCEEECccCCCCHHHHHHHHHHHHh---CCCCCEEEEEEecCccCcch
Confidence 7899999 8999999999999988763 14789999999999999873
No 67
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.87 E-value=3.8e-22 Score=214.01 Aligned_cols=216 Identities=16% Similarity=0.129 Sum_probs=157.8
Q ss_pred hhhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHhh
Q psy4881 79 EAICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDKY 155 (423)
Q Consensus 79 ~~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~~ 155 (423)
..+|.+.|.+.+ .+..++|+ |.+++.+.+ .++|+++++.+.+|..| .+|+.|. +..+
T Consensus 85 ~~la~eiR~~ii~~~~~~~GHl------gssLs~vEl------~~aL~~vf~~p~DriI~s~GHqaya--------~~~l 144 (641)
T PLN02234 85 KVLSDELRSDVIFNVSKTGGHL------GSNLGVVEL------TVALHYIFNTPHDKILWDVGHQSYP--------HKIL 144 (641)
T ss_pred HHHHHHHHHHHHHHHhhcCCCc------cccchHHHH------HHHHHHhcCCCCCeEEEecchhHHH--------HHHH
Confidence 478888888777 45668898 999988876 77788888888888777 4787755 4444
Q ss_pred c-cCCeEEeC--CCCccccccccccccccccCCeeeecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 156 V-KENEYSQD--SDENMTNQLVTVTNQLVTVTNQLVTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 156 ~-~~~~~~~d--~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+ +.+.+.+- .++. +++..+.++.+ ...++|.+| ++++|+|+|+|+++++.+..|+|++|||++++|+.|
T Consensus 145 tgr~~~l~t~r~~ggl--~G~p~~~es~~-----d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~w 217 (641)
T PLN02234 145 TGRRGKMKTIRQTNGL--SGYTKRRESEH-----DSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAY 217 (641)
T ss_pred HhhhhhhcccccCCCc--CCCCCCCCCCC-----cEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHH
Confidence 4 22223322 1222 33555544433 233456666 599999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEEecCCccccc---------cccccc-------CCc-----hhhh--hcCCCCeE-EeeCCCHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNGYGMGT---------SSERAS-------ASV-----DYYT--RGDYIPGI-WVDGMDILA 287 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~~gi~~---------~~~~~~-------~~~-----~~~~--~a~G~~~~-~VdG~d~~~ 287 (423)
|||+.|+..+-++|+|+++|++.+.. ...... .++ +... +++|+..+ +|||||+++
T Consensus 218 EAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~ 297 (641)
T PLN02234 218 EAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDD 297 (641)
T ss_pred HHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHH
Confidence 99999998787899999999983221 111110 011 1122 67899999 999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCC
Q psy4881 288 VREAARFAVNHCRSDKGPILLETATYRYSGHSMSDP 323 (423)
Q Consensus 288 v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~ 323 (423)
+.++++++.+. +.++|++|++.|.+++|.+....
T Consensus 298 l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 298 LVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 99999887531 23589999999999999885443
No 68
>PRK07064 hypothetical protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=212.69 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=146.2
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccCC----Cccccccc-------cC-CCCCCCHH-HHHHHHHhh
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL----PTPNRSIT-------YP-TPSTMSDS-QVDKAIDKY 155 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~----~~~~r~~~-------~~-~~~~~~p~-~vi~~l~~~ 155 (423)
+..+|+++|+ +++.+. .++.+|.+.+++.++..... .+.|...+ .. ....+.|. ++++.+++.
T Consensus 289 ~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 368 (544)
T PRK07064 289 RPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAVADLRKGLGPYAKLVDALRAA 368 (544)
T ss_pred CceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHh
Confidence 4568999988 466544 37888998888777554321 12343221 11 11235565 599999999
Q ss_pred ccC-CeEEeCCCC--ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 156 VKE-NEYSQDSDE--NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 156 ~~~-~~~~~d~g~--~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
+++ .+++.|.+. ..|. ..+.+.. .++.++ ++++ |+||+++|+|+|++++.++++||+++|||||++.. .
T Consensus 369 l~~~~ii~~d~~~~~~~~~---~~~~~~~-~p~~~~-~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~--~ 440 (544)
T PRK07064 369 LPRDGNWVRDVTISNSTWG---NRLLPIF-EPRANV-HALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNL--G 440 (544)
T ss_pred CCCCCEEEeCCccchHHHH---HHhcCcc-CCCcee-ccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhH--H
Confidence 875 577788542 3341 1111222 223233 3444 77999999999999999999999999999999853 4
Q ss_pred HHHHhHhcCCCEEEEEecCC-cccccccccc----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHh
Q psy4881 233 VYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~a 299 (423)
+|.||+++++|+++||.||+ |++.+..+.. ...++|.+ ++||+++.+|+ +++++.+++++|++
T Consensus 441 eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~-- 516 (544)
T PRK07064 441 ELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA-- 516 (544)
T ss_pred HHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc--
Confidence 59999999999888888777 6876543311 12468877 78899999998 79999999998873
Q ss_pred hCCCCcEEEEEEEec
Q psy4881 300 RSDKGPILLETATYR 314 (423)
Q Consensus 300 r~~~gP~lIev~t~R 314 (423)
.+||+||||.++.
T Consensus 517 --~~~p~lIeV~~~~ 529 (544)
T PRK07064 517 --KEGPVLVEVDMLS 529 (544)
T ss_pred --CCCCEEEEEEccc
Confidence 6799999999863
No 69
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.87 E-value=8e-22 Score=211.01 Aligned_cols=209 Identities=15% Similarity=0.081 Sum_probs=148.9
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccC-CCcccccc----------cc---CCCCCCCHHHHHHHHH
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT-LPTPNRSI----------TY---PTPSTMSDSQVDKAID 153 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~-~~~~~r~~----------~~---~~~~~~~p~~vi~~l~ 153 (423)
.+..+|++.|+ .++++. ..|.+|.+.+++.++.... ....|... +. .+..+++|.++++.|+
T Consensus 298 ~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (557)
T PRK08199 298 RQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLAWSAPLPGPGAVQLGEVMAWLR 377 (557)
T ss_pred CCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhhccccCCCCCcCHHHHHHHHH
Confidence 35678998888 467654 3788888888877654321 12334210 11 1223589999999999
Q ss_pred hhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 154 KYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 154 ~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+.+++ .+++.|.|. ..| ..++.+.. .++.++ . .++|+||+++|+|+|++++.++++|||++|||+|++. .
T Consensus 378 ~~l~~~~ii~~d~g~~~~~---~~~~~~~~-~~~~~~-~-~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~--~ 449 (557)
T PRK08199 378 ERLPADAIITNGAGNYATW---LHRFFRFR-RYRTQL-A-PTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMN--G 449 (557)
T ss_pred HhCCCCeEEEECChHHHHH---HHHhcCcC-CCCeEE-C-CCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhcc--H
Confidence 99975 567777554 333 21112222 223333 2 3458899999999999999999999999999999885 3
Q ss_pred HHHHHhHhcCCCEEEEEecCC-cccccccccc----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNH 298 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ 298 (423)
++|.+|+++++|+++||+||+ |++....+.. ...+||.+ ++||+++.+|+ +++++.+++++++
T Consensus 450 ~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-- 525 (557)
T PRK08199 450 QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL-- 525 (557)
T ss_pred HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH--
Confidence 569999999999999999998 6765432211 12367877 68899999999 7889988888887
Q ss_pred hhCCCCcEEEEEEEec
Q psy4881 299 CRSDKGPILLETATYR 314 (423)
Q Consensus 299 ar~~~gP~lIev~t~R 314 (423)
+.+||+||||.+.+
T Consensus 526 --~~~gp~li~v~~~~ 539 (557)
T PRK08199 526 --ASGKPALIEIRIDP 539 (557)
T ss_pred --hCCCCEEEEEEeCH
Confidence 36899999999965
No 70
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.87 E-value=1.6e-21 Score=182.11 Aligned_cols=123 Identities=26% Similarity=0.310 Sum_probs=104.7
Q ss_pred eecCCCCCC-cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 188 VTVTNQLVT-VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 188 ~~~sg~~g~-l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
..++|.+|+ +|+|+|+|+|.|+++++++|+|++|||++++|.+||+|++|+.+++|+++||+||+++++++.+. ..
T Consensus 71 ~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~---~~ 147 (195)
T cd02007 71 AFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT---PG 147 (195)
T ss_pred eECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC---HH
Confidence 346777774 99999999999999999999999999999999999999999999999999999999998876651 11
Q ss_pred hhhhhcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCC
Q psy4881 267 DYYTRGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 318 (423)
Q Consensus 267 ~~~~~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH 318 (423)
+.. +++|+... +|||+|++++.+++++|+ +.++|++|++.|.+++|.
T Consensus 148 ~~~-~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 148 NLF-EELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKGY 195 (195)
T ss_pred HHH-HhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccCc
Confidence 222 35676666 499999999999988875 468999999999998874
No 71
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.87 E-value=1.9e-21 Score=179.88 Aligned_cols=159 Identities=20% Similarity=0.289 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEe
Q psy4881 143 MSDSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALY 220 (423)
Q Consensus 143 ~~p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~ 220 (423)
++|+++++++++.+++ .++++|.|. ..| ...+.+. +.+++++ +++++|+||+++|+|+|++++.++++||+++
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~---~~~~~~~-~~~~~~~-~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~ 75 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMW---AAQYYRF-KKPRSWL-TSGGLGTMGFGLPAAIGAKVARPDKTVICID 75 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHH---HHHhccc-CCCCeEE-eCCCccchhchHHHHHHHHHhCCCCeEEEEE
Confidence 4689999999999976 467788654 334 2211121 1233444 5777889999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-cccccccc------c-----cCCchhhh--hcCCCCeEEeeCCCHH
Q psy4881 221 GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSER------A-----SASVDYYT--RGDYIPGIWVDGMDIL 286 (423)
Q Consensus 221 GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~------~-----~~~~~~~~--~a~G~~~~~VdG~d~~ 286 (423)
|||++++. + ++|.||+++++|+++||.||+. ++.+..+. . ...+||.+ +++|+++++|+ +.+
T Consensus 76 GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~ 151 (186)
T cd02015 76 GDGSFQMN-I-QELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPE 151 (186)
T ss_pred cccHHhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeC--CHH
Confidence 99999985 3 4499999999999998888884 66543221 1 12467876 67899999999 688
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 287 AVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 287 ~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++.+++++|+ +.++|+||||.+.+
T Consensus 152 el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 152 ELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 8888888776 46899999999965
No 72
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.86 E-value=2.4e-21 Score=178.16 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHhhccC-CeEEeCCC-Cccccc-cccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEE
Q psy4881 143 MSDSQVDKAIDKYVKE-NEYSQDSD-ENMTNQ-LVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFAL 219 (423)
Q Consensus 143 ~~p~~vi~~l~~~~~~-~~~~~d~g-~~~~~~-~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~ 219 (423)
++|++++++|++.+++ .++++|.| +++|.. +. .. ..+++++ ++++.|+||+++|+|+|++++.++++||++
T Consensus 2 ~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~----~~-~~~~~~~-~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i 75 (178)
T cd02014 2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHL----RM-NGKQRFI-LSGLLATMGNGLPGAIAAKLAYPDRQVIAL 75 (178)
T ss_pred CCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhc----cc-CCCCcEE-cCCCCchhhhHHHHHHHHHHhCCCCcEEEE
Confidence 6799999999999975 57888855 444422 22 11 1233344 677789999999999999999999999999
Q ss_pred eCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHH
Q psy4881 220 YGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILA 287 (423)
Q Consensus 220 ~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~ 287 (423)
+|||+++++ +.| |.+|+++++|+++||+||+ |++.+..+.. ...++|.+ +++|+++++++ ++++
T Consensus 76 ~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~e 151 (178)
T cd02014 76 SGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDE 151 (178)
T ss_pred EcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999999997 456 9999999999999999887 6876533210 12467777 67899999998 7889
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 288 VREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 288 v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+.+++++++ +.++|+|||+.+.+
T Consensus 152 l~~~l~~a~----~~~~p~liev~~~~ 174 (178)
T cd02014 152 LEAALDEAL----AADGPVVIDVVTDP 174 (178)
T ss_pred HHHHHHHHH----hCCCCEEEEEEeCC
Confidence 888888776 46899999999864
No 73
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.86 E-value=2e-21 Score=178.65 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCC
Q psy4881 145 DSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGD 222 (423)
Q Consensus 145 p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GD 222 (423)
|+++++++++.+++ .++++|.|. .+| ........ .+++++ .++++|+||+++|+|+|++++.++++||+++||
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~---~~~~~~~~-~~~~~~-~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GD 75 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIW---MARYYRTY-APNTCL-ISNGLATMGVALPGAIGAKLVYPDRKVVAVSGD 75 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHH---HHHhCCcC-CCCCEE-eCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcc
Confidence 57889999999875 578888554 444 22222221 233344 577889999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc-----cc----CCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 223 GAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER-----AS----ASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 223 Ga~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-----~~----~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
|++++.. .+|.+|+++++|+++||.||+ |++.+..+. .. ..+||.+ +++|+++.+|+ +++++.+
T Consensus 76 G~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~ 151 (177)
T cd02010 76 GGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLP 151 (177)
T ss_pred hHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHH
Confidence 9998853 459999999999888888776 677653321 11 2467776 78899999998 8999999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++++|++ .++|+||||.+.+
T Consensus 152 al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 152 VLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHHh----CCCCEEEEEEecc
Confidence 9998874 6899999999864
No 74
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.86 E-value=1.3e-21 Score=209.37 Aligned_cols=259 Identities=17% Similarity=0.109 Sum_probs=169.2
Q ss_pred CCccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCC-cccCCccccccc-c
Q psy4881 28 TTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYHNK-F 103 (423)
Q Consensus 28 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~~~-~ 103 (423)
||++-.|.+++++|.+.+.. .|..+++.|.++ +.+|+. .-..+....| +.++.+|+++|+ +
T Consensus 239 tt~~gkg~~p~~hp~~~g~~-------~~~~~~~aDlvl~lG~~~~~--------~~~~~~~~~~~~~~~vI~id~d~~~ 303 (554)
T TIGR03254 239 PMSMAKGLLPDTHPQSAAAA-------RSFALAEADVVMLVGARLNW--------LLSHGKGKLWGEDAKFIQVDIEPTE 303 (554)
T ss_pred EcCCcceeCCCCCchhhhHH-------HHHHHhcCCEEEEECCCCch--------hhccCchhhcCCCCcEEEcCCCHHH
Confidence 34555666666666655422 244455555554 344551 1001111223 457788999998 5
Q ss_pred ccCcc---cceeecCCCccchhhcccC-----CCccccc-------ccc--------CCCCCCCHHHHHHHHHhhccC--
Q psy4881 104 HKDNV---GPLIIDGNTFPDYVLDKYT-----LPTPNRS-------ITY--------PTPSTMSDSQVDKAIDKYVKE-- 158 (423)
Q Consensus 104 ~g~nv---gpl~~d~~~vl~~~l~~~~-----~~~~~r~-------~~~--------~~~~~~~p~~vi~~l~~~~~~-- 158 (423)
++.+. .+|++|.+.++..++.... ....|+. .+. ....+++|.++++.|++.+++
T Consensus 304 ~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ 383 (554)
T TIGR03254 304 MDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNP 383 (554)
T ss_pred hCCCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCC
Confidence 66655 5888899988877655331 1223421 110 123468999999999999853
Q ss_pred Ce-EEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHh
Q psy4881 159 NE-YSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIA 237 (423)
Q Consensus 159 ~~-~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A 237 (423)
+. ++.|++..++ +...+.+.. .++.++ .++++|+||+++|+|+|++++ ++++||+++|||||+|. ..| |.||
T Consensus 384 ~~ivv~d~~~~~~--~~~~~~~~~-~p~~~~-~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~-~~E-L~Ta 456 (554)
T TIGR03254 384 DIYLVNEGANTLD--LARNVIDMY-KPRHRL-DVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFS-GME-VETI 456 (554)
T ss_pred CEEEEeCCchHHH--HHHHhcccC-CCCcEe-eCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhccc-HHH-HHHH
Confidence 54 4455544332 111111111 233344 577779999999999999998 48999999999999995 345 9999
Q ss_pred HhcCCCEEEEEecCC-cccccc--c-c-c----c-cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCc
Q psy4881 238 KLWNIPCIFVCENNG-YGMGTS--S-E-R----A-SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGP 305 (423)
Q Consensus 238 ~~~~LPvi~Vv~NN~-~gi~~~--~-~-~----~-~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP 305 (423)
+++++|+++||+||+ |....+ . . . . ...++|.+ ++||+++++|+ +++++.+++++|++ .+||
T Consensus 457 ~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p 530 (554)
T TIGR03254 457 CRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKP 530 (554)
T ss_pred HHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCC
Confidence 999999999999998 311100 0 0 0 0 13467877 78899999998 89999999998874 5799
Q ss_pred EEEEEEEec
Q psy4881 306 ILLETATYR 314 (423)
Q Consensus 306 ~lIev~t~R 314 (423)
+||||.+.+
T Consensus 531 ~lIev~id~ 539 (554)
T TIGR03254 531 TLINAVIDP 539 (554)
T ss_pred EEEEEEECC
Confidence 999999965
No 75
>PRK08266 hypothetical protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=208.64 Aligned_cols=214 Identities=17% Similarity=0.167 Sum_probs=152.4
Q ss_pred ccCCccccccc-cccC--cccceeecCCCccchhhcccCC----Ccccccc-------ccCCCCCCCHHH-HHHHHHhhc
Q psy4881 92 FCDNSHKYHNK-FHKD--NVGPLIIDGNTFPDYVLDKYTL----PTPNRSI-------TYPTPSTMSDSQ-VDKAIDKYV 156 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~--nvgpl~~d~~~vl~~~l~~~~~----~~~~r~~-------~~~~~~~~~p~~-vi~~l~~~~ 156 (423)
.+..+|+++|+ .+++ .-.+|.+|.+.+++.++..... ...|+.. +......++|+. +++.|++.+
T Consensus 287 ~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 366 (542)
T PRK08266 287 GLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKAAARQRIQAVQPQASYLRAIREAL 366 (542)
T ss_pred CCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHhc
Confidence 35678988888 4565 1147888999888776554321 1234321 111112367875 789999999
Q ss_pred cC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH
Q psy4881 157 KE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY 234 (423)
Q Consensus 157 ~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL 234 (423)
++ .+++.|.+. ..|..+. .+.. .+++++ +++.+|+||+++|+|+|++++.++++|||++|||+|+++ .++|
T Consensus 367 p~d~ivv~d~g~~~~~~~~~---~~~~-~~~~~~-~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~--~~eL 439 (542)
T PRK08266 367 PDDGIFVDELSQVGFASWFA---FPVY-APRTFV-TCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFG--VQEL 439 (542)
T ss_pred CCCcEEEeCCcHHHHHHHHh---cccC-CCCcEE-eCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhcc--HHHH
Confidence 76 467777543 3342221 1211 233344 677789999999999999999999999999999999996 3669
Q ss_pred HHhHhcCCCEEEEEecCC-ccccccccc------c----cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhC
Q psy4881 235 NIAKLWNIPCIFVCENNG-YGMGTSSER------A----SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRS 301 (423)
Q Consensus 235 n~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~ 301 (423)
.+|++++||+++||.||+ |++.+..++ . ...++|.+ +++|+++++|+ +.+++.+++++++ +
T Consensus 440 ~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~ 513 (542)
T PRK08266 440 ATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAAL----A 513 (542)
T ss_pred HHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----h
Confidence 999999999999888886 787654331 1 12367877 67899999998 7889999888887 4
Q ss_pred CCCcEEEEEEEecCCCC
Q psy4881 302 DKGPILLETATYRYSGH 318 (423)
Q Consensus 302 ~~gP~lIev~t~R~~gH 318 (423)
.++|+||||.|+|...+
T Consensus 514 ~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 514 HGGPVLIEVPVPRGSEA 530 (542)
T ss_pred CCCcEEEEEEecCCCCc
Confidence 67999999999886543
No 76
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.86 E-value=1e-21 Score=212.23 Aligned_cols=214 Identities=17% Similarity=0.182 Sum_probs=154.4
Q ss_pred hhhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHhh
Q psy4881 79 EAICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDKY 155 (423)
Q Consensus 79 ~~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~~ 155 (423)
..+|.+.|...+ .+..++|+ |.+++.+.+ ..+|+++++++.+|..| .+|+.|. +..+
T Consensus 52 ~~la~~iR~~ii~~~~~~~GH~------g~~Ls~vel------~~aL~~~~~~p~Dr~i~s~GH~ay~--------~~~l 111 (677)
T PLN02582 52 KQLADELRSDVIFNVSKTGGHL------GSSLGVVEL------TVALHYVFNAPQDKILWDVGHQSYP--------HKIL 111 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc------CccccHHHH------HHHHHHhhCCCCCeEEEECcchHHH--------HHHH
Confidence 377888887776 55668998 899988866 66777788888888777 4777754 3334
Q ss_pred c-cCCeEEeCC--CCccccccccccccccccCCeeeecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 156 V-KENEYSQDS--DENMTNQLVTVTNQLVTVTNQLVTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 156 ~-~~~~~~~d~--g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+ +.+.+.+-. ++ .++|+.+.++.++ ..++|.+| ++++|+|+|+|.++++.++.|+|++|||++++|.+|
T Consensus 112 ~gr~~~l~~~r~~g~--l~g~p~~~e~~~~-----~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~ 184 (677)
T PLN02582 112 TGRRDKMHTMRQTNG--LSGFTKRAESEYD-----CFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAY 184 (677)
T ss_pred HccHHHhcccccCCC--cCCCCCCCCCCCc-----eeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHH
Confidence 4 222232221 22 2335554443332 23445454 699999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEEecCCc-cc--------cccccccc-------CCc---------------------hhhh----
Q psy4881 232 EVYNIAKLWNIPCIFVCENNGY-GM--------GTSSERAS-------ASV---------------------DYYT---- 270 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~~-gi--------~~~~~~~~-------~~~---------------------~~~~---- 270 (423)
|+||+|+.+++|+++||+||++ ++ +.++...+ .++ .+.+
T Consensus 185 Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (677)
T PLN02582 185 EAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDE 264 (677)
T ss_pred HHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHH
Confidence 9999999999999999999997 44 33332110 000 0100
Q ss_pred --------------hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCC
Q psy4881 271 --------------RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 321 (423)
Q Consensus 271 --------------~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~ 321 (423)
+++|+.++ +|||||+++|.++++++.+. ..++|++|+++|.+++|+..+
T Consensus 265 ~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 265 YARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 34688866 99999999999999988742 116999999999999998754
No 77
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.86 E-value=3.7e-21 Score=180.87 Aligned_cols=156 Identities=14% Similarity=0.056 Sum_probs=118.8
Q ss_pred HHHHHHHhhccC-CeEEeCC-CCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKE-NEYSQDS-DENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~-g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
+++++|++.+++ +++++|. .+++|.. .+.+.. .+++++ +++++|+||+++|+|+|++++.|+++|||++|||+
T Consensus 3 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~---~~~~~~-~~~~~~-~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGs 77 (205)
T cd02003 3 EVLGALNEAIGDDDVVINAAGSLPGDLH---KLWRAR-TPGGYH-LEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGS 77 (205)
T ss_pred hHHHHHHHhCCCCCEEEECCCcchHHHH---HhCCcC-CCCcEE-cCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccch
Confidence 577889998864 6788884 4555522 111221 233344 56778999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc-----------------------cCCchhhh--hcCCCCeE
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-----------------------SASVDYYT--RGDYIPGI 278 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------------------~~~~~~~~--~a~G~~~~ 278 (423)
++++. .+|.||+++++|+++||.||+ |++.+..+.. ...+||.+ +++|++++
T Consensus 78 f~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~ 155 (205)
T cd02003 78 YLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVE 155 (205)
T ss_pred hhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEE
Confidence 99853 459999999999888877776 6876543210 01367776 67899999
Q ss_pred EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 279 WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 279 ~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
+|+ +++++.+++++|+ +.++|+||||.+.+.
T Consensus 156 ~v~--~~~el~~al~~a~----~~~gp~lIeV~v~~~ 186 (205)
T cd02003 156 KVK--TIEELKAALAKAK----ASDRTTVIVIKTDPK 186 (205)
T ss_pred EEC--CHHHHHHHHHHHH----hCCCCEEEEEEeecc
Confidence 997 8999999999887 468999999999763
No 78
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.86 E-value=5.1e-21 Score=175.36 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHhhccCC-eEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEe
Q psy4881 143 MSDSQVDKAIDKYVKEN-EYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALY 220 (423)
Q Consensus 143 ~~p~~vi~~l~~~~~~~-~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~ 220 (423)
++|+++++++++.++++ ++++|.| +..|.... .+. +.+++++ ++++ |+|+.++++|+|++++.++++|+|++
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~---~~~-~~~~~~~-~~~~-g~mG~~lp~aiGaala~~~~~vv~i~ 74 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQ---LPL-TRPGSYF-TLRG-GGLGWGLPAAVGAALANPDRKVVAII 74 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHh---ccc-CCCCCee-ccCC-ccccchHHHHHHHHhcCCCCeEEEEE
Confidence 47899999999999865 7888854 44452211 121 1233445 4555 88999999999999889999999999
Q ss_pred CCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc-----------------cCCchhhh--hcCCCCeEEe
Q psy4881 221 GDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-----------------SASVDYYT--RGDYIPGIWV 280 (423)
Q Consensus 221 GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-----------------~~~~~~~~--~a~G~~~~~V 280 (423)
|||+++++. ++|.+|+++++|+++||.||+ |++.+..+.. ...++|.+ +++|+++++|
T Consensus 75 GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 152 (178)
T cd02002 75 GDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV 152 (178)
T ss_pred cCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe
Confidence 999999874 569999999999999999997 7887643321 12367776 6789999999
Q ss_pred eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 281 DGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 281 dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
+ +++++.+++++|++ .++|+|||+.+
T Consensus 153 ~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 153 E--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred C--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 9 58899998888874 68999999964
No 79
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.86 E-value=4.1e-21 Score=204.69 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=171.6
Q ss_pred CCccccccCCCCCCCCcc-cccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCCcccCCccccccc-c
Q psy4881 28 TTEKVFGPLDYENIPSEE-FWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNK-F 103 (423)
Q Consensus 28 ~~~~~~g~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~-~ 103 (423)
||++-.|.++++||++.+ +.|..+....|..+++.|.++ +.+++.- . . .+.....+.+..+|+++++ +
T Consensus 234 tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~-~-----~--~~~~~~~~~~~~I~id~~~~~ 305 (535)
T TIGR03394 234 TTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDT-N-----F--AVSQRKIDLRRTIHAFDRAVT 305 (535)
T ss_pred EccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCccccc-c-----c--ccccccCCCCcEEEEeCCEEE
Confidence 456667777777777766 456666666777777776666 4456520 0 0 0111122446778998888 5
Q ss_pred ccCccc---ceeecCCCccchhhcccC--CCcccccc---c----cCCCCCCCHHHHHHHHHhhccCC---eEEeCCCCc
Q psy4881 104 HKDNVG---PLIIDGNTFPDYVLDKYT--LPTPNRSI---T----YPTPSTMSDSQVDKAIDKYVKEN---EYSQDSDEN 168 (423)
Q Consensus 104 ~g~nvg---pl~~d~~~vl~~~l~~~~--~~~~~r~~---~----~~~~~~~~p~~vi~~l~~~~~~~---~~~~d~g~~ 168 (423)
++.+.. .+ .|....+..++.... ....|... + ......++|+++++.+++.++++ +++.|.|..
T Consensus 306 ~~~~~~~~~~i-~d~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~ 384 (535)
T TIGR03394 306 LGYHVYADIPL-AGLVDALLALLCGLPPSDRTTRGKGPHAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDC 384 (535)
T ss_pred ECCeeECCccH-HHHHHHHHHhhhcccccccccccccccccccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHH
Confidence 676552 22 344444444433211 01111111 1 01234689999999999998642 477885543
Q ss_pred cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEE
Q psy4881 169 MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVC 248 (423)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv 248 (423)
.+ +.. .+. .+.++ +++.+|+||+++|+|+|++++.+++ +|+++|||||+|. ..| |.||+++++|+++||
T Consensus 385 ~~--~~~---~~~--~~~~~-~~~~~g~mG~glpaaiGa~lA~~~r-~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV 453 (535)
T TIGR03394 385 LF--TAM---DMD--DAGLM-APGYYAGMGFGVPAGIGAQCTSGKR-ILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVIL 453 (535)
T ss_pred HH--HHH---hcC--CCcEE-CcCccchhhhHHHHHHHHHhCCCCC-eEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEE
Confidence 32 111 111 22344 5677899999999999999997655 4779999999995 344 999999999999888
Q ss_pred ecCC-cccccccccc-----cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 249 ENNG-YGMGTSSERA-----SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 249 ~NN~-~gi~~~~~~~-----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+||+ |++.+..+.. ...+||.+ ++||+++++|+ +.+++.+++++|++ ..++|+||||.+.+
T Consensus 454 ~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~~ 522 (535)
T TIGR03394 454 FNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAMLPR 522 (535)
T ss_pred EECCccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEECCc
Confidence 8887 6887654421 12468876 78999999998 89999999999884 23558999999843
No 80
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.85 E-value=1.1e-20 Score=174.58 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHhhccC-CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEe
Q psy4881 142 TMSDSQVDKAIDKYVKE-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALY 220 (423)
Q Consensus 142 ~~~p~~vi~~l~~~~~~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~ 220 (423)
+++|.++++.+++.+++ .++++|.|...|..+ +.+.. .+++++ .++.+|+||+++|+|+|++++.++++|++++
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~---~~~~~-~~~~~~-~~~~~g~mG~~l~~aiGaala~~~~~vv~i~ 75 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGAL---DLKLP-KGTRFI-SQPLWGSIGYSVPAALGAALAAPDRRVILLV 75 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHHHhhh---hccCC-CCCEEE-eccchhhHhhhHHHHHHHHHhCCCCeEEEEE
Confidence 46899999999999864 688888665445222 22221 233344 6778899999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc------cCCchhhh--hcCC----CCeEEeeCCCHHH
Q psy4881 221 GDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA------SASVDYYT--RGDY----IPGIWVDGMDILA 287 (423)
Q Consensus 221 GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~------~~~~~~~~--~a~G----~~~~~VdG~d~~~ 287 (423)
|||+++++ ++| |.||+++++|+++||.||+ |++.+..+.. ...++|.+ +++| +++.+|+ ++++
T Consensus 76 GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~e 151 (183)
T cd02005 76 GDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGE 151 (183)
T ss_pred CCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHH
Confidence 99999884 466 9999999999777777665 6876543321 12367776 6778 7889997 8999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 288 VREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 288 v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+.++++++++ ..++|+|||+.+.+
T Consensus 152 l~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 152 LDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 9999988884 25799999999865
No 81
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.85 E-value=4.4e-20 Score=200.47 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=112.8
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGY 253 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~ 253 (423)
++..++|.+|+ ++.|+|+|+|.|+.+ .+.+|+|++|||++++|.+||++++|+.++|| +++||+||++
T Consensus 104 gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~ 183 (653)
T TIGR00232 104 GVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRI 183 (653)
T ss_pred CeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCe
Confidence 45567888885 999999999999863 47889999999999999999999999999999 8889999999
Q ss_pred ccccccccccCCchhhh--hcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEecCCCCC
Q psy4881 254 GMGTSSERASASVDYYT--RGDYIPGIWV-DGMDILAVREAARFAVNHCRSD-KGPILLETATYRYSGHS 319 (423)
Q Consensus 254 gi~~~~~~~~~~~~~~~--~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~R~~gH~ 319 (423)
+++.+..... ..++.+ ++||+++++| ||||++++.+|+++|. +. ++|++|++.|+|++|.+
T Consensus 184 ~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~----~~~~~P~~I~~~T~~g~G~~ 248 (653)
T TIGR00232 184 SIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAK----ASKDKPTLIEVTTTIGFGSP 248 (653)
T ss_pred eecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH----hCCCCCEEEEEEeeecccCc
Confidence 9999887665 455665 5789999999 9999999988887775 34 48999999999999986
No 82
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.85 E-value=5.5e-21 Score=203.40 Aligned_cols=207 Identities=16% Similarity=0.145 Sum_probs=143.4
Q ss_pred ccCCccccccc-cccCcc--cceeecCCCccchhhcccCCC--c--cccccc--c-CCCCCCCHHHHHHHHHhhccC-Ce
Q psy4881 92 FCDNSHKYHNK-FHKDNV--GPLIIDGNTFPDYVLDKYTLP--T--PNRSIT--Y-PTPSTMSDSQVDKAIDKYVKE-NE 160 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv--gpl~~d~~~vl~~~l~~~~~~--~--~~r~~~--~-~~~~~~~p~~vi~~l~~~~~~-~~ 160 (423)
.+...|++.|+ +++... ..+.+|++.+++.++...... . .++... . ....+++|.++++.|++.+++ .+
T Consensus 298 ~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~i 377 (530)
T PRK07092 298 GAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLPPSARPAPPARPMPPPAPAPGEPLSVAFVLQTLAALRPADAI 377 (530)
T ss_pred CCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhccccccchhhhhccccccCCCCCcCHHHHHHHHHHhCCCCeE
Confidence 35567888888 344332 467778888777765543211 1 111111 1 123468999999999999975 56
Q ss_pred EEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHh
Q psy4881 161 YSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKL 239 (423)
Q Consensus 161 ~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~ 239 (423)
++.|.|.. .| ...+.+.. .+++++ .+. .|+||+++|+|+|++++.++++|||++|||+++++. ++|++|++
T Consensus 378 vv~d~g~~~~~---~~~~~~~~-~~~~~~-~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~--~eL~ta~~ 449 (530)
T PRK07092 378 VVEEAPSTRPA---MQEHLPMR-RQGSFY-TMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSI--QALWSAAQ 449 (530)
T ss_pred EEeCCCccHHH---HHHhcCcC-CCCceE-ccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhH--HHHHHHHH
Confidence 77886543 33 22222222 233344 332 367888888888888888999999999999999973 66999999
Q ss_pred cCCCEEEEEecCC-cccccccccc----------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 240 WNIPCIFVCENNG-YGMGTSSERA----------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 240 ~~LPvi~Vv~NN~-~gi~~~~~~~----------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
+++|+++||.||+ |++.+..++. ....+|.+ ++||+++++|+ +.+++.+++++|+ +.++|+
T Consensus 450 ~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~----~~~~p~ 523 (530)
T PRK07092 450 LKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARAL----AADGPV 523 (530)
T ss_pred hCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCE
Confidence 9999999999888 7875433211 12467776 67899999998 6888888887776 478999
Q ss_pred EEEEEE
Q psy4881 307 LLETAT 312 (423)
Q Consensus 307 lIev~t 312 (423)
|||+.+
T Consensus 524 liev~~ 529 (530)
T PRK07092 524 LVEVEV 529 (530)
T ss_pred EEEEEc
Confidence 999986
No 83
>PRK05899 transketolase; Reviewed
Probab=99.85 E-value=1.3e-20 Score=204.14 Aligned_cols=146 Identities=24% Similarity=0.263 Sum_probs=121.8
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcCC----------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSGT----------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~~----------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|++|+ +|+|+|+|+|.++.+. +++|+|++|||++++|.+||+|++|+.++|| +++|++||+|+
T Consensus 113 ~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~ 192 (624)
T PRK05899 113 VETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRIS 192 (624)
T ss_pred eeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence 3445777774 9999999999998876 8999999999999999999999999999998 88889999999
Q ss_pred cccccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCC---
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRT--- 329 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~--- 329 (423)
++.+.... ..+++.+ +++|+++++|||||++++.+++++|.+ .++|++|++.|+|++||+..++...|+.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~ 267 (624)
T PRK05899 193 IDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHGAPL 267 (624)
T ss_pred cccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence 98776633 3467776 578999999999999999999998874 4799999999999999986554434653
Q ss_pred -hhHHHHHH
Q psy4881 330 -RDEIQEVR 337 (423)
Q Consensus 330 -~~e~~~~~ 337 (423)
+++++.+.
T Consensus 268 ~~~~~~~~~ 276 (624)
T PRK05899 268 GAEEIAAAK 276 (624)
T ss_pred CHHHHHHHH
Confidence 45666554
No 84
>PTZ00089 transketolase; Provisional
Probab=99.85 E-value=1.7e-20 Score=203.87 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=124.3
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcCC----------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSGT----------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~~----------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ ++.|+|+|+|.|+.+. +.+|+|++|||++++|.+||||++|+.++|| +|+||+||+++
T Consensus 111 v~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~ 190 (661)
T PTZ00089 111 VEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKIT 190 (661)
T ss_pred cccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 4456777775 9999999999999754 7889999999999999999999999999998 89999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeEEe-eCC-CHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCC---Cc
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGIWV-DGM-DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT---SY 327 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~~V-dG~-d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~---~Y 327 (423)
++.+..... ..++.+ +++|++++.| ||| |++++.+|+++|.+. .++|++|+++|+|++||...+... .+
T Consensus 191 i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~ 266 (661)
T PTZ00089 191 IDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAP 266 (661)
T ss_pred cccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCC
Confidence 998886543 344554 5789999999 999 999999999988742 368999999999999987766532 36
Q ss_pred CChhHHHHHHh
Q psy4881 328 RTRDEIQEVRQ 338 (423)
Q Consensus 328 R~~~e~~~~~~ 338 (423)
++++|++.+++
T Consensus 267 ~~~~~~~~~~~ 277 (661)
T PTZ00089 267 LGDEDIAQVKE 277 (661)
T ss_pred CCHHHHHHHHH
Confidence 67888887764
No 85
>PRK12754 transketolase; Reviewed
Probab=99.84 E-value=7.9e-20 Score=197.84 Aligned_cols=130 Identities=25% Similarity=0.240 Sum_probs=114.9
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGY 253 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~ 253 (423)
++..++|.+|+ ++.|+|+|+|.|+.+ .+.+|+|++|||++++|.+|||+++|+.++|| +|+||+||++
T Consensus 108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~ 187 (663)
T PRK12754 108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187 (663)
T ss_pred CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 45567888886 999999999999876 37889999999999999999999999999999 8899999999
Q ss_pred ccccccccccCCchhhh--hcCCCCeEE-eeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 254 GMGTSSERASASVDYYT--RGDYIPGIW-VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 254 gi~~~~~~~~~~~~~~~--~a~G~~~~~-VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
+++.+..... ..++.+ ++||+++++ |||||++++.+|+++|.. ..++|++|+++|+|++|.+
T Consensus 188 ~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~ 252 (663)
T PRK12754 188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSP 252 (663)
T ss_pred ccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcc
Confidence 9998887655 456666 578999999 899999999999988764 2589999999999999986
No 86
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.84 E-value=9e-21 Score=203.44 Aligned_cols=211 Identities=17% Similarity=0.101 Sum_probs=147.1
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC-----Ccccccc-------c---c-----CCCCCCCHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-----PTPNRSI-------T---Y-----PTPSTMSDS 146 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-----~~~~r~~-------~---~-----~~~~~~~p~ 146 (423)
+.++.+|+++|+ +++.+. .++++|.+.+++.++..... ...|... + . ....+++|.
T Consensus 297 ~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (569)
T PRK09259 297 ADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFY 376 (569)
T ss_pred CCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHH
Confidence 446778999998 466654 58888999888776553321 1234211 1 1 022468999
Q ss_pred HHHHHHHhhcc--CCe-EEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 147 QVDKAIDKYVK--ENE-YSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 147 ~vi~~l~~~~~--~~~-~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
.+++.|+++++ ++. ++.|++...+ +...+.+.. .++.++ +++++|+||+|+|+|+|++++ ++++||+++|||
T Consensus 377 ~~~~~l~~~l~~~~d~iv~~~~~~~~~--~~~~~~~~~-~p~~~~-~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG 451 (569)
T PRK09259 377 NALGAIRDVLKENPDIYLVNEGANTLD--LARNIIDMY-KPRHRL-DCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDS 451 (569)
T ss_pred HHHHHHHHHhCCCCCEEEEeCchHHHH--HHHHhcccC-CCCceE-eCCCCccccccHHHHHHHHhc-CCCcEEEEecCc
Confidence 99999999984 354 4555544322 111111111 233344 567789999999999999998 589999999999
Q ss_pred ccchhhHHHHHHHhHhcCCCEEEEEecCCc---cccccc---ccc-----cCCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 224 AANQGQVFEVYNIAKLWNIPCIFVCENNGY---GMGTSS---ERA-----SASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 224 a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~---gi~~~~---~~~-----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
+|+|. ..| |.||+++++|+++||+||+- ++.... ... ...+||.+ +++|+++++|+ +++++.+
T Consensus 452 ~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~ 527 (569)
T PRK09259 452 AFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRH 527 (569)
T ss_pred ccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHH
Confidence 99995 345 99999999999999999982 111000 010 12568887 78899999998 8999999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++++|++ .++|+||||.+.+
T Consensus 528 al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 528 ALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred HHHHHHh----CCCCEEEEEEECC
Confidence 9999874 5899999999964
No 87
>PRK12753 transketolase; Reviewed
Probab=99.83 E-value=5e-20 Score=200.10 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=113.9
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcCC----------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSGT----------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGY 253 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~~----------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~ 253 (423)
++..++|.+|+ ++.|+|+|+|.|+.+. +.+|+|++|||++++|.+|||+++|+.++|| +|+||+||++
T Consensus 108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~ 187 (663)
T PRK12753 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187 (663)
T ss_pred CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 34556777775 9999999999998752 6899999999999999999999999999998 8999999999
Q ss_pred ccccccccccCCchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 254 GMGTSSERASASVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 254 gi~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
+++.+..... ..++.+ ++||++++ .|||||++++++|+++|.+ ..++|++|+++|++++|++.
T Consensus 188 ~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~ 253 (663)
T PRK12753 188 SIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPN 253 (663)
T ss_pred cCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCc
Confidence 9999887654 345555 57899999 5999999999999998875 35789999999999999974
No 88
>PLN02790 transketolase
Probab=99.83 E-value=2.8e-20 Score=202.01 Aligned_cols=130 Identities=24% Similarity=0.305 Sum_probs=111.0
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKY-----SGT-----KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~-----~~~-----~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ +++|+|+|+|.|+ +++ +.+|+|++|||++++|.+|||+|+|+.++|| +|+||+||+|+
T Consensus 100 i~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~ 179 (654)
T PLN02790 100 IEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHIS 179 (654)
T ss_pred ccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCcc
Confidence 4456676765 9999999999995 343 6889999999999999999999999999998 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeEEeeC--CCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGIWVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~~VdG--~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
++.+..... ..++.+ ++||++++.||| ||++++.+|+++|.+ ..++|++|+++|+|++|.+.
T Consensus 180 i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~---~~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 180 IDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKA---VTDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred ccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCeEEEEEEEeecCCCcc
Confidence 999887543 334454 678999999988 899999999988764 26899999999999999873
No 89
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.83 E-value=1.2e-20 Score=202.79 Aligned_cols=130 Identities=26% Similarity=0.255 Sum_probs=110.1
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhc-CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccccccccccc-
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYS-GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERAS- 263 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~-~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~- 263 (423)
...++|.+|+ +|+|+|+|+|.|++ +++++|+|++|||++++|.+||+|++|+.+++|+++|++||+|+++.+.....
T Consensus 112 ~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~ 191 (580)
T PRK05444 112 DTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSN 191 (580)
T ss_pred eeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhh
Confidence 4456777875 99999999999998 68899999999999999999999999999999999999999999877664321
Q ss_pred --CCchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 264 --ASVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 264 --~~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
...++.+ +++|++++ .|||+|++++.+++++|+ +.++|++|++.|.|++|.+.
T Consensus 192 ~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~ 249 (580)
T PRK05444 192 YLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAP 249 (580)
T ss_pred hhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCCh
Confidence 1122222 68899999 599999999999888776 45799999999999999764
No 90
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.82 E-value=8.2e-20 Score=167.62 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=114.4
Q ss_pred HHHHHHHHhhccC-CeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 146 SQVDKAIDKYVKE-NEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 146 ~~vi~~l~~~~~~-~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
.+++++|++.+++ .+++.|.|.. .| ...+.+....+++++ ++.++++|++++|+|+|++++. +++|||++|||
T Consensus 4 ~~~~~~l~~~l~~~~ivv~d~g~~~~~---~~~~~~~~~~~~~~~-~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDG 78 (175)
T cd02009 4 PALARALPDHLPEGSQLFVGNSMPIRD---LDLFALPSDKTVRVF-ANRGASGIDGTLSTALGIALAT-DKPTVLLTGDL 78 (175)
T ss_pred HHHHHHHHHhCCCCCeEEEECCHHHHH---HHHccCccCCCceEE-ecCCccchhhHHHHHHHHHhcC-CCCEEEEEehH
Confidence 4588899999975 5777886543 34 222222201233344 4556788899999999998887 89999999999
Q ss_pred ccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc---------cc---CCchhhh--hcCCCCeEEeeCCCHHHH
Q psy4881 224 AANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER---------AS---ASVDYYT--RGDYIPGIWVDGMDILAV 288 (423)
Q Consensus 224 a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~---------~~---~~~~~~~--~a~G~~~~~VdG~d~~~v 288 (423)
++++. . .+|.||+++++|+++||.||+ |++....+. .. ..+||.+ +++|+++++|+ +++++
T Consensus 79 sf~m~-~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el 154 (175)
T cd02009 79 SFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDEL 154 (175)
T ss_pred HHHHh-H-HHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHH
Confidence 99985 3 459999999999988888887 576543321 01 1467877 78899999998 89999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 289 REAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 289 ~~al~~A~~~ar~~~gP~lIev~t 312 (423)
.+++++|++ .++|+||||.+
T Consensus 155 ~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 155 EQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred HHHHHHHHh----CCCCEEEEEeC
Confidence 999988874 68999999976
No 91
>PRK06163 hypothetical protein; Provisional
Probab=99.82 E-value=3.3e-19 Score=167.37 Aligned_cols=169 Identities=19% Similarity=0.214 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHhhcc-CCeEEeCCCC---ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEE
Q psy4881 142 TMSDSQVDKAIDKYVK-ENEYSQDSDE---NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCF 217 (423)
Q Consensus 142 ~~~p~~vi~~l~~~~~-~~~~~~d~g~---~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv 217 (423)
.++-++++++++..++ ++++++|.|. .+|.. +. .+++++ .+|+||+++|+|+|++++.|+++||
T Consensus 12 ~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~---~~-----~~~~~~----~~GsMG~glpaAiGaalA~p~r~Vv 79 (202)
T PRK06163 12 VMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAA---GQ-----RPQNFY----MLGSMGLAFPIALGVALAQPKRRVI 79 (202)
T ss_pred CcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHh---hc-----CCCCeE----eecccccHHHHHHHHHHhCCCCeEE
Confidence 4788899999999886 4688889663 24422 11 122233 2688999999999999999999999
Q ss_pred EEeCCCccchhhHHHHHHHhHhc-CCCEEEEEecCC-cccccccccc-cCCchhhh--hcCCCC-eEEeeCCCHHHHHHH
Q psy4881 218 ALYGDGAANQGQVFEVYNIAKLW-NIPCIFVCENNG-YGMGTSSERA-SASVDYYT--RGDYIP-GIWVDGMDILAVREA 291 (423)
Q Consensus 218 ~~~GDGa~~~G~~~EaLn~A~~~-~LPvi~Vv~NN~-~gi~~~~~~~-~~~~~~~~--~a~G~~-~~~VdG~d~~~v~~a 291 (423)
|++|||+++|.. .+|.||+++ ++|+++||+||+ |++....... ...+||.+ +++|++ +++|+ +.+++..+
T Consensus 80 ~i~GDG~f~m~~--~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~a 155 (202)
T PRK06163 80 ALEGDGSLLMQL--GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAA--DEAHFEAL 155 (202)
T ss_pred EEEcchHHHHHH--HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHH
Confidence 999999998853 459999887 689999999886 6764322111 13478887 678998 67898 89999999
Q ss_pred HHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHH
Q psy4881 292 ARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQE 335 (423)
Q Consensus 292 l~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~ 335 (423)
++++++ .++|+||||.+.+.. +.+..+|++.|++.
T Consensus 156 l~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~~ 190 (202)
T PRK06163 156 VDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIRE 190 (202)
T ss_pred HHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHHH
Confidence 999874 589999999997532 22344688887753
No 92
>PRK12474 hypothetical protein; Provisional
Probab=99.82 E-value=8.7e-20 Score=193.77 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=121.1
Q ss_pred CCCCHHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 141 STMSDSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 141 ~~~~p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
.+++|+++++++++.+++ .+++.|.|. ..|. ..+.+. ..+++++ .+++ |+||+++|+|+|++++.|+++|||
T Consensus 339 ~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~---~~~~~~-~~p~~~~-~~~~-gsmG~glpaAiGa~lA~p~r~vv~ 412 (518)
T PRK12474 339 GALNSLGVAQLIAHRTPDQAIYADEALTSGLFF---DMSYDR-ARPHTHL-PLTG-GSIGQGLPLAAGAAVAAPDRKVVC 412 (518)
T ss_pred CCcCHHHHHHHHHHHCCCCeEEEECCCcCHHHH---HHhhcc-cCCCCEE-ccCC-CccCccHHHHHHHHHHCCCCcEEE
Confidence 458999999999999975 467778554 4442 221221 1233344 4444 899999999999999999999999
Q ss_pred EeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc-------------c--C--Cchhhh--hcCCCCeE
Q psy4881 219 LYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-------------S--A--SVDYYT--RGDYIPGI 278 (423)
Q Consensus 219 ~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-------------~--~--~~~~~~--~a~G~~~~ 278 (423)
++|||||+|. . ++|.||++++||+++||+||+ |++.+..+.. . . .+||.+ ++||++++
T Consensus 413 i~GDG~f~m~-~-qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 490 (518)
T PRK12474 413 PQGDGGAAYT-M-QALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEAS 490 (518)
T ss_pred EEcCchhcch-H-HHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEE
Confidence 9999999995 3 449999999999999999888 6876532110 0 1 247887 78999999
Q ss_pred EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 279 WVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 279 ~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
+|+ +++++.+++++|+ +.++|+||||.+
T Consensus 491 rv~--~~~eL~~al~~a~----~~~~p~liev~~ 518 (518)
T PRK12474 491 RAT--TAEEFSAQYAAAM----AQRGPRLIEAMI 518 (518)
T ss_pred EeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 999 7999999999887 468999999974
No 93
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.81 E-value=6.5e-20 Score=196.64 Aligned_cols=256 Identities=14% Similarity=-0.009 Sum_probs=164.3
Q ss_pred ccccCCCCCccccccCCCC-CCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCCcccCCcccc
Q psy4881 21 TCYPVEDTTEKVFGPLDYE-NIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKY 99 (423)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~ 99 (423)
..+|.+| |+++|+++.. +....+....++|.++-++.+ ++- . ... .+.. . +.....|++
T Consensus 258 ~~~~~~h--p~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~---------l~~-----~-~~~-~~~~-~-~~~~~i~id 317 (568)
T PRK07449 258 RNYAPLH--PQPIPCYDLWLRNPKAAEELLQPDIVIQFGSP---------PTS-----K-RLL-QWLA-D-CEPEYWVVD 317 (568)
T ss_pred CCCCCCC--ccccchHHHHhcCchhhhhcCCCCEEEEeCCC---------CCc-----h-hHH-HHHh-c-CCCCEEEEC
Confidence 3477788 8888777654 333333333455555555543 431 0 010 1100 0 112457888
Q ss_pred ccc-cccCcc---cceeecCCCccchhhcccCCCcccccc-------cc------CCCCCCCHHHHHHHHHhhccC-CeE
Q psy4881 100 HNK-FHKDNV---GPLIIDGNTFPDYVLDKYTLPTPNRSI-------TY------PTPSTMSDSQVDKAIDKYVKE-NEY 161 (423)
Q Consensus 100 ~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~~~~~r~~-------~~------~~~~~~~p~~vi~~l~~~~~~-~~~ 161 (423)
.|+ +++++. .+|.+|.+.++.. +... ....|... |. .....++|.+++++|++.+++ .++
T Consensus 318 ~d~~~~~~~~~~~~~i~~d~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iv 395 (568)
T PRK07449 318 PGPGRLDPAHHATRRLTASVATWLEA-HPAE-KRKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPEGGQL 395 (568)
T ss_pred CCCCcCCCCCCceEEEEEcHHHHHHh-cccc-cchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCCCeE
Confidence 888 466654 4788888887665 2211 12233221 10 013468999999999999975 567
Q ss_pred EeCCCC-cccc-ccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHh
Q psy4881 162 SQDSDE-NMTN-QLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKL 239 (423)
Q Consensus 162 ~~d~g~-~~~~-~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~ 239 (423)
+.|.+. ..|. +++. .. .+..++ .+.++++|++++|+|+|++++ ++++|||++|||||++.. .+|.||++
T Consensus 396 ~~~~g~~~~~~~~~~~----~~-~~~~~~-~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~--~eL~Ta~r 466 (568)
T PRK07449 396 FVGNSLPVRDVDAFGQ----LP-DGYPVY-SNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDL--NGLLLLKQ 466 (568)
T ss_pred EEECcHHHHHHHHccC----cC-CCceEE-ecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCc--HHHHhhcc
Confidence 777543 2331 1221 11 112233 344556799999999999998 899999999999999853 44999999
Q ss_pred cCCCEEEEEecCC-ccccccc---cc------c---cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCC
Q psy4881 240 WNIPCIFVCENNG-YGMGTSS---ER------A---SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKG 304 (423)
Q Consensus 240 ~~LPvi~Vv~NN~-~gi~~~~---~~------~---~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~g 304 (423)
+++|+++||.||+ |++.... +. . ...++|.+ +++|+++++|+ +++++.+++++|+ +.++
T Consensus 467 ~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~ 540 (568)
T PRK07449 467 VPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPG 540 (568)
T ss_pred cCCCeEEEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCC
Confidence 9999999999888 5643211 11 1 12467877 67899999998 8999999999887 4689
Q ss_pred cEEEEEEEe
Q psy4881 305 PILLETATY 313 (423)
Q Consensus 305 P~lIev~t~ 313 (423)
|+||||.+.
T Consensus 541 p~lIev~id 549 (568)
T PRK07449 541 LTVIEVKTN 549 (568)
T ss_pred CEEEEEeCC
Confidence 999999884
No 94
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3e-19 Score=166.04 Aligned_cols=127 Identities=25% Similarity=0.296 Sum_probs=110.9
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccccccccc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGTSSERAS 263 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~~ 263 (423)
++..++|++|| +++|+|+|+|.|+++.+..|++++|||.+++|.+|||+.+|++|+|. +|.||.-|+..+........
T Consensus 113 gve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~ 192 (243)
T COG3959 113 GVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIM 192 (243)
T ss_pred ceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhcc
Confidence 46678999997 99999999999999999999999999999999999999999999999 88889988887776666665
Q ss_pred CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 264 ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 264 ~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
+..++.+ +|||+++++|||||++++.+|+.++.. ..++|.+|-+.|.++
T Consensus 193 ~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~rP~~IIa~Tvkg 243 (243)
T COG3959 193 PKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKGRPTVIIAKTVKG 243 (243)
T ss_pred CcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCCCCeEEEEecccC
Confidence 5555665 799999999999999999999888763 234999999998763
No 95
>PRK07586 hypothetical protein; Validated
Probab=99.80 E-value=3.2e-19 Score=189.14 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 141 STMSDSQVDKAIDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 141 ~~~~p~~vi~~l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
.+++|.++++.|++.+++ ++++.|.|. .+|... +... ..++.++ ++++ |+||+++|+|+|++++.|+++|||
T Consensus 335 ~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~---~~~~-~~~~~~~-~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~ 408 (514)
T PRK07586 335 GALTPEAIAQVIAALLPENAIVVDESITSGRGFFP---ATAG-AAPHDWL-TLTG-GAIGQGLPLATGAAVACPDRKVLA 408 (514)
T ss_pred CCcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHH---hccc-cCCCCEE-ccCC-cccccHHHHHHHHHHhCCCCeEEE
Confidence 458999999999999975 577788554 444221 1121 1233344 4444 789999999999999999999999
Q ss_pred EeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc----------------cc-CCchhhh--hcCCCCeE
Q psy4881 219 LYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER----------------AS-ASVDYYT--RGDYIPGI 278 (423)
Q Consensus 219 ~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~----------------~~-~~~~~~~--~a~G~~~~ 278 (423)
++|||||++. .++|.||++++||+++||.||+ |++.+..+. .. ..+||.+ ++||++++
T Consensus 409 i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 486 (514)
T PRK07586 409 LQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPAR 486 (514)
T ss_pred EEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEE
Confidence 9999999985 3559999999999888888777 787654221 00 1357877 78899999
Q ss_pred EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 279 WVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 279 ~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
+|+ +++++.+++++|+ +.++|+||||.+
T Consensus 487 ~V~--~~~el~~al~~a~----~~~~p~liev~~ 514 (514)
T PRK07586 487 RVT--TAEEFADALAAAL----AEPGPHLIEAVV 514 (514)
T ss_pred EeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 998 7999999998887 468999999963
No 96
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.80 E-value=9.4e-19 Score=158.05 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=111.3
Q ss_pred HHHHHHHHhhccCCeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 146 SQVDKAIDKYVKENEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 146 ~~vi~~l~~~~~~~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
+.++++|...++++++++|.| ..+|. +.. ...+++++. +|+||+++|+|+|++++.+ ++|||++|||+
T Consensus 2 ~~~~~~l~~~l~d~~vv~d~G~~~~~~-~~~-----~~~~~~~~~----~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~ 70 (157)
T cd02001 2 IAAIAEIIEASGDTPIVSTTGYASREL-YDV-----QDRDGHFYM----LGSMGLAGSIGLGLALGLS-RKVIVVDGDGS 70 (157)
T ss_pred HHHHHHHHHhCCCCEEEeCCCHhHHHH-HHh-----hcCCCCEEe----ecchhhHHHHHHHHHhcCC-CcEEEEECchH
Confidence 357788888887678888855 33342 111 112334442 7888888888888888776 89999999999
Q ss_pred cchhhHHHHHHHhHhc-CCCEEEEEecCC-cccccccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhh
Q psy4881 225 ANQGQVFEVYNIAKLW-NIPCIFVCENNG-YGMGTSSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCR 300 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~-~LPvi~Vv~NN~-~gi~~~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar 300 (423)
+++.. .+|.|++++ ++|+++||.||+ |++..........++|.+ +++|+++++|+ +++++.+++++|++
T Consensus 71 f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~--- 143 (157)
T cd02001 71 LLMNP--GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA--- 143 (157)
T ss_pred HHhcc--cHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh---
Confidence 98753 449999999 599999888777 576543222223578887 67899999997 79999999999884
Q ss_pred CCCCcEEEEEEEec
Q psy4881 301 SDKGPILLETATYR 314 (423)
Q Consensus 301 ~~~gP~lIev~t~R 314 (423)
.++|++||+.+.+
T Consensus 144 -~~gp~vi~v~i~~ 156 (157)
T cd02001 144 -TTGPTLLHAPIAP 156 (157)
T ss_pred -CCCCEEEEEEecC
Confidence 5899999999853
No 97
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.80 E-value=1.8e-18 Score=159.72 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=111.8
Q ss_pred HHHHHHHHhhccCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Q psy4881 146 SQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAA 225 (423)
Q Consensus 146 ~~vi~~l~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~ 225 (423)
+.+++++++.+++.++++|.|...+ .+.. ..+.+++++ . +|+||+++|+|+|++++. +++|||++|||++
T Consensus 2 ~~~~~~l~~~l~d~iiv~d~G~~~~-~~~~----~~~~~~~~~-~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f 71 (181)
T TIGR03846 2 IDAIRAIASYLEDELVVSNIGVPSK-ELYA----IRDRPLNFY-M---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSL 71 (181)
T ss_pred HHHHHHHHHhCCCCEEEecCCHhHH-HHHh----hhcCCCCee-e---ccccccHHHHHHHHHHcC-CCcEEEEEcchHH
Confidence 4678889998886688888654322 1221 111223344 2 678888889999988888 9999999999999
Q ss_pred chhhHHHHHHHhHhcC-CCEEEEEecCC-ccccccccccc-CCchhhh--hcCCCCeEE-eeCCCHHHHHHHHHHHHHHh
Q psy4881 226 NQGQVFEVYNIAKLWN-IPCIFVCENNG-YGMGTSSERAS-ASVDYYT--RGDYIPGIW-VDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 226 ~~G~~~EaLn~A~~~~-LPvi~Vv~NN~-~gi~~~~~~~~-~~~~~~~--~a~G~~~~~-VdG~d~~~v~~al~~A~~~a 299 (423)
+++. ++|.+|++++ +|+++||.||+ |++...++... ..++|.+ +++|+++.+ |+ +++++.++++ ++
T Consensus 72 ~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~--- 143 (181)
T TIGR03846 72 LMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVA--DEEELRDALK-AL--- 143 (181)
T ss_pred Hhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HH---
Confidence 9864 5599999999 59999998888 67765322212 2568887 788999988 87 7899988885 65
Q ss_pred hCCCCcEEEEEEEecC
Q psy4881 300 RSDKGPILLETATYRY 315 (423)
Q Consensus 300 r~~~gP~lIev~t~R~ 315 (423)
+.++|+||||.+.+.
T Consensus 144 -~~~~p~li~v~~~~~ 158 (181)
T TIGR03846 144 -AMKGPTFIHVKVKPG 158 (181)
T ss_pred -cCCCCEEEEEEeCCC
Confidence 468999999999653
No 98
>KOG1185|consensus
Probab=99.79 E-value=1e-18 Score=177.29 Aligned_cols=260 Identities=16% Similarity=0.107 Sum_probs=184.2
Q ss_pred CccccccCCCCCCCCcccccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCC-cccCCccccccc-cc
Q psy4881 29 TEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYHNK-FH 104 (423)
Q Consensus 29 ~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~~~-~~ 104 (423)
||+-.|-++..||.+..-+ =...++|.|..+ +.|++- .-.-+++-++ +..+.+.+++|+ +.
T Consensus 251 tpMgKGll~d~hPl~v~~a-------RS~ALk~ADvvll~Garlnw--------iLhfG~~Pk~~kd~KfIqvd~n~Eel 315 (571)
T KOG1185|consen 251 TPMGKGLLPDNHPLNVSSA-------RSLALKKADVVLLAGARLNW--------ILHFGLPPKWSKDVKFIQVDINPEEL 315 (571)
T ss_pred CcccccCCCCCCchhhhHH-------HHHHHhhCCEEEEecceeeE--------EEecCCCCccCCCceEEEEeCCHHHH
Confidence 4888999999999865433 234566666655 555662 2223444445 456678999999 58
Q ss_pred cCc-c---cceeecCCCccchhhcccCC-------Cccccccc---------------cCCCCCCCHHHHHHHHHhhcc-
Q psy4881 105 KDN-V---GPLIIDGNTFPDYVLDKYTL-------PTPNRSIT---------------YPTPSTMSDSQVDKAIDKYVK- 157 (423)
Q Consensus 105 g~n-v---gpl~~d~~~vl~~~l~~~~~-------~~~~r~~~---------------~~~~~~~~p~~vi~~l~~~~~- 157 (423)
+.| + .+|.+|.+.++..+.....+ +.+|...+ ..+..++++..++..+++.++
T Consensus 316 ~~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~ 395 (571)
T KOG1185|consen 316 GNNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPN 395 (571)
T ss_pred hcccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCC
Confidence 888 3 48999999887666544321 23553211 124456999999999999997
Q ss_pred C-CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHH
Q psy4881 158 E-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNI 236 (423)
Q Consensus 158 ~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~ 236 (423)
+ .++++++++.|-.+... .. .+.++++. -.|+.|+||++.|.|+|+++..|++.|+|+-||++|+.. .+| +.|
T Consensus 396 ~d~ilVsEGantmdigr~~--l~-~~~Pr~rL-DaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfS-aME-~ET 469 (571)
T KOG1185|consen 396 DDTILVSEGANTMDIGRTL--LP-PRGPRRRL-DAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFS-AME-LET 469 (571)
T ss_pred CCcEEEecCCcchhhhhhh--cc-CCCccccc-CCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcc-hhh-HHH
Confidence 4 47788888777522221 11 11344344 689999999999999999999999999999999999874 366 999
Q ss_pred hHhcCCCEEEEEecC-C-ccccccccccc---------------CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHH
Q psy4881 237 AKLWNIPCIFVCENN-G-YGMGTSSERAS---------------ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVN 297 (423)
Q Consensus 237 A~~~~LPvi~Vv~NN-~-~gi~~~~~~~~---------------~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~ 297 (423)
+++|+|||++||.|| + ||..+...... .+.+|-+ +++|.+|+.|+ .++++..+++++.+
T Consensus 470 ~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q 547 (571)
T KOG1185|consen 470 FVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ 547 (571)
T ss_pred HHHhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh
Confidence 999999988888866 4 35543322110 1233433 78899999998 89999999998885
Q ss_pred HhhCCCCcEEEEEEEec
Q psy4881 298 HCRSDKGPILLETATYR 314 (423)
Q Consensus 298 ~ar~~~gP~lIev~t~R 314 (423)
.+++|++|.+.+.+
T Consensus 548 ---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 548 ---DTDKPSVINVLIGP 561 (571)
T ss_pred ---cCCCCeEEEEEecc
Confidence 57799999999865
No 99
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.79 E-value=4.3e-18 Score=158.19 Aligned_cols=172 Identities=14% Similarity=0.032 Sum_probs=117.6
Q ss_pred HHHHHHHhhcc-CCeEEeCCCCcccccccccc-ccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVK-ENEYSQDSDENMTNQLVTVT-NQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~-~~~~~~d~g~~~~~~~~~~~-~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
.+++++++.++ +.++++|.|... ..++... .+....++.++ ++ |+||+++|+|+|++++.|+++|||++|||+
T Consensus 3 ~~~~~l~~~l~~d~ivv~d~G~~~-~~~~~~~~~~~~~~~~~~~-~~---g~mG~~lpaAiGaala~p~~~Vv~i~GDG~ 77 (188)
T cd03371 3 DAIEIVLSRAPATAAVVSTTGMTS-RELFELRDRPGGGHAQDFL-TV---GSMGHASQIALGIALARPDRKVVCIDGDGA 77 (188)
T ss_pred HHHHHHHhhcCCCCEEEECCCcch-HHHHHhhcCCCCCccCcee-ec---CccccHHHHHHHHHHhCCCCcEEEEeCCcH
Confidence 56788888886 467888855432 2222111 00000123344 22 778888888888888889999999999999
Q ss_pred cchhhHHHHHHHhHhcCC-CEEEEEecCC-cccccccccccCCchhhh--hcCCCCe-EEeeCCCHHHHHHHHHHHHHHh
Q psy4881 225 ANQGQVFEVYNIAKLWNI-PCIFVCENNG-YGMGTSSERASASVDYYT--RGDYIPG-IWVDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~L-Pvi~Vv~NN~-~gi~~~~~~~~~~~~~~~--~a~G~~~-~~VdG~d~~~v~~al~~A~~~a 299 (423)
+++. .++|.+++++++ |+++||.||+ |++..........++|.+ +++|+++ .+|+ +++++.+++++|++
T Consensus 78 f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~-- 151 (188)
T cd03371 78 ALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALA-- 151 (188)
T ss_pred HHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh--
Confidence 9874 356999999997 6888888887 476532222223468887 6789987 5898 89999999988873
Q ss_pred hCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHH
Q psy4881 300 RSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 334 (423)
Q Consensus 300 r~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~ 334 (423)
.++|+|||+.+.+..+ +... ..++++.+.+
T Consensus 152 --~~~p~lIev~~~~~~~-~~~~--~~~~~~~~~~ 181 (188)
T cd03371 152 --ADGPAFIEVKVRPGSR-SDLG--RPTTSPIENK 181 (188)
T ss_pred --CCCCEEEEEEecCCCC-CCCC--CCCCCHHHHH
Confidence 5799999999977654 2222 2355655543
No 100
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.79 E-value=8.3e-19 Score=175.89 Aligned_cols=131 Identities=25% Similarity=0.332 Sum_probs=104.4
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGY 253 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~ 253 (423)
++..++|++|+ +++|+|+|+|.|+.+ -+..|+|++|||.+++|..|||+.+|+.++|. +|+|+.+|+.
T Consensus 105 gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~ 184 (332)
T PF00456_consen 105 GIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGI 184 (332)
T ss_dssp T-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESE
T ss_pred eeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCc
Confidence 45678999997 999999999998743 36789999999999999999999999999999 9999999999
Q ss_pred ccccccccccCCchhhh--hcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 254 GMGTSSERASASVDYYT--RGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 254 gi~~~~~~~~~~~~~~~--~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
++......... .++.+ +++|+..++| ||||+++|.+|+++|.. ..++|++|.+.|.+++|-+.
T Consensus 185 q~dg~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~ 250 (332)
T PF00456_consen 185 QIDGPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPF 250 (332)
T ss_dssp ETTEEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTT
T ss_pred ccCCCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchh
Confidence 88776654332 34544 6899999998 99999999999998874 34799999999999999853
No 101
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.78 E-value=2.1e-18 Score=155.58 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHhhccC-CeEEeCCCC-cccc-ccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 148 VDKAIDKYVKE-NEYSQDSDE-NMTN-QLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 148 vi~~l~~~~~~-~~~~~d~g~-~~~~-~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
+++.+.+.+++ ++++.|.|. ..+. .+... . .+.++. ..++.++|+.++++|+|++++.++++|++++|||+
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~----~-~~~~~~-~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~ 75 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPL----R-RGRRFL-TSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGG 75 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheee----C-CCCcEE-eCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcH
Confidence 45677777764 577778554 3331 12211 0 112233 45566788888888888888899999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccc----------cccCCchhhh--hcCCCCeEEeeCCCHHHHHHH
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSE----------RASASVDYYT--RGDYIPGIWVDGMDILAVREA 291 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~----------~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~a 291 (423)
++++ +++|++|+++++|+++||.||++ ++....+ .....++|.+ +++|+++++|+ +++++.++
T Consensus 76 ~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a 151 (168)
T cd00568 76 FMMT--GQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAA 151 (168)
T ss_pred Hhcc--HHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHH
Confidence 9983 58899999999999999999986 5544332 1123457776 67899999998 58888888
Q ss_pred HHHHHHHhhCCCCcEEEEEEE
Q psy4881 292 ARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 292 l~~A~~~ar~~~gP~lIev~t 312 (423)
+++++ +.+||+|||+.|
T Consensus 152 ~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 152 LAEAL----AAGGPALIEVKT 168 (168)
T ss_pred HHHHH----hCCCCEEEEEEC
Confidence 87776 578999999975
No 102
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.78 E-value=9e-18 Score=154.80 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=113.6
Q ss_pred HHHHHHHHhhccCCeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 146 SQVDKAIDKYVKENEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 146 ~~vi~~l~~~~~~~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
+.+++.|++.+++.++++|.|.. .+ +... .+.+++++ . .|+||+++|+|+|++++.+ ++|||++|||+
T Consensus 2 ~~~~~~l~~~~~~~~vv~d~G~~~~~--~~~~----~~~~~~~~-~---~g~mG~~lp~AiGaala~~-~~vv~i~GDG~ 70 (179)
T cd03372 2 RDAIKTLIADLKDELVVSNIGFPSKE--LYAA----GDRPLNFY-M---LGSMGLASSIGLGLALAQP-RKVIVIDGDGS 70 (179)
T ss_pred HHHHHHHHHhCCCCeEEeCCCHhHHH--HHHc----cCcccccc-c---ccchhhHHHHHHHHHhcCC-CcEEEEECCcH
Confidence 46788899888866788885543 22 1111 11122233 1 6778888888888888777 89999999999
Q ss_pred cchhhHHHHHHHhHhcCC-CEEEEEecCC-ccccccccccc-CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHh
Q psy4881 225 ANQGQVFEVYNIAKLWNI-PCIFVCENNG-YGMGTSSERAS-ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~L-Pvi~Vv~NN~-~gi~~~~~~~~-~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~a 299 (423)
++++. .+|.+|+++++ |+++||.||+ |++........ ..++|.+ +++|+++.+|+| +++++.+++++++
T Consensus 71 f~m~~--~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~--- 144 (179)
T cd03372 71 LLMNL--GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL--- 144 (179)
T ss_pred HHhCH--HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc---
Confidence 98753 45999999995 6777766555 68764332222 2567877 678999999987 7888888887775
Q ss_pred hCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHH
Q psy4881 300 RSDKGPILLETATYRYSGHSMSDPGTSYRTRDEI 333 (423)
Q Consensus 300 r~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~ 333 (423)
++|+|||+.|.+..+ +. +..++++.++
T Consensus 145 ---~gp~lIev~~~~~~~-~~---~~~~~~~~~~ 171 (179)
T cd03372 145 ---DGPSFIHVKIKPGNT-DV---PNIPRDPVEI 171 (179)
T ss_pred ---CCCEEEEEEEcCCCC-CC---CCCCCCHHHH
Confidence 689999999976544 21 2345555544
No 103
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.76 E-value=8.4e-18 Score=169.82 Aligned_cols=130 Identities=19% Similarity=0.129 Sum_probs=113.3
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHh-------cCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKY-------SGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~-------~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+..++|++|+ +++|+|+|+|.|+ .+.+..|+|++|||++++|.+||++++|+.++|. +|+|+.+|++++..
T Consensus 113 ve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG 192 (386)
T cd02017 113 WEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDG 192 (386)
T ss_pred eeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCC
Confidence 5668999997 9999999999998 5578899999999999999999999999999996 99999999998887
Q ss_pred ccccc-cCCchhhh--hcCCCCeEEee-----------------------------------------------------
Q psy4881 258 SSERA-SASVDYYT--RGDYIPGIWVD----------------------------------------------------- 281 (423)
Q Consensus 258 ~~~~~-~~~~~~~~--~a~G~~~~~Vd----------------------------------------------------- 281 (423)
++... ....++.+ +|||+.++.|+
T Consensus 193 ~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~ 272 (386)
T cd02017 193 PVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKA 272 (386)
T ss_pred cccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 77653 23345665 68999999998
Q ss_pred ----------------CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 282 ----------------GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 282 ----------------G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
|||+++|.+|++++.. ..++|++|.+.|.+++|-+
T Consensus 273 ~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 273 LVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence 9999999999988764 2468999999999999976
No 104
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.76 E-value=8.1e-18 Score=154.75 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=108.8
Q ss_pred HHHHHHHhhccC-CeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKE-NEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
-+++++++.+++ .++++|.| +.+|... + + .+. .++|+||+++++|+|++++.++++||+++|||+
T Consensus 14 ~~~~~l~~~l~~~~iv~~D~G~~~~~~~~-----~-~----~~~---~~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG~ 80 (178)
T cd02008 14 PSFYALRKAFKKDSIVSGDIGCYTLGALP-----P-L----NAI---DTCTCMGASIGVAIGMAKASEDKKVVAVIGDST 80 (178)
T ss_pred HHHHHHHHHhcCCeEEecCcCcccccccC-----C-h----hhc---cccccCccHHHHHhhHHhhCCCCCEEEEecChH
Confidence 367889888875 57788844 4555211 1 1 111 247889999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccccc---------CCchhhh--hcCCCCeEEe-eCCCHHHHHHH
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERAS---------ASVDYYT--RGDYIPGIWV-DGMDILAVREA 291 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~---------~~~~~~~--~a~G~~~~~V-dG~d~~~v~~a 291 (423)
+.+.. .++|.+|+++++|+++||.||+ |++...++... ..+||.+ +++|+++++| ++.+.+++.++
T Consensus 81 f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 81 FFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred Hhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 97632 4679999999999888888887 47665432210 1367777 6789999999 55666666688
Q ss_pred HHHHHHHhhCCCCcEEEEEEE
Q psy4881 292 ARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 292 l~~A~~~ar~~~gP~lIev~t 312 (423)
+++|+ +.++|+||++..
T Consensus 160 l~~a~----~~~gp~lI~v~~ 176 (178)
T cd02008 160 LKEAL----AVPGVSVIIAKR 176 (178)
T ss_pred HHHHH----hCCCCEEEEEeC
Confidence 88877 468999999864
No 105
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.75 E-value=3.3e-17 Score=157.33 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=114.4
Q ss_pred HHHHHHHHhhccCC-eEEeCCCC-ccccc-cccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCC
Q psy4881 146 SQVDKAIDKYVKEN-EYSQDSDE-NMTNQ-LVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGD 222 (423)
Q Consensus 146 ~~vi~~l~~~~~~~-~~~~d~g~-~~~~~-~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GD 222 (423)
..++++|++.++++ +++.|.|. .+|.. |...+.+ .... ....+..++|++++++|++++++.|+++|||++||
T Consensus 14 ~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~---~~~~-~~~~~~~gsmG~GlpaAiGa~~a~p~r~VV~i~GD 89 (235)
T cd03376 14 ALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWR---VPWI-HVAFENAAAVASGIEAALKALGRGKDITVVAFAGD 89 (235)
T ss_pred HHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCcccc---ccce-ehhhcCHHHHHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 34678899988765 67778554 34433 3321111 1111 11112336899999999999999999999999999
Q ss_pred Ccc-chhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc---------------------ccCCchhhh--hcCCCCe
Q psy4881 223 GAA-NQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER---------------------ASASVDYYT--RGDYIPG 277 (423)
Q Consensus 223 Ga~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~---------------------~~~~~~~~~--~a~G~~~ 277 (423)
|++ +++ .++|.+|+++++|+++||.||+ ||+...+.. ....+||.+ +++|+++
T Consensus 90 G~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~ 167 (235)
T cd03376 90 GGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPY 167 (235)
T ss_pred chHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcE
Confidence 995 776 3559999999999999999999 475321110 012357776 6789887
Q ss_pred EE-eeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 278 IW-VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 278 ~~-VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
+. +.-.+++++.+++++|++ .+||+|||+.+.=...|..
T Consensus 168 ~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~~~~~ 207 (235)
T cd03376 168 VATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPTGWRF 207 (235)
T ss_pred EEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCCC
Confidence 63 333489999999999884 5899999999865444433
No 106
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.73 E-value=3e-17 Score=153.12 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=101.8
Q ss_pred CCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc-cchhhHHHHHHH
Q psy4881 158 ENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA-ANQGQVFEVYNI 236 (423)
Q Consensus 158 ~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa-~~~G~~~EaLn~ 236 (423)
+.++++|.|..+|. .+. + ..++..++||+++|+|+|++++.|+++||+++|||+ ++++ ..+|.+
T Consensus 27 d~ii~~D~G~~~~~---~~~---~-------~~~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f~m~--~~eL~t 91 (193)
T cd03375 27 KVVVVSGIGCSSRL---PYY---F-------NTYGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLAAIG--GNHFIH 91 (193)
T ss_pred CEEEEeCCChhcee---hhh---c-------cccchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHhhcc--HHHHHH
Confidence 35788996665552 111 1 123335889999999999999999999999999999 5675 345999
Q ss_pred hHhcCCCEEEEEecCC-ccccccccccc----------------CCchhhh--hcCCCCeE---EeeCCCHHHHHHHHHH
Q psy4881 237 AKLWNIPCIFVCENNG-YGMGTSSERAS----------------ASVDYYT--RGDYIPGI---WVDGMDILAVREAARF 294 (423)
Q Consensus 237 A~~~~LPvi~Vv~NN~-~gi~~~~~~~~----------------~~~~~~~--~a~G~~~~---~VdG~d~~~v~~al~~ 294 (423)
|+++++|+++||.||+ |++.+.++... ..++|.+ +++|++++ +|+ +++++.+++++
T Consensus 92 a~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~--~~~el~~al~~ 169 (193)
T cd03375 92 AARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSG--DIKQLKEIIKK 169 (193)
T ss_pred HHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecC--CHHHHHHHHHH
Confidence 9999999999999888 48766443200 1256776 67898885 566 89999999999
Q ss_pred HHHHhhCCCCcEEEEEEEe
Q psy4881 295 AVNHCRSDKGPILLETATY 313 (423)
Q Consensus 295 A~~~ar~~~gP~lIev~t~ 313 (423)
|++ .++|+|||+.+.
T Consensus 170 al~----~~gp~vIev~~~ 184 (193)
T cd03375 170 AIQ----HKGFSFVEVLSP 184 (193)
T ss_pred HHh----cCCCEEEEEECC
Confidence 984 689999999864
No 107
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.72 E-value=8.2e-18 Score=150.62 Aligned_cols=120 Identities=23% Similarity=0.329 Sum_probs=97.1
Q ss_pred CCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc
Q psy4881 184 TNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA 262 (423)
Q Consensus 184 ~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~ 262 (423)
+++++ .++..++|+.++|+|+|++++.|+++||+++|||++.+. . .+|.+|+++++|+++||.||+ |++....+..
T Consensus 18 p~~~~-~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~-~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~ 94 (153)
T PF02775_consen 18 PRRFL-TSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-L-QELATAVRYGLPVVIVVLNNGGYGMTGGQQTP 94 (153)
T ss_dssp TTEEE-ESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-G-GGHHHHHHTTSSEEEEEEESSBSHHHHHHHHH
T ss_pred CCeEE-cCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-c-chhHHHhhccceEEEEEEeCCcceEecccccc
Confidence 34455 577889999999999999999999999999999999886 3 449999999999999999888 4775544311
Q ss_pred -------------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 263 -------------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 263 -------------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
...++|.+ +++|+++++|+..|++++.+++++|+ +.+||+||||
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred CcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 23457776 78899999998555699999999998 4789999997
No 108
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.72 E-value=8.4e-17 Score=157.68 Aligned_cols=153 Identities=17% Similarity=0.087 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHhhc--cCC-eEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEE
Q psy4881 141 STMSDSQVDKAIDKYV--KEN-EYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCF 217 (423)
Q Consensus 141 ~~~~p~~vi~~l~~~~--~~~-~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv 217 (423)
..+.|+.++++++++. +++ ++++|.|.... +.. +. . .....++||.|+++|+|+|++.|+++||
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~--~~~----~~-~------~~~~~~~~G~alPaAiGaklA~Pdr~VV 90 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGR--FSS----YV-N------CNTVHTTHGRAVAYATGIKLANPDKHVI 90 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHHH--hhc----cC-C------CCceeeccccHHHHHHHHHHHCCCCeEE
Confidence 4478999999999983 544 56777553211 111 11 1 1122357789999999999999999999
Q ss_pred EEeCCCccch-hhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------------cCCchhhh--hcCCCCe
Q psy4881 218 ALYGDGAANQ-GQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------------SASVDYYT--RGDYIPG 277 (423)
Q Consensus 218 ~~~GDGa~~~-G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------------~~~~~~~~--~a~G~~~ 277 (423)
++.|||++.+ |. .| +.+|+++++||++||.||+ ||+...++.. ....||.+ +++|+.+
T Consensus 91 ~i~GDG~f~~~g~-~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~ 168 (277)
T PRK09628 91 VVSGDGDGLAIGG-NH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASF 168 (277)
T ss_pred EEECchHHHHhhH-HH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCce
Confidence 9999999753 43 33 8889999999999999998 4886533210 01235566 6789887
Q ss_pred E---EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 278 I---WVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 278 ~---~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+ +|+ +++++.+++++|++ .+||+||||.+.-
T Consensus 169 va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~c 202 (277)
T PRK09628 169 VARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSNC 202 (277)
T ss_pred EEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCCC
Confidence 4 776 89999999999984 6899999998754
No 109
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=6e-16 Score=162.50 Aligned_cols=139 Identities=22% Similarity=0.212 Sum_probs=116.8
Q ss_pred ccccccCCeeeecCCCCCC-cHHHHHHHHHHHhcC-----C-----CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EE
Q psy4881 178 NQLVTVTNQLVTVTNQLVT-VPLGVGIALAAKYSG-----T-----KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CI 245 (423)
Q Consensus 178 ~~~~~~~~~~~~~sg~~g~-l~~A~GaA~a~k~~~-----~-----~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi 245 (423)
++.|....++-+++|.||| ++.|+|+|+|.++.. | |..++|++|||++++|..+|+..+|+.++|. +|
T Consensus 102 HPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLI 181 (663)
T COG0021 102 HPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLI 181 (663)
T ss_pred CCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEE
Confidence 3444334557788999997 999999999988743 2 4589999999999999999999999999999 99
Q ss_pred EEEecCCcccccccccccCCchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 246 FVCENNGYGMGTSSERASASVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 246 ~Vv~NN~~gi~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
++..+|+++|...+.... +.|..+ +||||..+ .+||||++++.+|+++|+. ..++|+||+|+|..++|-+.
T Consensus 182 vlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 182 VLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred EEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCC
Confidence 999999999988776554 345555 68999999 8899999999999999985 47899999999999998654
No 110
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.70 E-value=2e-17 Score=161.52 Aligned_cols=218 Identities=18% Similarity=0.104 Sum_probs=165.5
Q ss_pred cCCccccccc-cccCccc---ceeecCCCccchhhcccC------CCcc---cccc-----------ccCCCCCCCHHHH
Q psy4881 93 CDNSHKYHNK-FHKDNVG---PLIIDGNTFPDYVLDKYT------LPTP---NRSI-----------TYPTPSTMSDSQV 148 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nvg---pl~~d~~~vl~~~l~~~~------~~~~---~r~~-----------~~~~~~~~~p~~v 148 (423)
..-+|.++.| .+|+.+. .++.|++..++.++.... ..+. |... ..-++.+++||+|
T Consensus 296 r~fihvdieptqigrvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrv 375 (592)
T COG3960 296 RKFIHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRV 375 (592)
T ss_pred ceEEEEeccccccceeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHH
Confidence 3447999999 7999885 688899998888766421 1122 2111 0125678999999
Q ss_pred HHHHHhhccCC-e-EEeCCCCcc-ccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Q psy4881 149 DKAIDKYVKEN-E-YSQDSDENM-TNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAA 225 (423)
Q Consensus 149 i~~l~~~~~~~-~-~~~d~g~~~-~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~ 225 (423)
.+++++.++.+ - ++|.+-.|. .++|... | .++.|+ .+|..|.+++.+++|+|.+.+.|++.+|++.||-.|
T Consensus 376 yeemn~~fgrd~~yvstiglsqia~aqflhv----~-~pr~wi-ncgqagplgwtipaalgv~~adp~r~vvalsgdydf 449 (592)
T COG3960 376 YEEMNKAFGRDVCYVTTIGLSQIAAAQFLHV----F-KPRHWI-NCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDF 449 (592)
T ss_pred HHHHHhhcCCceeEEEeccHHHHhhhhhhhh----c-CCccee-ecCccCCcccccchhhceeecCCCCceEEeecCchH
Confidence 99999998654 3 445554554 3556543 3 234455 678888899999999999989999999999999999
Q ss_pred chhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccC--------------------Cchhhh--hcCCCCeEEeeC
Q psy4881 226 NQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASA--------------------SVDYYT--RGDYIPGIWVDG 282 (423)
Q Consensus 226 ~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~--------------------~~~~~~--~a~G~~~~~VdG 282 (423)
+. ..|+|...+++++|-|.|+.||.| |..++.|+... ..|..+ ++.|++.+||-
T Consensus 450 qf--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~- 526 (592)
T COG3960 450 QF--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF- 526 (592)
T ss_pred HH--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec-
Confidence 87 468899999999999999999999 99888775431 011111 45678889997
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 283 MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 283 ~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
+++++..|+.+|.....+..-|+++|+...|...-++
T Consensus 527 -~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnism 563 (592)
T COG3960 527 -KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISM 563 (592)
T ss_pred -ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcccc
Confidence 8999999999998888888999999999999776555
No 111
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.70 E-value=2.7e-16 Score=151.25 Aligned_cols=157 Identities=12% Similarity=0.074 Sum_probs=111.0
Q ss_pred HHHHHHHhhcc--C-CeEEeC-CCCccccccccccccccccCCeeeecC-CCCCCcHHHHHHHHHHHhc-----CCCCEE
Q psy4881 147 QVDKAIDKYVK--E-NEYSQD-SDENMTNQLVTVTNQLVTVTNQLVTVT-NQLVTVPLGVGIALAAKYS-----GTKGVC 216 (423)
Q Consensus 147 ~vi~~l~~~~~--~-~~~~~d-~g~~~~~~~~~~~~~~~~~~~~~~~~s-g~~g~l~~A~GaA~a~k~~-----~~~~~v 216 (423)
-+++++.+.++ + .+++.| +.+++|.... .....+..+..+. ++.|+|++++++|+|++++ .++++|
T Consensus 15 ~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~----~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~V 90 (237)
T cd02018 15 TAVRVVLAALPAPEDTVIANSTGCSSVYASTA----PFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDV 90 (237)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCccceecccC----cCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcE
Confidence 35677888876 5 477888 4455663221 1111112223221 1347899999999999999 899999
Q ss_pred EEEeCCCccc-hhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc----------------cCCchhhh--hcCCCC
Q psy4881 217 FALYGDGAAN-QGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA----------------SASVDYYT--RGDYIP 276 (423)
Q Consensus 217 v~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~----------------~~~~~~~~--~a~G~~ 276 (423)
||++|||++. +| +. +|.++.++++|+++||.||+ ||+...++.. ...+||++ +++|++
T Consensus 91 v~i~GDG~~~~~g-~~-~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~ 168 (237)
T cd02018 91 VVIGGDGATYDIG-FG-ALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCV 168 (237)
T ss_pred EEEeCchHHHhcc-HH-HHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCC
Confidence 9999999974 54 33 48889999999999999998 4765422210 12467887 678999
Q ss_pred eEE---eeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 277 GIW---VDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 277 ~~~---VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+++ |+ +++++.+++++|++ +.+||+||||.+.-
T Consensus 169 ~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~c 204 (237)
T cd02018 169 YVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTPC 204 (237)
T ss_pred EEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCCC
Confidence 985 77 78999999998883 26899999999743
No 112
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.69 E-value=4.5e-17 Score=192.47 Aligned_cols=210 Identities=10% Similarity=0.013 Sum_probs=141.7
Q ss_pred Cccccccc-cccCcc---cceeecCCCccchhhcccC--CCccccccc----------c--C--CCCCCCHHHHHHHHHh
Q psy4881 95 NSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT--LPTPNRSIT----------Y--P--TPSTMSDSQVDKAIDK 154 (423)
Q Consensus 95 g~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~--~~~~~r~~~----------~--~--~~~~~~p~~vi~~l~~ 154 (423)
.+|+++++ +++.+. ..|++|++.+++.++.... ....|...+ . . ....++|.++++++++
T Consensus 626 ~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 705 (1655)
T PLN02980 626 YILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQIHAESSLTEPYVAHVISE 705 (1655)
T ss_pred EEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHH
Confidence 67888888 466544 4788898888776543221 112343221 0 0 1224789999999999
Q ss_pred hccC-CeEEeCCCC-----cccc-ccccc-------cccccccCCeeeecCCCCCCcHH--HHHHHHHHHhcCCCCEEEE
Q psy4881 155 YVKE-NEYSQDSDE-----NMTN-QLVTV-------TNQLVTVTNQLVTVTNQLVTVPL--GVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 155 ~~~~-~~~~~d~g~-----~~~~-~~~~~-------~~~~~~~~~~~~~~sg~~g~l~~--A~GaA~a~k~~~~~~~vv~ 218 (423)
.+++ .+++.|.+. .+|. .+... ..+. ..+++++..++..|+||+ ++|+|+|++++. +++|+|
T Consensus 706 ~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~-~~p~~~i~~~~~~G~mG~~G~lpaAIGaala~-~r~Vv~ 783 (1655)
T PLN02980 706 ALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSA-ELPCQWIQVAGNRGASGIDGLLSTAIGFAVGC-NKRVLC 783 (1655)
T ss_pred hCCCCCeEEEECcHHHHHHHHcCCcccccccccccccccc-ccccccceEEecCCccchhhhHHHHHHHhhcC-CCCEEE
Confidence 9975 467777543 2342 11110 0001 122333423566777777 588888888777 889999
Q ss_pred EeCCCccchhhHHHHHHHhHhc--CCCEEEEEecCCc-cccccc------c-----ccc---CCchhhh--hcCCCCeEE
Q psy4881 219 LYGDGAANQGQVFEVYNIAKLW--NIPCIFVCENNGY-GMGTSS------E-----RAS---ASVDYYT--RGDYIPGIW 279 (423)
Q Consensus 219 ~~GDGa~~~G~~~EaLn~A~~~--~LPvi~Vv~NN~~-gi~~~~------~-----~~~---~~~~~~~--~a~G~~~~~ 279 (423)
++|||||++.. .+|.||+++ ++|+++||.||+. ||.... + ... ..++|.+ ++||+++.+
T Consensus 784 i~GDGsF~m~~--~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~r 861 (1655)
T PLN02980 784 VVGDISFLHDT--NGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLH 861 (1655)
T ss_pred EEehHHHHhhh--hHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceee
Confidence 99999999853 459999984 9999999998884 665431 1 101 2467877 788999999
Q ss_pred eeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 280 VDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 280 VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
|+ +++++.+++++|. +.++|+||||.|.|
T Consensus 862 V~--~~~eL~~aL~~a~----~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 862 VG--TKSELEDALFTSQ----VEQMDCVVEVESSI 890 (1655)
T ss_pred cC--CHHHHHHHHHHhh----ccCCCEEEEEecCh
Confidence 98 8999999998887 46899999999965
No 113
>KOG0451|consensus
Probab=99.68 E-value=3.8e-16 Score=160.00 Aligned_cols=194 Identities=22% Similarity=0.255 Sum_probs=160.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcC------C--------CCEEEEEeCCCc-cchhhHHHHHHHhHhc--CCC-EEEEEecCC
Q psy4881 191 TNQLVTVPLGVGIALAAKYSG------T--------KGVCFALYGDGA-ANQGQVFEVYNIAKLW--NIP-CIFVCENNG 252 (423)
Q Consensus 191 sg~~g~l~~A~GaA~a~k~~~------~--------~~~vv~~~GDGa-~~~G~~~EaLn~A~~~--~LP-vi~Vv~NN~ 252 (423)
|+.-+.-|+|+|-+.+++... | ....|.+.|||+ .++|.++|+++++-.- .+. -+.+|.||+
T Consensus 283 SHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQ 362 (913)
T KOG0451|consen 283 SHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQ 362 (913)
T ss_pred hhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEeccc
Confidence 555567899999998887642 1 123567889999 4899999999987532 333 788999999
Q ss_pred cccccccccccCC---chhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCC
Q psy4881 253 YGMGTSSERASAS---VDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRT 329 (423)
Q Consensus 253 ~gi~~~~~~~~~~---~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~ 329 (423)
.|+.++..+..++ .|++ ++++++.+.|+|.|++++.+|.+-|+++-|+.++.++|+..|||..||++-|+++ |.+
T Consensus 363 vgfTtp~~rGRSs~ycsDia-K~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-fts 440 (913)
T KOG0451|consen 363 VGFTTPGDRGRSSAYCSDIA-KSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTS 440 (913)
T ss_pred ccccCcccccccchhhhHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccC
Confidence 9999887765432 3333 5778999999999999999999999999999999999999999999999999995 999
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy4881 330 RDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVG 386 (423)
Q Consensus 330 ~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~ 386 (423)
+-.+++.++...-...|.++|+++|++|++++++++++..+.+.+-++.+.+.-.|+
T Consensus 441 pvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 441 PVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred hhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 999998875445557789999999999999999999999999999988877665443
No 114
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.68 E-value=7.8e-16 Score=152.46 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHHhh-c-cCC-eEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 142 TMSDSQVDKAIDKY-V-KEN-EYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 142 ~~~p~~vi~~l~~~-~-~~~-~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
.+-+..+++++.++ + +++ ++++|.|...+ .. .+ +.+++..|+||.|+++|+|+|+++|+++||+
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~vivsdiG~s~~---~~---~y-------l~~~~~~g~mG~alpaAiGaklA~pd~~VV~ 93 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKVVVVSGIGCSSK---IP---GY-------FLSHGLHTLHGRAIAFATGAKLANPDLEVIV 93 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCcHhhh---hh---hh-------cccCccchhhccHHHHHHHHHHHCCCCcEEE
Confidence 35577888999887 3 554 67788655433 11 11 1123333778999999999999999999999
Q ss_pred EeCCCcc-chhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc-c---------------cCCchhhh--hcCCCCeE
Q psy4881 219 LYGDGAA-NQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER-A---------------SASVDYYT--RGDYIPGI 278 (423)
Q Consensus 219 ~~GDGa~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-~---------------~~~~~~~~--~a~G~~~~ 278 (423)
+.|||++ ++|. .+|.+|+++++|+++||.||+ ||+.+.++. . ...++|.+ +++|+.++
T Consensus 94 i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~v 171 (301)
T PRK05778 94 VGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFV 171 (301)
T ss_pred EeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEE
Confidence 9999996 5663 449999999999999999998 587664321 0 01246666 67788876
Q ss_pred ---EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHH
Q psy4881 279 ---WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR 337 (423)
Q Consensus 279 ---~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~ 337 (423)
++. ++.++.+++++|++ .+||+||||.+.=-..+.. .+..+++.++.+|.
T Consensus 172 a~~~v~--~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~---~~~~~~~~~~~~~~ 224 (301)
T PRK05778 172 ARSFAG--DVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGR---NTSTKSPAYMREYY 224 (301)
T ss_pred EEeccC--CHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCc---CCcccCHHHHHHHH
Confidence 454 89999999999884 6899999987643222211 12356677777665
No 115
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.67 E-value=2.3e-15 Score=152.92 Aligned_cols=177 Identities=17% Similarity=0.087 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHhhccC-CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeC
Q psy4881 143 MSDSQVDKAIDKYVKE-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYG 221 (423)
Q Consensus 143 ~~p~~vi~~l~~~~~~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~G 221 (423)
++++++++.+.+.+++ ++++++.|.....-|..+.......++.++ + .|+||+++++|+|++++.++++|||+.|
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~-~---~GsMG~a~p~AlG~ala~p~r~Vv~i~G 247 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFL-T---VGSMGHASQIALGLALARPDQRVVCLDG 247 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceE-e---echhhhHHHHHHHHHHHCCCCCEEEEEC
Confidence 8999999999999865 678888654321101111000000123344 2 3778888888888888889999999999
Q ss_pred CCccchhhHHHHHHHhHhcCC-CEEEEEecCCc-ccccccccccCCchhhh--hcCCC-CeEEeeCCCHHHHHHHHHHHH
Q psy4881 222 DGAANQGQVFEVYNIAKLWNI-PCIFVCENNGY-GMGTSSERASASVDYYT--RGDYI-PGIWVDGMDILAVREAARFAV 296 (423)
Q Consensus 222 DGa~~~G~~~EaLn~A~~~~L-Pvi~Vv~NN~~-gi~~~~~~~~~~~~~~~--~a~G~-~~~~VdG~d~~~v~~al~~A~ 296 (423)
||++.|. ..+|.+++++++ |+++||.||+. +....+.......+|.+ +++|+ .+++|+ +.+++.+++++++
T Consensus 248 DGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~ 323 (361)
T TIGR03297 248 DGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVS--TLEELETALTAAS 323 (361)
T ss_pred hHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH
Confidence 9998874 245999999996 79999998884 55332222223567876 67786 467776 8999999999887
Q ss_pred HHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHH
Q psy4881 297 NHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 334 (423)
Q Consensus 297 ~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~ 334 (423)
+.+||+|||+.+....+-.. ++...++.|.+
T Consensus 324 ----~~~gp~lIeV~v~~g~~~~l---~rp~~~p~e~~ 354 (361)
T TIGR03297 324 ----SANGPRLIEVKVRPGSRADL---GRPTTSPPENK 354 (361)
T ss_pred ----hCCCcEEEEEEecCCCccCC---CCCCCCHHHHH
Confidence 35899999999977654433 22345666654
No 116
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.64 E-value=3.1e-15 Score=147.44 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=103.6
Q ss_pred HHHHHHhhc------cC-CeEEeCCCCc-cccccccccccccccCCeeeecCCCC-CCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 148 VDKAIDKYV------KE-NEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQL-VTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 148 vi~~l~~~~------~~-~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~-g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
+++++++.+ ++ .++++|.|.. .+.. ++ .++++ |+||.|+++|+|+|+++|+++||+
T Consensus 28 il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~--------------~~-~~~~~~g~mG~alpaAiGaklA~Pd~~VV~ 92 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVVSGIGCSGRLPG--------------YI-NTYGFHTIHGRALAIATGLKLANPDLTVIV 92 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCccccccCc--------------cc-cccchhhhhhcHHHHHHHHHHhCCCCcEEE
Confidence 667777766 44 4677775533 2311 11 23334 789999999999999999999999
Q ss_pred EeCCCc-cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccc-------c---------CCchhhh--hcCCCCeE
Q psy4881 219 LYGDGA-ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERA-------S---------ASVDYYT--RGDYIPGI 278 (423)
Q Consensus 219 ~~GDGa-~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~-------~---------~~~~~~~--~a~G~~~~ 278 (423)
++|||+ +++|. .+|.+|+++++|+++||.||+ ||+.+.++.. . ...++.+ +++|+.++
T Consensus 93 i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~v 170 (286)
T PRK11867 93 VTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFV 170 (286)
T ss_pred EeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEE
Confidence 999996 88874 349999999999999999888 5886643211 0 0135555 45566655
Q ss_pred -EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 279 -WVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 279 -~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
+..-.+++++.+++++|++ .+||+|||+.+.
T Consensus 171 a~~~~~~~~el~~al~~Al~----~~Gp~lIev~~~ 202 (286)
T PRK11867 171 ARGFDSDVKQLTELIKAAIN----HKGFSFVEILQP 202 (286)
T ss_pred EEecCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 2233379999999999884 689999999864
No 117
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.63 E-value=1.3e-15 Score=149.25 Aligned_cols=114 Identities=18% Similarity=0.067 Sum_probs=88.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccch-hhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc-------c--
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQ-GQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER-------A-- 262 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~-G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-------~-- 262 (423)
.+.||.|+++|+|+|+++|+++||+++|||++.+ | .++|.+|+++++|+++||.||+ ||+...++. .
T Consensus 59 ~~~mG~alp~AiGaklA~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~ 136 (280)
T PRK11869 59 HTLHGRAIPAATAVKATNPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTP 136 (280)
T ss_pred CcccccHHHHHHHHHHHCCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccc
Confidence 3558999999999999999999999999999764 3 2449999999999999999998 587543221 0
Q ss_pred -------cCCchhhh--hcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 263 -------SASVDYYT--RGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 263 -------~~~~~~~~--~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
....||.+ +++|++++.. +-.+++++.+++++|++ .+||+||||.+.
T Consensus 137 ~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 137 TQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred cCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 01246666 6779988762 12389999999999984 689999999874
No 118
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.63 E-value=4.3e-15 Score=161.27 Aligned_cols=191 Identities=20% Similarity=0.214 Sum_probs=161.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCC-----CEEEEEeCCCc-cchhhHHHHHHHhHhcCCC---EEEEEecCCccccccccc
Q psy4881 191 TNQLVTVPLGVGIALAAKYSGTK-----GVCFALYGDGA-ANQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGTSSER 261 (423)
Q Consensus 191 sg~~g~l~~A~GaA~a~k~~~~~-----~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~~~~~ 261 (423)
||.-...|+..|.+-|.+-...+ ...|.++||.+ .++|.+.|.||+...-+.- .+.||.||+.|..|....
T Consensus 298 SHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~ 377 (906)
T COG0567 298 SHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPAD 377 (906)
T ss_pred chhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCccc
Confidence 44444689999999998865433 34569999999 5899999999998876654 999999999999887332
Q ss_pred ccC---CchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHh
Q psy4881 262 ASA---SVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQ 338 (423)
Q Consensus 262 ~~~---~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~ 338 (423)
..+ ++|.+ +..++|.++|+|.|++++..+.+-|+++....+++++|++.+||.+||+++|.++ +..+..++..++
T Consensus 378 sRSt~Y~TDvA-Km~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~ 455 (906)
T COG0567 378 ARSTPYCTDVA-KMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKK 455 (906)
T ss_pred ccCCCCCCChh-hccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhc
Confidence 222 23333 5678999999999999999999999999999999999999999999999999985 889999999998
Q ss_pred cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy4881 339 TRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADP 383 (423)
Q Consensus 339 ~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p 383 (423)
+..+...|.++|+++|++++++.+++.+++++.++..+.......
T Consensus 456 h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~ 500 (906)
T COG0567 456 HPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK 500 (906)
T ss_pred CCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHH
Confidence 888999999999999999999999999999999988777665443
No 119
>KOG0450|consensus
Probab=99.63 E-value=8.1e-15 Score=153.45 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=161.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcC-----CCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCC---EEEEEecCCcccccccc-
Q psy4881 191 TNQLVTVPLGVGIALAAKYSG-----TKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGTSSE- 260 (423)
Q Consensus 191 sg~~g~l~~A~GaA~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~~~~- 260 (423)
|+.-+.=|+-+|--.|.++.. .+..-|.+.||++| ++|.++|.+.+...-+.- .|.||.||+.|+.+...
T Consensus 374 SHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~ 453 (1017)
T KOG0450|consen 374 SHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRF 453 (1017)
T ss_pred hhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCccc
Confidence 555566888889888887753 34557899999995 899999988875433332 89999999999977543
Q ss_pred -cccCCchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhc
Q psy4881 261 -RASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 339 (423)
Q Consensus 261 -~~~~~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~ 339 (423)
|.++-+.=.+++.++|.++|++.|+++|.-+.+-|.+.....++.++|++++||.+||++.|.|. +..|.+++.+++.
T Consensus 454 aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~ 532 (1017)
T KOG0450|consen 454 ARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKH 532 (1017)
T ss_pred ccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcC
Confidence 22221222337789999999999999999999999888778999999999999999999999985 9999999999988
Q ss_pred CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy4881 340 RDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADP 383 (423)
Q Consensus 340 ~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p 383 (423)
+..+..|.+.|+++|.++++++++..+.+..-.++|++.++...
T Consensus 533 ~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~ 576 (1017)
T KOG0450|consen 533 KPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYK 576 (1017)
T ss_pred CcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88999999999999999999999999999999999999988755
No 120
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.62 E-value=7.3e-15 Score=161.83 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=110.3
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcC-------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSG-------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~-------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+-.++|++|+ ++.|+|+|++.|+.. .+.+|+|++|||.+++|+.|||+.+|++++|. +++||++|...+..
T Consensus 184 ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG 263 (889)
T TIGR03186 184 WQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG 263 (889)
T ss_pred eEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence 5568999996 999999999988432 36889999999999999999999999999998 99999999998777
Q ss_pred ccccccC-Cchhhh--hcCCCCeEEe------------------------------------------------------
Q psy4881 258 SSERASA-SVDYYT--RGDYIPGIWV------------------------------------------------------ 280 (423)
Q Consensus 258 ~~~~~~~-~~~~~~--~a~G~~~~~V------------------------------------------------------ 280 (423)
++..... ..++.+ +++||..++|
T Consensus 264 ~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~ 343 (889)
T TIGR03186 264 PVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAA 343 (889)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHH
Confidence 6654221 234554 6889999998
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 281 ---------------DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 281 ---------------dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
+|||+.+|++|+++|.+ ..++|++|.++|.+++|-+.
T Consensus 344 lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PTvIla~TvkG~G~~~ 395 (889)
T TIGR03186 344 LVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPTVILAKTMKGFGMGA 395 (889)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCCc
Confidence 69999999999999885 24689999999999999644
No 121
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.62 E-value=8.5e-15 Score=159.81 Aligned_cols=130 Identities=18% Similarity=0.089 Sum_probs=111.0
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHh-------cCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKY-------SGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~-------~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+-.++|++|+ ++.|+|+|++.|+ ...+.+|+|++|||.+++|+.|||+.+|++++|. +++||++|...+..
T Consensus 184 ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG 263 (885)
T TIGR00759 184 WQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDG 263 (885)
T ss_pred EEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence 5678999996 9999999999997 5678899999999999999999999999999998 99999999988777
Q ss_pred ccccccC-Cchhhh--hcCCCCeEEe------------------------------------------------------
Q psy4881 258 SSERASA-SVDYYT--RGDYIPGIWV------------------------------------------------------ 280 (423)
Q Consensus 258 ~~~~~~~-~~~~~~--~a~G~~~~~V------------------------------------------------------ 280 (423)
++..... ..++.+ +++|+.+++|
T Consensus 264 ~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~ 343 (885)
T TIGR00759 264 PVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKA 343 (885)
T ss_pred ccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 6653221 234444 6889999998
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 281 ---------------DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 281 ---------------dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
+|||+.+|++|+++|.+ ..++|++|-++|.+++|.+
T Consensus 344 lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 344 LVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEEEEEeeeecCCCC
Confidence 59999999999988875 2358999999999999976
No 122
>KOG3461|consensus
Probab=99.61 E-value=1.8e-16 Score=133.02 Aligned_cols=67 Identities=48% Similarity=0.857 Sum_probs=61.7
Q ss_pred CCccccceeeccCCceeeeeEee-cCCcchhhhhhhcccCCCcccCCccccccccccCcccceeecCCC
Q psy4881 50 EPRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNT 117 (423)
Q Consensus 50 ~~~~~~n~~~~~~~~~~~~~~~~-d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d~~~ 117 (423)
+..+.+|+.|||+++++++.||+ |++ +|+++||||||++||+|||+|.++|++.|||+|||++..++
T Consensus 64 ~n~a~iN~hIqkd~pKIVd~~d~eDl~-~ka~yCrCWrs~kfP~CDGsh~KhNk~tgdNvgpliikk~~ 131 (132)
T KOG3461|consen 64 QNKARINLHIQKDNPKIVDAFDMEDLG-DKAAYCRCWRSKKFPLCDGSHGKHNKETGDNVGPLIIKKKE 131 (132)
T ss_pred ccCccccceeecCCCceeEEEehhhhc-ccceEEEeeccCCcccccCcccccccccccccccceeeecc
Confidence 45788999999999999999999 666 88899999999999999999999999999999999986654
No 123
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.61 E-value=6.8e-15 Score=144.70 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=88.2
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccccc----
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERAS---- 263 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~---- 263 (423)
+++..+.||.|+++|+|+|+++|+++||+++|||++ .+|. ..|.+|+++++||++||.||+ ||+.+.++...
T Consensus 48 ~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G 125 (287)
T TIGR02177 48 VNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKG 125 (287)
T ss_pred cCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCC
Confidence 334345689999999999999999999999999996 4763 449999999999999999998 58876443200
Q ss_pred --------------CCchhhhhcCC--CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 --------------ASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 --------------~~~~~~~~a~G--~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.++++.+.|.| ..+... ..+++++.+++++|++ .+||+||||.+.
T Consensus 126 ~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~-~~~~~eL~~ai~~Al~----~~GpslIeV~~p 186 (287)
T TIGR02177 126 VKTKSLPYPNIQDPVNPLLLAIALGYTFVARGF-SGDVAHLKEIIKEAIN----HKGYALVDILQP 186 (287)
T ss_pred cceeecccCccCCCCCHHHHHHhCCCCeEEEEe-cCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 02345555544 333432 2489999999999984 689999999864
No 124
>KOG0523|consensus
Probab=99.60 E-value=5e-15 Score=154.03 Aligned_cols=126 Identities=24% Similarity=0.326 Sum_probs=107.1
Q ss_pred ecCCCCCC-cHHHHHHHHHHHhcCC-CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcccccccccccCC
Q psy4881 189 TVTNQLVT-VPLGVGIALAAKYSGT-KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 189 ~~sg~~g~-l~~A~GaA~a~k~~~~-~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
.++|.+|| ++.|+|+|++.|+.+. +..|+|++|||++++|..|||+++|+.|+|. +|+|..||+.+++......+.
T Consensus 115 v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~- 193 (632)
T KOG0523|consen 115 VATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFD- 193 (632)
T ss_pred eccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccccc-
Confidence 45677886 9999999999999888 9999999999999999999999999999999 555555777898877664443
Q ss_pred chhhh---hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCC
Q psy4881 266 VDYYT---RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 318 (423)
Q Consensus 266 ~~~~~---~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH 318 (423)
.+.++ .++|+....|||+|++++.+++.+|.. .-++|++|-+.|+.++|-
T Consensus 194 ~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t~~g~G~ 246 (632)
T KOG0523|consen 194 EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATTFIGRGS 246 (632)
T ss_pred ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeeeeeecCc
Confidence 34444 578999999999999999999999873 357899999999998883
No 125
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.57 E-value=3.1e-14 Score=139.66 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=89.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCC-ccchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccccC-------
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDG-AANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERASA------- 264 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~~------- 264 (423)
.+.||.|+++|+|+|+++|+++||+++||| ++.+|. .+|.+|+++++|+++||.||+ ||+...++....
T Consensus 58 ~~~~G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~ 135 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANPKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTK 135 (279)
T ss_pred ccccccHHHHHHHHHHHCCCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceee
Confidence 567888999999999999999999999999 688874 459999999999999999998 488763321110
Q ss_pred -----C----chhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 265 -----S----VDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 265 -----~----~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
. .++.+ +++|++.+ +....+++++.+++++|++ .+||+|||+...
T Consensus 136 ~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~p 192 (279)
T PRK11866 136 TTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLSP 192 (279)
T ss_pred ccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 1 26666 67788765 3444689999999999884 689999999864
No 126
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.54 E-value=2.9e-14 Score=135.27 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=88.9
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhH---HHHHHHhHhcCCC-EEEEEecCCccccccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQV---FEVYNIAKLWNIP-CIFVCENNGYGMGTSSER 261 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~---~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~ 261 (423)
+...+|.+|+ ++.|+|+| +.+++.+|+|++|||++++|.+ ||+..++..+++. |+.|+.||+|+|+.+...
T Consensus 57 i~~~~G~LG~gLs~A~G~a----~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~ 132 (227)
T cd02011 57 SIHEGGELGYSLSHAYGAV----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTIL 132 (227)
T ss_pred eeecccchhhHHHHHHHhh----hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccc
Confidence 4445666653 66666665 5689999999999999999996 8888888888888 888889999999998875
Q ss_pred c-cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHh
Q psy4881 262 A-SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 262 ~-~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~a 299 (423)
. .+..++.+ ++||++.+.|||+|++++.+++++|++++
T Consensus 133 ~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~ 173 (227)
T cd02011 133 ARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWA 173 (227)
T ss_pred cccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHH
Confidence 4 33456666 57899999999999999999998888744
No 127
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.53 E-value=1.4e-13 Score=152.44 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=109.9
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHh-------cCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKY-------SGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~-------~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+-.++|++|+ ++.|+|+|++.|+ ...+++|+||+|||.+++|+.|||+.+|++++|. +++||++|...+..
T Consensus 198 ~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG 277 (896)
T PRK13012 198 WQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDG 277 (896)
T ss_pred EecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccC
Confidence 5568899996 9999999999883 4567899999999999999999999999999998 99999999987777
Q ss_pred ccccccC-Cchhhh--hcCCCCeEEe--------------------------e---------------------------
Q psy4881 258 SSERASA-SVDYYT--RGDYIPGIWV--------------------------D--------------------------- 281 (423)
Q Consensus 258 ~~~~~~~-~~~~~~--~a~G~~~~~V--------------------------d--------------------------- 281 (423)
++..... ..++.+ +++|+..+.| |
T Consensus 278 ~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~ 357 (896)
T PRK13012 278 PVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAA 357 (896)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 6653222 234444 6889999999 8
Q ss_pred ----------------CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 282 ----------------GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 282 ----------------G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
|||+.+|++|+++|.+ ..++|++|-++|.+++|-+
T Consensus 358 lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 358 LVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCC
Confidence 9999999999998874 2458999999999999965
No 128
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=141.46 Aligned_cols=269 Identities=14% Similarity=0.120 Sum_probs=159.3
Q ss_pred ccccCCCCCccccccCCCCCCCCccc-ccCCCccccceeeccCCcee--eeeEe-ecCCcchhhhhhhcccCCCcccCCc
Q psy4881 21 TCYPVEDTTEKVFGPLDYENIPSEEF-WGTEPRRLINKYYSKHHDVV--TDRFT-IDTGIHTEAICRCWKSKKFPFCDNS 96 (423)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~--~~~~~-~d~~~~~~~~c~~~rs~~~p~cdg~ 96 (423)
|.||.- ++|+=+|.+++++|.+.++ +|+-...-+--.++..|.++ +..|. ..-+ .+ +..++..+.+
T Consensus 236 t~~p~~-~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg----~F-----t~~~~~~~~i 305 (557)
T COG3961 236 TGFPVA-TLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTG----GF-----TYQYKPANII 305 (557)
T ss_pred cCCCeE-EeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeecccc----ce-----eeecCcccEE
Confidence 445543 4788899999999988774 55544444444455555554 22333 2111 11 1112234455
Q ss_pred cccccc-cccCcc-cceeecCCCccchhhcccCCCc---------cccc--cccCCCCCCCHHHHHHHHHhhc-cCCeEE
Q psy4881 97 HKYHNK-FHKDNV-GPLIIDGNTFPDYVLDKYTLPT---------PNRS--ITYPTPSTMSDSQVDKAIDKYV-KENEYS 162 (423)
Q Consensus 97 H~~~~~-~~g~nv-gpl~~d~~~vl~~~l~~~~~~~---------~~r~--~~~~~~~~~~p~~vi~~l~~~~-~~~~~~ 162 (423)
|+..+. .+.+-. .+| ..+.+|+.+..+..... .-+. .......+++.+.+.+.+..++ +++++.
T Consensus 306 ~~~~~~v~I~~~~f~~l--~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dvii 383 (557)
T COG3961 306 EIHPDSVKIKDAVFTNL--SMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVII 383 (557)
T ss_pred EeccCeeEecccccCCe--eHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEE
Confidence 554433 122222 232 23344444433321111 0111 1123446699999999999998 568888
Q ss_pred eCCCCccccccccccccccccCCe-eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcC
Q psy4881 163 QDSDENMTNQLVTVTNQLVTVTNQ-LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWN 241 (423)
Q Consensus 163 ~d~g~~~~~~~~~~~~~~~~~~~~-~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~ 241 (423)
+|.|.... ...... .+.+ .+.+=...|++|+++|+|+|+.++.+++++|.|+||||+++- ++| +.+..+|+
T Consensus 384 aetGtS~F---G~~~~~---lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlT-vQE-iStmiR~g 455 (557)
T COG3961 384 AETGTSFF---GALDIR---LPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLT-VQE-ISTMIRWG 455 (557)
T ss_pred Eccccccc---cceeee---cCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhh-HHH-HHHHHHcC
Confidence 88665322 111111 1222 222334458899999999999999999999999999999983 455 99999999
Q ss_pred CC-EEEEEecCCccccccccccc--C----Cchhhh--hcCCCCe----EEeeCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 242 IP-CIFVCENNGYGMGTSSERAS--A----SVDYYT--RGDYIPG----IWVDGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 242 LP-vi~Vv~NN~~gi~~~~~~~~--~----~~~~~~--~a~G~~~----~~VdG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
|| +|||++|++|.|.+...... . +=+|.+ +++|... .++. ..+++..+++.+.+ ..+++.||
T Consensus 456 l~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~--~~~~l~~~~~~~~~---~~~~i~lI 530 (557)
T COG3961 456 LKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRAT--TGEELALALDVAFA---NNDRIRLI 530 (557)
T ss_pred CCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCCCceEEEeec--ChHHHHHHHHHHhc---CCCceEEE
Confidence 98 77777777887765443311 0 123333 5665432 3454 56677777777764 46789999
Q ss_pred EEEEec
Q psy4881 309 ETATYR 314 (423)
Q Consensus 309 ev~t~R 314 (423)
||++.+
T Consensus 531 Ev~lp~ 536 (557)
T COG3961 531 EVMLPV 536 (557)
T ss_pred EEecCc
Confidence 999855
No 129
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.52 E-value=7.2e-13 Score=130.85 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=117.5
Q ss_pred CCCcHHHHHHHHHHHhcCCC-CEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccC--------
Q psy4881 194 LVTVPLGVGIALAAKYSGTK-GVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASA-------- 264 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~-~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~-------- 264 (423)
+.+.++|.|+++|.+..+++ ..|++++|||++..+.+ |+|+.|+.+++|+++||+||++.+.+-.|....
T Consensus 72 G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~ 150 (300)
T PRK11864 72 AATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTT 150 (300)
T ss_pred hChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccc
Confidence 45799999999999887654 45666999999877665 999999999999999999999855444443221
Q ss_pred ---------Cchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCC-------
Q psy4881 265 ---------SVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT------- 325 (423)
Q Consensus 265 ---------~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~------- 325 (423)
..|+.. .++|++.+ +++-.++.++.+++++|++ .+||.+|++.+.=..++...+..+
T Consensus 151 tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~~~~~~~~~~~~k~A 226 (300)
T PRK11864 151 TTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGWRFDPDKTIEIARLA 226 (300)
T ss_pred cCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCCCcChHHHHHHHHHH
Confidence 112222 56787665 7787899999999999984 689999999865433332111110
Q ss_pred -------CcC-----------ChhHHHHHHhcCChHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4881 326 -------SYR-----------TRDEIQEVRQTRDPISSLKDKILNA---SLVTPEELKKIDTEVKAEIDAVIKKA 379 (423)
Q Consensus 326 -------~YR-----------~~~e~~~~~~~~DPi~~~~~~L~~~---g~~~~~~~~~i~~e~~~~v~~a~~~A 379 (423)
.|| ++...+ .+.+-|+ +++|..+ ..+.+|+++++++++.++.+.-...|
T Consensus 227 v~tg~wplye~~~g~~~~~~~~~~~~~--~~~~~pv---~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~ 296 (300)
T PRK11864 227 VETGVWPLFEYENGKFKLNSPSKTLLD--KKKRKPV---EEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLA 296 (300)
T ss_pred HHcCCceEEEEECCEEEEccCCccccc--cccCCCH---HHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 110000 0112344 4445433 45678999999988888877654443
No 130
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.49 E-value=1.7e-13 Score=138.95 Aligned_cols=257 Identities=13% Similarity=0.033 Sum_probs=167.7
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCCcccCCcccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~ 101 (423)
..|.|| ||=+|.++--|.+++|-...++|.++-++.| +..=....+..+ .+|..+-.-+.+.
T Consensus 269 al~~dh--plNlG~vGvTGt~AAN~~A~~ADlVigiGTR---------~~DFTTgS~alF-------~~~~~k~l~lNV~ 330 (617)
T COG3962 269 ALAWDH--PLNLGGVGVTGTLAANRAAEEADLVIGIGTR---------LQDFTTGSKALF-------KNPGVKFLNLNVQ 330 (617)
T ss_pred cccccC--ccccccccccchHHHHhhhhhcCEEEEeccc---------ccccccccHHHh-------cCCCceEEEeecc
Confidence 578889 9999999999999999999999988888877 542000011111 1122222233233
Q ss_pred c-cccCcc-cceeecCCCccchh---hcccCCCccccc-------ccc---------CC--CCCCCHHHHHHHHHhhccC
Q psy4881 102 K-FHKDNV-GPLIIDGNTFPDYV---LDKYTLPTPNRS-------ITY---------PT--PSTMSDSQVDKAIDKYVKE 158 (423)
Q Consensus 102 ~-~~g~nv-gpl~~d~~~vl~~~---l~~~~~~~~~r~-------~~~---------~~--~~~~~p~~vi~~l~~~~~~ 158 (423)
+ ..++.- .||+.|++..+..+ |..+.....|.. .|. .+ +....--+|+-++++..++
T Consensus 331 ~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~~vigav~~~~~~ 410 (617)
T COG3962 331 PFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGAVQRTISD 410 (617)
T ss_pred cccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccchhHHHHHHhhcCC
Confidence 3 122222 49999999876554 444433333321 121 11 1234445788888888765
Q ss_pred -CeEEeCCCC------ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 159 -NEYSQDSDE------NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 159 -~~~~~d~g~------~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+++++-.|+ ..| ... .+++++. --+...||+-+-.++|+|++.|++.|++++||||+.| .+
T Consensus 411 ~svvvcAAGsLPGdLhkLW---~~~------~p~~YH~-EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDGSymM--ln 478 (617)
T COG3962 411 DSVVVCAAGSLPGDLHKLW---RAG------VPGTYHL-EYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYMM--LN 478 (617)
T ss_pred CcEEEEeCCCCcHHHHHHh---ccC------CCCceee-eecccccccccccccccccCCCCCeEEEEEcccchhh--hh
Confidence 555544332 233 111 1222331 2235679999999999999999999999999999887 35
Q ss_pred HHHHHhHhcCCCEEEEEecCC-cccccccccc------------------cCCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNG-YGMGTSSERA------------------SASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~------------------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
.+|.|+..+++.|++|+.+|. ||-.-+.|.. ....||++ ++||+..++|. ++++|.+
T Consensus 479 SEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~a 556 (617)
T COG3962 479 SELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEA 556 (617)
T ss_pred HHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHH
Confidence 569999999999999999886 6544433311 12357777 67899999997 8999888
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
|+++|. +..+++||++.|..
T Consensus 557 AL~~Ak----~~~~ttvi~I~t~P 576 (617)
T COG3962 557 ALADAK----ASDRTTVIVIDTDP 576 (617)
T ss_pred HHHHHH----hCCCCEEEEEecCC
Confidence 777766 68999999999864
No 131
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.48 E-value=2.4e-13 Score=146.86 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=106.3
Q ss_pred HHHHHHHhhccCC-eEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 147 QVDKAIDKYVKEN-EYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 147 ~vi~~l~~~~~~~-~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
.++.+|++.++++ +++.|.| ..+|. .. + ..+. ...++||+++++|+|++++.++++||+++|||+
T Consensus 366 ~~~~~l~~~l~~d~ivv~D~G~~~~~~--~~---p-----~~~~---~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~ 432 (595)
T TIGR03336 366 ATFYAMKKVADREAIFPSDIGCYTLGI--QP---P-----LGTV---DTTLCMGASIGVASGLSKAGEKQRIVAFIGDST 432 (595)
T ss_pred HHHHHHHHhccCCcEEecCcchhhccc--cC---C-----cccc---ceeeccCchHHHHhhhhhcCCCCCEEEEeccch
Confidence 4678899998754 6677744 33441 10 1 1112 124679999999999999999999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccccc----------CCchhhh--hcCCCCeEEeeC-CCHHHHHH
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERAS----------ASVDYYT--RGDYIPGIWVDG-MDILAVRE 290 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~----------~~~~~~~--~a~G~~~~~VdG-~d~~~v~~ 290 (423)
|.+... .+|.+|+++++|+++||.||+ ||+...++... ..+||.+ +++|+++.+|.. .+.+++.+
T Consensus 433 f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~ 511 (595)
T TIGR03336 433 FFHTGI-PGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIE 511 (595)
T ss_pred hhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHH
Confidence 987323 349999999999999999887 58765432110 2357776 788999998863 24466678
Q ss_pred HHHHHHHHhhCCCCcEEEEEEE
Q psy4881 291 AARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t 312 (423)
++++|++ .+||++|++..
T Consensus 512 al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 512 VFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred HHHHHHh----cCCCEEEEEcc
Confidence 8888774 68999999965
No 132
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.47 E-value=8e-13 Score=145.91 Aligned_cols=129 Identities=21% Similarity=0.167 Sum_probs=107.6
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHh-------cCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKY-------SGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~-------~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+.+++|++|+ .+.|+|+|++.|+ ...+++|+|++|||.+++|+.|||+.+|++++|. +++||++|...+..
T Consensus 190 ~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG 269 (891)
T PRK09405 190 WQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDG 269 (891)
T ss_pred eecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCC
Confidence 4456777875 8899999999983 4568899999999999999999999999999998 99999999988777
Q ss_pred ccccccC-Cchhhh--hcCCCCeEEe--------------------------e---------------------------
Q psy4881 258 SSERASA-SVDYYT--RGDYIPGIWV--------------------------D--------------------------- 281 (423)
Q Consensus 258 ~~~~~~~-~~~~~~--~a~G~~~~~V--------------------------d--------------------------- 281 (423)
++..... ..++.+ +++||..+.| |
T Consensus 270 ~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~ 349 (891)
T PRK09405 270 PVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKA 349 (891)
T ss_pred ccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHH
Confidence 6653211 234444 6889999999 4
Q ss_pred ----------------CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCC
Q psy4881 282 ----------------GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 318 (423)
Q Consensus 282 ----------------G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH 318 (423)
|||+.+|++|+++|.+ ..++|++|-++|.+++|.
T Consensus 350 lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 350 LVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQPTVILAKTIKGYGM 399 (891)
T ss_pred HHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCCEEEEEeceecCCC
Confidence 9999999999998875 246899999999999997
No 133
>PRK05261 putative phosphoketolase; Provisional
Probab=99.32 E-value=9e-12 Score=136.15 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhH---HHHHHHhHhcCCC-EEEEEecCCccccccccccc-CCchhhh-
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQV---FEVYNIAKLWNIP-CIFVCENNGYGMGTSSERAS-ASVDYYT- 270 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~---~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~~-~~~~~~~- 270 (423)
+|.+++.|+|+++++++.+|+|++|||++++|.+ |++.+++..+++. |+.|+.+|+|+|+.+..... ...++.+
T Consensus 144 LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~r 223 (785)
T PRK05261 144 LGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEAL 223 (785)
T ss_pred hhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHH
Confidence 4444444444446688999999999999999974 7777777777777 78888899999999887543 3355666
Q ss_pred -hcCCCCeEEeeCCCHHHHHHHHHHHHH-----------HhhCC---CCcE--EEEEEEecCCC
Q psy4881 271 -RGDYIPGIWVDGMDILAVREAARFAVN-----------HCRSD---KGPI--LLETATYRYSG 317 (423)
Q Consensus 271 -~a~G~~~~~VdG~d~~~v~~al~~A~~-----------~ar~~---~gP~--lIev~t~R~~g 317 (423)
++||++.+.|||+|++++.+++++|++ .||.+ .+|+ +|.++|.++.|
T Consensus 224 f~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g 287 (785)
T PRK05261 224 FRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWT 287 (785)
T ss_pred HHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCC
Confidence 688999999999999999888666654 44545 5899 99999999877
No 134
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.11 E-value=6.8e-09 Score=102.82 Aligned_cols=213 Identities=14% Similarity=0.082 Sum_probs=128.5
Q ss_pred HHHHHHHhhccC-CeEEeCCCCcc-ccccccccccccccCCeeeecCCCC-CCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 147 QVDKAIDKYVKE-NEYSQDSDENM-TNQLVTVTNQLVTVTNQLVTVTNQL-VTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 147 ~vi~~l~~~~~~-~~~~~d~g~~~-~~~~~~~~~~~~~~~~~~~~~sg~~-g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
-+++.+.+++.+ .+++.+.|-.. +...+. +.+ + + .....+.. .+.++|.|++.|.+..+++..||++.|||
T Consensus 28 ~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~p-~~~-~---~-~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG 101 (299)
T PRK11865 28 IAMRLALKALGKNTVIVVATGCLEVITTPYP-ETA-W---N-VPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDG 101 (299)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccccCccCc-CCc-c---c-cccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 456677777754 45666644322 211110 001 1 1 11122333 46999999999988777788999999999
Q ss_pred cc-chhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccc----------c-----------CCchhhh--hcCCCCeE
Q psy4881 224 AA-NQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERA----------S-----------ASVDYYT--RGDYIPGI 278 (423)
Q Consensus 224 a~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~----------~-----------~~~~~~~--~a~G~~~~ 278 (423)
++ ..| +++|..|...+.++++||.||+. ++..-+... + ...|+.. .++|++.+
T Consensus 102 ~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YV 179 (299)
T PRK11865 102 GTADIG--FQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYV 179 (299)
T ss_pred hHhhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEE
Confidence 96 555 47899999999999999999995 553322110 0 0123333 45677765
Q ss_pred -EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec--CCCCCCCCCC--------C----CcC-ChhHHHHHHhcCCh
Q psy4881 279 -WVDGMDILAVREAARFAVNHCRSDKGPILLETATYR--YSGHSMSDPG--------T----SYR-TRDEIQEVRQTRDP 342 (423)
Q Consensus 279 -~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R--~~gH~~~D~~--------~----~YR-~~~e~~~~~~~~DP 342 (423)
+++-.++.++.+++++|++ .+||.||++...= +.+|..++.. + .|| .+..++ ..++|
T Consensus 180 A~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~---~~~~~ 252 (299)
T PRK11865 180 ATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFK---ITYEP 252 (299)
T ss_pred EEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeec---cCCCc
Confidence 6666699999999999984 6899999998643 3333322110 0 011 000000 01122
Q ss_pred H-------HHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHH
Q psy4881 343 I-------SSLKDKILNA---SLVTPEELKKIDTEVKAEIDA 374 (423)
Q Consensus 343 i-------~~~~~~L~~~---g~~~~~~~~~i~~e~~~~v~~ 374 (423)
. .-++++|..+ ..+++++++++++++.++.+.
T Consensus 253 ~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~~~~~~ 294 (299)
T PRK11865 253 LHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYIDEKWKE 294 (299)
T ss_pred ccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHHHHHHHH
Confidence 2 2456666654 356788888888887777654
No 135
>KOG1184|consensus
Probab=98.84 E-value=4.2e-08 Score=101.41 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHhhcc-CCeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEE
Q psy4881 141 STMSDSQVDKAIDKYVK-ENEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFA 218 (423)
Q Consensus 141 ~~~~p~~vi~~l~~~~~-~~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~ 218 (423)
..++-..+...++..+. .+++.+..| .+.. ......+.- - ...+-...|++++.+|+++|...+.++++|+.
T Consensus 365 ~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~--~~~~~fP~g---~-~~~~q~~wgsIG~svga~lG~a~a~~e~rvil 438 (561)
T KOG1184|consen 365 APLRQEWMWNHIQKFLSSGDVVIAETGDSWFG--INQTKFPKG---C-GYESQMQWGSIGWSVGATLGYAQAAPEKRVIL 438 (561)
T ss_pred chhhHHHHHHHHHhhcCCCceEEEecccceec--ceeeccccc---c-ceEEEEEEeeccccchhhhhhhhccCCceEEE
Confidence 34677788888998885 466655533 2221 111001100 0 11111224566666666666666688999999
Q ss_pred EeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcccccccccccC----Cchhhh--hcCC-----CCeEEeeCCCHH
Q psy4881 219 LYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGTSSERASA----SVDYYT--RGDY-----IPGIWVDGMDIL 286 (423)
Q Consensus 219 ~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~~~----~~~~~~--~a~G-----~~~~~VdG~d~~ 286 (423)
|+|||++++- +.| +.++.+|+|| ++|+++|++|-|.+....... +=+|.+ +++| ....++- .-.
T Consensus 439 fiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~ 514 (561)
T KOG1184|consen 439 FIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYNDIQNWDYTALLEAFGAGEGKYETHKVR--TEE 514 (561)
T ss_pred EecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccccccchHHHHHHhhcCccceeEEeeec--cch
Confidence 9999999984 455 9999999999 556666666866543332111 234444 4554 2234443 345
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 287 AVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 287 ~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
++.++++.+... +.+++.||||+..
T Consensus 515 e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 515 ELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred HHHHHHhhhhhc--ccCceEEEEEecC
Confidence 777777777632 5678999999873
No 136
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.11 E-value=5.3e-05 Score=81.21 Aligned_cols=106 Identities=21% Similarity=0.153 Sum_probs=76.4
Q ss_pred CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcccccccccc---------------------------
Q psy4881 211 GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGTSSERA--------------------------- 262 (423)
Q Consensus 211 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~--------------------------- 262 (423)
.++.+|+||.|||.|-+++..+++..|++++|. ++|||+-|.-....++..-
T Consensus 219 ~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~w 298 (887)
T COG2609 219 TSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRW 298 (887)
T ss_pred CCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccH
Confidence 368899999999999999999999999999999 9999998865443333100
Q ss_pred ------------------cCCchhhh-h----------cCC----------------CCeEEeeCCCHHHHHHHHHHHHH
Q psy4881 263 ------------------SASVDYYT-R----------GDY----------------IPGIWVDGMDILAVREAARFAVN 297 (423)
Q Consensus 263 ------------------~~~~~~~~-~----------a~G----------------~~~~~VdG~d~~~v~~al~~A~~ 297 (423)
....+|.. + -|| +....--|||+..+++|+++|.+
T Consensus 299 d~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~ 378 (887)
T COG2609 299 DELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQE 378 (887)
T ss_pred HHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhc
Confidence 00111211 0 111 01123359999999999999985
Q ss_pred HhhCCCCcEEEEEEEecCCCCC
Q psy4881 298 HCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 298 ~ar~~~gP~lIev~t~R~~gH~ 319 (423)
. .++|++|-..|.+++|-.
T Consensus 379 ~---kg~PtvilA~TIKGyglg 397 (887)
T COG2609 379 H---KGRPTVILAKTIKGYGLG 397 (887)
T ss_pred C---CCCceEEEEeeeccccCc
Confidence 2 348999999999988864
No 137
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.06 E-value=7.1e-05 Score=74.39 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCc-cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccccccC---------
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGA-ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSERASA--------- 264 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~~~~--------- 264 (423)
+.++|.|+.+| .++..||++.|||. +..|. ..|-.|.+.+.+|++||.||+ ||+..-+. ..+
T Consensus 75 a~a~atGik~A----~~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~-S~tTp~G~~t~t 147 (294)
T COG1013 75 AAAVATGIKLA----NPALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQA-SPTTPKGAKTKT 147 (294)
T ss_pred chhhHHHHHHh----ccCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCcc-CCCCCCCceeee
Confidence 56777776666 66889999999995 66763 448889999999999999999 46643221 110
Q ss_pred ---Cc------hhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 265 ---SV------DYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 265 ---~~------~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.. +... .++|...+ ++.--++.++.+.+++|++ .+||.||++.+.
T Consensus 148 ~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~sP 204 (294)
T COG1013 148 TPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLSP 204 (294)
T ss_pred cCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEecC
Confidence 00 1121 34576554 5554579999999999985 579999999864
No 138
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=98.02 E-value=1.9e-06 Score=59.26 Aligned_cols=34 Identities=47% Similarity=0.990 Sum_probs=27.9
Q ss_pred eeeEeecCCcchhhhhhhcccCCCcccCCcccccc
Q psy4881 67 TDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101 (423)
Q Consensus 67 ~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~ 101 (423)
+..|.++.. .++++|+|++|+++|+|||+|...+
T Consensus 3 P~~~~~e~~-~~~~lC~C~~S~~~PfCDGsH~~~~ 36 (38)
T smart00704 3 PDEVEVEKR-EKYALCRCGRSKNFPYCDGSHKKHN 36 (38)
T ss_pred CEEEEecCC-CEEEEeeCCCCCCCCccCCcccCcC
Confidence 456777554 6779999999999999999998553
No 139
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.79 E-value=0.00019 Score=72.29 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-----EEEEEecCCcccccccc--cccCCc
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-----CIFVCENNGYGMGTSSE--RASASV 266 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-----vi~Vv~NN~~gi~~~~~--~~~~~~ 266 (423)
+|-+|+++-.|+|+-+.+||.+|+|++|||.+..|.. .+-..+..+=-| |+=|+-=|+|-|+.++- +. +..
T Consensus 139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaETGpl-A~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTil~r~-~~~ 216 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPL-AASWHSNKFLNPATDGAVLPILHLNGYKISNPTILARM-SDE 216 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHH-HHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS--HH
T ss_pred CcchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcc-cccccccceeCcccCceeeceEEecCccccCCeEeeec-CHH
Confidence 3569999999999999999999999999999998852 111112222112 55566668998876542 22 123
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHH
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAV 296 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~ 296 (423)
.+.+ +++|..-+.|+|.|+.++...+..++
T Consensus 217 eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 217 ELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp HHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 3444 67899999999999988876554443
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.74 E-value=8.3e-05 Score=79.34 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccC----------
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASA---------- 264 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~---------- 264 (423)
||.++|.|-|..++.+ +++|+++|||.| ..|. .+|..|+..+.+++++|.+|.+ +|...+..-..
T Consensus 430 mGssig~a~g~~~~~~-k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~ 506 (640)
T COG4231 430 MGSSIGIAGGLSFAST-KKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKST 506 (640)
T ss_pred ccchhhhccccccccC-CceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccc
Confidence 4444444444444444 889999999996 5554 5699999999999999999998 88665432110
Q ss_pred Cchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 265 SVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 265 ~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
...... |+.|+..+ .||=.|..++.+++++|+ +..||.+|-.
T Consensus 507 ~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keal----e~~gpsViia 551 (640)
T COG4231 507 AIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEAL----EVPGPSVIIA 551 (640)
T ss_pred eeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHh----cCCCceEEEE
Confidence 111111 67787665 455578888888888888 5788988854
No 141
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=97.59 E-value=5.1e-05 Score=79.28 Aligned_cols=113 Identities=7% Similarity=-0.019 Sum_probs=72.7
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccCC-Cccccccc----------c---CCCCCCCHHHHHHHHH
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL-PTPNRSIT----------Y---PTPSTMSDSQVDKAID 153 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~-~~~~r~~~----------~---~~~~~~~p~~vi~~l~ 153 (423)
.+..+|+++|+ +.+++. ..|++|++.+++.++..... ..+|+..| . ..+.+++|++++++++
T Consensus 298 ~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~ 377 (432)
T TIGR00173 298 PAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALREVLAEEPLSELSLARALS 377 (432)
T ss_pred CCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 35678999999 566654 57899999998776554322 12343222 0 1234589999999999
Q ss_pred hhccCC-eEEeCCCC-ccc-cccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHh
Q psy4881 154 KYVKEN-EYSQDSDE-NMT-NQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKY 209 (423)
Q Consensus 154 ~~~~~~-~~~~d~g~-~~~-~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~ 209 (423)
+.++++ +++.|.|. ..| .+|. .....++.++ +++++|+|+.++++|+|+++
T Consensus 378 ~~lp~d~ivv~d~g~~~~~~~~~~----~~~~~~~~~~-~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 378 QLLPEGAALFVGNSMPIRDLDTFA----QPPDKPIRVF-ANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred HhCCCCCeEEEECCHHHHHHHhcC----CcCCCCceEE-ecCchhhHHHHHHHHHHhhc
Confidence 999764 67778554 334 2222 1111223344 66778889999999998875
No 142
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.55 E-value=0.00025 Score=74.82 Aligned_cols=112 Identities=23% Similarity=0.131 Sum_probs=76.9
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEE-ecCCcccccccc--------
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVC-ENNGYGMGTSSE-------- 260 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv-~NN~~gi~~~~~-------- 260 (423)
.+|--|.++-|+|++.|. .+++|.++||=|+-.-. -+|........|+++|+ +||+-||-....
T Consensus 421 A~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~f 493 (566)
T COG1165 421 ASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVF 493 (566)
T ss_pred ccccchhHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchH
Confidence 355557899999999974 46799999999964321 22556777788855555 555556643221
Q ss_pred -ccc---CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 261 -RAS---ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 261 -~~~---~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+.. ..-||.. +.||+.+.+++ ...++..++..+. ...|-.+||++|.|
T Consensus 494 e~~F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~----~~~g~~viEvkt~r 547 (566)
T COG1165 494 ERLFGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAW----RRSGTTVIEVKTDR 547 (566)
T ss_pred HHhcCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhc----cCCCcEEEEEecCh
Confidence 111 1346655 56788888887 6788888887776 34679999999977
No 143
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.32 E-value=0.0016 Score=66.23 Aligned_cols=94 Identities=14% Similarity=0.022 Sum_probs=64.6
Q ss_pred CEEEEEeCCCc-cchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccc-------cccc---------CCchhhh--hcC
Q psy4881 214 GVCFALYGDGA-ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSS-------ERAS---------ASVDYYT--RGD 273 (423)
Q Consensus 214 ~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~-------~~~~---------~~~~~~~--~a~ 273 (423)
..||++.|||. ...|. ..|..|...+.+|++||.||. |++..-+ ...+ ...|... .++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 58999999996 56663 457778888999999999998 4653211 1110 0112222 345
Q ss_pred CCCeE-Eee-CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 274 YIPGI-WVD-GMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 274 G~~~~-~Vd-G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
|.+.+ ++. |.++.++.+++++|. +.+||.||++.+.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~----~~~Gps~I~v~sP 267 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAE----AYDGPSLIIAYSP 267 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHh----cCCCCEEEEEEcc
Confidence 76654 443 348999999999998 4699999999874
No 144
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=97.00 E-value=0.00013 Score=50.20 Aligned_cols=22 Identities=68% Similarity=1.150 Sum_probs=15.1
Q ss_pred chhhhhhhcccCCCcccCCccc
Q psy4881 77 HTEAICRCWKSKKFPFCDNSHK 98 (423)
Q Consensus 77 ~~~~~c~~~rs~~~p~cdg~H~ 98 (423)
.++++|+|++|++.|+|||+|.
T Consensus 17 ~~~~lC~Cg~S~~~PfCDGsH~ 38 (38)
T PF09360_consen 17 GTYALCRCGKSKNKPFCDGSHK 38 (38)
T ss_dssp SEEEE-SSS--TTTTB--SHHH
T ss_pred CEEEEecCCCCCCCCccCCcCC
Confidence 5679999999999999999993
No 145
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.75 E-value=0.0043 Score=71.66 Aligned_cols=110 Identities=13% Similarity=-0.015 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccc--cCCchhhh-
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERA--SASVDYYT- 270 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~--~~~~~~~~- 270 (423)
+||...+.++|......+++||+++|||.+ ..|. -+|..|...+.+++++|.+|.. +|...+..- .+.+++.+
T Consensus 482 ~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~~~~i~~~ 559 (1165)
T PRK09193 482 QMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLSVPQITRQ 559 (1165)
T ss_pred ccCCcchhhceeccccCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcchhhHHHH
Confidence 355554445554433556889999999995 5664 4699999999999999999998 886654321 12344544
Q ss_pred -hcCCCCeEEeeCCCHHHHH-----------------HHHHHHHHHhhCCCCcEEEEE
Q psy4881 271 -RGDYIPGIWVDGMDILAVR-----------------EAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 271 -~a~G~~~~~VdG~d~~~v~-----------------~al~~A~~~ar~~~gP~lIev 310 (423)
++.|+.-+.|-..|+.... +++++++ |+.+|+++|-.
T Consensus 560 ~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~ 614 (1165)
T PRK09193 560 LAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIY 614 (1165)
T ss_pred HHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 6788877655333555553 3444444 36778877754
No 146
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.73 E-value=0.018 Score=50.66 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEe-CCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhhhc
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALY-GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYTRG 272 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~~a 272 (423)
+...+|.|++.+ +. ..++... |-|..+. .+.|..|...++|+++++-..+. +..... ....+.....
T Consensus 46 ~a~~~A~G~a~~----~~-~~v~~~~~gpg~~~~---~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~---~q~~~~~~~~ 114 (154)
T cd06586 46 GAAGAAAGYARA----GG-PPVVIVTSGTGLLNA---INGLADAAAEHLPVVFLIGARGISAQAKQT---FQSMFDLGMY 114 (154)
T ss_pred HHHHHHHHHHHh----hC-CEEEEEcCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCChhhhccCc---ccccCHHHHH
Confidence 345566666655 33 4444444 8887653 57788888999999999976654 211111 1111111111
Q ss_pred CCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
..++.+.+--.+..+..+.+.+|+..+....||++|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 115 RSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 12333322223677888888888887777789999976
No 147
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.71 E-value=0.0043 Score=71.78 Aligned_cols=110 Identities=13% Similarity=-0.013 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCCEEEEEecCCc-cccccccccc--CCchhhh-
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERAS--ASVDYYT- 270 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~--~~~~~~~- 270 (423)
+||...+.++|......+++||+++|||.+ ..|. -+|..|+..+.+++++|.+|.. +|...+..-. ..+.+.+
T Consensus 469 ~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~--~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v~~i~~~ 546 (1159)
T PRK13030 469 QMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGS--LAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISVPQIARQ 546 (1159)
T ss_pred ccCccchhhceeccccCCCCEEEEeccchhhhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCHHHHHHH
Confidence 455555555555444556789999999995 5664 4799999999999999999998 8866543211 1223322
Q ss_pred -hcCCCCeEEeeCCCHHH----------------HHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 271 -RGDYIPGIWVDGMDILA----------------VREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 271 -~a~G~~~~~VdG~d~~~----------------v~~al~~A~~~ar~~~gP~lIev 310 (423)
++.|+.-+.|-..|+.. ..+++++++ |+.+|+++|-.
T Consensus 547 ~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 547 VEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred HHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 57788776553224443 233455554 35678887753
No 148
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.59 E-value=0.025 Score=50.25 Aligned_cols=111 Identities=23% Similarity=0.181 Sum_probs=66.2
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEe-CCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCch
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALY-GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVD 267 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~ 267 (423)
+.+-.+.+.+|.|++.+. .+..++... |=|.++. .++|..|...++|+|+|.-+-.. .............+
T Consensus 40 ~~~E~~A~~~A~g~~~~~----~~~~v~~~~~gpG~~n~---~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 40 VRHEQGAVGMADGYARAT----GKPGVVLVTSGPGLTNA---VTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred eCCHHHHHHHHHHHHHHH----CCCEEEEEcCCCcHHHH---HHHHHHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 334344566666666652 222333333 5555544 57789999999999999876553 22211100001111
Q ss_pred hhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEE
Q psy4881 268 YYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLET 310 (423)
Q Consensus 268 ~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev 310 (423)
+.+ .+-...++++ +++++.+.+.+|+..++.. +||+.|++
T Consensus 113 ~~~-~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 113 LFR-PITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHH-HHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 111 1112356776 8899999999999998877 79999987
No 149
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=96.36 E-value=0.00089 Score=52.53 Aligned_cols=26 Identities=42% Similarity=0.864 Sum_probs=22.5
Q ss_pred chhhhhhhcccCCCcccCCccccccc
Q psy4881 77 HTEAICRCWKSKKFPFCDNSHKYHNK 102 (423)
Q Consensus 77 ~~~~~c~~~rs~~~p~cdg~H~~~~~ 102 (423)
..+++|||+.|.+-|||||+|.++..
T Consensus 29 ~~~~LCrCG~S~NKPfCDGtH~k~gf 54 (78)
T COG3369 29 EQAALCRCGHSENKPFCDGTHKKTGF 54 (78)
T ss_pred eEEEEEeccCcCCCCccCCccccccc
Confidence 45689999999999999999996644
No 150
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.23 E-value=0.1 Score=47.32 Aligned_cols=112 Identities=19% Similarity=0.153 Sum_probs=68.7
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccccccccCCchh
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~~~~~~~~~~ 268 (423)
+.+-.+..-+|-|.|.+ .+.-..+++..|=|.++. .-++..|...++|+|+|.-+-... ..+. . ....+.
T Consensus 44 ~rhE~~A~~mA~gyar~---tg~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~-~--~q~~d~ 114 (164)
T cd07039 44 VRHEEAAAFAASAEAKL---TGKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELGTD-Y--FQEVDL 114 (164)
T ss_pred eCCHHHHHHHHHHHHHH---hCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCC-C--CcccCH
Confidence 33333344455555544 234445556667777765 345888999999999998765532 1111 0 001111
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
.. +.+--...+++ +++++.+++++|++.++...||+.|++..
T Consensus 115 ~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 115 LALFKDVAVYNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred HHHHHHhhcEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 11 11222346777 88899999999998888878999999853
No 151
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.22 E-value=0.013 Score=67.80 Aligned_cols=110 Identities=13% Similarity=-0.019 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccc--cCCchhhh-
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERA--SASVDYYT- 270 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~--~~~~~~~~- 270 (423)
+||...+.++|.....++++||+++|||.+ ..|. -+|..|...+.+++++|.+|.. +|...+..- ...+.++.
T Consensus 496 ~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v~~i~~~ 573 (1186)
T PRK13029 496 QMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTVPQIARQ 573 (1186)
T ss_pred ccCcchhhheeecccCCCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCHHHHHHH
Confidence 455555555555444556789999999995 5564 4699999999999999999998 886544321 11233332
Q ss_pred -hcCCCCeEEeeCCCHHHH-----------------HHHHHHHHHHhhCCCCcEEEEE
Q psy4881 271 -RGDYIPGIWVDGMDILAV-----------------REAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 271 -~a~G~~~~~VdG~d~~~v-----------------~~al~~A~~~ar~~~gP~lIev 310 (423)
++.|+.-+.|-..++..+ .+++++++ |+.+|+++|-.
T Consensus 574 ~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~l---r~~~GvsViI~ 628 (1186)
T PRK13029 574 VHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQREL---REVPGVSVLIY 628 (1186)
T ss_pred HHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 677887665522234333 33444444 35778877743
No 152
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.12 E-value=0.056 Score=48.31 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=64.0
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhhh-cC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYTR-GD 273 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~~-a~ 273 (423)
...+|-|.+.+ +.. .++...|-|..+. ...|..|...+.|+|+|+-+-.. +...+ +... .++... .+
T Consensus 53 A~~~A~g~~r~----~~~-v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~--~~~~~~~~~ 121 (160)
T cd07034 53 AAEAAIGASAA----GAR-AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQ--SDLMAARYG 121 (160)
T ss_pred HHHHHHHHHhh----CCc-EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCc--HHHHHHHhC
Confidence 34444444443 333 5666667777764 45688888899999999976554 22211 1000 111111 11
Q ss_pred C--CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 274 Y--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 274 G--~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+ ....++. +++++.+.+++|++.++.+++|++|-+
T Consensus 122 ~~~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 122 GHPWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CCCEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 2 4445665 899999999999999999889999864
No 153
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.64 E-value=0.077 Score=62.17 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=64.6
Q ss_pred CEEEEEeCCCc-cchhhHHHHHHHhHhcCCCEEEEEecCC-ccccc-------cccccc---------CCchhhh--hcC
Q psy4881 214 GVCFALYGDGA-ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGT-------SSERAS---------ASVDYYT--RGD 273 (423)
Q Consensus 214 ~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~-------~~~~~~---------~~~~~~~--~a~ 273 (423)
..||++.|||. ...| +..|..+...+.+|.+||.||. |+... +....+ ...|... .++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 47999999996 4555 2447888889999999999998 45432 111110 0112222 345
Q ss_pred CCCeE-Eee-CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 274 YIPGI-WVD-GMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 274 G~~~~-~Vd-G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
|...+ ++. |.++.++.+++++|. +.+||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEECC
Confidence 76554 665 558999999999998 4799999999875
No 154
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.44 E-value=0.33 Score=43.91 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhH-hcCCCEEEEEecCCc-ccccccccccCCchhhh---
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAK-LWNIPCIFVCENNGY-GMGTSSERASASVDYYT--- 270 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~--- 270 (423)
..++|.|+.++ .++.++|..+=|.. ...-+|..|. ..++|+++++-.-+. +--.+.+. ....+..
T Consensus 46 aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~--~~g~~~~~~l 115 (157)
T TIGR03845 46 GVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQI--PMGRATPKLL 115 (157)
T ss_pred HHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCcccc--chhhhhHHHH
Confidence 34555555432 45567888877743 3456688888 999999999954332 21111111 0011111
Q ss_pred hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEE
Q psy4881 271 RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETA 311 (423)
Q Consensus 271 ~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~ 311 (423)
...+++...++ +++++ .++++|++.+.+.+||+.|-+.
T Consensus 116 ~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 116 DTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 22466788887 79999 9999999999999999998653
No 155
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.057 Score=58.80 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHh----cCCC----EEEEEecCCccccccccccc-CC
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKL----WNIP----CIFVCENNGYGMGTSSERAS-AS 265 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~----~~LP----vi~Vv~NN~~gi~~~~~~~~-~~ 265 (423)
|-+|+++-.|+|+.+.+|+-.+.|++|||....|. +.+.-. ++-+ ++=|+.=|+|.|+-+.--.. +.
T Consensus 153 GeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dGavLPIL~lNGykI~npT~lar~s~ 228 (793)
T COG3957 153 GELGYALSHAYGAAFDNPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDGAVLPILHLNGYKIENPTVLARISD 228 (793)
T ss_pred cchhHHHHHHHHhhcCCCCcEEEEEecccccccCc----cccccccccccCccccCceeeEEEecceeccCceeeeecCh
Confidence 45899999999999999999999999999655544 333221 1211 55556668998876543211 22
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHH
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVR 289 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~ 289 (423)
.++.+ +++|..-+-|+|+|+.+..
T Consensus 229 ~el~~~f~G~Gy~p~~veg~d~~d~h 254 (793)
T COG3957 229 EELKALFEGYGYEPVFVEGADPADMH 254 (793)
T ss_pred HHHHHHHhhCCCceeEecCCChHHhh
Confidence 33444 6788888999998988833
No 156
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.86 E-value=0.33 Score=43.93 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=65.1
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-cccccc--cccc--C
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSS--ERAS--A 264 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~--~~~~--~ 264 (423)
+.+-.+..-+|-|.+.+. .-.++++..|=|.++. .-+|..|...+.|+|+|+-+... ...+.. +... .
T Consensus 41 ~rhE~~A~~mA~gyar~t----~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 41 NCNELNAGYAADGYARVK----GLGALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eCCHHHHHHHHHHHHHhh----CCEEEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 333333444555555542 2223333346666654 34588899999999999976553 222211 0000 0
Q ss_pred C-chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 265 S-VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 265 ~-~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
. .+... +.+.-...+|. +++++.+++++|+..++.++||++|++
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 114 DFDVFLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred chHHHHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 0 01111 11222346776 788999999999999888889999987
No 157
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=94.68 E-value=0.24 Score=45.01 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=68.4
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEe--CCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-cccccccccc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALY--GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERAS 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~--GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~ 263 (423)
++.+.+-.+...+|.|.+... +++.+|+. |=|.++. .-+|..|...+.|+|+|+-.-.. ....... +
T Consensus 42 ~i~~~~E~~A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~-q- 111 (172)
T PF02776_consen 42 FIPVRHEQGAAFMADGYARAT-----GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEGRGAF-Q- 111 (172)
T ss_dssp EEE-SSHHHHHHHHHHHHHHH-----SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTTTTST-T-
T ss_pred eecccCcchhHHHHHHHHHhh-----ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhccccc-c-
Confidence 343444344455666666542 44444444 4454544 34577888899999999987664 2221111 1
Q ss_pred CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHh-hCCCCcEEEEEEE
Q psy4881 264 ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHC-RSDKGPILLETAT 312 (423)
Q Consensus 264 ~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~a-r~~~gP~lIev~t 312 (423)
...+... +.+.-...+++ +++++.+++++|++.+ ....||+.|++..
T Consensus 112 ~~~d~~~~~~~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 112 QEIDQQSLFRPVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp SSTHHHHHHGGGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred cchhhcchhccccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 0112222 33344467887 7889999999999888 6778999999863
No 158
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=93.11 E-value=1.1 Score=40.25 Aligned_cols=100 Identities=22% Similarity=0.290 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHH-HhHhcCCCEEEEEecCCcccccccccccCC-chhhhhcCC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN-IAKLWNIPCIFVCENNGYGMGTSSERASAS-VDYYTRGDY 274 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn-~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~-~~~~~~a~G 274 (423)
+++|.|+|+. + .+++++.. ..+.. ..++.|. .++.+++|+++++..-+++... ....+.. .+..- --.
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~-~G~tH~~~~~~a~-~~~ 121 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGE-DGPTHQGIEDIAL-LRA 121 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCC-CCcccchHHHHHH-hcC
Confidence 6777777753 3 45566655 44433 3466666 8899999999988865543211 1111111 11111 113
Q ss_pred CCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 275 IPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 275 ~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+|++.| .=.|+.++...++.|++ .++|++|-.
T Consensus 122 iPg~~v~~Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 122 IPNMTVLRPADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 444322 22378899999998884 567998753
No 159
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.03 E-value=0.62 Score=42.33 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=62.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+..-+|-|.|.. .+.-.++++..|=|.++. .-++..|...+.|+|+|+-+-..........+ ..
T Consensus 38 ~v~~rhE~~A~~mAdgyar~---sg~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~ 109 (162)
T cd07037 38 LHVRVDERSAAFFALGLAKA---SGRPVAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TI 109 (162)
T ss_pred EEeccChHHHHHHHHHHHHh---hCCCEEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--cc
Confidence 33333434444555565554 233344445556666653 34588888999999999875432111110000 01
Q ss_pred hhhh--hcCCCCeEEeeCCCHHH------HHHHHHHHHHHhhCCC-CcEEEEEE
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILA------VREAARFAVNHCRSDK-GPILLETA 311 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~------v~~al~~A~~~ar~~~-gP~lIev~ 311 (423)
|... +..--...+|. ++++ +.+.+++|+..++.+. ||++|++.
T Consensus 110 d~~~l~~~vtk~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 110 DQVGLFGDYVRWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred chhhhccceeeEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 1111 10111224554 4455 7778888888887765 99999874
No 160
>KOG4605|consensus
Probab=92.70 E-value=0.059 Score=45.94 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=32.6
Q ss_pred eEeecCCcchhhhhhhcccCCCcccCCccccccccccCcccceeecCCCccch
Q psy4881 69 RFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNTFPDY 121 (423)
Q Consensus 69 ~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~ 121 (423)
++.++.+ ..+++|.|++|...|+|||+|.-.. .-++.||...+...-.+
T Consensus 49 KVhL~a~-KtY~WCsCG~S~sQPfCDGsHk~~~---~tklrPvrFkvektg~~ 97 (129)
T KOG4605|consen 49 KVHLVAG-KTYRWCSCGRSKSQPFCDGSHKFQG---RTKLRPVRFKVEKTGMV 97 (129)
T ss_pred EEEEecC-CEEEEEeccccCCCccccccccccc---cccccceEeEecccceE
Confidence 3444433 4569999999999999999998432 23556776644444333
No 161
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=92.39 E-value=1.1 Score=46.38 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=75.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcC
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGD 273 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~ 273 (423)
.+.+.+++|++++ +.++++.+-=+++.- .+|.+.+++-..+|+++++.+-.. .++...-.+...|+...-+
T Consensus 58 ~aA~~~a~GAs~a------G~Ra~TaTSg~Gl~l--m~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~ 128 (376)
T PRK08659 58 IASMAAVIGASWA------GAKAMTATSGPGFSL--MQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARW 128 (376)
T ss_pred HHHHHHHHhHHhh------CCCeEeecCCCcHHH--HHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhc
Confidence 3567778888877 445665554455432 368899999999998888887552 2211111111223332222
Q ss_pred ---C-CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 274 ---Y-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 274 ---G-~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
| .+.+.+.-.|+++.+.....|.+.+.+.+-|+++-... .-+|+.
T Consensus 129 ~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~ 177 (376)
T PRK08659 129 GTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE--VVGHMR 177 (376)
T ss_pred ccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech--HhhCCc
Confidence 2 33355556689999999999999888888899998887 377864
No 162
>PRK07524 hypothetical protein; Provisional
Probab=92.31 E-value=1.8 Score=46.53 Aligned_cols=119 Identities=21% Similarity=0.177 Sum_probs=71.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+=.+...+|-|.|.. .+.-.++++..|=|.++. .-++..|-..++|||+|.-.... ............
T Consensus 42 ~i~~~hE~~A~~mAdgyar~---tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~ 115 (535)
T PRK07524 42 HVTPRHEQGAGFMADGYARV---SGKPGVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHEL 115 (535)
T ss_pred EEEeccHHHHHHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccccc
Confidence 34344444445555555544 233345566667777764 35688899999999999865443 111110000111
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
.|... +.+-....+|. +++++.+.+.+|+..++.+ .||+.|++...
T Consensus 116 ~d~~~l~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 116 PDQRAMVAGVAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred ccHHHHhhhhceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 12211 11222345776 7999999999999988876 59999998754
No 163
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.37 E-value=1.6 Score=47.49 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=68.7
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhc-CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYS-GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~-~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
++.+-+-.+...+|.|.|.. . ++-..+++..|=|.+|. .-++..|-..+.|||+|.-+-........ ....
T Consensus 45 ~v~~rhE~~A~~mAdGYar~---t~g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~ 116 (591)
T PRK11269 45 HILARHVEGASHMAEGYTRA---TAGNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKE--DFQA 116 (591)
T ss_pred EEeeCCHHHHHHHHHHHHHH---cCCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC--cccc
Confidence 33333333344445555543 2 33444555668888774 34588888999999999865443111110 0001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.|... +.+-....+|. +++++..++++|++.++.+. ||+.|++...
T Consensus 117 ~d~~~l~~~itk~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 117 VDIESIAKPVTKWAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred cChhhHhhcceeEEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 11111 11112235665 78999999999999888764 8999999854
No 164
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.34 E-value=2.3 Score=46.08 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhccCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 145 DSQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 145 p~~vi~~l~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
.+.+++.|++.--+.+|..-|+..+. +...... ..-.++.+-+-.+...+|.|.|... +.-.++++..|=|.
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~~---~~i~~i~~~hE~~A~~~A~gyar~t---g~~gv~~~t~GPG~ 90 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGAVLP--LYDALYD---CGIPHILTRHEQGAIHAAEGYARIS---GKPGVVIATSGPGA 90 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHH--HHHHHHh---cCCcEEEeCCHHHHHHHHHHHHHHh---CCCeEEEECCCccH
Confidence 44556666654334455433444332 1110000 0011333344444455566666542 33345555568887
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhC
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRS 301 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~ 301 (423)
++. .-+|..|-..+.|||+|.-.-... +.... .+ ..|... +..-....+|. +++++...+++|+..++.
T Consensus 91 ~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~-~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~ 162 (571)
T PRK07710 91 TNV---VTGLADAMIDSLPLVVFTGQVATSVIGSDA-FQ--EADIMGITMPVTKHNYQVR--KASDLPRIIKEAFHIATT 162 (571)
T ss_pred HHH---HHHHHHHhhcCCCEEEEeccCCccccCCCC-cc--ccchhhhhhcccceEEecC--CHHHHHHHHHHHHHHHhc
Confidence 764 345888889999999998654431 11100 00 111111 11112235665 788999999999988887
Q ss_pred CC-CcEEEEEEEe
Q psy4881 302 DK-GPILLETATY 313 (423)
Q Consensus 302 ~~-gP~lIev~t~ 313 (423)
++ ||+.|++...
T Consensus 163 ~~~GPV~l~iP~D 175 (571)
T PRK07710 163 GRPGPVLIDIPKD 175 (571)
T ss_pred CCCCcEEEEcChh
Confidence 74 9999999854
No 165
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=91.11 E-value=1 Score=46.04 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhhh--
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYTR-- 271 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~~-- 271 (423)
+.+.+++|+++| +.++++.+-++++.- .+|.|..|+-..+|+++++.+=.- +....+..+ ...-|..+
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~e~P~v~v~v~R~~p~~g~t~~eq-~D~~~~~~~~ 129 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGISL--KQEGISYLAGAELPCVIVNIMRGGPGLGNIQPSQ-GDYFQAVKGG 129 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHHH--HHHHHHHHHHccCCEEEEEeccCCCCCCCCcchh-HHHHHHHhcC
Confidence 467778888887 567888888888764 479999999999998888776442 211111111 11111212
Q ss_pred cCC-CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 272 GDY-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 272 a~G-~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
+-| .+...++-.|+++.++...+|.+.+.+..-|+++-..++ .+|+.
T Consensus 130 ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 130 GHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 111 223444555899999999999998888888999988874 47764
No 166
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.06 E-value=2.3 Score=46.22 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=70.9
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|-|.|.. .+.-..+++..|=|.++. .-+|..|-..+.|||+|+-.-...... .......
T Consensus 55 ~i~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~ 126 (570)
T PRK06725 55 HILTRHEQAAIHAAEGYARA---SGKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEA 126 (570)
T ss_pred EEEecCHHHHHHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccccc--CCCCccc
Confidence 34344444445556666554 344455666678888764 345888888999999998543321100 0001111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
|... +.+--...+|. +++++.+.+++|+..++.+. ||+.|++...
T Consensus 127 d~~~l~~~itk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 127 DVVGITVPVTKHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred chhhhhhccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 2221 11122345676 79999999999999888875 9999999754
No 167
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=91.02 E-value=1.2 Score=45.62 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEE--eCCC-ccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccc-cccccccC--Cc
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFAL--YGDG-AANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMG-TSSERASA--SV 266 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~--~GDG-a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~-~~~~~~~~--~~ 266 (423)
...+++|.|+.+| -..+.+|.+ .|=| +.|. .-+|+....|++|++++|---+. +.- .+++.... .+
T Consensus 36 ~~av~iaaG~~la----tG~~~~v~mQnSGlGn~vN~---l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~ 108 (361)
T TIGR03297 36 GAAVGLAAGAYLA----TGKRAAVYMQNSGLGNAVNP---LTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITL 108 (361)
T ss_pred hHHHHHHHHHHHh----cCCccEEEEecCchhhhhhH---HHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHH
Confidence 3345555555555 223444443 4444 2332 23344467799999888865443 321 12211111 11
Q ss_pred hhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEE
Q psy4881 267 DYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETA 311 (423)
Q Consensus 267 ~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~ 311 (423)
++- ++++++...++ .+.++..+++.+|++++.+.++|+.|-+.
T Consensus 109 ~lL-~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 109 SLL-DALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHH-HHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 111 57799999985 25678888889999888888999888665
No 168
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.93 E-value=3 Score=45.49 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=68.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|-|.|.. .+.-.++++..|=|.++. .-++..|-..+.|||+|.-.=.. .+... ..+ .
T Consensus 46 ~i~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~ 116 (588)
T PRK07525 46 FIDVAHEQNAGHMADGYTRV---TGRMGMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--E 116 (588)
T ss_pred EEEecCHHHHHHHHHHHHHH---hCCCEEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--c
Confidence 33344434444455555543 233455666668888764 34588888999999999832211 01000 000 0
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.+... +.+--...+++ +++++..++.+|+..++...||+.|++...
T Consensus 117 ~d~~~l~~~~tk~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 117 AEQMPMFEDMTKYQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred cchhhhhhhheeEEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 11111 11111235665 788999999999999888899999999754
No 169
>PRK08611 pyruvate oxidase; Provisional
Probab=90.92 E-value=2.4 Score=46.14 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=71.7
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+..-+|.|.|.. .+.-..+++..|=|.++. .-++..|-..+.|||+|.-.-......... ....
T Consensus 46 ~i~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~--~q~~ 117 (576)
T PRK08611 46 FIQVRHEEVAALAAAAYAKL---TGKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTDF--FQEV 117 (576)
T ss_pred EEEeCcHHHHHHHHHHHHHH---hCCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCCC--cccc
Confidence 33333434445555565543 344455556668888775 345888999999999998765542111110 0011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
|... +..--...+|+ +++++.+++.+|+..+....||+.|++...
T Consensus 118 d~~~l~~~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 118 NLEKMFEDVAVYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred CHHHHhhcccceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 2222 11122235676 788999999999988888889999998754
No 170
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=90.87 E-value=1.6 Score=47.10 Aligned_cols=119 Identities=12% Similarity=0.100 Sum_probs=71.3
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+...+|-|.|.. .+.-.++++..|=|.++. .-++..|...+.|||+|.-..........+......
T Consensus 43 ~i~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~ 116 (554)
T TIGR03254 43 YIGFRHEQSAGYAAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEM 116 (554)
T ss_pred EEEeCCHHHHHHHHHHHHHH---hCCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchh
Confidence 34344444445555565554 234455666668888775 345888999999999998654432100000001111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +..--...+|+ +++++.+++.+|++.++.+ .||+.|++...
T Consensus 117 d~~~~~~~vtk~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 117 DQLAAAKPFAKAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred hHHHHhhhhheeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 2111 11122346777 7899999999999888775 48999998754
No 171
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.63 E-value=2.6 Score=45.41 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=70.0
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|.|.|... +.-.++++..|=|.++. .-++..|-..+.|||+|.-.-.. .+.... ...
T Consensus 41 ~v~~~hE~~A~~~Adgyar~s---g~~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~---~q~ 111 (548)
T PRK08978 41 HLLCRHEQGAAMAAIGYARAT---GKVGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTDA---FQE 111 (548)
T ss_pred EEEeccHHHHHHHHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC---Ccc
Confidence 333444444455566665542 44455666668888764 35588889999999999864332 111100 001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.|... +..--...+|+ +++++...+++|+..++.+. ||+.|++...
T Consensus 112 ~d~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 112 IDVLGLSLACTKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred cchhccccCceeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 11111 11112345776 78999999999998888864 9999999754
No 172
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.61 E-value=2.1 Score=46.40 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=73.1
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+-|-.+..-+|-|.| ++.++-.+|++..|=|++|- .-.|.+|-.-+.|+|+|.=.=..... ....+...|
T Consensus 43 I~~RHEq~Aa~mAdgya---r~TGkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~~~~~--g~~afQe~D 114 (550)
T COG0028 43 ILVRHEQGAAFAADGYA---RATGKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVPTSLI--GTDAFQEVD 114 (550)
T ss_pred EEeccHHHHHHHHHHHH---HHcCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcccccc--Ccchhhhcc
Confidence 33334333344444444 34577788999999999875 34589999999999988742111000 000001112
Q ss_pred hhhhc--CCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEec
Q psy4881 268 YYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATYR 314 (423)
Q Consensus 268 ~~~~a--~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~R 314 (423)
..... +--..++|. +++++.+.+++|++.|..++ ||++|++...=
T Consensus 115 ~~~l~~p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 115 QVGLFRPITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred hhhHhhhhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 22211 112346777 89999999999999998877 99999987553
No 173
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.41 E-value=2 Score=46.69 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=72.7
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|-|.|.. .++-.++++..|=|.++. .-++..|-..+.|||+|.-.-...... +......
T Consensus 45 ~i~~rhE~~A~~mAdgYar~---tg~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~ 116 (574)
T PRK07979 45 HVLVRHEQAAVHMADGLARA---TGEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQEC 116 (574)
T ss_pred EEEeCcHHHHHHHHHHHHHH---hCCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccC--CCCCcee
Confidence 44444544455556666554 244456666778888774 345888889999999998543321100 0001111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEec
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATYR 314 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~R 314 (423)
|... +.+-....+|. +++++..++++|+..++.+. ||+.|++...=
T Consensus 117 d~~~l~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 117 DMVGISRPVVKHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred cHHHHhhcccceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 2222 11112345776 89999999999998888875 99999997653
No 174
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=90.34 E-value=2.8 Score=45.29 Aligned_cols=114 Identities=15% Similarity=0.052 Sum_probs=68.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhh
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYY 269 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~ 269 (423)
+-+-.+..-+|.|.|.. .++-..|++..|=|.++. .-++..|-.-+.|||+|+-.-........ .....+..
T Consensus 45 ~~hE~~A~~mAdgyar~---tgkpgv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 116 (549)
T PRK06457 45 VRHEEGAALAASVEAKI---TGKPSACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIGHD--YFQEVNLT 116 (549)
T ss_pred eCcHHHHHHHHHHHHHH---hCCCeEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccCCC--cccccchh
Confidence 33333444455555544 244445556668888764 35588899999999999864332110000 00011221
Q ss_pred hhcCC--CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 270 TRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 270 ~~a~G--~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
..... ....+|. +++++..++++|+..++...||+.|++...
T Consensus 117 ~l~~~vtk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 117 KLFDDVAVFNQILI--NPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhccceeEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 11111 1235665 788999999999988888889999999754
No 175
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.26 E-value=2.8 Score=45.80 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=66.3
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhh
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYY 269 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~ 269 (423)
+-+-.+..-+|-|.|.... ++-.++++..|=|.++. .-+|..|...+.|||+|.-.-......... ....|..
T Consensus 47 ~rhE~~A~~mAdgyaR~t~--g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~D~~ 119 (588)
T TIGR01504 47 ARHVEGASHMAEGYTRATA--GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIA 119 (588)
T ss_pred eCCHHHHHHHHHHHHHhcC--CCeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccCHH
Confidence 3333334444545444310 22333444457777764 345888899999999998644431111100 0011222
Q ss_pred h--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 270 T--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 270 ~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
. +..--...+|. +++++.+++++|+..|+.++ ||++|++...
T Consensus 120 ~~~~~vtk~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 120 AIAKPVSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHhhhhceEEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 1 11112245676 78999999999998888765 8999999765
No 176
>PRK08266 hypothetical protein; Provisional
Probab=90.16 E-value=3.7 Score=44.11 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=69.6
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|.|.|... +.-.++++..|=|.++. .-++..|...+.|||+|+-.=.. .+..........
T Consensus 46 ~v~~~hE~~A~~~A~gyar~t---g~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~ 119 (542)
T PRK08266 46 VIHTRHEQAAGYMAFGYARST---GRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEM 119 (542)
T ss_pred EEeeccHHHHHHHHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCCCcceec
Confidence 333444344455566665542 33334555568888775 34588889999999999853221 111100000001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEec
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATYR 314 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~R 314 (423)
.|... +.+--...+|+ +++++...+++|+..++.+ .||+.|++...-
T Consensus 120 ~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 120 PDQLATLRSFTKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred ccHhhHHhhhcceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 12221 11222346776 7889999999999888774 599999998653
No 177
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=89.85 E-value=3.9 Score=44.45 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=69.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|-|.|.. .+.-.++++..|=|.++. .-+|..|-..+.|||+|.-.-.. .+... ....
T Consensus 42 ~i~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~~---~~Q~ 112 (579)
T TIGR03457 42 FIPVVHEQGAGHMADGFARV---TGRMSMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGLG---GFQE 112 (579)
T ss_pred EEEeccHHHHHHHHHHHHHH---hCCCEEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCCC---CCcc
Confidence 34344444445555555543 244445556668888774 34588888999999999732111 11100 0000
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.+... +.+--...+|. +++++...+.+|+..++.++||+.|++...
T Consensus 113 ~d~~~l~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 160 (579)
T TIGR03457 113 ADQLPMFQEFTKYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPRD 160 (579)
T ss_pred cchhhhhhcceeEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 11111 11112235665 788999999999998888889999999753
No 178
>PRK07064 hypothetical protein; Provisional
Probab=89.54 E-value=3.9 Score=43.99 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=70.0
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCc
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASV 266 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~ 266 (423)
+.+.+-.+..-+|.|.|.. .++-.++++..|=|.++. .-++..|-..+.|||+|+-+=.. .+.+.........
T Consensus 45 i~~~hE~~A~~~A~gyar~---tg~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 118 (544)
T PRK07064 45 VPARGEAGAVNMADAHARV---SGGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAP 118 (544)
T ss_pred EeeccHHHHHHHHHHHHHh---cCCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCccccccc
Confidence 3344444445556666654 243455666668888775 34588888999999999864221 1111100000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
+... +.+--...+|+ +++++..++.+|+..+..+ .||+.|++...
T Consensus 119 d~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 119 DQLTMLRAVSKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred CHHHHhhhhcceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 2221 11112346776 7889999999999888776 69999999753
No 179
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=89.48 E-value=4.8 Score=43.48 Aligned_cols=116 Identities=19% Similarity=0.186 Sum_probs=70.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|.|.|... +.-..+++..|=|.++. .-++..|-..++|||+|.-.-.. ..... ....
T Consensus 42 ~i~~~hE~~A~~~Adgyar~t---g~~gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~---~~q~ 112 (558)
T TIGR00118 42 HILVRHEQGAAHAADGYARAS---GKVGVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGSD---AFQE 112 (558)
T ss_pred EEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC---CCcc
Confidence 343444444455566666542 33445666668887764 34588888999999999864221 11100 0001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.|... +.+-....+|+ +++++...+.+|+..++.++ ||+.|++...
T Consensus 113 ~d~~~~~~~~tk~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 113 ADILGITMPITKHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred cChhhhhcCccceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 11111 11222346776 78999999999998888774 9999999754
No 180
>PRK08322 acetolactate synthase; Reviewed
Probab=89.36 E-value=2.9 Score=44.98 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=69.6
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+...+|.|.|.+ .+.-..|++..|=|.++. .-++..|-..+.|||+|.-+=........ .....
T Consensus 41 ~i~~~hE~~A~~~A~gyar~---tg~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~~--~~q~~ 112 (547)
T PRK08322 41 LILTRHEQGAAFMAATYGRL---TGKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQG--SFQIV 112 (547)
T ss_pred EEEeccHHHHHHHHHHHHHh---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCCC--ccccc
Confidence 33344444455566666554 233444555567887764 34588888999999999854332111110 01111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +..--...+|+ +++++.+.+.+|+..++.+ .||+.|++...
T Consensus 113 d~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 113 DVVAMMAPLTKWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred cHHHHhhhheeEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 2211 11111235776 8999999999999888886 48999999754
No 181
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=89.20 E-value=2.7 Score=46.08 Aligned_cols=116 Identities=24% Similarity=0.280 Sum_probs=70.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~~~~~~~ 265 (423)
++.+-+-.+...+|.|.|.. .+.-..+++..|=|.++. .-+|..|...++|||+|.-.-... +... ....
T Consensus 72 ~v~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~~---~~q~ 142 (612)
T PRK07789 72 HVLVRHEQGAGHAAEGYAQA---TGRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGTD---AFQE 142 (612)
T ss_pred EEEeccHHHHHHHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---cCcc
Confidence 34344444445556666554 244445566668887774 345888889999999998643321 1110 0001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
.|... +.+--...+|+ +++++...+.+|+..++.+ .||++|++...
T Consensus 143 ~d~~~l~~~~tk~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 143 ADIVGITMPITKHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred cchhhhhhcceeEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 12111 11112235676 8999999999999888876 49999999754
No 182
>PLN02470 acetolactate synthase
Probab=89.19 E-value=2.4 Score=46.18 Aligned_cols=116 Identities=25% Similarity=0.236 Sum_probs=70.9
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+..-+|-|.|... +.-..+++..|=|.++. .-++..|-..+.|||+|.-.-.. .+.+. ....
T Consensus 54 ~i~~rhE~~A~~~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~ 124 (585)
T PLN02470 54 NVLCRHEQGEVFAAEGYAKAS---GKVGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRMIGTD---AFQE 124 (585)
T ss_pred EEEeccHHHHHHHHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhhcCCC---cCcc
Confidence 444445444555566666542 34445666678888774 34588888999999999854332 11110 0001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.+... +.+--...+|+ +++++.+++.+|+..++.++ ||+.|++...
T Consensus 125 ~d~~~l~~~~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 125 TPIVEVTRSITKHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred cchhhhhhhheEEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 11111 11112235675 79999999999999888875 9999999754
No 183
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=89.13 E-value=1.1 Score=43.21 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=65.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc---ccccccccccCCchh-hh
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY---GMGTSSERASASVDY-YT 270 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~---gi~~~~~~~~~~~~~-~~ 270 (423)
+.+.+++|++++ +.++++.+-=.+++- ..|.|.+++-.++|+++++.|-.. |++++.+ ..|+ ..
T Consensus 47 ~A~~~~~GAs~a------G~ra~t~ts~~Gl~l--m~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~----q~D~~~~ 114 (230)
T PF01855_consen 47 AAMEAAIGASAA------GARAMTATSGPGLNL--MAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPE----QDDLMAA 114 (230)
T ss_dssp HHHHHHHHHHHT------T--EEEEEECCHHHH--HCCCHHHHHHTT--EEEEEEEB---SSSB--SB-----SHHHHHT
T ss_pred HHHHHHHHHHhc------CCceEEeecCCcccc--cHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCC----hhHHHHH
Confidence 456667777765 334555544444432 357799999999998888876443 2333221 1232 22
Q ss_pred hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 271 RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 271 ~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
+-+|+..+.. .++.+.++....|.+.+.+..-|+++-...++. .|+.
T Consensus 115 ~d~~~~vl~p--~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 115 RDSGWIVLAP--SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp TTSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred HhcCeEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 4456654444 489999999999998888889999998877664 3654
No 184
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=89.12 E-value=5.9 Score=36.12 Aligned_cols=105 Identities=19% Similarity=0.117 Sum_probs=53.9
Q ss_pred cCCCCCC--cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH-HHhHhc--------CCCEEEEEecCCcccccc
Q psy4881 190 VTNQLVT--VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY-NIAKLW--------NIPCIFVCENNGYGMGTS 258 (423)
Q Consensus 190 ~sg~~g~--l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL-n~A~~~--------~LPvi~Vv~NN~~gi~~~ 258 (423)
..|-.-+ +++|.|+|+. +.++++.+.=+.|.. ..+|-+ +.++.+ ++||+++...=+++....
T Consensus 48 ~~gIaEq~~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ 120 (167)
T cd07036 48 DTPIAEAGIVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGA 120 (167)
T ss_pred eCCCcHHHHHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcCh
Confidence 4444433 7777777764 334444322233333 234544 444433 599999985433332121
Q ss_pred cccccCCchhhhhcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 259 SERASASVDYYTRGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 259 ~~~~~~~~~~~~~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
+ .+..+. ...-.+|++.| .=.|+.+....++.+++ .++|+++-
T Consensus 121 t---hs~~~~-a~lr~iPg~~V~~Psd~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 121 Q---HSQSLE-AWFAHIPGLKVVAPSTPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred h---hhhhHH-HHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 1 112222 21113444322 11278888888888884 57899873
No 185
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.05 E-value=2.8 Score=45.37 Aligned_cols=117 Identities=20% Similarity=0.157 Sum_probs=68.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+..-+|.|.|.. .+.-.++++..|=|.++. .-++..|-..+.|||+|.-.-....... ......
T Consensus 46 ~i~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~ 117 (572)
T PRK06456 46 HVLMRHEQAAAHAADGYARA---SGVPGVCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEA 117 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHh---hCCCEEEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccCC--CCcccc
Confidence 34344444445555555554 233334444568888774 3458888899999999985433211000 000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
|... +.+--...+|+ +++++..++.+|+..++.+. ||+.|++...
T Consensus 118 d~~~i~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 118 DAMGVFENVTKYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred chhhhhhccceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 1111 11112235665 88999999999998888865 9999999754
No 186
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=88.96 E-value=3.7 Score=44.50 Aligned_cols=119 Identities=12% Similarity=0.138 Sum_probs=69.8
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+..-+|-|.+.. .+.-..+++..|=|.++. .-++..|...+.|||+|+-.-........+......
T Consensus 50 ~i~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~ 123 (569)
T PRK09259 50 YIGFRHEQSAGNAAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQGDYEEL 123 (569)
T ss_pred EEeeCCHHHHHHHHHHHHHH---hCCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCCCcccc
Confidence 34344444445555555554 233445555668888775 345888999999999998643321100000000111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +.+--...+|+ +++++...+.+|+..|+.+ .||+.|++...
T Consensus 124 d~~~~~~~~tk~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 124 DQLNAAKPFCKAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred chhhhhhhheeeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 2211 11112345776 7999999999999888775 58999999754
No 187
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.95 E-value=3.4 Score=45.27 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=69.4
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCc
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASV 266 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~ 266 (423)
+.+-+-.+..-+|.|.|.. .++-.++++..|=|+++. .-+|..|...+.|||+|.-+-.. .+.+. .....
T Consensus 64 i~~rhE~~Aa~aA~gyar~---tgk~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~Qe~ 134 (616)
T PRK07418 64 ILVRHEQGAAHAADGYARA---TGKVGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGTD---AFQET 134 (616)
T ss_pred EEeccHHHHHHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC---Ccccc
Confidence 3333333344445555543 344455666668888775 34588899999999999864332 11111 00011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
|... +..--...+|+ +++++..++.+|++.|+.++ ||++|++...
T Consensus 135 d~~~~~~~vtk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 135 DIFGITLPIVKHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred cHHHHhhhcceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 1111 11112235676 89999999999999888876 9999998753
No 188
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=88.93 E-value=4.5 Score=44.03 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=69.6
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|.|.|... +.-..+++..|=|.++. .-++..|-..+.|||+|+-.-.. .+.. .....
T Consensus 41 ~i~~~hE~~A~~~Adgyar~t---g~~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~ 111 (586)
T PRK06276 41 HILTRHEQAAAHAADGYARAS---GKVGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKLIGN---DAFQE 111 (586)
T ss_pred EEEeccHHHHHHHHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCC---CCCcc
Confidence 343444445555666666542 33445555667887764 34588888999999999843221 1100 00001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.|... +..-....+|+ +++++..++.+|+..|+.++ ||+.|++...
T Consensus 112 ~d~~~l~~~~tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 112 IDALGIFMPITKHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred ccHhhHHhhhcceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 11111 11112345676 78899999999998888764 9999999754
No 189
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=88.70 E-value=4.9 Score=43.44 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=68.8
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|.|.|.+ .++-..+++..|=|.++. .-+|..|-..+.|||+|.-.=..........+ ..
T Consensus 49 ~v~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~ 120 (557)
T PRK08199 49 VIVCRQEGGAAMMAEAYGKL---TGRPGICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFREREAFQ--EI 120 (557)
T ss_pred EEEeccHHHHHHHHHHHHHh---cCCCEEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCccc--cc
Confidence 34344444445556666554 234445556668888764 34588888999999999853222110000000 11
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +.+--...+|. +++++.+.+.+|+..++.+ .||+.|++...
T Consensus 121 d~~~l~~~~tk~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 121 DYRRMFGPMAKWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred CHHHhhhhhhceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 1111 11111235665 8999999999999888887 49999998744
No 190
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.62 E-value=2.7 Score=45.98 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=71.3
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+...+|-|.|.. .+.-..+++..|=|.++. .-++..|-..+.|||+|.-.-....... ......
T Consensus 52 ~I~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~ 123 (595)
T PRK09107 52 HILVRHEQGAGHAAEGYARS---TGKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQEC 123 (595)
T ss_pred EEEECChHHHHHHHHHHHHH---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCccc
Confidence 44455545555556666553 244455666668888775 3458888899999999986544211000 000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
|... +..--...+|+ +++++...+.+|++.++.+. ||+.|++...
T Consensus 124 d~~~l~~~vtk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 124 DTVGITRPCTKHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred chhhhhhhheEEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence 1111 11111235776 89999999999999988874 9999998754
No 191
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=88.56 E-value=3.2 Score=44.96 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=68.9
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|.|.|... +.-.++++..|=|.++. .-+|..|...+.|||+|.-.-....... ......
T Consensus 54 ~i~~~hE~~A~~~Adgyar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~ 125 (564)
T PRK08155 54 HILARHEQGAGFIAQGMARTT---GKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGT--DAFQEV 125 (564)
T ss_pred EEEeccHHHHHHHHHHHHHHc---CCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccC--CCcccc
Confidence 343444445555666666542 33334444557777764 3458889999999999985433211000 000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +.+--...+|+ +++++...+.+|++.++.+ .||+.|++...
T Consensus 126 d~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 126 DTYGISIPITKHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred chhhhhhccceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 1111 11111235665 7899999999999888887 49999999754
No 192
>PRK07586 hypothetical protein; Validated
Probab=88.56 E-value=3.6 Score=43.92 Aligned_cols=118 Identities=17% Similarity=0.017 Sum_probs=71.0
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+...+|-|.|.. .+.-.++++..|=|.+|. .-++..|-..+.|||+|.-+-........ .....
T Consensus 42 ~i~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~ 113 (514)
T PRK07586 42 CVLGLFEGVATGAADGYARM---AGKPAATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYHRKYD--APLTS 113 (514)
T ss_pred EEEeccHHHHHHHHHHHHHH---HCCCEEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhccCCC--ccccc
Confidence 34344444445556666554 233345556668887664 34577888999999999865332110000 00011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEec
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATYR 314 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~R 314 (423)
|... +..--...+|. +++++.+.+++|+..++.+ .||++|++...-
T Consensus 114 d~~~~~~~vtk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 114 DIEALARPVSGWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred chhhhhccccceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 2222 11112235676 7899999999999988887 699999998653
No 193
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.20 E-value=3.6 Score=44.57 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|-|.|.. .+.-..+++..|=|.++. .-++..|-..+.|||+|.-.-....... ......
T Consensus 45 ~v~~~hE~~A~~mAdgyar~---tg~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~--~~~q~~ 116 (574)
T PRK06882 45 HVLVRHEQAAVHMADGYARS---TGKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGT--DAFQEC 116 (574)
T ss_pred EEEeccHHHHHHHHHHHHHh---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--Cccccc
Confidence 34344444445555565554 233445555568887765 3458888899999999985433211000 000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +..-....+|. +++++...+.+|+..++.+ .||+.|++...
T Consensus 117 d~~~l~~~vtk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 117 DMLGISRPVVKHSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred chhhhhhcccceEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 1111 11112346776 8899999999999888775 49999999765
No 194
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.10 E-value=4.4 Score=44.02 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=69.8
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+-+-.+...+|-|.|.. .+.-.++++..|=|.++. .-++..|-..+.|||+|.-.-......... ....|
T Consensus 46 i~~rhE~~A~~mAdgyar~---tg~~gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q~~d 117 (574)
T PRK06466 46 ILVRHEQAATHMADGYARA---TGKTGVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGEDA--FQETD 117 (574)
T ss_pred EEeCcHHHHHHHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCc--ccccc
Confidence 3333333334455555543 344455666668888774 355888999999999998644431111000 00112
Q ss_pred hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 268 YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 268 ~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
... +..--...+|+ +++++..++++|+..|+.+. ||+.|++...
T Consensus 118 ~~~l~~~itk~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 118 MVGISRPIVKHSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhhccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 211 11112345776 79999999999998888774 9999999765
No 195
>PRK05858 hypothetical protein; Provisional
Probab=88.00 E-value=5.6 Score=42.83 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=68.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|-|.|.. .+.-..+++..|=|.++. .-++..|...+.|||+|.-+-..........+ ..
T Consensus 45 ~i~~rhE~~A~~~AdGyar~---tg~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~ 116 (542)
T PRK05858 45 LIDVRHEQTAAFAAEAWAKL---TRVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EI 116 (542)
T ss_pred EEeeccHHHHHHHHHHHHHh---cCCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--cc
Confidence 44455545555666666654 233344444557777664 34588899999999988854332110000001 01
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +.+--...+|+ +++++.+.+.+|+..+..+ .||+.|++...
T Consensus 117 d~~~l~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 117 DHVPFVAPVTKFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred chhhhhhhhhceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 1111 11112345776 7889999999999887765 58999998754
No 196
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.87 E-value=6.1 Score=42.75 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=68.4
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+-+-.+...+|-|.|... ++-..+++..|=|.++. .-+|..|-..+.|||+|.-.-....... ......
T Consensus 48 ~v~~~hE~~A~~~Adgyar~t---g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~ 119 (561)
T PRK06048 48 HILVRHEQAAAHAADGYARAT---GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMIGN--DAFQEA 119 (561)
T ss_pred EEEeccHHHHHHHHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccccCC--CCcccc
Confidence 343444444455555555442 44455666668888775 3458888899999999974322110000 000011
Q ss_pred hhhhhc--CCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~~a--~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|..... .--...+|. +++++..++.+|+..++.+ .||+.|++...
T Consensus 120 d~~~~~~~itk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 120 DITGITMPITKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred chhhhccCcceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 121111 111235676 7889999999999888776 49999999753
No 197
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=87.47 E-value=3.2 Score=42.90 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=72.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC---cccccccccccCCchhhh-
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG---YGMGTSSERASASVDYYT- 270 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~---~gi~~~~~~~~~~~~~~~- 270 (423)
+++.+++|+++| +.++++.+-=+++.- .+|.+.+|+-..+|+++++.+-. -|+.+..+ .....+..
T Consensus 58 aA~~~a~GAs~a------G~Ra~taTSg~G~~l--m~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~--q~D~~~~~~ 127 (375)
T PRK09627 58 SGISVALGASMS------GVKSMTASSGPGISL--KAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA--QGDVNQAKN 127 (375)
T ss_pred HHHHHHHHHHhh------CCCEEeecCCchHHH--HhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc--hHHHHHHhc
Confidence 456777777776 344665554444432 26889999999999888777643 23332221 11111111
Q ss_pred hcCC-CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 271 RGDY-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 271 ~a~G-~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
..+| .+-+.+.-.|+++.+....+|.+.+.+..-|+++-... + -+|+.
T Consensus 128 ~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~ 176 (375)
T PRK09627 128 PTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-T-VGHMY 176 (375)
T ss_pred CCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-H-HhCCe
Confidence 1222 22245555689999999999999888888999998877 3 37764
No 198
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.42 E-value=3.9 Score=44.43 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=70.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|-|.|.. .+.-.++++..|=|.++. .-++..|-..+.|||+|.-.-...... .......
T Consensus 45 ~v~~rhE~~A~~mAdgyar~---tg~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~ 116 (572)
T PRK08979 45 HILVRHEQAAVHMADGYARA---TGKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQEC 116 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHH---hCCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCCccc
Confidence 44444544555556666654 243445555568887775 345888889999999998533221100 0000111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
|... +..--...+|+ +++++...+++|+..|+.+. ||+.|++...
T Consensus 117 d~~~~~~~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 117 DMIGISRPVVKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred chhHHhhhceeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 2211 11112245777 89999999999999888865 9999998754
No 199
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=87.36 E-value=3.3 Score=45.05 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcCC
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGDY 274 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~G 274 (423)
+.+.+++|+++| +.++++.+-=.+++- ..|.|.+|+-..+|+++++.+-. |.++...-.....|+...-+|
T Consensus 248 aA~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~ 318 (562)
T TIGR03710 248 AAINMAIGASYA------GARAMTATSGPGFAL--MTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYG 318 (562)
T ss_pred HHHHHHHhHHhc------CCceeecCCCCChhH--hHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcC
Confidence 356777777776 445665555555543 47889999999999888877654 332211111111222221111
Q ss_pred ----CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 275 ----IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 275 ----~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
.+-+.+.-.|+++.+....+|.+.+.+..-|+++-...+. +|+
T Consensus 319 ~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l--~~~ 365 (562)
T TIGR03710 319 GHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL--ANS 365 (562)
T ss_pred CCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH--hCC
Confidence 2224455568999999999999998888999999888774 554
No 200
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=87.17 E-value=7.1 Score=41.97 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=67.4
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+...+|-|.|.. .+.-..+++..|=|.++. .-++..|...+.|||+|+-.-...... .......
T Consensus 39 ~i~~~hE~~A~~~Adgyar~---tg~~gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~ 110 (539)
T TIGR02418 39 LIVVRHEQNAAFMAQAVGRI---TGKPGVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSM 110 (539)
T ss_pred EEEeCcHHHHHHHHHHHHHH---hCCceEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccccc--cCccccc
Confidence 33333433334445554443 344455666668887764 345888999999999998643321100 0001111
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
+... +..--...+++ +++++...+.+|++.++.+ .||+.|++...
T Consensus 111 d~~~~~~~~tk~~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 111 DNVALFRPITKYSAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred chhhhhhcceeeeeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 1111 11111234665 8899999999999888776 48999999765
No 201
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=87.10 E-value=3.7 Score=42.63 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD 273 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~ 273 (423)
+.|.+++|++++ +.++++.+-=++++- .+|.|.+|+-..+|+++++.|-... +...-.....|+.. +--
T Consensus 60 aA~~~aiGAs~a------GaRa~TaTSg~Gl~l--m~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~ 129 (390)
T PRK08366 60 SAMAACIGASAA------GARAFTATSAQGLAL--MHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDT 129 (390)
T ss_pred HHHHHHHHHHhh------CCCeEeeeCcccHHH--HhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhc
Confidence 567778888877 455666665555543 3788999999999988887643321 22211111223322 222
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
|+ +-.-..|+++.+.....|.+.+.+..-|+++-...++. .|..
T Consensus 130 g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~-sh~~ 173 (390)
T PRK08366 130 GW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFIL-SHTY 173 (390)
T ss_pred CE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccc-cccc
Confidence 44 22223489999998999998888889999998877764 5554
No 202
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=86.99 E-value=7.3 Score=41.99 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=70.1
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-ccccc--cccc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSS--ERAS 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~--~~~~ 263 (423)
++.+.+-.+..-+|-|.|.. .+.-.++++..|=|.++. .-++..|...++|||+|.-+-... +.... +.+.
T Consensus 41 ~v~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~ 114 (535)
T TIGR03394 41 LHTLSHEPAVGFAADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 114 (535)
T ss_pred EEcccCcchHHHHHhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeec
Confidence 34344444444445555553 344555666678888775 245888999999999998654321 11100 0010
Q ss_pred CCc-hhhhhcCCC--CeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 ASV-DYYTRGDYI--PGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 ~~~-~~~~~a~G~--~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
... +.......+ ...+|. +++++.+++.+|+..++...||+.|++...
T Consensus 115 ~~~~~~~~~~~~vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 115 RTLDSQFQVFKEVTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred cchHHHHHhhhhheEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 001 121111121 234665 788888888888888877889999999865
No 203
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=86.97 E-value=5.6 Score=43.17 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+...+|-|.|.. .+.-..+++..|=|.++. .-+|..|-..+.|||+|.-.-.. .+.+.. ...
T Consensus 51 ~i~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~---~q~ 121 (566)
T PRK07282 51 HILARHEQGALHEAEGYAKS---TGKLGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKDA---FQE 121 (566)
T ss_pred EEEecCHHHHHHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCCC---ccc
Confidence 34344444445555555543 344456666678888775 34588888899999999865332 221110 000
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.+... +..-....+|+ +++++..++.+|+..++.++ ||+.|++...
T Consensus 122 ~d~~~~~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 122 ADIVGITMPITKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred cChhchhcCCCceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 11111 11112235676 78899999999999888874 9999998764
No 204
>PRK12474 hypothetical protein; Provisional
Probab=86.69 E-value=6.1 Score=42.29 Aligned_cols=118 Identities=18% Similarity=0.025 Sum_probs=70.8
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+..-+|-|.|.. .+.-.++++..|=|++|. .-++..|-..+.|||+|+-......... ......
T Consensus 46 ~i~~rhE~~A~~mAdgYaR~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~ 117 (518)
T PRK12474 46 PVLCLFEGVVTGAADGYGRI---AGKPAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTS 117 (518)
T ss_pred EEEecchHHHHHHHHHHHHH---hCCCEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCC--CCcccc
Confidence 44444544555556666554 344455666668887764 3457788889999999986433211000 000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEec
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATYR 314 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~R 314 (423)
|... +..--...+|+ +++++.+++++|+..++.+. ||++|++...=
T Consensus 118 d~~~~~~~vtk~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 118 DIDGFARPVSRWVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred CHHHhhhcccceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 2222 11112234665 89999999999998887765 99999997653
No 205
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=86.66 E-value=6.3 Score=42.82 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=68.1
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+-+-.+..-+|.|.|.. .+.-.++++..|=|++|. .-+|..|-..++|||+|.-.=....... ......|
T Consensus 53 v~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Q~~d 124 (578)
T PRK06112 53 IAYRTENAGGAMADGYARV---SGKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDR--NAFQELD 124 (578)
T ss_pred EEeccHHHHHHHHHHHHHH---hCCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCC--CCccccC
Confidence 3333434444455555543 244455666668877764 3558888999999999985422210000 0000111
Q ss_pred hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 268 YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 268 ~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
... +..-....+|+ +++++.+.+.+|+..++.+. ||+.|++...
T Consensus 125 ~~~l~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 125 HIALFQSCTKWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhhhhccccceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 111 11112235676 78999999999998888864 9999999754
No 206
>PTZ00089 transketolase; Provisional
Probab=86.46 E-value=4.9 Score=44.63 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC-C
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD-Y 274 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~-G 274 (423)
+++|.|+|.. +.-+++++.+. .|.+ -.++.+..++..++||+||....+.+.+..-.-..+..+++- |+. +
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn 488 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPN 488 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCC
Confidence 6777777762 23366666664 6665 678889999999999999998888754321111111123322 333 4
Q ss_pred CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 275 IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 275 ~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+..++=- |..++..+++.|++ ..+||+.|-.
T Consensus 489 ~~V~~Pa--D~~E~~~~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 489 LLVIRPA--DGTETSGAYALALA---NAKTPTILCL 519 (661)
T ss_pred cEEEecC--CHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 4434322 78888888888874 3569998854
No 207
>PRK08617 acetolactate synthase; Reviewed
Probab=86.24 E-value=5.8 Score=42.78 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=67.8
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCc
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASV 266 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~ 266 (423)
+.+.+-.+...+|.|.|.. .+.-..+++..|=|.++. .-++..|...+.|||+|.-.... .+.+.........
T Consensus 46 i~~~hE~~A~~~A~gyar~---tg~~gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~ 119 (552)
T PRK08617 46 IVTRHEQNAAFMAAAIGRL---TGKPGVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNV 119 (552)
T ss_pred EEeccHHHHHHHHHhHhhh---cCCCEEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCCCccccchh
Confidence 3344434444445554432 333445555568888774 34588899999999999863332 1111000000001
Q ss_pred hhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
++. +.+--...+|+ +++++..++.+|++.+..+ .||+.|++...
T Consensus 120 ~l~-~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 120 ALF-RPITKYSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhh-hhhcceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 111 11112346776 8999999999999888776 48999999754
No 208
>PLN02573 pyruvate decarboxylase
Probab=85.89 E-value=6.3 Score=42.94 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=70.2
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-ccccc--cccc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSS--ERAS 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~--~~~~ 263 (423)
++.+-+-.+..-+|-|.|.. .+ -..+++..|=|+++. .-++..|...+.|||+|.-.-... ..+.. ....
T Consensus 57 ~i~~rhE~~A~~mAdgyaR~---tg-~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~ 129 (578)
T PLN02573 57 LIGCCNELNAGYAADGYARA---RG-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI 129 (578)
T ss_pred EEEeCCHHHHHHHHHHHHHH---hC-CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeec
Confidence 33344434444445555543 34 556777778888774 235788888999999998654331 11100 0000
Q ss_pred CCchhhh-----hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 ASVDYYT-----RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 ~~~~~~~-----~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
..+++.. +..-....+|. +++++.+.+++|+..|+...||+.|++...
T Consensus 130 ~~~~~~~~~~~~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 130 GLPDFSQELRCFQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred CCCChHHHHHHhhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 0011111 11112345676 788999999999998888889999999765
No 209
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=85.62 E-value=6.4 Score=43.66 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC-C
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD-Y 274 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~-G 274 (423)
+++|.|+|+. +.-.++++.+. .|.+ -.++++.+++..++||++|....+++.+..-.-..+..+++- ++. +
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf~--~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn 481 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTFL--MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPN 481 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEhH--HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCC
Confidence 6666666662 22344444332 4544 557888999999999999998877754321110111122222 333 4
Q ss_pred CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 275 IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 275 ~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+..++-- |..++..+++.|++ ..++|++|-.
T Consensus 482 ~~v~~Pa--D~~E~~~~~~~a~~---~~~gP~~irl 512 (653)
T TIGR00232 482 LSVWRPC--DGNETAAAWKYALE---SQDGPTALIL 512 (653)
T ss_pred CEEEeeC--CHHHHHHHHHHHHh---cCCCcEEEEE
Confidence 4444333 78899888888874 3578998843
No 210
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=85.28 E-value=5 Score=41.90 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hc
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RG 272 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a 272 (423)
.+.+.+++|++++ +.++++.+-=.+++- .+|.|.+|+-..+|+++++.+-+.+ + .+......+|+.. +.
T Consensus 66 ~~A~~~~~GAs~a------GaRa~TaTS~~Gl~l--m~E~l~~aa~~~~P~V~~~~~R~~~-~-~~~i~~d~~D~~~~r~ 135 (407)
T PRK09622 66 HAAMSACVGAAAA------GGRVATATSSQGLAL--MVEVLYQASGMRLPIVLNLVNRALA-A-PLNVNGDHSDMYLSRD 135 (407)
T ss_pred HHHHHHHHHHHhh------CcCEEeecCcchHHH--HhhHHHHHHHhhCCEEEEEeccccC-C-CcCCCchHHHHHHHhc
Confidence 3567777888877 445665554444443 4788999999999988887776642 1 1221222234433 33
Q ss_pred CCCCeEEeeCCCHHHHHHHHHHHHHHhhCC--CCcEEEEEEEecCCCCC
Q psy4881 273 DYIPGIWVDGMDILAVREAARFAVNHCRSD--KGPILLETATYRYSGHS 319 (423)
Q Consensus 273 ~G~~~~~VdG~d~~~v~~al~~A~~~ar~~--~gP~lIev~t~R~~gH~ 319 (423)
-|+.. +.-.++++.++....|.+.+.+. .-|+++-...++ .+|.
T Consensus 136 ~g~iv--l~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~-~sh~ 181 (407)
T PRK09622 136 SGWIS--LCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL-CSHT 181 (407)
T ss_pred CCeEE--EeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh-hhCc
Confidence 35543 44458999999999999887765 789998877654 3564
No 211
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=84.98 E-value=12 Score=39.78 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEe-CCCccchhhHHHHHHHhH--------hcCCCEEEEEecCCcccccccccccCCc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALY-GDGAANQGQVFEVYNIAK--------LWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~-GDGa~~~G~~~EaLn~A~--------~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
.+++|.|+|++ .-++++.+. .+-. +-.+-+-.|.++ .+++||+|+..|-+.+.... +.+..
T Consensus 201 ~vg~AaGlA~~-----G~rPiv~~~~~~f~--~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~ 270 (464)
T PRK11892 201 FAGIGVGAAFA-----GLKPIVEFMTFNFA--MQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHhC-----CCEEEEEEehHHHH--HHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccC
Confidence 37888888875 345666554 3322 212233356777 89999999987765422111 11111
Q ss_pred hhhhhcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 267 DYYTRGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 267 ~~~~~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
+ ......+|++.| .=.|+.+....++.|++ .++|++|
T Consensus 271 d-~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~----~~~Pv~i 308 (464)
T PRK11892 271 Y-AAWYSHIPGLKVVAPYSAADAKGLLKAAIR----DPNPVIF 308 (464)
T ss_pred H-HHHHhhCCCCEEEEeCCHHHHHHHHHHHhh----CCCcEEE
Confidence 2 221114444322 11268888888888873 5789886
No 212
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=84.65 E-value=8.7 Score=41.75 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=69.0
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+-.+..-+|-|.|. ..++-..+++..|=|.++. .-++..|-..++|||+|.-.-.. .+.... ...
T Consensus 41 ~v~~rhE~~A~~~Adgyar---~tgk~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~---~q~ 111 (575)
T TIGR02720 41 YIQVRHEEVGALAAAADAK---LTGKIGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMDT---FQE 111 (575)
T ss_pred EEEeccHHHHHHHHHHHHH---hhCCceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCC---cce
Confidence 3434444444445555553 3344556666678887764 34588888999999999865332 111110 000
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.+... +..-....+|. +++++...+.+|+..|+...||+.|++...
T Consensus 112 id~~~~~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 112 MNENPIYADVAVYNRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred echhhhhhhcceEEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 11111 11111224565 688888888888888888889999999865
No 213
>KOG4605|consensus
Probab=84.55 E-value=0.56 Score=40.14 Aligned_cols=34 Identities=24% Similarity=0.689 Sum_probs=29.1
Q ss_pred eeeeeEeecCCcchhhhhhhcccCCCcccCCcccc
Q psy4881 65 VVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKY 99 (423)
Q Consensus 65 ~~~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~ 99 (423)
+.+.+|.+|.. ..+++|.|.....-|+|||.|..
T Consensus 84 lrPvrFkvekt-g~~wlCnCKqT~~rP~CDGtH~~ 117 (129)
T KOG4605|consen 84 LRPVRFKVEKT-GMVWLCNCKQTQRRPYCDGTHRS 117 (129)
T ss_pred ccceEeEeccc-ceEEeecccccCCCCccCCcccc
Confidence 33788988666 67899999999999999999983
No 214
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=84.36 E-value=0.13 Score=44.80 Aligned_cols=28 Identities=11% Similarity=-0.073 Sum_probs=20.6
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccc
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPD 120 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~ 120 (423)
...+|++.|+ +++++. .+|++|.+.+++
T Consensus 104 ~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~ 135 (137)
T PF00205_consen 104 AKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLR 135 (137)
T ss_dssp SEEEEEESSGGGTTSSSEESEEEESHHHHHHH
T ss_pred CEEEEEECCHHHhCCCCCCCEEEEECHHHHhh
Confidence 4678999999 688877 378887765544
No 215
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=84.29 E-value=7.2 Score=40.56 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD 273 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~ 273 (423)
+.+++++|++++ +.++++.+-=.+++- .+|.|.+|+-.++|+++++-|=..+ .++.......|+.. +-.
T Consensus 61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~l--m~E~l~~aag~~lP~V~vv~~R~~~--~p~~i~~d~~D~~~~rd~ 130 (394)
T PRK08367 61 SAISACVGASAA------GVRTFTATASQGLAL--MHEVLFIAAGMRLPIVMAIGNRALS--APINIWNDWQDTISQRDT 130 (394)
T ss_pred HHHHHHHHHHhh------CCCeEeeeccchHHH--HhhHHHHHHHccCCEEEEECCCCCC--CCCCcCcchHHHHhcccc
Confidence 567777888777 445555554444432 3688999999999999887554332 22221111123322 334
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhC--CCCcEEEEEEEecCCCCCC
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRS--DKGPILLETATYRYSGHSM 320 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~--~~gP~lIev~t~R~~gH~~ 320 (423)
|+-.+. ..|+++.++-...|.+.+.+ ..-|+++-...+| -+|+.
T Consensus 131 g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~-~sH~~ 176 (394)
T PRK08367 131 GWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFI-LTHTV 176 (394)
T ss_pred CeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhh-hcCcc
Confidence 543333 35899999988889888774 3479999888877 46754
No 216
>PRK06154 hypothetical protein; Provisional
Probab=84.29 E-value=7.1 Score=42.42 Aligned_cols=90 Identities=26% Similarity=0.200 Sum_probs=56.5
Q ss_pred EEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccccccccCCchhhhhcCCCCeEEeeCCCHHHHHHHHHH
Q psy4881 216 CFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSSERASASVDYYTRGDYIPGIWVDGMDILAVREAARF 294 (423)
Q Consensus 216 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~v~~al~~ 294 (423)
+++..|=|.++. .-+|..|...+.|||+|.-..... .... +. ....... +..--...+|+ +++++.+.+.+
T Consensus 85 ~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~-~d~~~~~-~~vtk~~~~v~--~~~~~~~~i~~ 156 (565)
T PRK06154 85 FAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGSTDVA-PN-FESLRNY-RHITKWCEQVT--LPDEVPELMRR 156 (565)
T ss_pred EEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccccCC-CC-cchhhhH-hhcceeEEECC--CHHHHHHHHHH
Confidence 334458887765 345888999999999998543321 1110 00 0001111 11112235676 88999999999
Q ss_pred HHHHhhCC-CCcEEEEEEEe
Q psy4881 295 AVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 295 A~~~ar~~-~gP~lIev~t~ 313 (423)
|+..++.+ .||++|++...
T Consensus 157 A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 157 AFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHhcCCCceEEEecchH
Confidence 99888875 59999999765
No 217
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=84.12 E-value=6.7 Score=42.85 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=70.0
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+..-+|-|.|.+ .+.-..+++..|=|+++. .-+|..|-..+.|||+|.-.=.... .........
T Consensus 45 ~i~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~--~~~~~~q~~ 116 (597)
T PRK08273 45 FVQARHEEMAAFMAVAHAKF---TGEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAA--LGGHYQQEV 116 (597)
T ss_pred EEEeccHHHHHHHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhh--cCCCCCCcc
Confidence 34344444445556666554 233445555668888775 3458888899999999984321100 000000011
Q ss_pred hhhhhcCCC---CeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 267 DYYTRGDYI---PGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 267 ~~~~~a~G~---~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
|.......+ ...+|+ +++++.+.+++|+..+...+||+.|++...-
T Consensus 117 d~~~l~~~vt~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 117 DLQSLFKDVAGAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred CHHHHHHHHHHHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 111100011 235676 7889999999999988888899999987653
No 218
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.64 E-value=12 Score=40.92 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=68.4
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+-+-.+...+|-|.|... +.-..+++..|=|.++. .-++..|...+.|||+|.-.=.. ...+ .....
T Consensus 62 ~i~~rhE~~A~~~AdgYar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~ 132 (587)
T PRK06965 62 HVLVRHEQAAVHAADGYARAT---GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIGQ---DAFQE 132 (587)
T ss_pred EEEeCCHHHHHHHHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCccc
Confidence 343444444455566665542 33445555567777764 34588888999999999742211 1100 00001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
.|... +-+--...+|. +++++.+.+.+|+..++.+ .||+.|++...
T Consensus 133 ~d~~~l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 133 CDTVGITRPIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred ccHHHHhcCCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 11111 11112245776 7899999999999988887 49999999764
No 219
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=82.92 E-value=10 Score=41.22 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=64.7
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccc-cccccCCch
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTS-SERASASVD 267 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~-~~~~~~~~~ 267 (423)
+-+-.+..-+|-|.|.. .+.-..|++..|=|.++. .-+|..|-..+.|||+|.-+-.. .+.+. .|.. ...+
T Consensus 47 ~rhE~~A~~mAdgyar~---tgk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~-d~~~ 119 (578)
T PRK06546 47 VRHEEAAAFAAAAEAQL---TGKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQET-HPDR 119 (578)
T ss_pred eCcHHHHHHHHHhHHHh---hCCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCcccc-Chhh
Confidence 33433444455555543 233334444457777763 23477888899999999853221 11100 0100 0011
Q ss_pred hhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 268 YYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 268 ~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
+.+ ..--...+|. +++++..++.+|++.+....||+.|++...
T Consensus 120 l~~-~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 120 LFV-ECSGYCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hcc-cceeeEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 111 1111235776 788999999999988888789999998754
No 220
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.71 E-value=11 Score=40.73 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=68.3
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASAS 265 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~ 265 (423)
++.+.+=.+...+|-|.|.. .+.-..+++..|=|.++. .-++..|-..+.|||+|.-.=.. .... .....
T Consensus 44 ~v~~rhE~~A~~~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~ 114 (563)
T PRK08527 44 HILTRHEQAAVHAADGYARA---SGKVGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSLIGT---DAFQE 114 (563)
T ss_pred EEEeccHHHHHHHHHHHHhh---hCCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcc
Confidence 34344444445555555543 244455666668888774 34588888999999999742111 0000 00001
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
.|... +.+--...+|+ +++++..++++|+..++.+. ||+.|++...
T Consensus 115 ~d~~~~~~~~tk~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 115 IDAVGISRPCVKHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred cchhhhhhcccceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 11111 11111234665 89999999999999888765 8999998754
No 221
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=82.62 E-value=7.9 Score=42.05 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=68.2
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccc-cccc---cc--cc
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGM-GTSS---ER--AS 263 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi-~~~~---~~--~~ 263 (423)
+-+-.+..-+|-|.|.. .++-..+++..|=|.+|. .-+|..|...+.|||+|.-+-.... .+.. .. ..
T Consensus 56 ~rhE~~A~~~Adgyar~---tgk~gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 56 CPHEIVAISMAHGYALV---TGKPQAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cCCHHHHHHHHHHHHHh---hCCCeEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 33333344445555543 233445555667777764 3568889999999999987544311 1100 00 00
Q ss_pred CC-chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 264 AS-VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 264 ~~-~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
.. .|... +..--...+|+ +++++..++.+|+..++.+ .||++|++...
T Consensus 130 qe~~d~~~~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 00 12111 11111235676 7899999999999988876 69999999743
No 222
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=82.40 E-value=12 Score=34.13 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=57.2
Q ss_pred CcHHHHHHHHHHHhcCC-CCEEEEEeCCCcc-chhhHHHHHH-HhHhcCCCEEEEEecCCcccccccccccCCchhhh-h
Q psy4881 196 TVPLGVGIALAAKYSGT-KGVCFALYGDGAA-NQGQVFEVYN-IAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-R 271 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~-~~~vv~~~GDGa~-~~G~~~EaLn-~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~ 271 (423)
.+++|.|+|++ ++ ..+++..+++=.. .+-..++.+. ..+..++|+. |+..-+++.+..-....+..+..- +
T Consensus 60 ~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~ 134 (178)
T PF02779_consen 60 MVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILR 134 (178)
T ss_dssp HHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHH
T ss_pred ccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccc
Confidence 37777777776 43 4455566655443 0123455555 7788999998 655544432221111111122211 2
Q ss_pred cC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 272 GD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 272 a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+. |+..+.- .|+.++...++.|+++ +.++|++|-.
T Consensus 135 ~iPg~~v~~P--sd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 135 SIPGMKVVVP--SDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp TSTTEEEEE---SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccC--CCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 22 4433332 3788999999888842 2579999854
No 223
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=82.17 E-value=5 Score=41.95 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=63.2
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccc-cccccC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTS-SERASA 264 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~-~~~~~~ 264 (423)
++.+.+-.+..-+|-|.|.. .+.-.++++..|=|.++. .-+|..|-..+.|||+|.-.-... ..+. .|.. .
T Consensus 41 ~v~~~hE~~A~~mAdgyar~---tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~-d 113 (432)
T TIGR00173 41 VHVHIDERSAGFFALGLAKA---SGRPVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRGCGANQTI-D 113 (432)
T ss_pred EEEecCCccHHHHHHHHHhc---cCCCEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhCCCCCccc-c
Confidence 34344545555556666654 344455666667777764 345888888999999997543321 1000 0000 0
Q ss_pred CchhhhhcCCCCeEEeeCCCHHH------HHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 265 SVDYYTRGDYIPGIWVDGMDILA------VREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 265 ~~~~~~~a~G~~~~~VdG~d~~~------v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
..++.+ -+--...+|. ++++ +...+.+|+..+..+ .||+.|++...
T Consensus 114 ~~~~~~-~~tk~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 114 QPGLFG-SYVRWSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred hhhHHh-hccceeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 011111 1111123443 3333 667777777776664 48999999754
No 224
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=81.96 E-value=12 Score=40.77 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=66.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCchh
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~ 268 (423)
+-+-.+..-+|.|.|.. .+.-..+++..|=|.++. .-+|..|-..+.|||+|.-.-.. .+.+.. ....|.
T Consensus 57 ~rhE~~A~~~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~---~q~~d~ 127 (585)
T CHL00099 57 VRHEQGAAHAADGYARS---TGKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTDA---FQEVDI 127 (585)
T ss_pred ecCHHHHHHHHHHHHHh---cCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC---ccccch
Confidence 33333344445555443 244445566668888775 34588888999999999854221 111100 001111
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
.. +.+--...+|. +++++.+++++|+..++.+ .||+.|++...
T Consensus 128 ~~~~~~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 128 FGITLPIVKHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhhcCceeEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 11 11112235776 7899999999999888775 48999998754
No 225
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=81.89 E-value=14 Score=40.05 Aligned_cols=113 Identities=10% Similarity=0.031 Sum_probs=65.0
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEE--eCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccccccccC
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFAL--YGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSSERASA 264 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~--~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~~~~~~ 264 (423)
+.+-+-.+..-+|.|.|.. .+ ++.||+ .|=|.++. .-++..|...+.|||+|.-+-... .... ...
T Consensus 45 i~~rhE~~A~~~Adgyar~---tg--~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~Q 113 (574)
T PRK09124 45 MHTRHEEVAAFAAGAEAQL---TG--ELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG---YFQ 113 (574)
T ss_pred EEeCcHHHHHHHHHHHHHh---hC--CcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---Ccc
Confidence 3333444445556666554 23 345554 57777663 234778888999999998653321 1110 000
Q ss_pred Cchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 265 SVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 265 ~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
..+... +..-....+|+ +++++.+.+.+|+..+....||+.|++...
T Consensus 114 ~~d~~~l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 114 ETHPQELFRECSHYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred ccChhhhcccceeeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 011111 01111234666 788888889899888887789999998643
No 226
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=81.12 E-value=10 Score=41.80 Aligned_cols=101 Identities=18% Similarity=0.283 Sum_probs=58.3
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH-HHhHhcCCCEEEEEecCCcc-cccccccccCCchhhhhcC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY-NIAKLWNIPCIFVCENNGYG-MGTSSERASASVDYYTRGD 273 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL-n~A~~~~LPvi~Vv~NN~~g-i~~~~~~~~~~~~~~~~a~ 273 (423)
.+++|.|+|++ .-+++++++ +.|-+ ..+|-+ +.++..++||++++...++. ...++.. ...+++- ..
T Consensus 364 ~vg~AaGlA~~-----G~~Pvv~~~--a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~--~~~dia~-lr 432 (617)
T TIGR00204 364 AVTFAAGMAIE-----GYKPFVAIY--STFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQ--GAFDISY-LR 432 (617)
T ss_pred HHHHHHHHHHC-----CCEEEEEec--HHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccc--cchHHHH-Hh
Confidence 37778887763 345566654 44555 445555 66788999999998777652 1111111 1122221 11
Q ss_pred CCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 274 YIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 274 G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
.+|+++| .=.|+.++...++.|++ ..++|++|-.
T Consensus 433 ~iPgl~V~~Psd~~e~~~~l~~a~~---~~~~Pv~ir~ 467 (617)
T TIGR00204 433 CIPNMVIMAPSDENELRQMLYTGYH---YDDGPIAVRY 467 (617)
T ss_pred cCCCcEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 3444322 11278888888888874 2348998844
No 227
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=80.90 E-value=12 Score=40.29 Aligned_cols=118 Identities=16% Similarity=0.050 Sum_probs=68.6
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+-.+..-+|.|.|.. .+.-.++++..|=|.++. .-++..|-..+.|||+|.-.-..........+ ...
T Consensus 51 ~i~~~hE~~A~~~Adgyar~---tg~~~v~~vt~gpG~~N~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~ 123 (530)
T PRK07092 51 YVLGLQEAVVVGMADGYAQA---TGNAAFVNLHSAAGVGNA---MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAV 123 (530)
T ss_pred EEEEccHHHHHHHHHHHHHH---hCCceEEEeccCchHHHH---HHHHHHHhhcCCCEEEEecCCcccccCccchh-ccc
Confidence 34344444455566666654 344444555567777653 35688899999999988764332111000000 001
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
+... +.+--...+|. +++++.+.+.+|+..++.++ ||+.|++...
T Consensus 124 d~~~l~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 124 QAAELPKPYVKWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred CHHHhhcccccceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 1111 11111224564 78899999999998888774 8999999754
No 228
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=80.70 E-value=14 Score=36.85 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=60.7
Q ss_pred eeeecCCCCCC--cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHh-HhcCCCEEEEEecCCcccccccccc
Q psy4881 186 QLVTVTNQLVT--VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIA-KLWNIPCIFVCENNGYGMGTSSERA 262 (423)
Q Consensus 186 ~~~~~sg~~g~--l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A-~~~~LPvi~Vv~NN~~gi~~~~~~~ 262 (423)
+++ .-|-.-| ++.|.|.|++- ..+.++-+ +.|.++-.||=+..+ +..+|||.+|+.+-++.....-.-.
T Consensus 50 R~~-NvGIaEQ~mvg~AAGLA~~G-----k~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sH 121 (312)
T COG3958 50 RFF-NVGIAEQDMVGTAAGLALAG-----KKPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSH 121 (312)
T ss_pred hhe-ecchHHHHHHHHHHHHHhcC-----CCceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccc
Confidence 344 3343444 78888888762 34444443 677776777766544 6779999999999876322111000
Q ss_pred cCCchhhh-hcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 263 SASVDYYT-RGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 263 ~~~~~~~~-~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
....|++= | |+|-..| .=.|.-+..+++..+. +.+||+.+-.
T Consensus 122 q~~EDiaimR--~lpn~~V~~P~D~v~~~~i~~~~~----~~~GP~Y~Rl 165 (312)
T COG3958 122 QALEDIAIMR--GLPNMTVIAPADAVETRAILDQIA----DYKGPVYMRL 165 (312)
T ss_pred hhHHHHHHHh--cCCCceEEccCcHHHHHHHHHHHH----hcCCCEEEEe
Confidence 11123321 3 3333222 2124555555555554 5689998743
No 229
>PRK12753 transketolase; Reviewed
Probab=79.75 E-value=13 Score=41.33 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC-
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD- 273 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~- 273 (423)
.+++|.|+|.- +.-.++++.+. .|.. -.++.+.+++..++||++|...-+++.+..-.-..+..+++- |+.
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iP 486 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTP 486 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCC
Confidence 36777777762 22345555553 5655 678999999999999999998888755321111111223322 333
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
++..++-- |..++..+++.|++ ..+||+.|-+
T Consensus 487 n~~v~~Pa--D~~E~~~~~~~al~---~~~gP~~irl 518 (663)
T PRK12753 487 NFSTWRPC--DQVEAAVAWKLAIE---RHNGPTALIL 518 (663)
T ss_pred CCEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 44444333 67888888888884 2479988754
No 230
>PLN02790 transketolase
Probab=79.10 E-value=14 Score=40.97 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHhcC-CCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC-
Q psy4881 197 VPLGVGIALAAKYSG-TKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD- 273 (423)
Q Consensus 197 l~~A~GaA~a~k~~~-~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~- 273 (423)
+++|.|+|+. + .-+++++.+. .|.. ..++++..++..++||+||....+.+.+..-.-..+..+++- |+.
T Consensus 405 v~~AaGlA~~----G~G~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iP 477 (654)
T PLN02790 405 GAICNGIALH----SSGLIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMP 477 (654)
T ss_pred HHHHHHHHhc----CCCcEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCC
Confidence 6677777663 2 2355555442 2232 356778889999999999998877754221110111122222 222
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
++..++=- |..++..+++.|++ ..++|+.|-.
T Consensus 478 nl~V~~Pa--D~~E~~~~l~~al~---~~~gP~~irl 509 (654)
T PLN02790 478 NILMLRPA--DGNETAGAYKVAVT---NRKRPTVLAL 509 (654)
T ss_pred CcEEEeCC--CHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 33333322 78888888888874 2468988754
No 231
>PRK12754 transketolase; Reviewed
Probab=78.60 E-value=35 Score=38.04 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=62.6
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC-
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD- 273 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~- 273 (423)
.+++|.|+|+. +.-.+.++.+ ..|.. ..++.+.+++..++||++|...-+++.+..-.-..+..+++- |+.
T Consensus 414 Mv~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iP 486 (663)
T PRK12754 414 MTAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 486 (663)
T ss_pred HHHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCC
Confidence 36667777762 2224444444 25555 678899999999999999998888755321111111223332 343
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
++..++-- |..++..+++.|++ ..+||+.|-.
T Consensus 487 n~~V~~Pa--D~~E~~~~~~~a~~---~~~gP~yirl 518 (663)
T PRK12754 487 NMSTWRPC--DQVESAVAWKYGVE---RQDGPTALIL 518 (663)
T ss_pred CcEEecCC--CHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 44444332 78888888888885 2469987643
No 232
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=77.82 E-value=14 Score=40.98 Aligned_cols=100 Identities=22% Similarity=0.250 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH-HHhHhcCCCEEEEEecCCccccccccccc-CCchhhh-hcC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY-NIAKLWNIPCIFVCENNGYGMGTSSERAS-ASVDYYT-RGD 273 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL-n~A~~~~LPvi~Vv~NN~~gi~~~~~~~~-~~~~~~~-~a~ 273 (423)
+++|.|+|++ .-+++++++.+ |.+ ..++.+ +.++..++|+++++..-++ +....... ...+++- +..
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f~~--Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~THq~~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVYST--FLQ-RGYDQLLHDVALQNLPVRFVLDRAGL--VGADGATHAGAFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEehHH--HHH-HHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCccccccHHHHHHhcC
Confidence 6777777763 34666666543 554 456666 6689999999999855543 21111111 1122221 222
Q ss_pred -CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEE
Q psy4881 274 -YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETA 311 (423)
Q Consensus 274 -G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~ 311 (423)
|+..++= .|..++..+++.|++ ..++|++|-..
T Consensus 444 Pnl~V~~P--sd~~e~~~~l~~a~~---~~~~P~~ir~~ 477 (641)
T PRK12571 444 PNMTVMAP--RDEAELRHMLRTAAA---HDDGPIAVRFP 477 (641)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHh---CCCCcEEEEEe
Confidence 3433332 278899999988884 24799998543
No 233
>PRK05899 transketolase; Reviewed
Probab=77.00 E-value=18 Score=39.89 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=65.0
Q ss_pred CeeeecCCCCC--CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccc
Q psy4881 185 NQLVTVTNQLV--TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSE 260 (423)
Q Consensus 185 ~~~~~~sg~~g--~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~ 260 (423)
.+++ ..|-.- .+++|.|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|++++....+++.+ ..+.
T Consensus 367 ~R~~-d~GIaE~~~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH 438 (624)
T PRK05899 367 GRYI-HYGVREFAMAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH 438 (624)
T ss_pred CCee-eeChhHHHHHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc
Confidence 3444 344343 37777777754 3245555533 2444 35678899999999999999987775332 1221
Q ss_pred cccCCchhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 261 RASASVDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 261 ~~~~~~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+ +..++.- +.. |+..+.- .|+.++..+++.|++ ..++|++|-.
T Consensus 439 -q-~~edia~~r~iP~~~V~~P--~d~~e~~~~l~~a~~---~~~~P~~ir~ 483 (624)
T PRK05899 439 -Q-PVEQLASLRAIPNLTVIRP--ADANETAAAWKYALE---RKDGPSALVL 483 (624)
T ss_pred -c-cHHHHHHHHhCCCcEEEeC--CCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 1 1122211 222 4443332 278899888888884 2379998866
No 234
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=75.55 E-value=16 Score=39.92 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=66.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhH--hcCCCEEEEEecCCcccccccccccCCchhhhhc
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAK--LWNIPCIFVCENNGYGMGTSSERASASVDYYTRG 272 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~--~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a 272 (423)
..+.+++|++++ +.++++.+-=.+++- ..|.|..++ -..+|+++++-|-. |-...+..+ ...+..+.
T Consensus 57 ~a~~~~~GAs~a------G~ra~t~ts~~Gl~~--~~e~l~~~~~~g~~~~iV~~~~~~~-gp~~~~~~q--~d~~~~~~ 125 (595)
T TIGR03336 57 VAVEVAAGAAWS------GLRAFCTMKHVGLNV--AADPLMTLAYTGVKGGLVVVVADDP-SMHSSQNEQ--DTRHYAKF 125 (595)
T ss_pred HHHHHHHHHHhc------CcceEEEccCCchhh--hHHHhhhhhhhcCcCceEEEEccCC-CCccchhhH--hHHHHHHh
Confidence 456677777776 344555444444432 245565555 33677777776542 221111111 11233344
Q ss_pred CCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC
Q psy4881 273 DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 320 (423)
Q Consensus 273 ~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~ 320 (423)
.+++.+.-. ++++++....+|++.+++..-|+++-... .-+|+.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~ 169 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMR 169 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccce
Confidence 467654443 89999999999999998999999998875 456654
No 235
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=75.47 E-value=16 Score=40.41 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH-HHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhh-hcC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV-YNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYT-RGD 273 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea-Ln~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~-~a~ 273 (423)
+++|.|+|+. .-++++++++ .|.+ ..++- .+.++..++||+|++...++ |...++.. ...+.+- +..
T Consensus 412 Vg~AaGLA~~-----G~rPvv~~fs--~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~Dia~lr~i 481 (641)
T PLN02234 412 VTFAAGLACE-----GLKPFCTIYS--SFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFDVTFMACL 481 (641)
T ss_pred HHHHHHHHHC-----CCeEEEEehH--HHHH-HHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHHHHHHhcC
Confidence 7777777764 3466666653 3444 33443 46778999999999876664 21111111 1122221 222
Q ss_pred -CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCC
Q psy4881 274 -YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 316 (423)
Q Consensus 274 -G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~ 316 (423)
|+..+.-- |+.++..+++.|+. ..++|++| ...|..
T Consensus 482 Pnl~V~~Ps--d~~E~~~~l~~a~~---~~~~Pv~i--r~~R~~ 518 (641)
T PLN02234 482 PNMIVMAPS--DEAELFNMVATAAA---IDDRPSCF--RYHRGN 518 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHh---CCCCCEEE--Eeeccc
Confidence 44433322 78888888887764 24689988 444543
No 236
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=74.98 E-value=23 Score=39.52 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH-HHHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhh-hcC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE-VYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYT-RGD 273 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E-aLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~-~a~ 273 (423)
+++|.|+|+. + -+++++++. .|.+ ..++ -++.++..++||+|++...++ +...++. +...|++- +..
T Consensus 411 vg~AaGLA~~----G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH--~~~~Dia~lr~i 480 (677)
T PLN02582 411 VTFAAGLACE----G-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--CGAFDVTYMACL 480 (677)
T ss_pred HHHHHHHHHC----C-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcc--cccHHHHHHhcC
Confidence 7777777764 3 567777754 3544 3444 457778999999999887665 2111111 11122221 222
Q ss_pred -CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 274 -YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 274 -G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
|+..+.= .|..++..+++.|+. ..++|++|-.
T Consensus 481 Pnl~V~~P--sd~~E~~~~l~~al~---~~~gPv~IR~ 513 (677)
T PLN02582 481 PNMVVMAP--SDEAELFHMVATAAA---IDDRPSCFRY 513 (677)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 4433322 278888888888874 2358999854
No 237
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=74.81 E-value=19 Score=39.33 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH-HHHhHhcCCCEEEEEecCCccccccccccc-CCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV-YNIAKLWNIPCIFVCENNGYGMGTSSERAS-ASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea-Ln~A~~~~LPvi~Vv~NN~~gi~~~~~~~~-~~~~~~~-~a 272 (423)
.+++|.|+|+. + -++++..+. .|.. ..+|. .+.++..++||+++....++. ....... ...+++- ++
T Consensus 333 mvg~A~GlA~~----G-~~p~~~~f~--~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~--g~dG~tH~~~edia~lr~ 402 (580)
T PRK05444 333 AVTFAAGLATE----G-LKPVVAIYS--TFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLV--GADGPTHQGAFDLSYLRC 402 (580)
T ss_pred HHHHHHHHHHC----C-CeeEEEeeH--HHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcC--CCCCccccccHHHHHHhc
Confidence 37777887773 3 455555554 4544 44553 555789999999999866652 1111111 1122221 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
. |+..+.- .|+.++..+++.|++ ..++|++|-.
T Consensus 403 iP~l~V~~P--sd~~e~~~~l~~a~~---~~~~P~~ir~ 436 (580)
T PRK05444 403 IPNMVIMAP--SDENELRQMLYTALA---YDDGPIAIRY 436 (580)
T ss_pred CCCCEEEee--CCHHHHHHHHHHHHh---CCCCcEEEEe
Confidence 2 4443332 278899999998884 2379998744
No 238
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=74.65 E-value=24 Score=36.23 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=57.2
Q ss_pred CeeeecCCCCC--CcHHHHHHHHHHHhcCCCCEEEEEe-CCCccchhhHHHH-HHHhHhcC--------CCEEEEEecCC
Q psy4881 185 NQLVTVTNQLV--TVPLGVGIALAAKYSGTKGVCFALY-GDGAANQGQVFEV-YNIAKLWN--------IPCIFVCENNG 252 (423)
Q Consensus 185 ~~~~~~sg~~g--~l~~A~GaA~a~k~~~~~~~vv~~~-GDGa~~~G~~~Ea-Ln~A~~~~--------LPvi~Vv~NN~ 252 (423)
.+++ ..|-.- .+++|.|+|++ ..++++++. .|-. + ..+|- .+.++.++ +||+++..+ +
T Consensus 74 ~R~~-d~GIAEq~~vg~AaGlA~~-----G~~P~v~~~~~~f~--~-ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G 143 (356)
T PLN02683 74 DRVL-DTPITEAGFTGIGVGAAYA-----GLKPVVEFMTFNFS--M-QAIDHIINSAAKTNYMSAGQISVPIVFRGPN-G 143 (356)
T ss_pred CcEE-ECchhHHHHHHHHHHHHHC-----CCEEEEEEehhhHH--H-HHHHHHHHHHHHhccccCCCccCCEEEEEeC-C
Confidence 4455 344343 37777777775 235565553 3322 2 22343 46666665 999999877 5
Q ss_pred cccccccccccCCchhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 253 YGMGTSSERASASVDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 253 ~gi~~~~~~~~~~~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
..... ...++....+- +.. |+..+.-- |..++..+++.|++ .++|+.|-
T Consensus 144 ~~~g~--G~tH~~~~~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir 194 (356)
T PLN02683 144 AAAGV--GAQHSQCFAAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFL 194 (356)
T ss_pred CCCCC--CCccccCHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 32211 11111112111 222 44433322 78888888888873 57899984
No 239
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=74.45 E-value=18 Score=37.23 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccc-ccccccccCCchhhh-h
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGM-GTSSERASASVDYYT-R 271 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi-~~~~~~~~~~~~~~~-~ 271 (423)
.+.++..+|++++ .-+..-+..|.|-.-| +|.|-.|+-..+|+++++.+..... +-+.. ....|+.. +
T Consensus 57 ~~a~s~v~GA~~a-----Gar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~--~dq~D~~~~r 126 (365)
T COG0674 57 IGAISAVIGASYA-----GARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPLPSTGLPIK--GDQSDLMAAR 126 (365)
T ss_pred HHHHHHHHHHHhh-----CcceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCcCCCccccc--ccHHHHHHHH
Confidence 3567777888876 2344556667776655 6889999999999999988777511 11111 11123332 3
Q ss_pred cCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 272 GDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 272 a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
--|++-+-.. ++++.+...-.|.+.|.+..-|+++-..-++
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~ 167 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFL 167 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccch
Confidence 2366655554 6777777777777777777789888766554
No 240
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=69.62 E-value=16 Score=32.75 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc---ccccccccccCCchhhhhc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY---GMGTSSERASASVDYYTRG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~---gi~~~~~~~~~~~~~~~~a 272 (423)
++|++.|+.+| ++ ++.+.+---|=-++=...++|+ ..+++|+++++..-++ +|-.++.-....+++- +.
T Consensus 54 g~GIcAGa~lA----Gk-k~ailmQnsGlGNsiNal~SL~--~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiL-e~ 125 (172)
T COG4032 54 GVGICAGAYLA----GK-KPAILMQNSGLGNSINALASLY--VTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKIL-EG 125 (172)
T ss_pred ceeeehhhhhc----CC-CcEEEEeccCcchHHHHHHHHH--HHhccchhhhhhccchhhcCCccccccchhhHHHH-hh
Confidence 46667777776 32 3333332222112211233343 5789999998887765 3322222111122222 45
Q ss_pred CCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
.+++.+.+. .+++-++.++.+...+.+..+|+.+-+
T Consensus 126 ~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 126 LELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred cCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 578888887 477878888888888878888987654
No 241
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=69.45 E-value=64 Score=32.59 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=54.6
Q ss_pred CeeeecCCCCC--CcHHHHHHHHHHHhcCCCCEEEEEeC-CCccchhhHHHH-HHHhHhc--------CCCEEEEEecCC
Q psy4881 185 NQLVTVTNQLV--TVPLGVGIALAAKYSGTKGVCFALYG-DGAANQGQVFEV-YNIAKLW--------NIPCIFVCENNG 252 (423)
Q Consensus 185 ~~~~~~sg~~g--~l~~A~GaA~a~k~~~~~~~vv~~~G-DGa~~~G~~~Ea-Ln~A~~~--------~LPvi~Vv~NN~ 252 (423)
.+++ ..|-.- .+++|.|+|++ + -++++++.. +-. + ..+|- .+.++.+ ++|+++...+=.
T Consensus 51 ~R~~-d~gIaE~~~vg~AaGlA~~----G-~~Piv~~~~~~f~--~-ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~ 121 (327)
T PRK09212 51 KRVI-DTPITEHGFAGLAVGAAFA----G-LRPIVEFMTFNFS--M-QAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGA 121 (327)
T ss_pred Ccee-ecchhHHHHHHHHHHHHHc----C-CeeEEEeehhhHH--H-HHHHHHHHHHHHHhhccCCCcCccEEEEeCCCC
Confidence 3344 344343 37777777774 3 466666553 322 1 12222 2444444 577777655422
Q ss_pred cccccccccccCCchhhhhcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEE
Q psy4881 253 YGMGTSSERASASVDYYTRGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLETA 311 (423)
Q Consensus 253 ~gi~~~~~~~~~~~~~~~~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev~ 311 (423)
++....+..+ .+.+....+|++.| .=.|+.++..+++.|++ .++|++|--.
T Consensus 122 ~~~~G~tH~~----~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~ 173 (327)
T PRK09212 122 AARVAAQHSQ----CYAAWYSHIPGLKVVAPYFAADCKGLLKTAIR----DPNPVIFLEN 173 (327)
T ss_pred CCCCCccccc----CHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEEEc
Confidence 2221111111 12121114555422 12378888888888874 5789998433
No 242
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=67.49 E-value=44 Score=37.45 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH-HHHhHhcCCCEEEEEecCCccccccccccc-CCchhhhhcCC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV-YNIAKLWNIPCIFVCENNGYGMGTSSERAS-ASVDYYTRGDY 274 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea-Ln~A~~~~LPvi~Vv~NN~~gi~~~~~~~~-~~~~~~~~a~G 274 (423)
+++|.|+|.. .-++++++.. .|.+ ..++- .+-++..++||+|++..= |++....... ...|++- ...
T Consensus 436 Vt~AAGLA~~-----G~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~a--Glvg~DG~TH~g~~Dia~-lr~ 504 (701)
T PLN02225 436 VTFSAGLSSG-----GLKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSA--GLVGSDGPVQCGAFDIAF-MSS 504 (701)
T ss_pred HHHHHHHHHC-----CCEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECC--ccCCCCCccccccHHHHH-Hhc
Confidence 7777777753 3577888884 5655 33443 455788999999998753 4332111111 1122211 113
Q ss_pred CCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 275 IPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 275 ~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+|++.| .=.|..++...++.|+. ..++|+.|-.
T Consensus 505 IPnm~V~aPsD~~El~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 505 LPNMIAMAPADEDELVNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 444322 11278888888887763 3468999754
No 243
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=66.72 E-value=81 Score=32.33 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHH-HHHhHh--------cCCCEEEEEecCCcccccccccccCCc
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEV-YNIAKL--------WNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~Ea-Ln~A~~--------~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
+++|.|+|++ + -++++++ +.|= .+- .+|- .+.++. +++|++++.-...++....+. +.
T Consensus 95 vg~AaGlA~~----G-~~Pvv~~~fa~F--l~r-a~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tH---s~- 162 (355)
T PTZ00182 95 AGFAIGAAMN----G-LRPIAEFMFADF--IFP-AFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYH---SQ- 162 (355)
T ss_pred HHHHHHHHhC----C-CEEEEEechhhH--HHH-HHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcc---cc-
Confidence 7777777774 2 4555554 4543 232 2333 333444 356676664322333222211 11
Q ss_pred hhhhhcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 267 DYYTRGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 267 ~~~~~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
.+-.....+|++.| .=.|+.++..+++.|++ .++|++|
T Consensus 163 ~~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~----~~~P~~i 201 (355)
T PTZ00182 163 SFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIR----DPNPVVF 201 (355)
T ss_pred hHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEE
Confidence 12121113444322 11278888888888884 4799977
No 244
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=66.00 E-value=20 Score=39.37 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=51.5
Q ss_pred HHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEE
Q psy4881 230 VFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPIL 307 (423)
Q Consensus 230 ~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~l 307 (423)
..-++.+|+..++|+++|.....+|.+..-.-..+...++. |+. ++..+|=- |..+...+.+.|+++ .+||+.
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCeE
Confidence 45569999999999999999999865432211112223333 554 66665432 566888888888863 589999
Q ss_pred EEEE
Q psy4881 308 LETA 311 (423)
Q Consensus 308 Iev~ 311 (423)
|-..
T Consensus 516 Lilt 519 (663)
T COG0021 516 LILT 519 (663)
T ss_pred EEEe
Confidence 8653
No 245
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=64.69 E-value=48 Score=36.29 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH-HHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcCCC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE-VYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGDYI 275 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E-aLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~G~ 275 (423)
+++|.|+|+. + -+++++.+.+ |.+ ..++ -.+.++..++||++++..-+++...++. +...|++- ...+
T Consensus 333 v~~AaGlA~~----G-~~Pvv~~fs~--Fl~-ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH--~~~~Dia~-lr~i 401 (581)
T PRK12315 333 VAFASGIAAN----G-ARPVIFVNST--FLQ-RAYDQLSHDLAINNNPAVMIVFGGSISGNDVTH--LGIFDIPM-ISNI 401 (581)
T ss_pred HHHHHHHHHC----c-CeEEEEeeHH--HHH-HHHHHHHHHHHhcCCCEEEEEECCcccCCCccc--cccHHHHH-HhcC
Confidence 6777777763 3 4666666655 433 2334 3455788999999998754442111111 11122221 1134
Q ss_pred CeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 276 PGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 276 ~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
|++.| .=.|..++..+++.|++ ..++|+.|-.
T Consensus 402 Pnl~V~~P~d~~e~~~~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 402 PNLVYLAPTTKEELIAMLEWALT---QHEHPVAIRV 434 (581)
T ss_pred CCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 44433 22378899888888874 2369999854
No 246
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=63.67 E-value=24 Score=43.55 Aligned_cols=113 Identities=13% Similarity=0.051 Sum_probs=63.0
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccc-cccccCCch
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTS-SERASASVD 267 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~-~~~~~~~~~ 267 (423)
+-+=.+.--+|.|.|.+ .+.-.++++..|=|.+|. .-++..|..-+.|||+|.-+-... ..+. .|.. ....
T Consensus 345 ~rhErsAafmAdGyAR~---TgkpgV~i~TsGPG~tN~---l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~i-Dq~~ 417 (1655)
T PLN02980 345 CFDERSLAFHALGYARG---SLKPAVVITSSGTAVSNL---LPAVVEASQDFVPLLLLTADRPPELQDAGANQAI-NQVN 417 (1655)
T ss_pred ccCcchHHHHHHHHHHH---hCCCEEEEEeCcHHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCccc-chhh
Confidence 33333445566676665 244455666667777664 456888999999999998765431 1110 1110 0111
Q ss_pred hhhhcCCCCeEEeeCCCHHH------HHHHHHHHHHHhhCC-CCcEEEEEEE
Q psy4881 268 YYTRGDYIPGIWVDGMDILA------VREAARFAVNHCRSD-KGPILLETAT 312 (423)
Q Consensus 268 ~~~~a~G~~~~~VdG~d~~~------v~~al~~A~~~ar~~-~gP~lIev~t 312 (423)
+.+ .+--..++|. ++++ +..++++|+..++.+ .||+.|++..
T Consensus 418 lf~-pvtK~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 418 HFG-SFVRFFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred HHH-hhhheeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 111 0101123332 3333 346778888777776 4999999973
No 247
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=63.42 E-value=1.1e+02 Score=30.06 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=55.2
Q ss_pred EEEEEeCCCc--cchhhHHHHHHHhHhcCCCEEEEEecCC-c--cccccccc-ccC-Cc-hhhh--hcCCCCeEEeeCCC
Q psy4881 215 VCFALYGDGA--ANQGQVFEVYNIAKLWNIPCIFVCENNG-Y--GMGTSSER-ASA-SV-DYYT--RGDYIPGIWVDGMD 284 (423)
Q Consensus 215 ~vv~~~GDGa--~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~--gi~~~~~~-~~~-~~-~~~~--~a~G~~~~~VdG~d 284 (423)
.++.++.||. .++|..-+.+.-|...++-+++|+.+|. . +|--..+. +.. .. .+.. ..|+.|++-|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 8999999999 8888766668888888999999998875 2 33211110 000 11 1111 35678876554 38
Q ss_pred HHHHHHHHHHHHH
Q psy4881 285 ILAVREAARFAVN 297 (423)
Q Consensus 285 ~~~v~~al~~A~~ 297 (423)
+.++-.++..+++
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 9999999888874
No 248
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=60.64 E-value=93 Score=27.70 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcC-CCEEEEEec-CCcccccccccccCCchhhhhcCC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWN-IPCIFVCEN-NGYGMGTSSERASASVDYYTRGDY 274 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LPvi~Vv~N-N~~gi~~~~~~~~~~~~~~~~a~G 274 (423)
+++|.|+|+. +. +++++...--. . ..++.+.+...++ +|+++.... ..+|...++.. +..+..- ..+
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~f~--~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~-~~~ 130 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFTFF--D-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDEAL-LRA 130 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHHHH--H-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHHHH-Hhc
Confidence 6667776665 43 66666664432 2 3467788888887 555554432 33333221111 1112211 113
Q ss_pred CCeEE-eeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 275 IPGIW-VDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 275 ~~~~~-VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
+|+.. +.=.|+.++...++.+++ ..++|.+|-
T Consensus 131 iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~ 163 (168)
T smart00861 131 IPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIR 163 (168)
T ss_pred CCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEE
Confidence 44332 223378899999998884 346897664
No 249
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=59.72 E-value=18 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy4881 341 DPISSLKDKILNASLVTPEELKKIDTEVK 369 (423)
Q Consensus 341 DPi~~~~~~L~~~g~~~~~~~~~i~~e~~ 369 (423)
+++..+++ |.+.|++|++|.++.++++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 34555554 46789999999998887753
No 250
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=59.44 E-value=69 Score=34.48 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=36.8
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecC
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
+.+-+-.+...+|-|.|... + ...+++..|=|+++. .-+|..|-..+.|||+|.-.-
T Consensus 43 v~~rhE~~A~~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~ 99 (539)
T TIGR03393 43 VGCANELNAAYAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAP 99 (539)
T ss_pred eccCCcccHHHHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCC
Confidence 43444445555566665542 3 245556678888775 234788889999999998643
No 251
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=59.06 E-value=1.3e+02 Score=30.45 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=52.1
Q ss_pred eeeecCCCCCC--cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH-HHhHhc--------CCCEEEEEecCCcc
Q psy4881 186 QLVTVTNQLVT--VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY-NIAKLW--------NIPCIFVCENNGYG 254 (423)
Q Consensus 186 ~~~~~sg~~g~--l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL-n~A~~~--------~LPvi~Vv~NN~~g 254 (423)
+++ ..|-.-+ +++|.|+|++ + .+++++.+.---+ + ..+|-+ +-++.+ ++|++++.-.-.++
T Consensus 52 R~~-n~gIaEq~~vg~AaGlA~~----G-~~pvv~~~~~~f~-~-ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~ 123 (327)
T CHL00144 52 RVL-DTPIAENSFTGMAIGAAMT----G-LRPIVEGMNMGFL-L-LAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGR 123 (327)
T ss_pred cEe-eccccHHHHHHHHHHHHHC----C-CEEEEEeehhhHH-H-HHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCC
Confidence 344 3444433 7777777775 3 3556554432111 1 234433 444444 67777763211111
Q ss_pred cccccccccCCchhhhhcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 255 MGTSSERASASVDYYTRGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
.... .. +-.+......+|+.+| .=.|+.+.+..++.|++ .++|++|-
T Consensus 124 ~~G~---tH-s~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 124 QLGA---EH-SQRLESYFQSVPGLQIVACSTPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred CCCc---cc-cccHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 1111 11 1122211114555422 11278888888888873 57999874
No 252
>PRK11032 hypothetical protein; Provisional
Probab=51.79 E-value=52 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEV 385 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p 385 (423)
|...++++.+.|-+|.+|++.+.+-++..+++..+....+..+
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~ 72 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEE 72 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6788999999999999999999999999999988776555443
No 253
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=41.92 E-value=1.5e+02 Score=32.73 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=60.8
Q ss_pred CCCCC--cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-ccccccccccCCchh
Q psy4881 192 NQLVT--VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDY 268 (423)
Q Consensus 192 g~~g~--l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~ 268 (423)
|-.-| +.+|.|+|.+ .-++||++-. .|-|-..-+-+.=.+..+|||+|+|.-.+. |...++..- .
T Consensus 364 GIAEQHAVT~AAGlA~~-----G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G-----~ 431 (627)
T COG1154 364 GIAEQHAVTFAAGLAAE-----GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG-----L 431 (627)
T ss_pred hhhHHHHHHHHHHHHhC-----CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc-----H
Confidence 33445 4445555543 4567777752 233322333345567799999999998775 555443321 1
Q ss_pred hhhcC--CCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 269 YTRGD--YIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 269 ~~~a~--G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
+..+| .+|.+.+ -=.|.+++...+..|+.+ .+||+.|-.
T Consensus 432 fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiRy 473 (627)
T COG1154 432 FDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIRY 473 (627)
T ss_pred HHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEEe
Confidence 12222 3555433 223788999999988863 458998854
No 254
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=40.77 E-value=47 Score=30.69 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcC
Q psy4881 344 SSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARAD 382 (423)
Q Consensus 344 ~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~ 382 (423)
..++..|+++|+++.++++.+.+.+..++ .+.+++|+..
T Consensus 4 ~Ale~ll~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~D 47 (185)
T TIGR01323 4 KALEQVLKSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVD 47 (185)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcC
Confidence 46889999999999999999988888764 3345555443
No 255
>PRK13683 hypothetical protein; Provisional
Probab=39.95 E-value=44 Score=27.19 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCC
Q psy4881 282 GMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 317 (423)
Q Consensus 282 G~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~g 317 (423)
-.|.+++|.-+..|++ ++.|.|||..|.+-.+
T Consensus 22 ~edA~alYq~I~~am~----sg~P~llELtCek~~~ 53 (87)
T PRK13683 22 AEDAEALYQQIRQAMR----SGNPRLLELTCEKVED 53 (87)
T ss_pred HHHHHHHHHHHHHHHh----cCCCcEEEEEecCcCC
Confidence 3478888888888884 6789999999988544
No 256
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=38.90 E-value=68 Score=31.82 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHHHhc---CCCCEEEEEeCCCc--cchhhHHHHHHHhH---------hcCCCEEEEEecCCc
Q psy4881 194 LVTVPLGVGIALAAKYS---GTKGVCFALYGDGA--ANQGQVFEVYNIAK---------LWNIPCIFVCENNGY 253 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~---~~~~~vv~~~GDGa--~~~G~~~EaLn~A~---------~~~LPvi~Vv~NN~~ 253 (423)
+|+||..+|..+.+.+. ..+.++|+|.--|+ ||+|.+ --|++|. ..+||.|.|+.|=-+
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~l-SLMQMaktsaAl~~l~ea~lpyIsVLt~PTt 207 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGIL-SLMQMAKTSAALKRLSEAGLPYISVLTDPTT 207 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHH-HHHHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 67888888888776542 24567777777777 677653 3244443 458999999988665
No 257
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=38.57 E-value=1.1e+02 Score=32.94 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=37.8
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEec
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCEN 250 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~N 250 (423)
++.+.+-.+..-+|.|.|.+. +.-.++++..|=|.++. .-++..|-..+.|||+|.-.
T Consensus 50 ~v~~~hE~~A~~aAdgyar~t---g~~~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 50 LHTHFDERSAGFLALGLAKAS---KRPVAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred EEeecCcccHHHHHHHHHHhh---CCCEEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 344445555555666666542 33345566668777764 35688899999999999754
No 258
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=37.98 E-value=69 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.4
Q ss_pred CEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc
Q psy4881 214 GVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY 253 (423)
Q Consensus 214 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~ 253 (423)
..||+++.+-....|..+| +..|...+.||+.+..+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3555555544477788888 99999999999999987664
No 259
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.75 E-value=74 Score=29.02 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=34.7
Q ss_pred chhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 266 VDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 266 ~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
--+.+||||..++-++|.+-+.+.+.++..++ +-+||..|+..+
T Consensus 23 V~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 23 VALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred hhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 34567999999999999866778777777775 578998887754
No 260
>KOG0369|consensus
Probab=36.52 E-value=78 Score=35.31 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=42.4
Q ss_pred CCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhh
Q psy4881 221 GDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCR 300 (423)
Q Consensus 221 GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar 300 (423)
-||-... ..||+.++..|++|||+=-- | +-|-.|.||- +..+++.+++++|...|+
T Consensus 166 TpgPitt--~~EA~eF~k~yG~PvI~KAA---y------------------GGGGRGmRvV-r~~e~vee~f~Ra~SEA~ 221 (1176)
T KOG0369|consen 166 TPGPITT--VEEALEFVKEYGLPVIIKAA---Y------------------GGGGRGMRVV-RSGEDVEEAFQRAYSEAL 221 (1176)
T ss_pred CCCCccc--HHHHHHHHHhcCCcEEEeec---c------------------cCCCcceEEe-echhhHHHHHHHHHHHHH
Confidence 3555554 58999999999999886321 1 1123334332 156677788877765554
Q ss_pred C--CCCcEEEEEEEec
Q psy4881 301 S--DKGPILLETATYR 314 (423)
Q Consensus 301 ~--~~gP~lIev~t~R 314 (423)
+ ++|-.|||=-..|
T Consensus 222 aaFGnG~~FvEkF~ek 237 (1176)
T KOG0369|consen 222 AAFGNGTLFVEKFLEK 237 (1176)
T ss_pred HhcCCceeeHHhhhcC
Confidence 4 5666666544433
No 261
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=34.85 E-value=2.5e+02 Score=33.56 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=63.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD 273 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~ 273 (423)
+.+++++|++.+ | .++..++--.++.- .+|.|-.++-..+|+++++.+=.+.- +.........|+.. |.-
T Consensus 62 ~A~~av~GA~~a----G--ara~T~TSs~GL~L--M~e~l~~~ag~~~P~Vi~va~R~~~~-~~~~i~~dh~Dv~~~R~~ 132 (1165)
T TIGR02176 62 GAAGAVHGALQT----G--ALTTTFTASQGLLL--MIPNMYKIAGELLPCVFHVSARAIAA-HALSIFGDHQDVMAARQT 132 (1165)
T ss_pred HHHHHHHhHhhc----C--CCEEEecChhHHHH--HHHHHHHHHhccCCEEEEEecCCCCC-CCCccCCCchHHHHhhcC
Confidence 456666665554 3 44544443333322 26778666656899888887643311 11111111123332 444
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
|+ +-+-..++.+.+.....|...|.+...|+++-..-+|. +|.
T Consensus 133 G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 133 GF--AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred Ce--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 55 33333488888887777877777788898877665543 564
No 262
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.43 E-value=1.1e+02 Score=26.76 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCchhhh-----hcCCCCe--EEeeCCCH-HHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 264 ASVDYYT-----RGDYIPG--IWVDGMDI-LAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 264 ~~~~~~~-----~a~G~~~--~~VdG~d~-~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
..|+|.+ +..|+.. ++|.|..+ ++=.+++++|++ +.+||+|-+|++
T Consensus 43 ~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~---eaegPVlayCrs 96 (130)
T COG3453 43 GQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD---EAEGPVLAYCRS 96 (130)
T ss_pred CCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH---HhCCCEEeeecC
Confidence 3456654 2336543 45554222 222345666766 368999999964
No 263
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=34.22 E-value=3.2e+02 Score=24.94 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHHhcCCC---CEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh
Q psy4881 194 LVTVPLGVGIALAAKYSGTK---GVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT 270 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~---~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~ 270 (423)
.|.+|+..|..++..++..+ +-+|++.| ++.... .+..+...+.|++++.-.|.- +.
T Consensus 100 ig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg-~~~~~~----~~~~~~~~~~P~l~~~g~~D~--------------~~- 159 (218)
T PF01738_consen 100 IGVVGFCWGGKLALLLAARDPRVDAAVSFYG-GSPPPP----PLEDAPKIKAPVLILFGENDP--------------FF- 159 (218)
T ss_dssp EEEEEETHHHHHHHHHHCCTTTSSEEEEES--SSSGGG----HHHHGGG--S-EEEEEETT-T--------------TS-
T ss_pred EEEEEEecchHHhhhhhhhccccceEEEEcC-CCCCCc----chhhhcccCCCEeecCccCCC--------------CC-
Confidence 34455556666666655443 45677777 222211 134455567777766543321 00
Q ss_pred hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCC
Q psy4881 271 RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPG 324 (423)
Q Consensus 271 ~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~ 324 (423)
+.+. .+.+.++++ +.+.+ +++.+|.+.+|.-..+.
T Consensus 160 -------------~~~~-~~~~~~~l~---~~~~~--~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 160 -------------PPEE-VEALEEALK---AAGVD--VEVHVYPGAGHGFANPS 194 (218)
T ss_dssp --------------HHH-HHHHHHHHH---CTTTT--EEEEEETT--TTTTSTT
T ss_pred -------------ChHH-HHHHHHHHH---hcCCc--EEEEECCCCcccccCCC
Confidence 1222 223344442 33334 58899999999876543
No 264
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.97 E-value=96 Score=26.25 Aligned_cols=39 Identities=26% Similarity=0.099 Sum_probs=19.1
Q ss_pred hcCCCCeE--EeeCCCH-HHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 271 RGDYIPGI--WVDGMDI-LAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 271 ~a~G~~~~--~VdG~d~-~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
++.|+..+ +|.+.++ .+-.+++.++++ ...+|+|++|.+
T Consensus 54 ~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 54 EALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp HHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred HHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCC
Confidence 34565543 5554332 233444555554 467999999964
No 265
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=32.65 E-value=82 Score=29.39 Aligned_cols=41 Identities=24% Similarity=0.539 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcCC
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARADP 383 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~p 383 (423)
...+++.|+++|+++.++++++.+.+...+ .+.+++|+..|
T Consensus 9 ~~al~~ll~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp 54 (188)
T PF02979_consen 9 VRALESLLIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDP 54 (188)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCH
Confidence 356899999999999999998887777662 44566666543
No 266
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=32.64 E-value=7.5 Score=33.56 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=19.1
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeec
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYS 60 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~ 60 (423)
.+|.+| |+++|.++..+....+-...++|.++.++.+
T Consensus 51 ~i~~~h--p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 51 VIPEDH--PLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp SSTTTS--TTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred ccCCCC--chhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 355555 5555555555444444444555555555433
No 267
>KOG1145|consensus
Probab=32.10 E-value=3.1e+02 Score=30.20 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccc---c---ccCCchhhhhcCC--CCeEEe---
Q psy4881 212 TKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSE---R---ASASVDYYTRGDY--IPGIWV--- 280 (423)
Q Consensus 212 ~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~---~---~~~~~~~~~~a~G--~~~~~V--- 280 (423)
.|-+|+++.+|-+.... ..|++.+|..-+.|+|+-++- +.++.. + .....++.-+.+| ++.+.|
T Consensus 225 tDIvVLVVAadDGVmpQ-T~EaIkhAk~A~VpiVvAinK----iDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMPQ-TLEAIKHAKSANVPIVVAINK----IDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred ccEEEEEEEccCCccHh-HHHHHHHHHhcCCCEEEEEec----cCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 57788889999887664 479999999999999988752 112211 0 0000111113343 333443
Q ss_pred eCCCHHHHHHHHH---HHHHHhhCCCCc---EEEEEEEecCCC
Q psy4881 281 DGMDILAVREAAR---FAVNHCRSDKGP---ILLETATYRYSG 317 (423)
Q Consensus 281 dG~d~~~v~~al~---~A~~~ar~~~gP---~lIev~t~R~~g 317 (423)
.|.+.+.|.+|+- +.++.-.+-+|| ++||..+.++.|
T Consensus 300 ~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRG 342 (683)
T ss_pred cCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCcc
Confidence 5778888888763 222211123455 688888887766
No 268
>PRK13685 hypothetical protein; Provisional
Probab=32.08 E-value=5.3e+02 Score=25.76 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHh---------cCCCCEEEEEeCCCccchhh-------HHHHHHHhHhcCCCEEEEEecCCcc-cc
Q psy4881 194 LVTVPLGVGIALAAKY---------SGTKGVCFALYGDGAANQGQ-------VFEVYNIAKLWNIPCIFVCENNGYG-MG 256 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~---------~~~~~~vv~~~GDGa~~~G~-------~~EaLn~A~~~~LPvi~Vv~NN~~g-i~ 256 (423)
++.++-++..|+..-. .+....+|.++-||.-+.|. ..++.+.+...+++|-.|-.-+..| +.
T Consensus 165 ~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~ 244 (326)
T PRK13685 165 RTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVE 244 (326)
T ss_pred CcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcC
Confidence 3446666665553311 11224577899999865431 2466778888899977766654332 11
Q ss_pred ccccccc--CCch-hhh--hcCCCCeEEeeCCCHHHHHHHHHHH
Q psy4881 257 TSSERAS--ASVD-YYT--RGDYIPGIWVDGMDILAVREAARFA 295 (423)
Q Consensus 257 ~~~~~~~--~~~~-~~~--~a~G~~~~~VdG~d~~~v~~al~~A 295 (423)
...+... ..+. ..+ ..-|-..+.++ +..++.+++++.
T Consensus 245 ~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~--~~~~L~~if~~I 286 (326)
T PRK13685 245 INGQRQPVPVDDESLKKIAQLSGGEFYTAA--SLEELRAVYATL 286 (326)
T ss_pred cCCceeeecCCHHHHHHHHHhcCCEEEEcC--CHHHHHHHHHHH
Confidence 1111110 0111 111 22355666776 777877776654
No 269
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=30.40 E-value=1.2e+02 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcc
Q psy4881 349 KILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDI 394 (423)
Q Consensus 349 ~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~v 394 (423)
.|...|++|.+|+.+|-+.-+. ++.......+.+++.+.++
T Consensus 10 ~l~~~~lFt~~EI~~IvkkR~~-----fEy~L~rr~~~~~Dfl~YI 50 (83)
T PF08640_consen 10 DLERKGLFTKEEIREIVKKRRD-----FEYKLQRRGKKKSDFLRYI 50 (83)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH-----HHHHHHcCCCCHHHHHHHH
Confidence 3567899999999999887665 6777777878887776654
No 270
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=28.83 E-value=2.4e+02 Score=23.27 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHhc---CCCCEEEEEeCCCccchh--hHHHHHHHhHhcCCCEEEEEecC
Q psy4881 195 VTVPLGVGIALAAKYS---GTKGVCFALYGDGAANQG--QVFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~---~~~~~vv~~~GDGa~~~G--~~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
+.+.-|+-.+...... ......+.+++||....+ ...+.+..+...++.+.+|-..+
T Consensus 80 t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 80 TNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred ccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC
Confidence 3455566555554433 245778899999997654 35677777777777766665443
No 271
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.66 E-value=2.7e+02 Score=25.91 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHH-HhcC---CCCEEEEEeCCC-ccchhhHHHHHHHhHhcCCCEEEEEe
Q psy4881 196 TVPLGVGIALAA-KYSG---TKGVCFALYGDG-AANQGQVFEVYNIAKLWNIPCIFVCE 249 (423)
Q Consensus 196 ~l~~A~GaA~a~-k~~~---~~~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvi~Vv~ 249 (423)
.++-|+-.|..+ +... ....+|+|+|++ ....|.+++....++..++.+-+|..
T Consensus 86 ~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 86 NFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred hHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 366666666533 2211 223677777777 57778887877777777777666643
No 272
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=26.87 E-value=1.7e+02 Score=30.70 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhhcCCC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTRGDYI 275 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~a~G~ 275 (423)
=+++.+.+.++..+.. +.++.+..||-+... -.++++.++.+.+++=+.+++-.+..|. ..+|.
T Consensus 111 Drg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~------aaya~rag~~v~Vl~P~g~vs~~k~~q~---------~~~ga 174 (411)
T COG0498 111 DRGMTVLVSLAKELGA-KTILCASSGNTGASA------AAYAARAGLKVFVLYPKGKVSPGKLAQM---------LTLGA 174 (411)
T ss_pred hhhHHHHHHHHHHhcC-CEEEEeCCchHHHHH------HHHhccCCCeEEEEecCCCCCHHHHHHH---------HhcCC
Confidence 3666677777666554 666777777765222 4678888999888887766533221111 23344
Q ss_pred CeEEeeCCCHHHHHHHHHHHH
Q psy4881 276 PGIWVDGMDILAVREAARFAV 296 (423)
Q Consensus 276 ~~~~VdG~d~~~v~~al~~A~ 296 (423)
+.+.|+| +.++..+.++++.
T Consensus 175 ~~i~v~G-~fDda~~~vk~~~ 194 (411)
T COG0498 175 HVIAVDG-NFDDAQELVKEAA 194 (411)
T ss_pred EEEEEcC-cHHHHHHHHHHHH
Confidence 5556665 4555555454444
No 273
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=26.59 E-value=4.9e+02 Score=23.61 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHhc-C--CCCEEEEEeCCCccc-hhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhhh
Q psy4881 196 TVPLGVGIALAAKYS-G--TKGVCFALYGDGAAN-QGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYTR 271 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~-~--~~~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~~ 271 (423)
.+.-|+-.|+..-.. . ..+.++.+++||+-. .+...+....++..++.|-+|-..+.. . .-..++ +
T Consensus 87 ~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~------~---~L~~ia-~ 156 (183)
T cd01453 87 SLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM------H---ICKEIC-K 156 (183)
T ss_pred hHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH------H---HHHHHH-H
Confidence 355555555433211 1 235588888898843 333446666777778876666543221 0 000111 3
Q ss_pred cCCCCeEEeeCCCHHHHHHHHHHH
Q psy4881 272 GDYIPGIWVDGMDILAVREAARFA 295 (423)
Q Consensus 272 a~G~~~~~VdG~d~~~v~~al~~A 295 (423)
+-|-..+.+. |.+++.+++.++
T Consensus 157 ~tgG~~~~~~--~~~~l~~~~~~~ 178 (183)
T cd01453 157 ATNGTYKVIL--DETHLKELLLEH 178 (183)
T ss_pred HhCCeeEeeC--CHHHHHHHHHhc
Confidence 3355566665 778888777664
No 274
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=24.79 E-value=5.2e+02 Score=28.01 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=58.8
Q ss_pred CCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccc---ccc---CCchhhhhcCC-----CCeEEee
Q psy4881 213 KGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSE---RAS---ASVDYYTRGDY-----IPGIWVD 281 (423)
Q Consensus 213 ~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~---~~~---~~~~~~~~a~G-----~~~~~Vd 281 (423)
|-.++++..|-++... ..||++.|...+.|+++.++ .. .++.. +.. ....+..+.|| ++.--..
T Consensus 80 DIaILVVa~dDGv~pQ-TiEAI~hak~a~vP~iVAiN--Ki--Dk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 80 DIAILVVAADDGVMPQ-TIEAINHAKAAGVPIVVAIN--KI--DKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred cEEEEEEEccCCcchh-HHHHHHHHHHCCCCEEEEEe--cc--cCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 6678888888887664 47999999999999887774 32 22211 000 01122223443 2222334
Q ss_pred CCCHHHHHHHHH---HHHHHhhCCCC---cEEEEEEEecCCCCC
Q psy4881 282 GMDILAVREAAR---FAVNHCRSDKG---PILLETATYRYSGHS 319 (423)
Q Consensus 282 G~d~~~v~~al~---~A~~~ar~~~g---P~lIev~t~R~~gH~ 319 (423)
|..+.+|..++. +.++.-..-++ -++||+...++.|+.
T Consensus 155 g~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~v 198 (509)
T COG0532 155 GEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPV 198 (509)
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCce
Confidence 666777666542 22221111123 389999999998863
No 275
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.57 E-value=1.6e+02 Score=26.87 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEec
Q psy4881 201 VGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCEN 250 (423)
Q Consensus 201 ~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~N 250 (423)
-+..++..++..+ +.+.++|-|+...+..-+...+|...++|++.-...
T Consensus 16 ~p~~aa~lLk~AK-RPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 16 SPKLVAMMIKRAK-RPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CHHHHHHHHHcCC-CcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 3445555555554 466688888875555566678888999998866654
No 276
>KOG4166|consensus
Probab=23.41 E-value=41 Score=35.44 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=34.8
Q ss_pred ccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCce
Q psy4881 23 YPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDV 65 (423)
Q Consensus 23 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 65 (423)
.|+- ||=+=+|+++.+.+++.-|.|||+....|+.+++.|.+
T Consensus 328 IPVt-ttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLi 369 (675)
T KOG4166|consen 328 IPVT-TTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLI 369 (675)
T ss_pred Ccce-ehhhcccCcCCCCchhhhhhcccccceehhhhhcccee
Confidence 3443 35677999999999999999999999999999965544
No 277
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.32 E-value=1.9e+02 Score=24.26 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=32.0
Q ss_pred CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC
Q psy4881 211 GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG 252 (423)
Q Consensus 211 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~ 252 (423)
.++..++++..-|...+ ..+++..|...+.|++.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 56778888888887766 57889999999999888876544
No 278
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=23.31 E-value=3.4e+02 Score=23.17 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHHHHh---cC-CC--CEEEEEeCCCccchh-hHHHHHHHhHhcCCCEEEEEecC
Q psy4881 194 LVTVPLGVGIALAAKY---SG-TK--GVCFALYGDGAANQG-QVFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~---~~-~~--~~vv~~~GDGa~~~G-~~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
.+.+..|+-.++..-. .+ .. +.++.++.||....+ ...+.+..+...+..+..|...+
T Consensus 80 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i~~~~ 144 (177)
T smart00327 80 GTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKRSGVKVFVVGVGN 144 (177)
T ss_pred CchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEccC
Confidence 3457777776665421 11 12 568999999986642 45677888888888877777654
No 279
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=23.08 E-value=2e+02 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=22.4
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy4881 348 DKILNASLVTPEELKKIDTEVKAEIDAV 375 (423)
Q Consensus 348 ~~L~~~g~~~~~~~~~i~~e~~~~v~~a 375 (423)
+..++.|.+|.++-++|.+.+.+..+..
T Consensus 25 dk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 25 DKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999888876554
No 280
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=23.00 E-value=2.2e+02 Score=20.40 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~ 374 (423)
+..|+..|.+.|+ +++++++--++.++.+.+
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 4568999999997 999888877777776543
No 281
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.62 E-value=2.6e+02 Score=25.82 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=34.8
Q ss_pred hcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC
Q psy4881 209 YSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG 252 (423)
Q Consensus 209 ~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~ 252 (423)
+..++..++++..-|.... ..+++..|...+.|+|.|..+++
T Consensus 108 ~~~~~Dv~I~iS~SG~t~~--~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 108 VGREGDVLLGISTSGNSGN--IIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred hCCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCC
Confidence 3467889999999998765 57889999999999999887654
No 282
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=22.11 E-value=3.7e+02 Score=22.65 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHHHhcC-----CCCEEEEEeCCCccchh-hHHHHHHHhHhcCCCEEEEEecC
Q psy4881 195 VTVPLGVGIALAAKYSG-----TKGVCFALYGDGAANQG-QVFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~-----~~~~vv~~~GDGa~~~G-~~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
+.+..|+-.|.-.-... ..+.++.++.||.-+.+ ...+.+......++++..|-..+
T Consensus 80 t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 80 TNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred ccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 34666665554433322 35678999999986553 35666777777788877775543
No 283
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.00 E-value=2.1e+02 Score=23.79 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=31.1
Q ss_pred CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc
Q psy4881 211 GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY 253 (423)
Q Consensus 211 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~ 253 (423)
.++..++++.--|...+ ..+++..|...+.|+|.|..|..-
T Consensus 46 ~~~d~vi~iS~sG~t~~--~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 46 TPGDVVIAISNSGETDE--LLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCCC
Confidence 56677777777776655 578899999999998888876553
No 284
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=21.88 E-value=1e+02 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.656 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCCHHHHHHH
Q psy4881 346 LKDKILNASLVTPEELKKI 364 (423)
Q Consensus 346 ~~~~L~~~g~~~~~~~~~i 364 (423)
.++.+++.|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5677789999999999876
No 285
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.61 E-value=1.6e+02 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC
Q psy4881 211 GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG 252 (423)
Q Consensus 211 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~ 252 (423)
.++..++++.-.|...+ ..|.+..|.+.+.|+|.|..+-.
T Consensus 52 ~~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCCCC
Confidence 46777888887887765 46889999999999977765433
No 286
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.47 E-value=2.6e+02 Score=26.04 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=35.6
Q ss_pred HhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC
Q psy4881 208 KYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG 252 (423)
Q Consensus 208 k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~ 252 (423)
....++..++++..-|...+ ..+++..|...+.|+|.+..|.+
T Consensus 109 ~~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 44567888999998888776 57899999999999998887655
No 287
>PLN02522 ATP citrate (pro-S)-lyase
Probab=21.39 E-value=4.6e+02 Score=29.07 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCCCEEEEEeCC-CccchhhHHHHHHHhHhcCCCEEEEEecCCcc-ccc-----ccccccCCc----hhhh---hcCCCC
Q psy4881 211 GTKGVCFALYGD-GAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGT-----SSERASASV----DYYT---RGDYIP 276 (423)
Q Consensus 211 ~~~~~vv~~~GD-Ga~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~-----~~~~~~~~~----~~~~---~a~G~~ 276 (423)
.|+-.+|++.|. |.-.+-.|.|++.-+. .+.|||.++---.-. ... +........ .-.. +..|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv- 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA- 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC-
Confidence 577789999999 8887767777665544 688988887522110 000 011111111 1111 23365
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHhh
Q psy4881 277 GIWVDGMDILAVREAARFAVNHCR 300 (423)
Q Consensus 277 ~~~VdG~d~~~v~~al~~A~~~ar 300 (423)
++++ +++++.++++++++...
T Consensus 298 -~vv~--s~~El~~~~~~~~~~~~ 318 (608)
T PLN02522 298 -IVPT--SFEALEAAIKETFEKLV 318 (608)
T ss_pred -eEeC--CHHHHHHHHHHHHHHHH
Confidence 6777 89999999999887543
No 288
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=21.30 E-value=1.6e+02 Score=23.57 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4881 340 RDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377 (423)
Q Consensus 340 ~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~ 377 (423)
++=+.-+-+.|++.++++++|.+.|..+-....+.|..
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~ 52 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARV 52 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHH
Confidence 46677788899999999999999998864333344433
No 289
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.29 E-value=2.1e+02 Score=25.65 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy4881 341 DPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARA 381 (423)
Q Consensus 341 DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~ 381 (423)
+-+...++++.+.|-+|.+|++.+.+-++..+++..++-..
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999888777655
No 290
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=21.02 E-value=2.2e+02 Score=24.23 Aligned_cols=88 Identities=16% Similarity=-0.017 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHhcCC-CCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh--hc
Q psy4881 196 TVPLGVGIALAAKYSGT-KGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT--RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~-~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~--~a 272 (423)
.+..|+-.|.-.--..+ .+..+.++.||.-+. ...+.+..+...++++.+|........ ...+.. +.
T Consensus 81 ~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~-~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~ 150 (172)
T PF13519_consen 81 NLYDALQEAAKMLASSDNRRRAIVLITDGEDNS-SDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEA 150 (172)
T ss_dssp -HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC-HHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc-chhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHh
Confidence 45555555543222222 567889999998664 345667777777777666665444211 011111 22
Q ss_pred CCCCeEEeeCCCHHHHHHHHHH
Q psy4881 273 DYIPGIWVDGMDILAVREAARF 294 (423)
Q Consensus 273 ~G~~~~~VdG~d~~~v~~al~~ 294 (423)
-|...+.++ .+.+++.+++++
T Consensus 151 tgG~~~~~~-~~~~~l~~~~~~ 171 (172)
T PF13519_consen 151 TGGRYFHVD-NDPEDLDDAFQQ 171 (172)
T ss_dssp TEEEEEEE--SSSHHHHHHHHH
T ss_pred cCCEEEEec-CCHHHHHHHHhc
Confidence 344456663 255777777654
No 291
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=20.89 E-value=6.9e+02 Score=23.35 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcCCCCeEEeeC
Q psy4881 235 NIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGDYIPGIWVDG 282 (423)
Q Consensus 235 n~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~G~~~~~VdG 282 (423)
..|...++|+++++-++. +. ..... +.+|...+.+++
T Consensus 67 ~~a~~~g~~~~v~~p~~~---~~--------~~~~~~~~~Ga~v~~~~~ 104 (244)
T cd00640 67 AAAARLGLKCTIVMPEGA---SP--------EKVAQMRALGAEVVLVPG 104 (244)
T ss_pred HHHHHcCCCEEEEECCCC---CH--------HHHHHHHHCCCEEEEECC
Confidence 345568888887776553 10 11111 456777777765
No 292
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.85 E-value=2.3e+02 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC
Q psy4881 211 GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG 252 (423)
Q Consensus 211 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~ 252 (423)
+++..++++.-.|...+ ..+++..|...+.++|.|..|..
T Consensus 45 ~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 45 DEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 56778888888888776 56889999999999888877643
No 293
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.75 E-value=7.6e+02 Score=23.71 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccC--Cch-----hh
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASA--SVD-----YY 269 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~--~~~-----~~ 269 (423)
+--.+|-.++.++.+.+--+|+-+..|++--+ ...|...++|++++=-.+..+.....+.+.+ ... ..
T Consensus 95 ~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA-----~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~ 169 (238)
T PRK08558 95 FLRLIAPVVAERFMGLRVDVVLTAATDGIPLA-----VAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLP 169 (238)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEECcccHHHH-----HHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEec
Confidence 44578888998887654345555666665543 4567889999887655544443222111100 000 01
Q ss_pred hhc--CCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 270 TRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 270 ~~a--~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
+.+ -|-..+-|| |+.+--.++..+++.+++. |..++.+.+
T Consensus 170 ~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~-ga~vvgv~v 211 (238)
T PRK08558 170 ASALKKGDRVLIVD--DIIRSGETQRALLDLARQA-GADVVGVFF 211 (238)
T ss_pred HHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHc-CCEEEEEEE
Confidence 122 266678888 7766666677676666654 445555544
No 294
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.69 E-value=2.3e+02 Score=26.23 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=34.9
Q ss_pred hcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC
Q psy4881 209 YSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG 252 (423)
Q Consensus 209 ~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~ 252 (423)
...++..++++...|.... ..+++..|...+.|+|.|..+++
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~--~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSAN--VIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred hCCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 3468889999999998765 57889999999999999887654
No 295
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.38 E-value=2.1e+02 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEe
Q psy4881 211 GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCE 249 (423)
Q Consensus 211 ~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~ 249 (423)
.++..++++.-.|...+ ..+++..|...+.|+|.|..
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeC
Confidence 45556666666666655 35667777777777766663
No 296
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=20.26 E-value=3.4e+02 Score=23.85 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHhcC-CCCEEEEEeCCCccchhh--HHHHHHHhHhcCCCEEEEEecC
Q psy4881 195 VTVPLGVGIALAAKYSG-TKGVCFALYGDGAANQGQ--VFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~-~~~~vv~~~GDGa~~~G~--~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
+.+..|+-.|+..-... ..+.+|.++.||..+.|. ..+....+...+++|..|-.-+
T Consensus 83 T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 83 TAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 34555555444332222 235789999999866553 2344555666788776665543
No 297
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=20.19 E-value=3.5e+02 Score=21.48 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred EEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 278 IWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 278 ~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
-++.| +.++|.++++++..++.+..+=+++++..-+.
T Consensus 41 T~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 41 TQLRG-DEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp EEEEC-BHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred EEEEC-CHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 47788 79999999999999988765448888877664
Done!