Query psy4881
Match_columns 423
No_of_seqs 472 out of 3490
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:13:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_A PDHE1-A type I, pyruvat 100.0 6.6E-49 2.3E-53 397.1 24.1 220 190-409 138-358 (365)
2 1w85_A Pyruvate dehydrogenase 100.0 1.9E-47 6.5E-52 387.1 23.6 216 190-406 140-359 (368)
3 1qs0_A 2-oxoisovalerate dehydr 100.0 8.4E-47 2.9E-51 386.5 24.5 218 188-406 177-404 (407)
4 1umd_A E1-alpha, 2-OXO acid de 100.0 1.1E-45 3.8E-50 374.4 24.0 216 190-406 142-360 (367)
5 2bfd_A 2-oxoisovalerate dehydr 100.0 1.7E-44 5.7E-49 369.2 21.4 217 188-404 158-377 (400)
6 2yic_A 2-oxoglutarate decarbox 100.0 3.2E-36 1.1E-40 332.3 16.9 189 192-381 246-450 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 1.8E-35 6.1E-40 333.5 17.4 191 191-382 489-696 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 1E-34 3.4E-39 322.1 15.2 191 190-381 320-522 (933)
9 4feg_A Pyruvate oxidase; carba 100.0 7.7E-32 2.6E-36 288.9 10.5 306 22-361 250-597 (603)
10 1v5e_A Pyruvate oxidase; oxido 99.9 1E-24 3.5E-29 233.1 11.0 263 22-316 243-541 (590)
11 1gpu_A Transketolase; transfer 99.9 3.8E-24 1.3E-28 232.1 14.0 152 187-343 111-281 (680)
12 2e6k_A Transketolase; structur 99.9 7.2E-25 2.5E-29 236.8 7.9 151 187-344 113-282 (651)
13 1t9b_A Acetolactate synthase, 99.9 9E-25 3.1E-29 237.1 5.7 263 22-317 330-640 (677)
14 1r9j_A Transketolase; domains, 99.9 4.1E-23 1.4E-27 223.7 17.8 148 187-338 111-277 (673)
15 1ybh_A Acetolactate synthase, 99.9 3.1E-24 1.1E-28 229.3 7.2 263 22-317 252-561 (590)
16 2pan_A Glyoxylate carboligase; 99.9 2.9E-24 9.8E-29 230.6 6.7 266 22-316 266-582 (616)
17 2pgn_A Cyclohexane-1,2-dione h 99.9 2.3E-24 7.9E-29 230.3 4.5 263 22-318 245-551 (589)
18 3eya_A Pyruvate dehydrogenase 99.9 8.3E-24 2.9E-28 224.1 8.2 256 23-316 240-531 (549)
19 3rim_A Transketolase, TK; TPP, 99.9 9.6E-23 3.3E-27 220.7 16.3 132 187-322 128-277 (700)
20 1q6z_A BFD, BFDC, benzoylforma 99.9 8.4E-24 2.9E-28 222.9 7.3 259 22-314 241-525 (528)
21 2r8o_A Transketolase 1, TK 1; 99.9 7E-23 2.4E-27 221.9 14.6 148 187-338 109-275 (669)
22 2o1x_A 1-deoxy-D-xylulose-5-ph 99.9 1.5E-23 5.2E-28 225.7 9.1 211 80-319 32-294 (629)
23 2o1s_A 1-deoxy-D-xylulose-5-ph 99.9 3.2E-23 1.1E-27 222.9 10.9 211 80-321 30-291 (621)
24 3uk1_A Transketolase; structur 99.9 1.5E-22 5.2E-27 219.7 14.7 146 186-336 149-313 (711)
25 1ozh_A ALS, acetolactate synth 99.9 3.5E-23 1.2E-27 220.2 8.2 258 22-315 247-544 (566)
26 2uz1_A Benzaldehyde lyase; thi 99.9 2.5E-23 8.6E-28 221.0 7.1 259 21-314 243-546 (563)
27 3kom_A Transketolase; rossmann 99.9 3.8E-22 1.3E-26 215.5 16.2 147 186-336 110-275 (663)
28 1itz_A Transketolase; calvin c 99.9 5.6E-22 1.9E-26 214.9 14.0 148 187-338 122-289 (675)
29 3l84_A Transketolase; TKT, str 99.9 9.2E-22 3.1E-26 211.3 15.2 130 187-321 109-249 (632)
30 3m49_A Transketolase; alpha-be 99.9 1.1E-21 3.7E-26 212.5 15.7 147 187-337 135-300 (690)
31 2iht_A Carboxyethylarginine sy 99.9 1.7E-22 5.9E-27 215.0 7.4 211 91-314 311-561 (573)
32 1ovm_A Indole-3-pyruvate decar 99.9 7.6E-22 2.6E-26 209.0 11.1 261 30-314 244-532 (552)
33 3mos_A Transketolase, TK; thia 99.9 2E-21 7E-26 208.5 13.8 130 189-324 118-252 (616)
34 2vbi_A Pyruvate decarboxylase; 99.9 6.3E-22 2.2E-26 210.3 8.9 260 22-314 249-533 (566)
35 2vk8_A Pyruvate decarboxylase 99.8 5.2E-22 1.8E-26 210.8 7.1 211 91-314 302-542 (563)
36 2vbf_A Branched-chain alpha-ke 99.8 3.2E-21 1.1E-25 205.1 12.4 210 91-314 319-551 (570)
37 2c31_A Oxalyl-COA decarboxylas 99.8 1E-21 3.6E-26 208.8 7.4 210 92-315 299-548 (568)
38 2q28_A Oxalyl-COA decarboxylas 99.8 2.7E-21 9.2E-26 205.4 10.1 213 91-316 294-546 (564)
39 2wvg_A PDC, pyruvate decarboxy 99.8 4.3E-21 1.5E-25 204.1 10.0 211 91-314 300-541 (568)
40 2nxw_A Phenyl-3-pyruvate decar 99.8 6.4E-21 2.2E-25 202.7 9.2 158 141-314 372-542 (565)
41 2x7j_A 2-succinyl-5-enolpyruvy 99.8 9.2E-22 3.1E-26 210.8 0.5 208 94-314 336-580 (604)
42 3hww_A 2-succinyl-5-enolpyruvy 99.8 6.3E-21 2.1E-25 202.4 5.1 207 93-314 304-539 (556)
43 3lq1_A 2-succinyl-5-enolpyruvy 99.8 1.6E-20 5.4E-25 200.2 4.4 208 92-314 314-560 (578)
44 2qtc_A Pyruvate dehydrogenase 99.8 3.1E-19 1E-23 197.6 13.9 149 187-338 187-422 (886)
45 3fnv_A CDGSH iron sulfur domai 99.6 3.1E-16 1.1E-20 121.8 1.7 68 51-118 15-83 (83)
46 3s2r_A AT5G51720/MIO24_14; red 99.6 3E-16 1E-20 121.4 0.7 63 52-114 18-81 (83)
47 4ezf_A Mitoneet, CDGSH iron-su 99.5 8.3E-16 2.8E-20 117.8 1.8 68 50-117 8-76 (77)
48 2c42_A Pyruvate-ferredoxin oxi 99.3 6E-12 2.1E-16 143.9 13.0 166 143-315 814-1071(1231)
49 3ahc_A Phosphoketolase, xylulo 99.2 1.2E-11 4E-16 135.5 9.6 126 187-316 170-322 (845)
50 3ew0_A Mitoneet, CDGSH iron su 99.2 2.5E-12 8.4E-17 100.7 1.8 67 50-117 12-79 (80)
51 3tbn_A Putative uncharacterize 97.1 0.00018 6.3E-09 57.0 2.4 50 67-123 19-68 (87)
52 3tbo_A Zinc finger, CDGSH-type 96.7 0.00028 9.7E-09 52.1 0.1 25 78-102 21-45 (60)
53 3tbm_A Putative uncharacterize 96.6 0.00036 1.2E-08 53.1 0.3 26 77-102 39-64 (69)
54 3tbn_A Putative uncharacterize 96.4 0.00094 3.2E-08 52.9 1.3 38 61-99 49-86 (87)
55 1yd7_A 2-keto acid:ferredoxin 92.0 0.19 6.5E-06 50.6 6.1 108 200-313 76-188 (395)
56 1ozh_A ALS, acetolactate synth 91.5 0.54 1.9E-05 49.3 9.2 154 145-313 14-170 (566)
57 2pgn_A Cyclohexane-1,2-dione h 91.4 1.2 4.1E-05 46.8 11.8 110 195-313 54-165 (589)
58 3kom_A Transketolase; rossmann 91.2 2.8 9.7E-05 44.9 14.5 100 196-309 415-518 (663)
59 1ybh_A Acetolactate synthase, 90.6 0.8 2.7E-05 48.2 9.5 112 192-313 58-172 (590)
60 2wvg_A PDC, pyruvate decarboxy 90.4 1.1 3.9E-05 46.7 10.4 118 187-313 44-169 (568)
61 2uz1_A Benzaldehyde lyase; thi 90.2 1 3.5E-05 47.0 9.8 117 188-313 45-164 (563)
62 2iht_A Carboxyethylarginine sy 89.7 1 3.5E-05 47.2 9.3 118 188-314 52-172 (573)
63 2vbi_A Pyruvate decarboxylase; 89.4 1.1 3.8E-05 46.8 9.3 118 187-313 44-169 (566)
64 1t9b_A Acetolactate synthase, 89.2 1.2 4.1E-05 47.9 9.6 112 191-312 127-241 (677)
65 3mos_A Transketolase, TK; thia 89.2 2 6.7E-05 45.7 11.1 100 196-309 367-469 (616)
66 2r8o_A Transketolase 1, TK 1; 88.8 2.2 7.4E-05 45.9 11.2 99 197-309 415-517 (669)
67 3eya_A Pyruvate dehydrogenase 88.6 1.1 3.9E-05 46.5 8.7 117 187-313 44-162 (549)
68 1v5e_A Pyruvate oxidase; oxido 88.6 1.1 3.9E-05 47.1 8.7 114 188-312 47-163 (590)
69 2e6k_A Transketolase; structur 88.2 2.4 8E-05 45.4 10.9 101 196-310 409-513 (651)
70 4feg_A Pyruvate oxidase; carba 87.6 1.2 4.1E-05 47.0 8.2 116 187-312 53-170 (603)
71 2pan_A Glyoxylate carboligase; 87.2 2.2 7.5E-05 45.0 9.9 115 190-313 71-188 (616)
72 2c31_A Oxalyl-COA decarboxylas 87.2 1.1 3.8E-05 46.8 7.5 118 188-313 51-171 (568)
73 1itz_A Transketolase; calvin c 87.1 2.9 9.9E-05 44.9 10.9 100 197-310 427-531 (675)
74 2q28_A Oxalyl-COA decarboxylas 86.8 1.2 4.1E-05 46.5 7.5 119 187-313 48-169 (564)
75 3l84_A Transketolase; TKT, str 86.6 2.2 7.4E-05 45.6 9.5 100 196-310 394-497 (632)
76 1gpu_A Transketolase; transfer 86.2 2.7 9.4E-05 45.1 10.1 99 197-309 422-525 (680)
77 2nxw_A Phenyl-3-pyruvate decar 86.1 1.7 5.7E-05 45.5 8.2 116 190-313 65-186 (565)
78 2o1s_A 1-deoxy-D-xylulose-5-ph 84.9 3.9 0.00013 43.4 10.5 100 196-310 373-476 (621)
79 2ozl_B PDHE1-B, pyruvate dehyd 84.7 2.5 8.5E-05 41.5 8.2 97 196-310 74-183 (341)
80 2x7j_A 2-succinyl-5-enolpyruvy 84.6 2.5 8.4E-05 44.6 8.7 117 187-313 72-198 (604)
81 1r9j_A Transketolase; domains, 84.5 4.9 0.00017 43.1 11.1 100 196-309 414-517 (673)
82 3m49_A Transketolase; alpha-be 82.6 6.8 0.00023 42.2 11.2 100 196-309 439-542 (690)
83 1q6z_A BFD, BFDC, benzoylforma 81.8 3 0.0001 43.0 7.9 119 187-314 41-162 (528)
84 1qs0_B 2-oxoisovalerate dehydr 80.6 3.4 0.00012 40.3 7.3 98 196-310 64-173 (338)
85 3lq1_A 2-succinyl-5-enolpyruvy 80.5 3.9 0.00013 42.8 8.2 110 195-312 60-177 (578)
86 1ik6_A Pyruvate dehydrogenase; 80.1 5.3 0.00018 39.6 8.7 96 196-309 110-218 (369)
87 2vbf_A Branched-chain alpha-ke 79.8 3.6 0.00012 42.9 7.7 117 187-313 66-190 (570)
88 2vk8_A Pyruvate decarboxylase 79.7 2.8 9.5E-05 43.7 6.8 110 195-313 53-170 (563)
89 3uk1_A Transketolase; structur 79.4 6.3 0.00022 42.6 9.6 99 196-309 460-562 (711)
90 1w85_B Pyruvate dehydrogenase 77.9 5.4 0.00019 38.6 7.8 97 196-309 62-170 (324)
91 1umd_B E1-beta, 2-OXO acid deh 77.1 9.5 0.00032 36.8 9.3 97 196-309 63-171 (324)
92 2o1x_A 1-deoxy-D-xylulose-5-ph 76.8 4.4 0.00015 43.0 7.4 99 196-310 376-478 (629)
93 3rim_A Transketolase, TK; TPP, 75.3 13 0.00045 40.0 10.6 100 196-309 444-549 (700)
94 1ovm_A Indole-3-pyruvate decar 74.9 5.1 0.00018 41.5 7.1 117 187-313 46-170 (552)
95 2bfd_B 2-oxoisovalerate dehydr 73.9 9.1 0.00031 37.3 8.3 98 196-310 79-189 (342)
96 4hhu_A OR280; engineered prote 73.4 25 0.00084 29.2 9.3 33 274-306 83-115 (170)
97 2c42_A Pyruvate-ferredoxin oxi 63.1 14 0.00047 42.5 7.9 110 195-319 65-178 (1231)
98 3hww_A 2-succinyl-5-enolpyruvy 61.4 20 0.00067 37.2 8.2 109 194-312 56-170 (556)
99 2zzd_B Thiocyanate hydrolase s 54.7 17 0.00057 31.8 5.2 37 332-374 108-144 (157)
100 2kl8_A OR15; structural genomi 49.8 21 0.00073 26.4 4.3 29 278-306 5-33 (85)
101 4hhu_A OR280; engineered prote 43.1 23 0.00077 29.5 3.9 94 274-380 2-113 (170)
102 2jgd_A 2-oxoglutarate dehydrog 40.5 1E+02 0.0036 34.2 10.0 109 190-308 656-775 (933)
103 3qyh_A CO-type nitrIle hydrata 39.2 28 0.00094 31.9 4.2 41 343-383 40-85 (226)
104 2yic_A 2-oxoglutarate decarbox 39.1 1E+02 0.0034 34.0 9.5 108 190-308 588-707 (868)
105 3hyn_A Putative signal transdu 32.2 42 0.0014 30.0 4.2 45 204-250 72-118 (189)
106 3hht_A NitrIle hydratase alpha 31.6 39 0.0013 30.8 3.9 40 343-382 29-73 (216)
107 2xt6_A 2-oxoglutarate decarbox 31.4 1.5E+02 0.0051 33.7 9.5 108 190-308 833-952 (1113)
108 2x5n_A SPRPN10, 26S proteasome 31.0 76 0.0026 27.9 5.9 55 194-248 83-142 (192)
109 1ugp_A NitrIle hydratase alpha 30.7 52 0.0018 29.6 4.5 41 343-383 20-65 (203)
110 3cf4_G Acetyl-COA decarboxylas 30.3 7.3 0.00025 33.9 -1.1 37 22-60 74-117 (170)
111 3ibs_A Conserved hypothetical 29.9 46 0.0016 29.0 4.2 58 194-251 91-149 (218)
112 1abz_A Alpha-T-alpha, ATA; de 29.6 34 0.0012 21.9 2.3 26 348-373 13-38 (40)
113 3a8g_A NitrIle hydratase subun 26.7 41 0.0014 30.5 3.1 40 344-383 24-68 (207)
114 4fm4_A NitrIle hydratase alpha 26.4 47 0.0016 30.1 3.4 40 343-382 13-57 (209)
115 2khz_A C-MYC-responsive protei 25.3 83 0.0028 27.0 4.9 35 214-251 79-113 (165)
116 1use_A VAsp, vasodilator-stimu 25.3 1E+02 0.0034 21.1 4.1 17 330-348 6-22 (45)
117 3hht_B NitrIle hydratase beta 21.1 1.6E+02 0.0055 27.1 6.1 30 332-367 72-101 (229)
No 1
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=6.6e-49 Score=397.09 Aligned_cols=220 Identities=61% Similarity=1.039 Sum_probs=207.0
Q ss_pred cCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchh
Q psy4881 190 VTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~ 268 (423)
.+|.+| ++|+|+|+|+|.++++++++|||++|||++++|.++|+||+|+.|+||+||||+||+|||+++..+.+..++|
T Consensus 138 ~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~ 217 (365)
T 2ozl_A 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDY 217 (365)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCG
T ss_pred CcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCH
Confidence 345555 5999999999999999999999999999999999999999999999999999999999999987776667889
Q ss_pred hhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHHH
Q psy4881 269 YTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKD 348 (423)
Q Consensus 269 ~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~~ 348 (423)
+++++|+++++|||+|+++|++++++|++++|+++||+|||+.|||++||+++|++..||+++|++.|++.+||+.+|++
T Consensus 218 ~~ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~ 297 (365)
T 2ozl_A 218 YKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKD 297 (365)
T ss_dssp GGTTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988789999999999866899999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCccccccCCCC
Q psy4881 349 KILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIRGTTPF 409 (423)
Q Consensus 349 ~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~~~~~~~~~~ 409 (423)
+|+++|++|++++++|+++++++|++++++|+++|.|+++++|+|||++.++...+++.+|
T Consensus 298 ~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~~ 358 (365)
T 2ozl_A 298 RMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQW 358 (365)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCSSSSSCCCEEEECSBTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCCChhhhcccchh
Confidence 9999999999999999999999999999999999999999999999999888777777666
No 2
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=1.9e-47 Score=387.07 Aligned_cols=216 Identities=30% Similarity=0.430 Sum_probs=197.4
Q ss_pred cCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchh
Q psy4881 190 VTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~ 268 (423)
.+|.+| ++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+|+.|+||+||||+||+|+++++.....+.+++
T Consensus 140 ~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~ 219 (368)
T 1w85_A 140 PQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTL 219 (368)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCS
T ss_pred CccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCH
Confidence 455566 5999999999999999999999999999999999999999999999999999999999999887766666788
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC-CCCCCCCcCChhHHHHHHhcCChHHH
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS-MSDPGTSYRTRDEIQEVRQTRDPISS 345 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~-~~D~~~~YR~~~e~~~~~~~~DPi~~ 345 (423)
++ ++||+++++|||+|+++|++++++|++++|+++||+|||+.|||++||+ ++|+++.||+++|++.|++ +|||.+
T Consensus 220 ~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~ 298 (368)
T 1w85_A 220 AQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVR 298 (368)
T ss_dssp GGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHH
T ss_pred HHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHH
Confidence 87 5689999999999999999999999999999999999999999999999 9998889999999999984 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCccccccC
Q psy4881 346 LKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIRGT 406 (423)
Q Consensus 346 ~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~~~~~~~ 406 (423)
|+++|+++|++|++++++|+++++++|++++++|+++|.|+++++++|||++.++.+.+++
T Consensus 299 ~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~l~~q~ 359 (368)
T 1w85_A 299 FRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQY 359 (368)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888877654
No 3
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=8.4e-47 Score=386.53 Aligned_cols=218 Identities=28% Similarity=0.385 Sum_probs=202.8
Q ss_pred eecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccccccccccc-CC
Q psy4881 188 VTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERAS-AS 265 (423)
Q Consensus 188 ~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~-~~ 265 (423)
+..+|.+| ++|+|+|+|+|.|+++++++|||++|||++++|.++|+||+|++|+||+||||+||+|+++++..+.. ..
T Consensus 177 ~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~ 256 (407)
T 1qs0_A 177 FTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGES 256 (407)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTT
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCC
Confidence 33456666 59999999999999999999999999999999999999999999999999999999999998877665 46
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChH
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPI 343 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi 343 (423)
++|++ ++||+++++|||+|+++|++++++|++++|+++||+|||+.|||++||+.+|+++.||+++|++.|+ .+|||
T Consensus 257 ~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi 335 (407)
T 1qs0_A 257 TTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPI 335 (407)
T ss_dssp CCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHH
T ss_pred CCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHH
Confidence 78876 5789999999999999999999999999999999999999999999999999888999999999998 59999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHc------CCCCChhhhhhccccCCCccccccC
Q psy4881 344 SSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARA------DPEVGLDELTGDIYAVPLETDIRGT 406 (423)
Q Consensus 344 ~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~------~p~p~~~~~~~~vy~~~~~~~~~~~ 406 (423)
.+|+++|+++|++|++++++|+++++++|++++++|++ +|.|+++++|+|||++.++++.+++
T Consensus 336 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~~q~ 404 (407)
T 1qs0_A 336 ARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQR 404 (407)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHhhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999998 6899999999999999988877654
No 4
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.1e-45 Score=374.38 Aligned_cols=216 Identities=29% Similarity=0.442 Sum_probs=202.0
Q ss_pred cCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchh
Q psy4881 190 VTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDY 268 (423)
Q Consensus 190 ~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~ 268 (423)
++|.+| ++|+|+|+|+|+|+++++++|||++|||++++|.++|+|++|+.|++|+|+||+||+|+|+++.......++|
T Consensus 142 ~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~ 221 (367)
T 1umd_A 142 VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTI 221 (367)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCS
T ss_pred CCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCH
Confidence 445555 6999999999999999999999999999999999999999999999999999999999998877665566777
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHH
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSL 346 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~ 346 (423)
.+ +++|+++++|||+|+.++++++++|++++++++||+|||+.|+|++||+.+|+++.||+++|++.|+ ++||+.+|
T Consensus 222 ~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~ 300 (367)
T 1umd_A 222 ADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRF 300 (367)
T ss_dssp GGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHH
Confidence 77 5789999999999999999999999999999999999999999999999999888999999999998 48999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCccccccC
Q psy4881 347 KDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIRGT 406 (423)
Q Consensus 347 ~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~~~~~~~ 406 (423)
+++|+++|++|++++++|+++++++|++++++|+++|.|+++++|+|||++.++++.+++
T Consensus 301 ~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~ 360 (367)
T 1umd_A 301 RRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQE 360 (367)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCCChhHHHHH
Confidence 999999999999999999999999999999999999999999999999999888877654
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=1.7e-44 Score=369.22 Aligned_cols=217 Identities=29% Similarity=0.443 Sum_probs=182.2
Q ss_pred eecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 188 VTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 188 ~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
...+|.+| ++|.|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.|+||+|+||+||+|+++++.......+
T Consensus 158 ~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~ 237 (400)
T 2bfd_A 158 VTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGD 237 (400)
T ss_dssp CCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSS
T ss_pred cccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCC
Confidence 43556666 49999999999999999999999999999999999999999999999999999999999999877766667
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHH
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPIS 344 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~ 344 (423)
++++ ++||+++++|||+|+++|++|+++|++++|+++||+|||+.|||..||+++|+++.||+++|++.|++..|||.
T Consensus 238 d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~ 317 (400)
T 2bfd_A 238 GIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPIS 317 (400)
T ss_dssp TTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHH
T ss_pred CHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHH
Confidence 8877 57899999999999999999999999999999999999999999999999998888999999999986558999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccccCCCccccc
Q psy4881 345 SLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIR 404 (423)
Q Consensus 345 ~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~p~p~~~~~~~~vy~~~~~~~~~ 404 (423)
+++++|++.|+++++++++++++++++|++++++|+++|.|++++++++||++.++.+.+
T Consensus 318 ~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~ 377 (400)
T 2bfd_A 318 RLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRK 377 (400)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHH
T ss_pred HHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999987766554
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=3.2e-36 Score=332.28 Aligned_cols=189 Identities=21% Similarity=0.220 Sum_probs=171.4
Q ss_pred CCCCCcHHHHHHHHHHHhcC----------CCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCC---EEEEEecCCccccc
Q psy4881 192 NQLVTVPLGVGIALAAKYSG----------TKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGT 257 (423)
Q Consensus 192 g~~g~l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~ 257 (423)
+.+.++|.|+|+|+|.|+.+ .+.+++|++|||++ ++|.+||+||+|+.|+|| +|+||+||+|||++
T Consensus 246 ~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st 325 (868)
T 2yic_A 246 HLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTT 325 (868)
T ss_dssp STTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTB
T ss_pred cccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccccc
Confidence 33346999999999999864 66799999999996 899999999999999999 99999999999999
Q ss_pred ccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHH
Q psy4881 258 SSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQE 335 (423)
Q Consensus 258 ~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~ 335 (423)
+.+...+.+++.+ ++||+++++|||+|++++++|+++|++++|+++||+|||+.|||++||+++|+++ ||.++|++.
T Consensus 326 ~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~ 404 (868)
T 2yic_A 326 APTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDV 404 (868)
T ss_dssp CHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHH
T ss_pred CccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHH
Confidence 7654434444444 5789999999999999999999999999999999999999999999999999985 888888888
Q ss_pred HHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy4881 336 VRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARA 381 (423)
Q Consensus 336 ~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~ 381 (423)
|++.+||+.+|+++|+++|++|++++++++++++++|++++++|++
T Consensus 405 ~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~ 450 (868)
T 2yic_A 405 IDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE 450 (868)
T ss_dssp HTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877999999999999999999999999999999999999999987
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.8e-35 Score=333.49 Aligned_cols=191 Identities=21% Similarity=0.224 Sum_probs=172.0
Q ss_pred CCCCC-CcHHHHHHHHHHHhcC----------CCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCC---EEEEEecCCccc
Q psy4881 191 TNQLV-TVPLGVGIALAAKYSG----------TKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIP---CIFVCENNGYGM 255 (423)
Q Consensus 191 sg~~g-~l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi 255 (423)
++.+| ++|.|+|+|+|.|+.+ .+.+++|++|||++ ++|.+||+||+|+.|+|| +|+||+||+|||
T Consensus 489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gi 568 (1113)
T 2xt6_A 489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF 568 (1113)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBT
T ss_pred CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCccc
Confidence 34444 6999999999999876 57899999999995 999999999999999999 999999999999
Q ss_pred ccccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHH
Q psy4881 256 GTSSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEI 333 (423)
Q Consensus 256 ~~~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~ 333 (423)
+++.....+.+++.+ ++||+++++|||+|++++++|+++|++++|+++||+|||+.|||++||+++|+++ ||.++|+
T Consensus 569 st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~ 647 (1113)
T 2xt6_A 569 TTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMY 647 (1113)
T ss_dssp TBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHH
T ss_pred ccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHH
Confidence 997553333333433 5789999999999999999999999999999999999999999999999999985 7788888
Q ss_pred HHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy4881 334 QEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARAD 382 (423)
Q Consensus 334 ~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~~ 382 (423)
+.|++.+||+.+|+++|+++|++|++++++++++++++|++++++|++.
T Consensus 648 ~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~ 696 (1113)
T 2xt6_A 648 DVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVREL 696 (1113)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888779999999999999999999999999999999999999999883
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1e-34 Score=322.07 Aligned_cols=191 Identities=20% Similarity=0.199 Sum_probs=155.2
Q ss_pred cCCCCCCcHHHHHHHHHHHhcC-----CCCEEEEEeCCCcc-chhhHHHHHHHhHhcCCC---EEEEEecCCccccc-cc
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSG-----TKGVCFALYGDGAA-NQGQVFEVYNIAKLWNIP---CIFVCENNGYGMGT-SS 259 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vi~Vv~NN~~gi~~-~~ 259 (423)
+|+.++++|+|+|+|+|.++++ .+.++||++|||++ ++|.+||+||+|+.+++| +|+||+||+|||++ +.
T Consensus 320 ~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~ 399 (933)
T 2jgd_A 320 PSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNP 399 (933)
T ss_dssp CSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC--------
T ss_pred CcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCH
Confidence 3555567999999999999984 67899999999998 999999999999999999 99999999999999 77
Q ss_pred ccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHH
Q psy4881 260 ERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR 337 (423)
Q Consensus 260 ~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~ 337 (423)
+.....+++.+ +++|+++++|||+|++++++++++|++++|++++|+|||+.|||++||+.+|++. ||+++|++.|+
T Consensus 400 ~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~-yr~~~e~~~~~ 478 (933)
T 2jgd_A 400 LDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPS-ATQPLMYQKIK 478 (933)
T ss_dssp -------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHH
T ss_pred HhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchh-hCCHHHHHHHH
Confidence 76554455554 5789999999999999999999999999999999999999999999999999874 99999999998
Q ss_pred hcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy4881 338 QTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARA 381 (423)
Q Consensus 338 ~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~A~~ 381 (423)
+.+||+.+|+++|+++|++|++++++++++++++|++++++|++
T Consensus 479 ~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~ 522 (933)
T 2jgd_A 479 KHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAE 522 (933)
T ss_dssp TSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred ccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65799999999999999999999999999999999999999887
No 9
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.97 E-value=7.7e-32 Score=288.92 Aligned_cols=306 Identities=15% Similarity=0.137 Sum_probs=210.0
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
++|.+| |+++|+++..+....+....++|.++.++.+ |+. +.+ ...| +.+..+|+++
T Consensus 250 ~~~~~h--p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~---------~~~----------~~~-~~~~~~~~~~i~id~ 307 (603)
T 4feg_A 250 IVADRY--PAYLGSANRVAQKPANEALAQADVVLFVGNN---------YPF----------AEV-SKAFKNTRYFLQIDI 307 (603)
T ss_dssp SSCTTC--TTBCCCCSSSSCHHHHHHHHHCSEEEEESCC---------CTT----------TTT-TTTTTTCSEEEEEES
T ss_pred CCCCCC--hhhcccCcccCcHHHHHHHHhCCEEEEECCC---------CCc----------ccc-cccCCCCCeEEEEeC
Confidence 456666 6666666555544444444444544444433 431 011 1224 3467789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccCC--Ccccccc-------c--------cCCCCCCCHHHHHHHHHhhccC-
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPNRSI-------T--------YPTPSTMSDSQVDKAIDKYVKE- 158 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~~-------~--------~~~~~~~~p~~vi~~l~~~~~~- 158 (423)
++ +++++. .++++|++.+++.++..... ...|... | .....+++|+++++.|++.+++
T Consensus 308 d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~ 387 (603)
T 4feg_A 308 DPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPD 387 (603)
T ss_dssp CGGGTTSSSCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTT
T ss_pred CHHHhCCccCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCC
Confidence 99 577765 47888998888776554321 2234221 1 1234679999999999999965
Q ss_pred CeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHh
Q psy4881 159 NEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIA 237 (423)
Q Consensus 159 ~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A 237 (423)
+++++|.| +++|.... .... .++.++ ++++.|+||+++|+|+|++++.++++|||++|||+++++ +++|++|
T Consensus 388 ~ivv~d~G~~~~~~~~~---~~~~-~~~~~~-~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~--~~~l~~a 460 (603)
T 4feg_A 388 AIYSIDVGDINLNANRH---LKLT-PSNRHI-TSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMT--MQDLATQ 460 (603)
T ss_dssp CEEEECSSHHHHHHHHH---CCCC-TTCEEE-CCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHH--GGGHHHH
T ss_pred CEEEECCchHHHHHHHh---ceeC-CCCcee-cCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhh--HHHHHHH
Confidence 67888866 45552211 1111 223344 677788999999999999999999999999999999986 5669999
Q ss_pred HhcCCCEEEEEecCC-ccccccccc----------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCC
Q psy4881 238 KLWNIPCIFVCENNG-YGMGTSSER----------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKG 304 (423)
Q Consensus 238 ~~~~LPvi~Vv~NN~-~gi~~~~~~----------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~g 304 (423)
+++++|+++||.||+ |++.+..+. ....++|.+ ++||+++++|+ +++++.+++++|++ .+.+|
T Consensus 461 ~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~g 536 (603)
T 4feg_A 461 VQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHE 536 (603)
T ss_dssp HHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTS
T ss_pred HHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCC
Confidence 999999998888886 787543321 113467877 67899999998 67788887777762 15789
Q ss_pred cEEEEEEE---ecCCCCCCCCCCCCcCChh--HHHHHHhcCChHHHHHHHHHHcCCCCHHHH
Q psy4881 305 PILLETAT---YRYSGHSMSDPGTSYRTRD--EIQEVRQTRDPISSLKDKILNASLVTPEEL 361 (423)
Q Consensus 305 P~lIev~t---~R~~gH~~~D~~~~YR~~~--e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~ 361 (423)
|+||||.| +|..+|...|+++.||..+ ++.+|+ ++||+.+|+++|.+.|+|++++.
T Consensus 537 P~lIev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 537 PVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp CEEEEEECCCCCCCCTTSCCCCTTTSCHHHHHHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred cEEEEEEeCCCCCCCcccchhhhhhhhHHHHHHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 99999999 4556788888887888665 566666 58999999999999999998763
No 10
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.91 E-value=1e-24 Score=233.14 Aligned_cols=263 Identities=16% Similarity=0.113 Sum_probs=182.7
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCCcccCCcccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~ 101 (423)
++|.+| |+++|+++.++....+....++|.++.++.+ ++. .... .+ .||.+..+|++++
T Consensus 243 ~~~~~~--p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~---------~~~-----~~~~---~~--~~~~~~~i~id~d 301 (590)
T 1v5e_A 243 TFEWDF--EALTGSTYRVGWKPANETILEADTVLFAGSN---------FPF-----SEVE---GT--FRNVDNFIQIDID 301 (590)
T ss_dssp GSCTTC--TTEEEESSSSSCHHHHHHHHHCSEEEEESCC---------CTT-----TTTT---TT--TTTCSEEEEEESC
T ss_pred CCCCCC--hhhCccCcccCCHHHHHHHHhCCEEEEECCC---------Ccc-----hhcc---cc--CCCCCeEEEEeCC
Confidence 456666 6666666666555544444455555554443 431 0000 00 1344567899999
Q ss_pred c-cccCcc---cceeecCCCccchhhcccC--CCccccccc---------c------CCCCCCCHHHHHHHHHhhccC-C
Q psy4881 102 K-FHKDNV---GPLIIDGNTFPDYVLDKYT--LPTPNRSIT---------Y------PTPSTMSDSQVDKAIDKYVKE-N 159 (423)
Q Consensus 102 ~-~~g~nv---gpl~~d~~~vl~~~l~~~~--~~~~~r~~~---------~------~~~~~~~p~~vi~~l~~~~~~-~ 159 (423)
+ +++++. .++++|.+.+++.++.... ....|...+ . ....+++|+++++.|++.+++ +
T Consensus 302 ~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 381 (590)
T 1v5e_A 302 PAMLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADEDA 381 (590)
T ss_dssp GGGTTSSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTTC
T ss_pred HHHHCCCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCCC
Confidence 8 588876 5888999888877654332 123453211 0 123458999999999999975 5
Q ss_pred eEEeCCC-Ccccc-ccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHh
Q psy4881 160 EYSQDSD-ENMTN-QLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIA 237 (423)
Q Consensus 160 ~~~~d~g-~~~~~-~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A 237 (423)
++++|.| +++|. .+. ... .++.++ ++++.|+|+.++++|+|++++.++++|||++|||+++++ +++|++|
T Consensus 382 ivv~d~G~~~~~~~~~~----~~~-~~~~~~-~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~--~~~L~ta 453 (590)
T 1v5e_A 382 IYSIDVGNSTQTSIRHL----HMT-PKNMWR-TSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMT--YPDVVTN 453 (590)
T ss_dssp EEEECSSHHHHGGGGTC----CCC-TTSEEE-CCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHH--GGGHHHH
T ss_pred EEEECCchHHHHHHHhc----ccC-CCCeEE-cCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhch--HHHHHHH
Confidence 7888855 45562 222 211 233344 667778888888888888888899999999999999986 4789999
Q ss_pred HhcCCCEEEEEecC-Ccccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCc
Q psy4881 238 KLWNIPCIFVCENN-GYGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGP 305 (423)
Q Consensus 238 ~~~~LPvi~Vv~NN-~~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP 305 (423)
+++++|+++||.|| +|+|.+..+.. ...++|.+ ++||+++++|+ +.+++.+++++|++.+|. +||
T Consensus 454 ~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp 530 (590)
T 1v5e_A 454 VRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHT 530 (590)
T ss_dssp HHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCC
Confidence 99999988888777 57988765432 12467877 67899999998 789999999999876654 799
Q ss_pred EEEEEEEecCC
Q psy4881 306 ILLETATYRYS 316 (423)
Q Consensus 306 ~lIev~t~R~~ 316 (423)
+||||.|+|..
T Consensus 531 ~liev~~~~~~ 541 (590)
T 1v5e_A 531 VVIDCKITQDR 541 (590)
T ss_dssp EEEEEECCSCC
T ss_pred EEEEEEecccc
Confidence 99999999854
No 11
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.91 E-value=3.8e-24 Score=232.13 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=130.9
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ +|.|+|+|+|.++.+ .+++|+|++|||++++|++||+|++|+.++|| +|+||+||+|+
T Consensus 111 ~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~ 190 (680)
T 1gpu_A 111 VEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKIT 190 (680)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred eeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCce
Confidence 4446777775 999999999998764 48899999999999999999999999999999 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeE-EeeCC-CHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCC---CCc
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGI-WVDGM-DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPG---TSY 327 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~-d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~---~~Y 327 (423)
|+++..... .+++.+ ++||++++ +|||| |++++.+++++|++ ..++|+||+++|+|++||+.+|+. ..|
T Consensus 191 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~ 266 (680)
T 1gpu_A 191 IDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAP 266 (680)
T ss_dssp TTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSC
T ss_pred Eeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCC
Confidence 998776443 467776 57899999 99999 99999999999875 368999999999999999987753 469
Q ss_pred CChhHHHHHHhcCChH
Q psy4881 328 RTRDEIQEVRQTRDPI 343 (423)
Q Consensus 328 R~~~e~~~~~~~~DPi 343 (423)
|+++|+++|++ ++++
T Consensus 267 ~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 267 LKADDVKQLKS-KFGF 281 (680)
T ss_dssp CCHHHHHHHHH-HTTC
T ss_pred CCHHHHHHHHH-HcCC
Confidence 99999999984 4544
No 12
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.90 E-value=7.2e-25 Score=236.76 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=130.0
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ +|.|+|+|+|.++.+ ++++|+|++|||++++|+++|+|++|++++|| +|+||+||+|+
T Consensus 113 ~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~ 192 (651)
T 2e6k_A 113 VEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRIS 192 (651)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEE
T ss_pred eeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcc
Confidence 4446777775 999999999998765 68999999999999999999999999999999 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCc----
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSY---- 327 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~Y---- 327 (423)
|+++.+... ..++.+ ++||++++ +|||||++++++++++|++ .++|+||++.|+|++||+..|+ ..|
T Consensus 193 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~-~~~H~~~ 266 (651)
T 2e6k_A 193 IDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDS-AKAHGEP 266 (651)
T ss_dssp TTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTS-GGGTSSC
T ss_pred ccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccccccc-ccccccC
Confidence 998877654 567776 57899999 9999999999999998874 6899999999999999995554 356
Q ss_pred CChhHHHHHHhcCChHH
Q psy4881 328 RTRDEIQEVRQTRDPIS 344 (423)
Q Consensus 328 R~~~e~~~~~~~~DPi~ 344 (423)
++++|+++|+ +++|+.
T Consensus 267 ~~~~e~~~~~-~~~~~~ 282 (651)
T 2e6k_A 267 LGPEAVEATR-RNLGWP 282 (651)
T ss_dssp CHHHHHHHHH-HHHTCC
T ss_pred CCHHHHHHHH-HHcCCC
Confidence 5788999987 467663
No 13
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.90 E-value=9e-25 Score=237.08 Aligned_cols=263 Identities=17% Similarity=0.123 Sum_probs=177.4
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccC------
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCD------ 94 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cd------ 94 (423)
+||.+| |+++|++++++...++....++|.++.++.+ |+.- . ......| +.+.
T Consensus 330 ~~~~~h--pl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r---------~~~~-------~--t~~~~~~~~~~~~~~~~~ 389 (677)
T 1t9b_A 330 SFDQED--PKSLDMLGMHGCATANLAVQNADLIIAVGAR---------FDDR-------V--TGNISKFAPEARRAAAEG 389 (677)
T ss_dssp SSCTTS--TTEEEECSTTSCHHHHHHHHHCSEEEEESCC---------CCTT-------T--SCSGGGSSHHHHHHHHTT
T ss_pred cCCCCC--ccccCcCCccCcHHHHHHHhcCCEEEEECCc---------cCcc-------c--ccCccccCcccccccccC
Confidence 466667 7777766666555544444455555555544 5410 0 1111123 2233
Q ss_pred ---Cccccccc-cccCcc---cceeecCCCccchhhcccCC---Ccccccc-------c---cC---CCCCCCHHHHHHH
Q psy4881 95 ---NSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRSI-------T---YP---TPSTMSDSQVDKA 151 (423)
Q Consensus 95 ---g~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~~-------~---~~---~~~~~~p~~vi~~ 151 (423)
.+|+++++ +++++. .+|++|++.+++.++..... ...|... + +. ....++|+.+++.
T Consensus 390 ~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 469 (677)
T 1t9b_A 390 RGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKK 469 (677)
T ss_dssp SCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHSCCCCCCCCTTCCBCHHHHHHH
T ss_pred CceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhcccccccccCCCCcCHHHHHHH
Confidence 67999999 577765 47889988887776554321 2234221 1 11 1245889999999
Q ss_pred HHhhc---cCC-eEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccc
Q psy4881 152 IDKYV---KEN-EYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAAN 226 (423)
Q Consensus 152 l~~~~---~~~-~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~ 226 (423)
|++.+ +++ ++++|.+ .++|.... .... .++.++ ++|+.|+||+++++|+|++++.++++|||++|||+++
T Consensus 470 L~~~l~~~~~~~iv~~~vg~~~~~~~~~---~~~~-~p~~~~-~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~ 544 (677)
T 1t9b_A 470 LSKVANDTGRHVIVTTGVGQHQMWAAQH---WTWR-NPHTFI-TSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFN 544 (677)
T ss_dssp HHHHHHTTCSCEEEEECSSHHHHHHHHH---SCCC-STTCEE-CCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHH
T ss_pred HHHHhhcCCCCEEEEeCCchHHHHHHHh---cccC-CCCeEE-eCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHh
Confidence 99988 455 4556643 44562211 1111 233344 6777888999999999999989999999999999999
Q ss_pred hhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc------c----cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHH
Q psy4881 227 QGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER------A----SASVDYYT--RGDYIPGIWVDGMDILAVREAAR 293 (423)
Q Consensus 227 ~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~ 293 (423)
++ +++|++|+++++|+++||.||+ |+|.+.++. . ...++|.+ ++||+++++|+ +.+++.++++
T Consensus 545 ~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~ 620 (677)
T 1t9b_A 545 MT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLK 620 (677)
T ss_dssp HH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHH
T ss_pred cc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHH
Confidence 85 4559999999999877777665 788765431 1 12467877 67899999998 7899999998
Q ss_pred HHHHHhhCCCCcEEEEEEEecCCC
Q psy4881 294 FAVNHCRSDKGPILLETATYRYSG 317 (423)
Q Consensus 294 ~A~~~ar~~~gP~lIev~t~R~~g 317 (423)
+|++ .+||+||||.|+|...
T Consensus 621 ~a~~----~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 621 EFVS----TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp HHHH----CSSCEEEEEEBCSSCC
T ss_pred HHHH----CCCcEEEEEEecCCcc
Confidence 8874 5899999999998653
No 14
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.90 E-value=4.1e-23 Score=223.71 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=128.2
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ +|.|+|+|+|.++.+ .+++|+|++|||++++|++||+|++|+.++|| +|+||+||+|+
T Consensus 111 v~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~ 190 (673)
T 1r9j_A 111 VEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYIS 190 (673)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBC
T ss_pred eeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCc
Confidence 4556788885 999999999999765 68899999999999999999999999999998 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeE-EeeC-CCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCC---CCc
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGI-WVDG-MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPG---TSY 327 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~-~VdG-~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~---~~Y 327 (423)
|+.+.+... ..++.+ ++||++++ +||| ||++++++|+++|.+ ..++|+||+++|+|++||+..|.. ..+
T Consensus 191 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~ 266 (673)
T 1r9j_A 191 IDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGAP 266 (673)
T ss_dssp SSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred cccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccCC
Confidence 998887655 567776 67899999 9999 999999999998874 368999999999999999965542 246
Q ss_pred CChhHHHHHHh
Q psy4881 328 RTRDEIQEVRQ 338 (423)
Q Consensus 328 R~~~e~~~~~~ 338 (423)
++++|++.|++
T Consensus 267 ~~~ee~~~~~~ 277 (673)
T 1r9j_A 267 LGEEDIANIKA 277 (673)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88899888774
No 15
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.89 E-value=3.1e-24 Score=229.27 Aligned_cols=263 Identities=16% Similarity=0.104 Sum_probs=179.7
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
+||.+| |+++|++++++....+....++|.++.++.+ ++. .. ......| +.+..+|+++
T Consensus 252 ~~~~~h--p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~---------~~~-------~~--~~~~~~~~~~~~~i~id~ 311 (590)
T 1ybh_A 252 SYPADD--ELSLHMLGMHGTVYANYAVEHSDLLLAFGVR---------FDD-------RV--TGKLEAFASRAKIVHIDI 311 (590)
T ss_dssp SSCTTS--TTEEEECSTTSCHHHHHHHHHCSEEEEESCC---------CCH-------HH--HSSGGGTTTTSEEEEEES
T ss_pred cCCCCC--chhcCCcccccCHHHHHHHHhCCEEEEEcCC---------CCc-------cc--cCcccccCCCCeEEEEEC
Confidence 467777 7777777776665555555555555555543 441 11 2222233 4466789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccC--------CCcccccc-------c---c-CCCCCCCHHHHHHHHHhhcc
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYT--------LPTPNRSI-------T---Y-PTPSTMSDSQVDKAIDKYVK 157 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~--------~~~~~r~~-------~---~-~~~~~~~p~~vi~~l~~~~~ 157 (423)
++ +++++. .+|++|++.+++.++.... ....|... + . .....++|..+++.|++.++
T Consensus 312 d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~lp 391 (590)
T 1ybh_A 312 DSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTD 391 (590)
T ss_dssp CTTTTTSSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCCCCCTTBCCHHHHHHHHHHHTT
T ss_pred CHHHhCCCcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhhcccccCCcCHHHHHHHHHHhCC
Confidence 99 677765 4788898888776643221 11234221 1 1 11245899999999999997
Q ss_pred C-CeEEeCCCCc-cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHH
Q psy4881 158 E-NEYSQDSDEN-MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235 (423)
Q Consensus 158 ~-~~~~~d~g~~-~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn 235 (423)
+ +++++|.|.. +|... +.... .++.++ .+++.|+||+++++|+|++++.++++|||++|||+++++ +++|+
T Consensus 392 ~~~ivv~d~G~~~~~~~~---~~~~~-~~~~~~-~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~--~~~L~ 464 (590)
T 1ybh_A 392 GKAIISTGVGQHQMWAAQ---FYNYK-KPRQWL-SSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMN--VQELA 464 (590)
T ss_dssp TCCEEEECSSHHHHHHHH---SCCCS-STTSEE-CCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHT--TTHHH
T ss_pred CCCEEEEcCcHHHHHHHH---hcccC-CCCeEE-eCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhcc--HHHHH
Confidence 5 5788886543 45221 11211 233344 667778888888888888888899999999999999986 46799
Q ss_pred HhHhcCCCEEEEEecCC-ccccccccc------c----c--------CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHH
Q psy4881 236 IAKLWNIPCIFVCENNG-YGMGTSSER------A----S--------ASVDYYT--RGDYIPGIWVDGMDILAVREAARF 294 (423)
Q Consensus 236 ~A~~~~LPvi~Vv~NN~-~gi~~~~~~------~----~--------~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~ 294 (423)
+|+++++|+++||.||+ |+|.+.++. . . ..++|.+ ++||+++++|+ +.+++.+++++
T Consensus 465 ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~ 542 (590)
T 1ybh_A 465 TIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQT 542 (590)
T ss_dssp HHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHH
Confidence 99999999877777665 788764321 0 0 1357776 67899999998 78999999988
Q ss_pred HHHHhhCCCCcEEEEEEEecCCC
Q psy4881 295 AVNHCRSDKGPILLETATYRYSG 317 (423)
Q Consensus 295 A~~~ar~~~gP~lIev~t~R~~g 317 (423)
|++ .+||+||||.|+|...
T Consensus 543 a~~----~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 543 MLD----TPGPYLLDVICPHQEH 561 (590)
T ss_dssp HHH----SSSCEEEEEECCTTCC
T ss_pred HHh----CCCCEEEEEEecCCcc
Confidence 874 5899999999998654
No 16
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.89 E-value=2.9e-24 Score=230.64 Aligned_cols=266 Identities=15% Similarity=0.071 Sum_probs=180.0
Q ss_pred cccCCCCCccccccCCCCCCC-CcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCcccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIP-SEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKY 99 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~ 99 (423)
++|.+| |+++|+++..+.. ..+....++|.++.++.+ ++. .. ......| +.+..+|++
T Consensus 266 ~~~~~h--p~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~---------~~~-------~~--~~~~~~~~~~~~~i~id 325 (616)
T 2pan_A 266 CIPDDH--ELMAGMVGLQTAHRYGNATLLASDMVFGIGNR---------FAN-------RH--TGSVEKYTEGRKIVHID 325 (616)
T ss_dssp SSCTTS--TTBCCCCSSSSCCHHHHHHHHHCSEEEEESCC---------CCH-------HH--HSSHHHHHTTCEEEEEE
T ss_pred cCCCCC--ccccCCccccCCHHHHHHHHHhCCEEEEECCC---------Ccc-------cc--cCcccccCCCCeEEEEe
Confidence 367777 7777777766554 444444555555555543 431 01 1111112 335567999
Q ss_pred ccc-cccCcc---cceeecCCCccchhhccc--------CCCccccc-------cc---cC--CCCCCCHHHHHHHHHhh
Q psy4881 100 HNK-FHKDNV---GPLIIDGNTFPDYVLDKY--------TLPTPNRS-------IT---YP--TPSTMSDSQVDKAIDKY 155 (423)
Q Consensus 100 ~~~-~~g~nv---gpl~~d~~~vl~~~l~~~--------~~~~~~r~-------~~---~~--~~~~~~p~~vi~~l~~~ 155 (423)
+++ +++++. .++++|++.+++.++... ....+|.. .+ .. ....++|+.++..|++.
T Consensus 326 ~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 405 (616)
T 2pan_A 326 IEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKA 405 (616)
T ss_dssp SCGGGTTSSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHH
T ss_pred CCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHh
Confidence 988 578876 478899888877664321 11122321 11 11 22458999999999999
Q ss_pred ccC-CeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH
Q psy4881 156 VKE-NEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV 233 (423)
Q Consensus 156 ~~~-~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea 233 (423)
+++ .++++|.| ..+|... +.+.. .++.+. .+|+.|+||+++++|+|++++.++++|||++|||+++++ +++
T Consensus 406 l~~~~ivv~d~G~~~~~~~~---~~~~~-~~~~~~-~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~--~~~ 478 (616)
T 2pan_A 406 FGRDVCYVTTIGLSQIAAAQ---MLHVF-KDRHWI-NCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFL--IEE 478 (616)
T ss_dssp SCTTEEEEECSSHHHHHHHH---HCCCC-STTSEE-ECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHT--GGG
T ss_pred CCCCcEEEEcCcHHHHHHHH---hcccC-CCCeEE-cCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCC--HHH
Confidence 975 57778855 3455221 11111 223344 667778888888888888888899999999999999986 467
Q ss_pred HHHhHhcCCCEEEEEecCC-ccccccccc-----------c-----cC----Cchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 234 YNIAKLWNIPCIFVCENNG-YGMGTSSER-----------A-----SA----SVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 234 Ln~A~~~~LPvi~Vv~NN~-~gi~~~~~~-----------~-----~~----~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
|++|+++++|+++||.||+ |+|.+..+. . .. .++|.+ ++||+++++|+ +++++.+
T Consensus 479 L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~ 556 (616)
T 2pan_A 479 LAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAP 556 (616)
T ss_dssp HHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHH
T ss_pred HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHH
Confidence 9999999999888777776 788755331 1 01 257776 67899999998 6889999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEecCC
Q psy4881 291 AARFAVNHCRSDKGPILLETATYRYS 316 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R~~ 316 (423)
++++|++++|+.+||+||||.|+|..
T Consensus 557 al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 557 AFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred HHHHHHhhcccCCCcEEEEEEecccc
Confidence 99999987766789999999999865
No 17
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.89 E-value=2.3e-24 Score=230.32 Aligned_cols=263 Identities=15% Similarity=0.095 Sum_probs=178.8
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
++|.+| |+++|++++.+....+....++|.++.++.+ +.. +. . . + ..| +.+..+|+++
T Consensus 245 ~~~~~~--p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~---------~~~-----~~-~-~-~--~~~~~~~~~i~id~ 303 (589)
T 2pgn_A 245 VFPETH--ALAMGSAGFCGWKSANDMMAAADFVLVLGSR---------LSD-----WG-I-A-Q--GYITKMPKFVHVDT 303 (589)
T ss_dssp SSCTTS--TTEEEECSTTSCHHHHHHHHHCSEEEEESCC---------CCT-----TT-T-T-T--TTTCCCCSEEEEES
T ss_pred cCCCCC--hhhcCCccccCCHHHHHHHhhCCEEEEECCC---------ccc-----cc-c-c-c--cccCCCCeEEEEeC
Confidence 456666 6666666665554444444445555555433 431 00 1 1 2 234 4567789999
Q ss_pred cc-cccCcc---cceeecCCCccchhhcccC-----------CCcccc--ccc----------cC--CCCCCCHHHHHHH
Q psy4881 101 NK-FHKDNV---GPLIIDGNTFPDYVLDKYT-----------LPTPNR--SIT----------YP--TPSTMSDSQVDKA 151 (423)
Q Consensus 101 ~~-~~g~nv---gpl~~d~~~vl~~~l~~~~-----------~~~~~r--~~~----------~~--~~~~~~p~~vi~~ 151 (423)
++ +++++. .+|++|++.++..++.... ....|. ..+ .. ....++|..+++.
T Consensus 304 d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (589)
T 2pgn_A 304 DPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVREQESGDGMPASMFRAMAE 383 (589)
T ss_dssp CGGGTTSSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHH
T ss_pred CHHHHCCCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHHHHhhhccCCCCCcCHHHHHHH
Confidence 98 677765 4788898888776543221 123454 211 11 2346899999999
Q ss_pred HHhhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhh
Q psy4881 152 IDKYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQ 229 (423)
Q Consensus 152 l~~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~ 229 (423)
|++.+++ +++++|.|. .+|.... .... .+++++ ++++.|+||.++++|+|++++.++++|||++|||+++++
T Consensus 384 l~~~l~~~~iv~~d~g~~~~~~~~~---~~~~-~~~~~~-~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~- 457 (589)
T 2pgn_A 384 VRKVQRPEDIIVTDIGNHTLPMFGG---AILQ-RPRRLV-TSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYH- 457 (589)
T ss_dssp HHHTCCTTCEEEECSSTTHHHHHHH---CCCS-STTCEE-SCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHH-
T ss_pred HHHhCCCCCEEEEcCchHHHHHHHh---cccC-CCCcEE-CCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhh-
Confidence 9999975 578888554 4552211 1111 233344 555667888888888888888889999999999999986
Q ss_pred HHHHHHHhHhcCCCEEEEEecCC-ccccccccc---------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHH
Q psy4881 230 VFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER---------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVN 297 (423)
Q Consensus 230 ~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~---------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~ 297 (423)
+++|++|+++++|+++||.||+ |+|.+..+. ....++|.+ ++||+++++|+ +.+++.+++++|++
T Consensus 458 -~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~ 534 (589)
T 2pgn_A 458 -FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID 534 (589)
T ss_dssp -GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh
Confidence 4889999999999888887776 788775532 122467877 67899999998 56789999988874
Q ss_pred HhhCCCCcEEEEEEEecCCCC
Q psy4881 298 HCRSDKGPILLETATYRYSGH 318 (423)
Q Consensus 298 ~ar~~~gP~lIev~t~R~~gH 318 (423)
.+||+||||.|+|..+.
T Consensus 535 ----~~gp~liev~~~~~~~~ 551 (589)
T 2pgn_A 535 ----SGKPALIEIPVSKTQGL 551 (589)
T ss_dssp ----HCSCEEEEEECCSSSST
T ss_pred ----CCCCEEEEEEecCCCCc
Confidence 47999999999986543
No 18
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.89 E-value=8.3e-24 Score=224.13 Aligned_cols=256 Identities=14% Similarity=0.100 Sum_probs=173.5
Q ss_pred ccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCCc-ccCCcccccc
Q psy4881 23 YPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFP-FCDNSHKYHN 101 (423)
Q Consensus 23 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p-~cdg~H~~~~ 101 (423)
+|.+| |+++|+++..+....+....++|.++.++.+ |.. +. .++ .+..+|++++
T Consensus 240 ~~~~h--p~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~---------~~~-------------~~-~~~~~~~~i~id~d 294 (549)
T 3eya_A 240 VEYDN--PYDVGMTGLIGFSSGFHTMMNADTLVLLGTQ---------FPY-------------RA-FYPTDAKIIQIDIN 294 (549)
T ss_dssp HSSSC--TTBCCCCSTTSCHHHHHHHHHCSEEEEESCC---------CCC-------------GG-GSCSSSEEEEEESC
T ss_pred CCCCC--cccccCCCCCCCHHHHHHHHhCCEEEEECCC---------CCc-------------cc-cCCCCCeEEEEeCC
Confidence 67777 7777776665555444444455555544433 331 11 122 3566799988
Q ss_pred c-cccCcc---cceeecCCCccchhhcccCC--Cccccccc--------------c-CCCCCCCHHHHHHHHHhhccC-C
Q psy4881 102 K-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPNRSIT--------------Y-PTPSTMSDSQVDKAIDKYVKE-N 159 (423)
Q Consensus 102 ~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~r~~~--------------~-~~~~~~~p~~vi~~l~~~~~~-~ 159 (423)
+ +++++. .++++|++.+++.++..... ...|...| . .....++|+.+++.+++++++ +
T Consensus 295 ~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 374 (549)
T 3eya_A 295 PASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDA 374 (549)
T ss_dssp GGGTTSSSCCSEEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTC
T ss_pred HHHhCCCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCC
Confidence 8 577765 47888998887776554322 22343211 1 123568999999999999965 6
Q ss_pred eEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhH
Q psy4881 160 EYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAK 238 (423)
Q Consensus 160 ~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~ 238 (423)
++++|.| ..+|... +.... .+++++ .+++.|+||.++|+|+|++++.++++|||++|||+++++ +++|++|+
T Consensus 375 ivv~d~G~~~~~~~~---~~~~~-~~~~~~-~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~--~~~L~ta~ 447 (549)
T 3eya_A 375 IFTCDVGTPTVWAAR---YLKMN-GKRRLL-GSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSML--MGDFLSVV 447 (549)
T ss_dssp EEEECTTHHHHHHHH---HCCCC-SSCEEE-CCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHT--GGGHHHHH
T ss_pred EEEEcCcHHHHHHHH---hCccC-CCCcEE-eCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhcc--HHHHHHHH
Confidence 7888855 4445211 11111 233344 566778899999999999999999999999999999886 46799999
Q ss_pred hcCCCEEEEEecCC-cccccccccc---------cCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 239 LWNIPCIFVCENNG-YGMGTSSERA---------SASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 239 ~~~LPvi~Vv~NN~-~gi~~~~~~~---------~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
++++|+++||.||+ ||+.+..+.. ...++|.+ ++||+++++|+ +.+++.+++++|++ .+||+
T Consensus 448 ~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~ 521 (549)
T 3eya_A 448 QMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPV 521 (549)
T ss_dssp HTTCCCEEEEEECSBCCCC------------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCE
T ss_pred HhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCE
Confidence 99999877777765 7876544321 12467777 67899999997 78899888888874 68999
Q ss_pred EEEEEEecCC
Q psy4881 307 LLETATYRYS 316 (423)
Q Consensus 307 lIev~t~R~~ 316 (423)
||||.|.+..
T Consensus 522 liev~~~~~~ 531 (549)
T 3eya_A 522 LVDVVVAKEE 531 (549)
T ss_dssp EEEEEBCCCC
T ss_pred EEEEEecccc
Confidence 9999998743
No 19
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.89 E-value=9.6e-23 Score=220.73 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=116.1
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhc-------------CCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecC
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYS-------------GTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENN 251 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~-------------~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN 251 (423)
+..++|.+|+ ++.|+|+|+|.|+. +.+++|+|++|||++++|.+||+|++|+.|+|| +|+||+||
T Consensus 128 v~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N 207 (700)
T 3rim_A 128 VEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRN 207 (700)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred ccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECC
Confidence 4556788885 99999999999984 568899999999999999999999999999998 99999999
Q ss_pred CcccccccccccCCchhhh--hcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCC
Q psy4881 252 GYGMGTSSERASASVDYYT--RGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 322 (423)
Q Consensus 252 ~~gi~~~~~~~~~~~~~~~--~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D 322 (423)
+|+|+.+..... ..++.+ ++||+++++| ||||+++|++|+++|.+ ..++|+||+++|+|++||+...
T Consensus 208 ~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e 277 (700)
T 3rim_A 208 QISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLM 277 (700)
T ss_dssp SEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTT
T ss_pred Ccccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccC
Confidence 999998877543 456666 5789999999 99999999999998874 3689999999999999998543
No 20
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.89 E-value=8.4e-24 Score=222.94 Aligned_cols=259 Identities=15% Similarity=0.142 Sum_probs=172.7
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-cccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~ 100 (423)
++|.+| |+++|+++ .+....+....++|.++.++.+ +... . . ......+ +.+..+|+++
T Consensus 241 ~~~~~~--p~~~G~~g-~~~~~~~~~l~~aDlvl~iG~~---------~~~~-~-----~--~~~~~~~~~~~~~i~id~ 300 (528)
T 1q6z_A 241 PFPTRH--PCFRGLMP-AGIAAISQLLEGHDVVLVIGAP---------VFRY-H-----Q--YDPGQYLKPGTRLISVTC 300 (528)
T ss_dssp CSCTTS--TTEEEECC-SCHHHHHHHHTTCSEEEEESSC---------TTCC-C-----S--CCCSCSSCTTCEEEEEES
T ss_pred cCCCCC--ccccCcCC-CCcHHHHHHHhcCCEEEEECCC---------Cccc-c-----c--cCcCCcCCCCCeEEEEeC
Confidence 467788 88888887 5544445555566666666544 3210 0 0 0011123 2456778888
Q ss_pred cc-cccCc--ccceeecCCCccchhhcccCCC----cccccccc---CCCCCCCHHHHHHHHHhhccC-CeEEeCCC-Cc
Q psy4881 101 NK-FHKDN--VGPLIIDGNTFPDYVLDKYTLP----TPNRSITY---PTPSTMSDSQVDKAIDKYVKE-NEYSQDSD-EN 168 (423)
Q Consensus 101 ~~-~~g~n--vgpl~~d~~~vl~~~l~~~~~~----~~~r~~~~---~~~~~~~p~~vi~~l~~~~~~-~~~~~d~g-~~ 168 (423)
++ +++++ -.++++|.+.+++.++...... .+|+.... .....++|+++++.|++.+++ +++++|.| ..
T Consensus 301 d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~ 380 (528)
T 1q6z_A 301 DPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTT 380 (528)
T ss_dssp CHHHHHHCSSSEEEESCHHHHHHHHHHHSCCCCSCCCCCCCCCCCCCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTSH
T ss_pred CHHHhCCCCCCeeEeCCHHHHHHHHHHHhhccccchHHHHhhhhcccccCCCcCHHHHHHHHHhhCCCCeEEEECCcccH
Confidence 88 46655 1367888887777665432211 12332211 123458999999999999975 57778854 44
Q ss_pred cccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEE
Q psy4881 169 MTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVC 248 (423)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv 248 (423)
+|.... .+.. .++.++ ++++ |+|+.++++|+|++++.++++|||++|||+++++ +|+|++|+++++|+++||
T Consensus 381 ~~~~~~---~~~~-~~~~~~-~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv 452 (528)
T 1q6z_A 381 AQMWQR---LNMR-NPGSYY-FCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVI 452 (528)
T ss_dssp HHHHHH---CCCC-SSSCEE-ECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEE
T ss_pred HHHHHh---cccc-CCCcEE-CCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEE
Confidence 452111 1111 233344 4444 7788888888888888889999999999999997 588999999999998888
Q ss_pred ecCC-ccccccccccc----------CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 249 ENNG-YGMGTSSERAS----------ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 249 ~NN~-~gi~~~~~~~~----------~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
.||+ |++.+..+... ..++|.+ ++||+++++|+ +.+++.+++++|+ +.+||+|||+.|.|
T Consensus 453 ~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 525 (528)
T 1q6z_A 453 MNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL----SAKGPVLIEVSTVS 525 (528)
T ss_dssp EECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH----TCSSCEEEEEEBCC
T ss_pred EeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCcEEEEEEecC
Confidence 8776 78876543211 2457776 67899999998 5778888777776 57899999999976
No 21
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.89 E-value=7e-23 Score=221.90 Aligned_cols=148 Identities=24% Similarity=0.215 Sum_probs=126.9
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ +|.|+|+|+|.++.+ .+++|+|++|||++++|+++|+|++|+.++|| +|+|++||+|+
T Consensus 109 ~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~ 188 (669)
T 2r8o_A 109 VETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS 188 (669)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred cccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcE
Confidence 4445677775 999999999998754 47899999999999999999999999999999 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC-CCCC---CCc
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM-SDPG---TSY 327 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~-~D~~---~~Y 327 (423)
|+.+..... .+++.+ ++||++++ +|||||++++.+++++|++ ..++|+||++.|+|++||+. .|+. ..|
T Consensus 189 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 264 (669)
T 2r8o_A 189 IDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAP 264 (669)
T ss_dssp TTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSC
T ss_pred ecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCC
Confidence 988776443 457776 57899999 9999999999999999875 36799999999999999984 4433 469
Q ss_pred CChhHHHHHHh
Q psy4881 328 RTRDEIQEVRQ 338 (423)
Q Consensus 328 R~~~e~~~~~~ 338 (423)
|+++|++.|++
T Consensus 265 ~~~ee~~~~~~ 275 (669)
T 2r8o_A 265 LGDAEIALTRE 275 (669)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998874
No 22
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.88 E-value=1.5e-23 Score=225.72 Aligned_cols=211 Identities=15% Similarity=0.108 Sum_probs=143.2
Q ss_pred hhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHhhc
Q psy4881 80 AICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDKYV 156 (423)
Q Consensus 80 ~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~~~ 156 (423)
.+|+..|...+ ....++|. +.+++.+.+ ..+|+..++.++++..| .+|+.|. +..++
T Consensus 32 ~l~~~iR~~~~~~~~~~~Gh~------~~~lg~v~l------~~aL~~~~~~~~D~~v~~~GH~~y~--------~~~l~ 91 (629)
T 2o1x_A 32 ALTEELRGEIVRVCSRGGLHL------ASSLGAVDI------ITALHYVLDSPRDRILFDVGHQAYA--------HKILT 91 (629)
T ss_dssp HHHHHHHHHHHHHHTTSSSCH------HHHHHTHHH------HHHHHHHSCTTTSEEEESSSTTCHH--------HHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcC------CCchhHHHH------HHHHHhhcCCCCCeEEecCchHHHH--------HHHHh
Confidence 56666665433 23467787 666665432 55566666645555444 3566532 22232
Q ss_pred cC-CeEEeCCCCccccccccccccccccCCeeeecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHH
Q psy4881 157 KE-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVY 234 (423)
Q Consensus 157 ~~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaL 234 (423)
.. +.+.+-.+-...+++..+.++.+ ....+|.+| ++|+|+|+|+|.|+++++++|||++|||++++|+++|+|
T Consensus 92 G~~~~~~~~r~~~g~~G~p~~~~s~~-----~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 92 GRRDQMADIKKEGGISGFTKVSESEH-----DAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp TTGGGGGGTTSTTSCCSSCCGGGCTT-----CCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred CcHhHHhCcccCCCCCCCCCCCCCCC-----CCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 11 11111111000112333322222 222455566 599999999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEEecCCcccccccccccC--------------------------C---------chhh---------h
Q psy4881 235 NIAKLWNIPCIFVCENNGYGMGTSSERASA--------------------------S---------VDYY---------T 270 (423)
Q Consensus 235 n~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~--------------------------~---------~~~~---------~ 270 (423)
|+|+++++|+|+||+||+|+|+++++.+.. . +++. +
T Consensus 167 ~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~ 246 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVN 246 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC---------------------------------------------CCC
T ss_pred HHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccch
Confidence 999999999999999999999887652110 0 1322 3
Q ss_pred --hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 271 --RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 271 --~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
+++|++++ +|||||++++.+++++|+ +.++|+|||+.|+|++||+
T Consensus 247 ~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 247 PFAAMGVRYVGPVDGHNVQELVWLLERLV----DLDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp TTGGGTCEEEEEEESSCHHHHHHHHHHHT----TSSSEEEEEEECCTTTTCH
T ss_pred HHHhcCCeEEeeECCcCHHHHHHHHHHHH----hcCCCEEEEEEEecCCCCC
Confidence 57899999 999999999999888876 5689999999999999997
No 23
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.88 E-value=3.2e-23 Score=222.90 Aligned_cols=211 Identities=17% Similarity=0.152 Sum_probs=137.5
Q ss_pred hhhhhcccCCC--cccCCccccccccccCcccceeecCCCccchhhcccCCCccccccc-cCCCCCCCHHHHHHHHHhhc
Q psy4881 80 AICRCWKSKKF--PFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSIT-YPTPSTMSDSQVDKAIDKYV 156 (423)
Q Consensus 80 ~~c~~~rs~~~--p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~~-~~~~~~~~p~~vi~~l~~~~ 156 (423)
.+|+..|...+ ....++|. +.+++-..+ ...++..++.+.++..| .+|+.|. +..++
T Consensus 30 ~l~~~iR~~~~~~~~~~~Gh~------~~~lg~~~~------~~~l~~~~~~~~D~~v~~~gH~~y~--------~~~l~ 89 (621)
T 2o1s_A 30 KLCDELRRYLLDSVSRSSGHF------ASGLGTVEL------TVALHYVYNTPFDQLIWDVGHQAYP--------HKILT 89 (621)
T ss_dssp HHHHHHHHHHHHHSCGGGCTH------HHHHTTHHH------HHHHHHHSCTTTSEEEESSSTTCHH--------HHHTT
T ss_pred HHHHHHHHHHHHHHhhcCCCc------CCChhHHHH------HHHHHhccCCCCCEEEEeCchHHHH--------HHHHh
Confidence 45666654433 23457776 556654332 55566666645555454 3666532 32232
Q ss_pred c-CCeEEeCC--CCccccccccccccccccCCeeeecCCCCC-CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH
Q psy4881 157 K-ENEYSQDS--DENMTNQLVTVTNQLVTVTNQLVTVTNQLV-TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE 232 (423)
Q Consensus 157 ~-~~~~~~d~--g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g-~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E 232 (423)
. .+.+.+-. ++. .+++.+.++.+ ..+ .+|.+| ++|+|+|+|+|.++++++++|||++|||++++|+++|
T Consensus 90 G~~~~~~~~r~~~g~--~g~~~~~~s~~----~~~-~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~E 162 (621)
T 2o1s_A 90 GRRDKIGTIRQKGGL--HPFPWRGESEY----DVL-SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFE 162 (621)
T ss_dssp TTGGGGGGTTSTTSC--CSSCCTTTCTT----CCS-CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHH
T ss_pred CCHhhhhcccccCCC--CCCCCCCCCCC----Ccc-CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHH
Confidence 1 12221111 122 23443322212 123 456666 5999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEEecCCcccccccccccC------------------------C----------chh-------hh-
Q psy4881 233 VYNIAKLWNIPCIFVCENNGYGMGTSSERASA------------------------S----------VDY-------YT- 270 (423)
Q Consensus 233 aLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~------------------------~----------~~~-------~~- 270 (423)
+||+|+++++|+|+||+||+|+|+++++.+.. . .+| .+
T Consensus 163 aL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~ 242 (621)
T 2o1s_A 163 AMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTL 242 (621)
T ss_dssp HHHHHHHHCCSEEEEEEECC--------------------------------------------------------CHHH
T ss_pred HHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhH
Confidence 99999999999999999999999887764210 0 011 12
Q ss_pred -hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCC
Q psy4881 271 -RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 321 (423)
Q Consensus 271 -~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~ 321 (423)
+++|++++ +|||||++++.+++++|++ .+||+|||+.|+|++||+..
T Consensus 243 ~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 243 FEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp HHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC
T ss_pred HHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChh
Confidence 67899998 9999999999999998874 58999999999999999853
No 24
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.88 E-value=1.5e-22 Score=219.65 Aligned_cols=146 Identities=22% Similarity=0.214 Sum_probs=111.1
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcCC----------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSGT----------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGY 253 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~~----------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~ 253 (423)
++..++|.+|+ +|+|+|+|+|.++.+. +++|+|++|||++++|+++|+|++|++++|| +|+|++||+|
T Consensus 149 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~ 228 (711)
T 3uk1_A 149 GVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI 228 (711)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 35557788885 9999999999997653 7899999999999999999999999999999 9999999999
Q ss_pred ccccccccccCCchhhh--hcCCCCeEE-eeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcC--
Q psy4881 254 GMGTSSERASASVDYYT--RGDYIPGIW-VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYR-- 328 (423)
Q Consensus 254 gi~~~~~~~~~~~~~~~--~a~G~~~~~-VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR-- 328 (423)
+|+.+++... .+++.+ ++||+++++ |||||++++.+|+++|+ +.++|+||+|.|+|++||+...+...|.
T Consensus 229 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~ 303 (711)
T 3uk1_A 229 SIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAK----RSDKPSLICCKTRIGNGAATKAGGHDVHGA 303 (711)
T ss_dssp ETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHT----TCSSCEEEEEEC------------------
T ss_pred ccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEccccccCCCCCCCcccccCC
Confidence 9988877653 467776 578999998 99999999999888775 5789999999999999998543333343
Q ss_pred --ChhHHHHH
Q psy4881 329 --TRDEIQEV 336 (423)
Q Consensus 329 --~~~e~~~~ 336 (423)
+++|++..
T Consensus 304 ~l~~e~~~~~ 313 (711)
T 3uk1_A 304 PLGADEIAKT 313 (711)
T ss_dssp --CHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 34555543
No 25
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.88 E-value=3.5e-23 Score=220.20 Aligned_cols=258 Identities=13% Similarity=0.068 Sum_probs=174.9
Q ss_pred cccCCCCCc-cccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC--cccCCccc
Q psy4881 22 CYPVEDTTE-KVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF--PFCDNSHK 98 (423)
Q Consensus 22 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~--p~cdg~H~ 98 (423)
++|.+| | +++|++++.+....+....++|.++.++.. +. .++...| +.+..+|+
T Consensus 247 ~~~~~~--p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~---------~~------------~~~~~~~~~~~~~~i~i 303 (566)
T 1ozh_A 247 AVNQDN--FSRFAGRVGLFNNQAGDRLLQLADLVICIGYS---------PV------------EYEPAMWNSGNATLVHI 303 (566)
T ss_dssp TCCTTT--CTTEEEECSSBTTCHHHHHHHHCSEEEEESCC---------GG------------GSCGGGTCCSCSEEEEE
T ss_pred cCCCCC--hHhhcCCCcccCCHHHHHHHHhCCEEEEECCC---------CC------------cCCccccCCCCCcEEEE
Confidence 466777 7 777777666554444444445555544431 10 1111112 13567899
Q ss_pred cccc-cccCcc---cceeecCCCccchhhcccCC---Cccccccc----------c-----CCCCC-CCHHHHHHHHHhh
Q psy4881 99 YHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRSIT----------Y-----PTPST-MSDSQVDKAIDKY 155 (423)
Q Consensus 99 ~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~~~----------~-----~~~~~-~~p~~vi~~l~~~ 155 (423)
++++ +++++. .+|++|++.+++.++..... ...|...+ . ....+ ++|..+++.|++.
T Consensus 304 d~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~ 383 (566)
T 1ozh_A 304 DVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDI 383 (566)
T ss_dssp ESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHH
T ss_pred eCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHh
Confidence 8888 577775 47888998888776543321 12353211 0 12234 8999999999999
Q ss_pred ccC-CeEEeCCC-CccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH
Q psy4881 156 VKE-NEYSQDSD-ENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV 233 (423)
Q Consensus 156 ~~~-~~~~~d~g-~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea 233 (423)
+++ +++++|.| .++|.... .... .++.++ ++++.|+|+.++++|+|++++.++++|||++|||+++++ +++
T Consensus 384 l~~~~iv~~d~G~~~~~~~~~---~~~~-~~~~~~-~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~--~~~ 456 (566)
T 1ozh_A 384 VNSDVTLTVDMGSFHIWIARY---LYTF-RARQVM-ISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQS--SME 456 (566)
T ss_dssp CCTTEEEEECSSHHHHHHHHT---GGGC-CCSEEE-CCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHH--TTH
T ss_pred CCCCCEEEEcCcHHHHHHHHh---cccC-CCCeEE-eCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhcc--HHH
Confidence 975 57778865 44552211 1111 233344 566678888888888888888899999999999999985 466
Q ss_pred HHHhHhcCCCEEEEEecCC-ccccccccc---------ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhC
Q psy4881 234 YNIAKLWNIPCIFVCENNG-YGMGTSSER---------ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRS 301 (423)
Q Consensus 234 Ln~A~~~~LPvi~Vv~NN~-~gi~~~~~~---------~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~ 301 (423)
|++|+++++|+++||.||+ |+|.+..+. ....++|.+ ++||+++++|+ +.+++.+++++|++
T Consensus 457 L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---- 530 (566)
T 1ozh_A 457 LETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD---- 530 (566)
T ss_dssp HHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----
T ss_pred HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----
Confidence 9999999999888888775 788775431 122467877 67899999998 67899998888874
Q ss_pred CCCcEEEEEEEecC
Q psy4881 302 DKGPILLETATYRY 315 (423)
Q Consensus 302 ~~gP~lIev~t~R~ 315 (423)
.+||+||||.|+|.
T Consensus 531 ~~gp~liev~~~~~ 544 (566)
T 1ozh_A 531 VDGPAVVAIPVDYR 544 (566)
T ss_dssp SSSCEEEEEEBCCT
T ss_pred CCCCEEEEEEeCCC
Confidence 68999999999873
No 26
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.88 E-value=2.5e-23 Score=221.01 Aligned_cols=259 Identities=14% Similarity=0.077 Sum_probs=173.7
Q ss_pred ccccCC-CCCccccccCCCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCC-c-ccCCcc
Q psy4881 21 TCYPVE-DTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF-P-FCDNSH 97 (423)
Q Consensus 21 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~-p-~cdg~H 97 (423)
.++|.+ | |+++|+++ .+....+. ..++|.++.++.+ ++. ...+....| + -+..+|
T Consensus 243 g~~~~~~~--p~~~G~~g-~~~~~~~~-~~~aDlvl~iG~~---------~~~---------~~~~~~~~~~~~~~~~i~ 300 (563)
T 2uz1_A 243 SMLSGLPD--AMRGGLVQ-NLYSFAKA-DAAPDLVLMLGAR---------FGL---------NTGHGSGQLIPHSAQVIQ 300 (563)
T ss_dssp GGGTTSCG--GGEEEEGG-GGGGTTTT-TCCCSEEEEESCC---------SSG---------GGTTTSCSSSCTTSEEEE
T ss_pred CcCCCCCC--hhhcCCCC-CCCHHHHh-hcCCCEEEEECCC---------Ccc---------cccccccccCCCCCeEEE
Confidence 357888 8 88988888 66665555 6667777766655 431 111122223 4 466789
Q ss_pred ccccc-cccCcc---cceeecCCCccchhhcccCC------Cccccc--------cc---c-C--CCCCCCHHHHHHHHH
Q psy4881 98 KYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL------PTPNRS--------IT---Y-P--TPSTMSDSQVDKAID 153 (423)
Q Consensus 98 ~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~------~~~~r~--------~~---~-~--~~~~~~p~~vi~~l~ 153 (423)
+++++ +++++. .++++|++.+++.++..... ...|.. .+ . . ....++|..+++.++
T Consensus 301 id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 380 (563)
T 2uz1_A 301 VDPDACELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIA 380 (563)
T ss_dssp ECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHH
T ss_pred EECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhhhhccccCCCcCHHHHHHHHH
Confidence 99988 577765 47888988887776543221 123321 11 0 1 112689999999999
Q ss_pred hhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcC--CCCEEEEEeCCCccchhh
Q psy4881 154 KYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSG--TKGVCFALYGDGAANQGQ 229 (423)
Q Consensus 154 ~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~--~~~~vv~~~GDGa~~~G~ 229 (423)
+.+++ +++++|.|. ++|.... .... .+++++ .+++.|+||.++++|+|++++. ++++|||++|||+++++
T Consensus 381 ~~l~~~~iv~~d~G~~~~~~~~~---~~~~-~~~~~~-~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~- 454 (563)
T 2uz1_A 381 KHVDAGVTVVADGALTYLWLSEV---MSRV-KPGGFL-CHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYS- 454 (563)
T ss_dssp TTCSTTEEEEECSSHHHHHHHHH---HTTS-CCSEEE-CCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGG-
T ss_pred HhCCCCcEEEEcCchHHHHHHHh---cccc-CCCeEE-CCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCC-
Confidence 99975 577888665 5552221 1221 233344 4444455555555555555544 88999999999999986
Q ss_pred HHHHHHHhHhcCCCEEEEEecCC-cccccccc-------ccc----CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHH
Q psy4881 230 VFEVYNIAKLWNIPCIFVCENNG-YGMGTSSE-------RAS----ASVDYYT--RGDYIPGIWVDGMDILAVREAARFA 295 (423)
Q Consensus 230 ~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~-------~~~----~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A 295 (423)
+++|++|+++++|+++||.||+ |++.+..+ +.. ..++|.+ ++||+++++|+ +.+++.+++++|
T Consensus 455 -~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a 531 (563)
T 2uz1_A 455 -IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQA 531 (563)
T ss_dssp -TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHH
Confidence 4679999999999887777665 78877543 221 2367776 67899999998 789999999888
Q ss_pred HHHhhCCCCcEEEEEEEec
Q psy4881 296 VNHCRSDKGPILLETATYR 314 (423)
Q Consensus 296 ~~~ar~~~gP~lIev~t~R 314 (423)
++ .+||+|||+.|++
T Consensus 532 ~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 532 LA----HNRPACINVAVAL 546 (563)
T ss_dssp HH----SSSCEEEEEECCS
T ss_pred HH----CCCCEEEEEEecc
Confidence 74 6899999999974
No 27
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.88 E-value=3.8e-22 Score=215.45 Aligned_cols=147 Identities=22% Similarity=0.204 Sum_probs=117.0
Q ss_pred eeeecCCCCCC-cHHHHHHHHHHHhcCC----------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCc
Q psy4881 186 QLVTVTNQLVT-VPLGVGIALAAKYSGT----------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGY 253 (423)
Q Consensus 186 ~~~~~sg~~g~-l~~A~GaA~a~k~~~~----------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~ 253 (423)
++..++|.+|+ +|+|+|+|+|.++.+. +++|+|++|||++++|+++|+|++|++++|| +|+|++||+|
T Consensus 110 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~ 189 (663)
T 3kom_A 110 GVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI 189 (663)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-
T ss_pred CcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 34557788885 9999999999997653 7899999999999999999999999999999 9999999999
Q ss_pred ccccccccccCCchhhh--hcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCc---
Q psy4881 254 GMGTSSERASASVDYYT--RGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSY--- 327 (423)
Q Consensus 254 gi~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~Y--- 327 (423)
+|+++++... .+++.+ ++||++++ +|||||++++.+|+++|++ ..++|+||+|+|+|++||+...+...|
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~ 265 (663)
T 3kom_A 190 SIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHS---QQQKPTLICCKTVIGFGSPEKAGTASVHGS 265 (663)
T ss_dssp ----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CSSSCEEEEEECCTTTTCTTTTTCSSTTSS
T ss_pred ccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEEecccccccCCCCCCccccCC
Confidence 9998877543 467776 57899999 9999999999999888763 258999999999999999854332222
Q ss_pred -CChhHHHHH
Q psy4881 328 -RTRDEIQEV 336 (423)
Q Consensus 328 -R~~~e~~~~ 336 (423)
-+++|++..
T Consensus 266 ~l~~e~~~~~ 275 (663)
T 3kom_A 266 PLSDQERASA 275 (663)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 245666543
No 28
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.87 E-value=5.6e-22 Score=214.94 Aligned_cols=148 Identities=23% Similarity=0.240 Sum_probs=125.1
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcC----------CCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSG----------TKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~----------~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
+..++|.+|+ +|+|+|+|+|.++.+ ++++|+|++|||++++|+++|+|++|+.++|| +|+|++||+|+
T Consensus 122 ~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~ 201 (675)
T 1itz_A 122 VEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHIS 201 (675)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred eeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCcc
Confidence 4456777875 999999999998876 78999999999999999999999999999995 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeE-EeeCC-CHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCC----C
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGI-WVDGM-DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT----S 326 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~-~VdG~-d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~----~ 326 (423)
|+.+..... ..++.+ ++||++++ +|||| |++++.+|+++|++ ..++|+||+++|+|++||+...++. .
T Consensus 202 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~ 277 (675)
T 1itz_A 202 IDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSVHGS 277 (675)
T ss_dssp TTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred CCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcccccCC
Confidence 988877654 567776 67899999 99999 99999999998874 2589999999999999998533322 2
Q ss_pred cCChhHHHHHHh
Q psy4881 327 YRTRDEIQEVRQ 338 (423)
Q Consensus 327 YR~~~e~~~~~~ 338 (423)
+++++|++.+++
T Consensus 278 ~~~~e~~~~~~~ 289 (675)
T 1itz_A 278 ALGAKEVEATRQ 289 (675)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 567788877663
No 29
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.86 E-value=9.2e-22 Score=211.31 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=114.5
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcCC-------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSGT-------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~~-------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+..++|.+|+ +|+|+|+|+|.++.+. +++|+|++|||++++|+++|+|++|++++|| +|+|++||+|+|+.
T Consensus 109 ~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~ 188 (632)
T 3l84_A 109 VEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEG 188 (632)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred cccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCccccc
Confidence 4456788885 9999999999998753 8999999999999999999999999999998 99999999999998
Q ss_pred ccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCC
Q psy4881 258 SSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 321 (423)
Q Consensus 258 ~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~ 321 (423)
+++... .+++.+ ++||+++++|||||++++.+|+++|+ +.++|+||+|+|+|++||+..
T Consensus 189 ~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~----~~~~P~lI~v~T~kG~G~~~~ 249 (632)
T 3l84_A 189 DVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAK----KSTKPCLIIAKTTIAKGAGEL 249 (632)
T ss_dssp EGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHH----TCSSCEEEEEECCTTTTCGGG
T ss_pred chhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH----hCCCCEEEEEeeEeeecCCCC
Confidence 877543 456776 67899999999999999999888876 578999999999999999854
No 30
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.86 E-value=1.1e-21 Score=212.53 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=120.2
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcCC----------CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSGT----------KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYG 254 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~~----------~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~g 254 (423)
...++|.+|+ +|+|+|+|+|.++.+. +++|+|++|||++++|+++|+|++|++++|| +|+|++||+|+
T Consensus 135 v~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~ 214 (690)
T 3m49_A 135 VDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDIS 214 (690)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBC
T ss_pred cccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCee
Confidence 4456787885 9999999999997653 8899999999999999999999999999998 99999999999
Q ss_pred cccccccccCCchhhh--hcCCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcC---
Q psy4881 255 MGTSSERASASVDYYT--RGDYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYR--- 328 (423)
Q Consensus 255 i~~~~~~~~~~~~~~~--~a~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR--- 328 (423)
|+++++... .+++.+ ++||+++++| ||||++++.+|+++|++ ..++|+||+|+|+|++|++...+...|.
T Consensus 215 i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~ 290 (690)
T 3m49_A 215 LDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASHGSP 290 (690)
T ss_dssp SSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSC
T ss_pred cccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccccCCC
Confidence 998876543 456776 5789999999 99999999998887763 2689999999999999997543332232
Q ss_pred -ChhHHHHHH
Q psy4881 329 -TRDEIQEVR 337 (423)
Q Consensus 329 -~~~e~~~~~ 337 (423)
+++|++..+
T Consensus 291 ~~~e~~~~~~ 300 (690)
T 3m49_A 291 LGVEETKLTK 300 (690)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 345555443
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.86 E-value=1.7e-22 Score=215.05 Aligned_cols=211 Identities=14% Similarity=0.079 Sum_probs=150.7
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccCC--Cccc------cccc------c-CCCCCCCHHHHHHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL--PTPN------RSIT------Y-PTPSTMSDSQVDKA 151 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~--~~~~------r~~~------~-~~~~~~~p~~vi~~ 151 (423)
+.+..+|+++++ +++++. .++++|.+.+++.++..... ...| +..+ . .....++|.++++.
T Consensus 311 ~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (573)
T 2iht_A 311 IEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDS 390 (573)
T ss_dssp SCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHHHTCCCCCSSSBCHHHHHHH
T ss_pred CCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhhhhccccCcCCcCHHHHHHH
Confidence 345678998888 577765 36888988887766443211 2334 1111 1 11235899999999
Q ss_pred HHhhcc------CCeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 152 IDKYVK------ENEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 152 l~~~~~------~~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
|++.++ +.++++|.|. .+|.... .... .++.++ .+++.|+||.++++|+|++++.++++|||++|||+
T Consensus 391 l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~---~~~~-~~~~~~-~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~ 465 (573)
T 2iht_A 391 MNTVMEEAAEPGEGTIVSDIGFFRHYGVLF---ARAD-QPFGFL-TSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGG 465 (573)
T ss_dssp HHHHHHHHSCTTCCEEEECSSHHHHHHHHH---CCCC-STTSEE-CCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHH
T ss_pred HHHhcccccCCCCcEEEEcCcHhHHHHHHh---cCcC-CCCeEE-cCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHH
Confidence 999886 4578888554 4452211 1111 223344 55667788888888888888888999999999999
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCC-cccccccc-----------cccCCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSE-----------RASASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~-----------~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
++++ +++|++|+++++|+++||.||+ |+|.+..+ .....++|.+ ++||+++++|+ +.+++.+
T Consensus 466 ~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~ 541 (573)
T 2iht_A 466 FHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLA 541 (573)
T ss_dssp HHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHH
T ss_pred HHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHH
Confidence 9986 4679999999999877777776 78877542 1222467776 67899999998 7889988
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 291 AARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R 314 (423)
++++|+ +.+||+||||.|+|
T Consensus 542 al~~a~----~~~gp~liev~~~~ 561 (573)
T 2iht_A 542 ALRKGA----ELGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHH----TSSSCEEEEEEBCC
T ss_pred HHHHHH----hCCCCEEEEEECCC
Confidence 888876 57899999999988
No 32
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.86 E-value=7.6e-22 Score=208.95 Aligned_cols=261 Identities=11% Similarity=0.038 Sum_probs=162.2
Q ss_pred ccccccCCCCCCCCccc-ccCCCccccceeeccCCcee--eeeEeecCCcchhhhhhhcccCCC-cccCCccccccc-cc
Q psy4881 30 EKVFGPLDYENIPSEEF-WGTEPRRLINKYYSKHHDVV--TDRFTIDTGIHTEAICRCWKSKKF-PFCDNSHKYHNK-FH 104 (423)
Q Consensus 30 ~~~~g~~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~--~~~~~~d~~~~~~~~c~~~rs~~~-p~cdg~H~~~~~-~~ 104 (423)
++-.|.++.++|.+.++ .|..+....|..+++.|.++ +.+++. ........+ +.+..+|+++++ ++
T Consensus 244 ~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~---------~~~~~~~~~~~~~~~i~id~d~~~~ 314 (552)
T 1ovm_A 244 LMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTD---------TLTAGFTHQLTPAQTIEVQPHAARV 314 (552)
T ss_dssp GGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCT---------TTTTTTCCCCCTTTEEEECSSEEEE
T ss_pred cccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCc---------ccccccccCCCCCeEEEEeCChhee
Confidence 34444444444444443 24444444555555555444 233441 001111112 345667888888 57
Q ss_pred cCcccceeecCCCccchhhcccC-CCccccc----cc---c-CCCCCCCHHHHHHHHHhhcc-CCeEEeCCCCccccccc
Q psy4881 105 KDNVGPLIIDGNTFPDYVLDKYT-LPTPNRS----IT---Y-PTPSTMSDSQVDKAIDKYVK-ENEYSQDSDENMTNQLV 174 (423)
Q Consensus 105 g~nvgpl~~d~~~vl~~~l~~~~-~~~~~r~----~~---~-~~~~~~~p~~vi~~l~~~~~-~~~~~~d~g~~~~~~~~ 174 (423)
+++..+ .++.+.+++.++. .. ....|.. .+ . .....++|..+++.|++.++ ++++++|.|..++....
T Consensus 315 ~~~~~~-~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~ 392 (552)
T 1ovm_A 315 GDVWFT-GIPMNQAIETLVE-LCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAID 392 (552)
T ss_dssp TTEEEE-SCCHHHHHHHHHH-HHHTSCCC--------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTT
T ss_pred CCcccC-CccHHHHHHHHHh-CcccccchhhhhhhccccccCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHHHh
Confidence 765532 2222344443332 10 1122321 11 1 12345899999999999996 46788886654441111
Q ss_pred cccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-c
Q psy4881 175 TVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-Y 253 (423)
Q Consensus 175 ~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~ 253 (423)
.... .++.++ ++++.|+|+.++++|+|++++.++++|||++|||+++++ +++|.+|+++++|+++||.||+ |
T Consensus 393 ---~~~~-~~~~~~-~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~ 465 (552)
T 1ovm_A 393 ---LRLP-ADVNFI-VQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGY 465 (552)
T ss_dssp ---CCCC-SSCEEE-CCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSC
T ss_pred ---cccC-CCCeEE-echhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCC
Confidence 1111 223344 667788899999999999999999999999999999885 5669999999999888777665 7
Q ss_pred ccccccc----c--ccCCchhhh--hcCCC----CeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEec
Q psy4881 254 GMGTSSE----R--ASASVDYYT--RGDYI----PGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 254 gi~~~~~----~--~~~~~~~~~--~a~G~----~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R 314 (423)
+|.+... . ....++|.+ ++||+ ++++|+ +.+++.+++++|+ +.+||+||||.|++
T Consensus 466 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 466 TVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp HHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred eEEEeeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 8875432 1 113467777 67899 899998 6889888887765 57899999999976
No 33
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.85 E-value=2e-21 Score=208.49 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=111.8
Q ss_pred ecCCCCCC-cHHHHHHHHHHHhcCC-CCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCcccccccccccCC
Q psy4881 189 TVTNQLVT-VPLGVGIALAAKYSGT-KGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 189 ~~sg~~g~-l~~A~GaA~a~k~~~~-~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
.++|.+|+ +|+|+|+|+|.++.+. +++|+|++|||++++|++||+|++|++++|| +++|++||+|+++.+.......
T Consensus 118 ~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~ 197 (616)
T 3mos_A 118 VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQM 197 (616)
T ss_dssp SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCH
T ss_pred ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccCh
Confidence 35677775 9999999999987655 6899999999999999999999999999998 7888899999998877655555
Q ss_pred chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCC
Q psy4881 266 VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPG 324 (423)
Q Consensus 266 ~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~ 324 (423)
++|.+ ++||+++++|||||++++.++++++ .++|+||||+|+|++||+..+++
T Consensus 198 ~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~ 252 (616)
T 3mos_A 198 DIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDK 252 (616)
T ss_dssp HHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTC
T ss_pred HHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCc
Confidence 67776 6789999999999999999888543 47999999999999999865543
No 34
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.85 E-value=6.3e-22 Score=210.35 Aligned_cols=260 Identities=14% Similarity=0.112 Sum_probs=164.0
Q ss_pred cccCCCCCccccccC-CCCCCCCcccccCCCccccceeeccCCceeeeeEeecCCcchhhhhhhcccCCCcccCCccccc
Q psy4881 22 CYPVEDTTEKVFGPL-DYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYH 100 (423)
Q Consensus 22 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~ 100 (423)
++|.+| |+++|++ +..+....+....++|.++.++.+ +.. +. . ..+. ...+.+..+|+++
T Consensus 249 ~~~~~~--p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~---------~~~-----~~-~-~~~~-~~~~~~~~i~id~ 309 (566)
T 2vbi_A 249 FFPEDH--AGFRGLYWGEVSNPGVQELVETSDALLCIAPV---------FND-----YS-T-VGWS-AWPKGPNVILAEP 309 (566)
T ss_dssp SSCTTS--TTEEEEECGGGSCTTHHHHHHTCSEEEEESCC---------CBT-----TT-T-TTTT-SCCCSTTEEEECS
T ss_pred cCCCCC--ccccccccCccCCHHHHHHHHhCCEEEEECCC---------ccc-----cc-c-cccc-ccCCCCcEEEEeC
Confidence 466666 6666652 444444444444445555444433 441 00 0 0111 1124456678888
Q ss_pred cc-cccCcccceeecCCCccchhhcccCC-Ccc---ccccc---c--CCCCCCCHHHHHHHHHhhccC-CeEEeCCCCcc
Q psy4881 101 NK-FHKDNVGPLIIDGNTFPDYVLDKYTL-PTP---NRSIT---Y--PTPSTMSDSQVDKAIDKYVKE-NEYSQDSDENM 169 (423)
Q Consensus 101 ~~-~~g~nvgpl~~d~~~vl~~~l~~~~~-~~~---~r~~~---~--~~~~~~~p~~vi~~l~~~~~~-~~~~~d~g~~~ 169 (423)
++ +++++. +..++.+.+++.++..... ... |+... . .....++|+.+++.|++.+++ +++++|.|..+
T Consensus 310 d~~~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~ 388 (566)
T 2vbi_A 310 DRVTVDGRA-YDGFTLRAFLQALAEKAPARPASAQKSSVPTCSLTATSDEAGLTNDEIVRHINALLTSNTTLVAETGDSW 388 (566)
T ss_dssp SEEEETTEE-EESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCCCCCCCTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHH
T ss_pred ChheeCCcc-cCCccHHHHHHHHHHhccccccchhhhhhhhhccCCCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHH
Confidence 88 566543 2222233344443322211 112 21110 0 112458999999999999975 57788866544
Q ss_pred ccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEe
Q psy4881 170 TNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCE 249 (423)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~ 249 (423)
|.... .... .+..++ ++++.|+|+.++++|+|++++.++++|||++|||+++++ +++|++|+++++|+++||.
T Consensus 389 ~~~~~---~~~~-~~~~~~-~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~ 461 (566)
T 2vbi_A 389 FNAMR---MTLP-RGARVE-LEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLI 461 (566)
T ss_dssp HHHHT---CCCC-TTCEEE-CCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEE
T ss_pred Hhhhh---eECC-CCCEEE-ecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEE
Confidence 41111 1111 123344 566778899999999999999999999999999999985 4669999999999777776
Q ss_pred cC-Ccccccccccc----cCCchhhh--hcCCC-----CeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEec
Q psy4881 250 NN-GYGMGTSSERA----SASVDYYT--RGDYI-----PGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATYR 314 (423)
Q Consensus 250 NN-~~gi~~~~~~~----~~~~~~~~--~a~G~-----~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~R 314 (423)
|| +|+|.+..+.. ...++|.+ ++||+ ++++|+ +.+++.+++++|++ . +||+||||.|+|
T Consensus 462 nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~----~~~gp~liev~~~~ 533 (566)
T 2vbi_A 462 NNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKA----NTRGPTLIECQIDR 533 (566)
T ss_dssp ECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred ECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHh----cCCCcEEEEEEeCc
Confidence 66 57887765421 22457776 67899 999998 78999999988874 4 799999999976
No 35
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.85 E-value=5.2e-22 Score=210.78 Aligned_cols=211 Identities=9% Similarity=-0.001 Sum_probs=133.6
Q ss_pred cccCCccccccc-cccCcccceeecCCCccchhhccc-------CCCccccccc---cC-CCCCCCHHHHHHHHHhhccC
Q psy4881 91 PFCDNSHKYHNK-FHKDNVGPLIIDGNTFPDYVLDKY-------TLPTPNRSIT---YP-TPSTMSDSQVDKAIDKYVKE 158 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nvgpl~~d~~~vl~~~l~~~-------~~~~~~r~~~---~~-~~~~~~p~~vi~~l~~~~~~ 158 (423)
+.+..+|++.++ +++++.. ...+.+.+++.++... .....|+..+ .. ....++|.++++.|++.+++
T Consensus 302 ~~~~~i~id~d~~~~~~~~~-~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 380 (563)
T 2vk8_A 302 KTKNIVEFHSDHMKIRNATF-PGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQE 380 (563)
T ss_dssp CCSCEEEECSSEEEETTEEE-ETCCHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCCCCCCTTCBCCHHHHHHHHTTTCCT
T ss_pred CCCeEEEEeCCceEECCccc-CCcCHHHHHHHHHHhhccccchhhhhhhhhhcccccCCCCCCCcCHHHHHHHHHHhCCC
Confidence 446678998888 5776642 2223344444333211 0011222111 11 23468999999999999964
Q ss_pred -CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHH----HHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHH
Q psy4881 159 -NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPL----GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEV 233 (423)
Q Consensus 159 -~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~----A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~Ea 233 (423)
+++++|.|..+|... +.... .++.++ ++++.|+||. |+|+|+|.+.++.+++|||++|||+++++ +++
T Consensus 381 ~~iv~~d~G~~~~~~~---~~~~~-~~~~~~-~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~e 453 (563)
T 2vk8_A 381 GDVVIAETGTSAFGIN---QTTFP-NNTYGI-SQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQE 453 (563)
T ss_dssp TCEEEECTTHHHHHGG---GSCCC-SSCEEE-CCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGG
T ss_pred CCEEEECCchHHHHHh---hcCcC-CCCeEE-cccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHH
Confidence 678888765544111 11111 223344 4444555555 55555554444455999999999999885 566
Q ss_pred HHHhHhcCCCEEEEEecCC-ccccccccc----c--cCCchhhh--hcCCCC---eEEeeCCCHHHHHHHHH-HHHHHhh
Q psy4881 234 YNIAKLWNIPCIFVCENNG-YGMGTSSER----A--SASVDYYT--RGDYIP---GIWVDGMDILAVREAAR-FAVNHCR 300 (423)
Q Consensus 234 Ln~A~~~~LPvi~Vv~NN~-~gi~~~~~~----~--~~~~~~~~--~a~G~~---~~~VdG~d~~~v~~al~-~A~~~ar 300 (423)
|++|+++++|+++||.||+ |+|.+..+. . ...++|.+ ++||++ +++|+ +.+++.++++ ++++
T Consensus 454 l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~--- 528 (563)
T 2vk8_A 454 ISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN--- 528 (563)
T ss_dssp HHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---
T ss_pred HHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---
Confidence 9999999999888887765 788664321 1 12457776 678999 99999 6888888887 6652
Q ss_pred CCCCcEEEEEEEec
Q psy4881 301 SDKGPILLETATYR 314 (423)
Q Consensus 301 ~~~gP~lIev~t~R 314 (423)
..++|+||||.|++
T Consensus 529 ~~~~p~liev~~~~ 542 (563)
T 2vk8_A 529 DNSKIRMIEVMLPV 542 (563)
T ss_dssp SCSSEEEEEEECCT
T ss_pred CCCCcEEEEEEeCc
Confidence 23479999999975
No 36
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.84 E-value=3.2e-21 Score=205.08 Aligned_cols=210 Identities=10% Similarity=0.025 Sum_probs=143.8
Q ss_pred cccCCccccccc-cccCcccceeecCCCccchhhcccCCCcccccc------c-cCCCCCCCHHHHHHHHHhhccC-CeE
Q psy4881 91 PFCDNSHKYHNK-FHKDNVGPLIIDGNTFPDYVLDKYTLPTPNRSI------T-YPTPSTMSDSQVDKAIDKYVKE-NEY 161 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nvgpl~~d~~~vl~~~l~~~~~~~~~r~~------~-~~~~~~~~p~~vi~~l~~~~~~-~~~ 161 (423)
+.+..+|+++++ +++++. +..+|.+.+++.++...... .|+.. . ......++|..+++.|++.+++ +++
T Consensus 319 ~~~~~i~id~d~~~~~~~~-~~~~~~~~~l~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv 396 (570)
T 2vbf_A 319 DENKMISLNIDEGIIFNKV-VEDFDFRAVVSSLSELKGIE-YEGQYIDKQYEEFIPSSAPLSQDRLWQAVESLTQSNETI 396 (570)
T ss_dssp CGGGEEEECSSCEEETTEE-ECSSCHHHHHHTGGGCCSCC-CCSCCCCCCCCCCCCCSSBCCHHHHHHHHHHHCCSSEEE
T ss_pred CCCeEEEEeCCHHHhCCee-ecCCCHHHHHHHHHHhcccc-ccccchhhhccccCCCCCCcCHHHHHHHHHHhcCCCCEE
Confidence 445677888888 577665 33345555555443322111 13210 0 0112358999999999999975 578
Q ss_pred EeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcC
Q psy4881 162 SQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWN 241 (423)
Q Consensus 162 ~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~ 241 (423)
++|.|..++..+. .... .++.++ ++++.|+|+.++++|+|++++.++++|||++|||+++++ +++|++|++++
T Consensus 397 ~~d~G~~~~~~~~---~~~~-~~~~~~-~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~--~~eL~ta~~~~ 469 (570)
T 2vbf_A 397 VAEQGTSFFGAST---IFLK-SNSRFI-GQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLT--VQELGLSIREK 469 (570)
T ss_dssp EECTTHHHHHHTT---SCCC-TTCEEE-CCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHH--GGGHHHHHHTT
T ss_pred EEeCCHHHHHHHh---cccC-CCCeEe-cCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcC--HHHHHHHHHcC
Confidence 8887665442111 1111 223344 567778899999999998888999999999999999985 46699999999
Q ss_pred CCEEEEEecC-Cccccccccc----c--cCCchhhh--hcCCCC-----eEEeeCCCHHHHHHHHHHHHHHhhCCCCcEE
Q psy4881 242 IPCIFVCENN-GYGMGTSSER----A--SASVDYYT--RGDYIP-----GIWVDGMDILAVREAARFAVNHCRSDKGPIL 307 (423)
Q Consensus 242 LPvi~Vv~NN-~~gi~~~~~~----~--~~~~~~~~--~a~G~~-----~~~VdG~d~~~v~~al~~A~~~ar~~~gP~l 307 (423)
+|+++||.|| +|+|.+..+. + ...++|.+ ++||++ +++|+ +.+++.++++++. ++.+||+|
T Consensus 470 l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~l 544 (570)
T 2vbf_A 470 LNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYW 544 (570)
T ss_dssp CCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEE
T ss_pred CCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEE
Confidence 9977777766 5788764431 1 12467776 678998 79998 6889988888742 25789999
Q ss_pred EEEEEec
Q psy4881 308 LETATYR 314 (423)
Q Consensus 308 Iev~t~R 314 (423)
||+.|+|
T Consensus 545 iev~~~~ 551 (570)
T 2vbf_A 545 IELVLEK 551 (570)
T ss_dssp EEEECCT
T ss_pred EEEEcCc
Confidence 9999976
No 37
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.84 E-value=1e-21 Score=208.78 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=149.6
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccC----CCccccccc----------c-----CC--CCCCCHH
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT----LPTPNRSIT----------Y-----PT--PSTMSDS 146 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~----~~~~~r~~~----------~-----~~--~~~~~p~ 146 (423)
.+..+|+++++ +++++. .++++|++.+++.++.... ....|+..+ . .. ..+++|.
T Consensus 299 ~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (568)
T 2c31_A 299 LKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYS 378 (568)
T ss_dssp CCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHH
T ss_pred CCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHH
Confidence 46678999998 577765 4788899888776654321 123343211 0 12 3468999
Q ss_pred HHHHHHHhhc--cCC-eEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 147 QVDKAIDKYV--KEN-EYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 147 ~vi~~l~~~~--~~~-~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
.++..|++.+ +++ +++.|+++.+|.... ..... .++.++ .+|+.|+||.++|+|+|++++ ++++||+++|||
T Consensus 379 ~~~~~l~~~l~~~~~~iv~~dg~~~~~~~~~--~~~~~-~p~~~~-~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDG 453 (568)
T 2c31_A 379 NSLGVVRDFMLANPDISLVNEGANALDNTRM--IVDML-KPRKRL-DSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDS 453 (568)
T ss_dssp HHHHHHHHHHHHCCSSEEEEESSHHHHHHHH--HCCCC-STTCEE-ESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHH
T ss_pred HHHHHHHHHhcCCCCeEEEECChhHHHHHHH--Hhccc-CCCeEE-cCCCCccccccHHHHHHHHhC-CCCcEEEEEcch
Confidence 9999999998 754 566676666551110 01111 233344 677788888888888888887 889999999999
Q ss_pred ccchhhHHHHHHHhHhcCCCEEEEEecCC-c-ccccccc----cc----cCCchhhh--hcCCCCeEEeeCCCHHHHHHH
Q psy4881 224 AANQGQVFEVYNIAKLWNIPCIFVCENNG-Y-GMGTSSE----RA----SASVDYYT--RGDYIPGIWVDGMDILAVREA 291 (423)
Q Consensus 224 a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~-gi~~~~~----~~----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~a 291 (423)
++++. +++|++|+++++|+++||.||+ | ++. ..+ +. ...++|.+ ++||+++++|+ +.+++.++
T Consensus 454 sf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~a 528 (568)
T 2c31_A 454 AFGFS--GMELETICRYNLPVTVIIMNNGGIYKGN-EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAA 528 (568)
T ss_dssp HHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSC-CCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHH
T ss_pred Hhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHH-HHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHH
Confidence 99885 4669999999999999999887 3 332 222 11 23467877 67899999998 78999999
Q ss_pred HHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 292 ARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 292 l~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
+++|++ .+||+||||.|+|.
T Consensus 529 l~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 529 LEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp HHHHHH----HTSCEEEEEEBCTT
T ss_pred HHHHHh----CCCCEEEEEEeccc
Confidence 998874 57999999999874
No 38
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.84 E-value=2.7e-21 Score=205.35 Aligned_cols=213 Identities=14% Similarity=0.081 Sum_probs=150.6
Q ss_pred cccCCccccccc-cccCcc---cceeecCCCccchhhcccC-----CCccccccc---------------cCCCCCCCHH
Q psy4881 91 PFCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT-----LPTPNRSIT---------------YPTPSTMSDS 146 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~-----~~~~~r~~~---------------~~~~~~~~p~ 146 (423)
+-+..+|+++++ +++++. .++++|.+.+++.++.... ....|...+ .....+++|.
T Consensus 294 ~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (564)
T 2q28_A 294 ADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYF 373 (564)
T ss_dssp TTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHH
T ss_pred CCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHH
Confidence 456778999999 577765 4788999888776644321 123343210 1123468999
Q ss_pred HHHHHHHhhc--cCC-eEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy4881 147 QVDKAIDKYV--KEN-EYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDG 223 (423)
Q Consensus 147 ~vi~~l~~~~--~~~-~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDG 223 (423)
+++..+++.+ +++ +++.|+++++|.... ..... .++.++ .+|+.|+||.++|+|+|++++ ++++|||++|||
T Consensus 374 ~~~~~l~~~l~~~~d~ivv~dg~~~~~~~~~--~~~~~-~p~~~~-~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDG 448 (564)
T 2q28_A 374 NALSAVRDVLRENQDIYLVNEGANTLDNARN--IIDMY-KPRRRL-DCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDS 448 (564)
T ss_dssp HHHHHHHHHHTTCTTCEEEEESSHHHHHHHH--HSCCC-SSSCEE-ESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCchHHHHHHH--Hhccc-CCCeEe-cCCCCCcccchHHHHHHHhhc-CCCcEEEEEcch
Confidence 9999999998 654 566676666651111 01111 233344 677788888888888888887 889999999999
Q ss_pred ccchhhHHHHHHHhHhcCCCEEEEEecCC-c-cccccc----ccc-----cCCchhhh--hcCCCCeEEeeCCCHHHHHH
Q psy4881 224 AANQGQVFEVYNIAKLWNIPCIFVCENNG-Y-GMGTSS----ERA-----SASVDYYT--RGDYIPGIWVDGMDILAVRE 290 (423)
Q Consensus 224 a~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~-gi~~~~----~~~-----~~~~~~~~--~a~G~~~~~VdG~d~~~v~~ 290 (423)
++++. .++|++|+++++|+++||.||+ | ++.... .+. ...++|.+ ++||+++++|+ +.+++.+
T Consensus 449 sf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~ 524 (564)
T 2q28_A 449 AFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRH 524 (564)
T ss_dssp HHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHH
T ss_pred Hhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHH
Confidence 99885 3669999999999999998887 3 443211 011 12467777 67899999998 7899999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEecCC
Q psy4881 291 AARFAVNHCRSDKGPILLETATYRYS 316 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R~~ 316 (423)
++++|++ .+||+||||.|.|..
T Consensus 525 al~~a~~----~~~p~liev~~~~~~ 546 (564)
T 2q28_A 525 ALTTGIQ----SRKPTIINVVIDPAA 546 (564)
T ss_dssp HHHHHHH----HTSCEEEEEEBCTTS
T ss_pred HHHHHHh----CCCCEEEEEEecccc
Confidence 9998874 479999999998743
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.83 E-value=4.3e-21 Score=204.07 Aligned_cols=211 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred cccCCccccccc-cccCcccceeecCCCccchhhcccCC-Cccc---cc----c----ccC-CCCCCCHHHHHHHHHhhc
Q psy4881 91 PFCDNSHKYHNK-FHKDNVGPLIIDGNTFPDYVLDKYTL-PTPN---RS----I----TYP-TPSTMSDSQVDKAIDKYV 156 (423)
Q Consensus 91 p~cdg~H~~~~~-~~g~nvgpl~~d~~~vl~~~l~~~~~-~~~~---r~----~----~~~-~~~~~~p~~vi~~l~~~~ 156 (423)
+.+..+|+++++ +++++. +..++.+.+++.++..... ...| +. . ... ....++|+++++.|++.+
T Consensus 300 ~~~~~i~id~d~~~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 378 (568)
T 2wvg_A 300 DPKKLVLAEPRSVVVNGIR-FPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALL 378 (568)
T ss_dssp CTTTEEEECSSEEEETTEE-EESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTC
T ss_pred CCCcEEEEeCChhhcCCee-cCCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhC
Confidence 445667888888 566543 2222333444443322211 1112 10 0 111 134589999999999999
Q ss_pred cC-CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHH
Q psy4881 157 KE-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235 (423)
Q Consensus 157 ~~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn 235 (423)
++ +++++|.|..+|.... ... +.+..++ ++++.|+|+.++++|+|++++.++++|||++|||+++++ +++|+
T Consensus 379 ~~~~iv~~d~G~~~~~~~~---~~~-~~~~~~~-~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~--~~el~ 451 (568)
T 2wvg_A 379 TPNTTVIAETGDSWFNAQR---MKL-PNGARVE-YEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLT--AQEVA 451 (568)
T ss_dssp CTTEEEEECSSHHHHHHHT---CCC-CTTCEEE-CCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHH--GGGHH
T ss_pred CCCCEEEEcCcHHHHHHhh---ccc-CCCCeEE-eCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhcc--HHHHH
Confidence 75 5778886654441111 111 1123343 566778888888888888888899999999999999985 46699
Q ss_pred HhHhcCCCEEEEEecC-Ccccccccccc----cCCchhhh--hcCCC---------CeEEeeCCCHHHHHHHHHHHHHHh
Q psy4881 236 IAKLWNIPCIFVCENN-GYGMGTSSERA----SASVDYYT--RGDYI---------PGIWVDGMDILAVREAARFAVNHC 299 (423)
Q Consensus 236 ~A~~~~LPvi~Vv~NN-~~gi~~~~~~~----~~~~~~~~--~a~G~---------~~~~VdG~d~~~v~~al~~A~~~a 299 (423)
+|+++++|+++||.|| +|+|.+..+.. ...++|.+ ++||+ ++++|+ +.+++.+++++|++.
T Consensus 452 ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~- 528 (568)
T 2wvg_A 452 QMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN- 528 (568)
T ss_dssp HHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC-
T ss_pred HHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc-
Confidence 9999999977777655 57887765421 23457776 67888 899998 789999999888742
Q ss_pred hCCCCcEEEEEEEec
Q psy4881 300 RSDKGPILLETATYR 314 (423)
Q Consensus 300 r~~~gP~lIev~t~R 314 (423)
.+||+||||.|+|
T Consensus 529 --~~gp~liev~~~~ 541 (568)
T 2wvg_A 529 --TDGPTLIECFIGR 541 (568)
T ss_dssp --CSSCEEEEEECCT
T ss_pred --CCCcEEEEEEcCc
Confidence 2799999999976
No 40
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.83 E-value=6.4e-21 Score=202.73 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=121.1
Q ss_pred CCCCHHHHHHHHHhhccC---CeE-EeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEE
Q psy4881 141 STMSDSQVDKAIDKYVKE---NEY-SQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVC 216 (423)
Q Consensus 141 ~~~~p~~vi~~l~~~~~~---~~~-~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~v 216 (423)
..++|..+++.|++.+++ +++ ++|.|..+|.... + .++.++ ++++.|+||+++++|+|++++.++++|
T Consensus 372 ~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~~~~~------~-~~~~~~-~~~~~g~mG~~l~~A~G~ala~~~~~v 443 (565)
T 2nxw_A 372 EPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMD------M-IDAGLM-APGYYAGMGFGVPAGIGAQCVSGGKRI 443 (565)
T ss_dssp SBCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHHTT------S-CCSCEE-CCTTTCCTTCHHHHHHHHHHHTTTCCE
T ss_pred CccCHHHHHHHHHHhcccccCCEEEEecchHHHHHHHh------C-CCcEEE-ccCccccccccchHHHHHHHhCCCCcE
Confidence 458999999999999864 566 7886655442111 1 122334 566678888888888888888899999
Q ss_pred EEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCC-ccccccccc-----ccCCchhhh--hcCCCCeEEeeCCCHHHH
Q psy4881 217 FALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSSER-----ASASVDYYT--RGDYIPGIWVDGMDILAV 288 (423)
Q Consensus 217 v~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~~~-----~~~~~~~~~--~a~G~~~~~VdG~d~~~v 288 (423)
||++|||+++++ +++|++|+++++|+++||.||+ |++.+..+. ....++|.+ ++||+++++|+ +.+++
T Consensus 444 v~i~GDG~~~~~--~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el 519 (565)
T 2nxw_A 444 LTVVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAEL 519 (565)
T ss_dssp EEEEEHHHHHHH--GGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHH
T ss_pred EEEEechHHHhh--HHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHH
Confidence 999999999874 5779999999999777777665 788765432 123467877 67899999998 68999
Q ss_pred HHHHHHHHHHhhCCCCcE-EEEEEEec
Q psy4881 289 REAARFAVNHCRSDKGPI-LLETATYR 314 (423)
Q Consensus 289 ~~al~~A~~~ar~~~gP~-lIev~t~R 314 (423)
.+++++|++ .+||+ ||||.|+|
T Consensus 520 ~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 520 KAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp HHHHHHHHH----CCSSCEEEEEECCT
T ss_pred HHHHHHHHh----cCCCeEEEEEEccc
Confidence 999988874 57898 99999976
No 41
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.82 E-value=9.2e-22 Score=210.78 Aligned_cols=208 Identities=12% Similarity=0.009 Sum_probs=137.4
Q ss_pred CCccccccc-cccCcc---cceeecCCCccchhhcccC---CCccccccc-------------cCCCCCCCHHHHHHHHH
Q psy4881 94 DNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYT---LPTPNRSIT-------------YPTPSTMSDSQVDKAID 153 (423)
Q Consensus 94 dg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~---~~~~~r~~~-------------~~~~~~~~p~~vi~~l~ 153 (423)
..+|+++++ +++++. .++++|.+.+++.++.... ....|...| ......++|+++++.|+
T Consensus 336 ~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (604)
T 2x7j_A 336 QQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQ 415 (604)
T ss_dssp EEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHHHTSCCCCTTSHHHHHHHHH
T ss_pred eEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHH
Confidence 567998888 577765 3788899888877655431 223454211 11224689999999999
Q ss_pred hhccC-CeEEeCCCC-ccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHH
Q psy4881 154 KYVKE-NEYSQDSDE-NMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVF 231 (423)
Q Consensus 154 ~~~~~-~~~~~d~g~-~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~ 231 (423)
+.+++ +++++|.+. .+|.... ......+..++ ++.++++|+.++|+|+|++++ ++++|||++|||+++++ .
T Consensus 416 ~~lp~d~iv~~d~g~~~~~~~~~---~~~~~~~~~~~-~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~--~ 488 (604)
T 2x7j_A 416 HLVPENSSLFVGNSMPIRDVDTF---FEKQDRPFRIY-SNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHD--L 488 (604)
T ss_dssp HHSCTTCEEEECTTHHHHHHHHH---CCCBSCCCEEE-CCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHT--G
T ss_pred HhCCCCCEEEEECCHHHHHHHHh---cccCCCCceEE-eCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhH--H
Confidence 99975 567777543 3331111 11111123344 333333444444444444444 37899999999999986 3
Q ss_pred HHHHHhHhcCCCEEEEEecC-Cccccccccc---------cc---CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENN-GYGMGTSSER---------AS---ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAV 296 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN-~~gi~~~~~~---------~~---~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~ 296 (423)
++|++|+++++|+++||.|| +|+|.+..+. .. ..++|.+ ++||+++++|+ +.+++.+++++|+
T Consensus 489 ~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~ 566 (604)
T 2x7j_A 489 NGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA 566 (604)
T ss_dssp GGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC
T ss_pred HHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH
Confidence 55999999999988877766 5787553321 11 2457877 67899999998 6888877777665
Q ss_pred HHhhCCCCcEEEEEEEec
Q psy4881 297 NHCRSDKGPILLETATYR 314 (423)
Q Consensus 297 ~~ar~~~gP~lIev~t~R 314 (423)
+.+||+||||.|.|
T Consensus 567 ----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 567 ----DKPGLHLIEIKTDR 580 (604)
T ss_dssp ----SSCCEEEEEEECCH
T ss_pred ----hCCCCEEEEEECCc
Confidence 56899999999865
No 42
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.81 E-value=6.3e-21 Score=202.41 Aligned_cols=207 Identities=11% Similarity=0.019 Sum_probs=133.8
Q ss_pred cCCccccccc-cccCcc---cceeecCCCccchhhcccCCCccccccc-----------cCCCCCCCHHHHHHHHHhhcc
Q psy4881 93 CDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTLPTPNRSIT-----------YPTPSTMSDSQVDKAIDKYVK 157 (423)
Q Consensus 93 cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~~~~~r~~~-----------~~~~~~~~p~~vi~~l~~~~~ 157 (423)
...+|+++++ +++++. .+|++|++.+++.+... ....|...+ ......++|+++++.|++.++
T Consensus 304 ~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 381 (556)
T 3hww_A 304 EEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAE--KRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLP 381 (556)
T ss_dssp SEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSCCC--CCCCCCSSHHHHHHHHHHHHHTTCCSSSHHHHHHTGGGTCC
T ss_pred CeEEEECCCCccCCCCCCceEEEEcCHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHHhCC
Confidence 3567999998 577776 47888888877665332 223454321 123457999999999999997
Q ss_pred C-CeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHH
Q psy4881 158 E-NEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNI 236 (423)
Q Consensus 158 ~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~ 236 (423)
+ ++++++. ++++..+. .... ......++..+|++|.++. +++|+|++++ ++++|||++|||++++. .++|++
T Consensus 382 ~~~iv~~g~-~~~~~~~~-~~~~-~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~--~~eL~t 454 (556)
T 3hww_A 382 EQGQLFVGN-SLVVRLID-ALSQ-LPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYD--LNALAL 454 (556)
T ss_dssp TTCEEEECS-SHHHHHHH-HHCC-CCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHT--GGGHHH
T ss_pred CCCeEEEeC-CcHHHHHH-Hhcc-CCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhc--chhhHh
Confidence 6 4666543 22221111 0000 0011123434455555444 5555555544 58899999999999885 345999
Q ss_pred hHhcCCCEEEEEecCCc-ccccccc-------c---ccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC
Q psy4881 237 AKLWNIPCIFVCENNGY-GMGTSSE-------R---ASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK 303 (423)
Q Consensus 237 A~~~~LPvi~Vv~NN~~-gi~~~~~-------~---~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~ 303 (423)
|+++++|+++||+||++ +|....+ . ....+||.+ ++||+++++|+ +.+++.+++++|+ +.+
T Consensus 455 a~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~ 528 (556)
T 3hww_A 455 LRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW----RTP 528 (556)
T ss_dssp HTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT----TSS
T ss_pred hcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH----hCC
Confidence 99999999999998885 7654321 1 113577877 67899999998 6788888777765 578
Q ss_pred CcEEEEEEEec
Q psy4881 304 GPILLETATYR 314 (423)
Q Consensus 304 gP~lIev~t~R 314 (423)
||+||||.|.+
T Consensus 529 gp~liev~~~~ 539 (556)
T 3hww_A 529 TTTVIEMVVND 539 (556)
T ss_dssp SEEEEEEECCS
T ss_pred CCEEEEEECCc
Confidence 99999999865
No 43
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.79 E-value=1.6e-20 Score=200.22 Aligned_cols=208 Identities=12% Similarity=0.005 Sum_probs=127.0
Q ss_pred ccCCccccccc-cccCcc---cceeecCCCccchhhcccCC---Cccccccc--------------cCCCCCCCHHHHHH
Q psy4881 92 FCDNSHKYHNK-FHKDNV---GPLIIDGNTFPDYVLDKYTL---PTPNRSIT--------------YPTPSTMSDSQVDK 150 (423)
Q Consensus 92 ~cdg~H~~~~~-~~g~nv---gpl~~d~~~vl~~~l~~~~~---~~~~r~~~--------------~~~~~~~~p~~vi~ 150 (423)
.+..+|+++++ +++++. .+|++|++.+++.++..... ...|...| ......++|+++++
T Consensus 314 ~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (578)
T 3lq1_A 314 DIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVA 393 (578)
T ss_dssp SSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHH
T ss_pred CCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHH
Confidence 35567888888 467665 37888999888776553321 23343211 12235689999999
Q ss_pred HHHhhccC-CeEEeCCCCcc-cc-ccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccch
Q psy4881 151 AIDKYVKE-NEYSQDSDENM-TN-QLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQ 227 (423)
Q Consensus 151 ~l~~~~~~-~~~~~d~g~~~-~~-~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~ 227 (423)
.|++.+++ ++++++.+... |. .+... ...+..++...|++|. +.++|+|+|++ .++++|||++|||++++
T Consensus 394 ~l~~~l~~~~iv~~~~~~~~~~~~~~~~~----~~~~~~~~~~~G~~G~-~g~l~~AiGaa--~~~~~vv~i~GDGsf~~ 466 (578)
T 3lq1_A 394 ELRRLLPDKAGLFIGNSMPIRDVDTYFSQ----IDKKIKMLANRGANGI-DGVVSSALGAS--VVFQPMFLLIGDLSFYH 466 (578)
T ss_dssp HHHHHSCSEEEEEECSSHHHHHHHHHCCC----CSSEEEEECCCSSCCS-SSHHHHHHHHT--TTSSSEEEEEEHHHHHH
T ss_pred HHHHhCCCCCeEEEeCccHHHHHHHhhcc----cCCCceEEeCCCcccc-ccHHHHHHHHh--cCCCCEEEEEchHHHHh
Confidence 99999976 56777654322 21 12210 0011123323333332 11344444443 25889999999999988
Q ss_pred hhHHHHHHHhHhcCCCEEEEEecCC-ccccccc---c--cc----c---CCchhhh--hcCCCCeEEeeCCCHHHHHHHH
Q psy4881 228 GQVFEVYNIAKLWNIPCIFVCENNG-YGMGTSS---E--RA----S---ASVDYYT--RGDYIPGIWVDGMDILAVREAA 292 (423)
Q Consensus 228 G~~~EaLn~A~~~~LPvi~Vv~NN~-~gi~~~~---~--~~----~---~~~~~~~--~a~G~~~~~VdG~d~~~v~~al 292 (423)
. .++|++|+++++|+++||.||+ |+|.+.. + .. . ..+||.+ ++||+++++|+ +.+++.+++
T Consensus 467 ~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al 542 (578)
T 3lq1_A 467 D--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAI 542 (578)
T ss_dssp T--GGGGHHHHHTTCCEEEEEECCC-------------------------CCCTHHHHHHTTCEEEECC--SHHHHHHHH
T ss_pred h--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHH
Confidence 5 3569999999999999888886 6887632 1 11 1 2357776 68899999998 788988888
Q ss_pred HHHHHHhhCCCCcEEEEEEEec
Q psy4881 293 RFAVNHCRSDKGPILLETATYR 314 (423)
Q Consensus 293 ~~A~~~ar~~~gP~lIev~t~R 314 (423)
++|+ +.+||+||||.|.|
T Consensus 543 ~~a~----~~~gp~liev~~~~ 560 (578)
T 3lq1_A 543 DKAS----YHKGLDIIEVKTNR 560 (578)
T ss_dssp HHHT----TSSSEEEEEEC---
T ss_pred HHHH----hCCCCEEEEEECCc
Confidence 8776 57899999999876
No 44
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.79 E-value=3.1e-19 Score=197.57 Aligned_cols=149 Identities=17% Similarity=0.098 Sum_probs=118.8
Q ss_pred eeecCCCCC-CcHHHHHHHHHHHh-------cCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCC-EEEEEecCCccccc
Q psy4881 187 LVTVTNQLV-TVPLGVGIALAAKY-------SGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIP-CIFVCENNGYGMGT 257 (423)
Q Consensus 187 ~~~~sg~~g-~l~~A~GaA~a~k~-------~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~ 257 (423)
+..++|.+| +++.|+|+|++.++ .+++++|+|++|||++++|++||+||+|+.++|+ +||||+||+++++.
T Consensus 187 ~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~ 266 (886)
T 2qtc_A 187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDG 266 (886)
T ss_dssp CCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred ccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCC
Confidence 344566666 59999999999998 7889999999999999999999999999999997 99999999999988
Q ss_pred cccccc-CCchhhh--hcCCCCeEEe------------------------------------------------------
Q psy4881 258 SSERAS-ASVDYYT--RGDYIPGIWV------------------------------------------------------ 280 (423)
Q Consensus 258 ~~~~~~-~~~~~~~--~a~G~~~~~V------------------------------------------------------ 280 (423)
++.... ...++.+ +++|++.++|
T Consensus 267 ~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~ 346 (886)
T 2qtc_A 267 PVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAA 346 (886)
T ss_dssp BSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHT
T ss_pred CccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHH
Confidence 876421 2234444 5778888887
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCC--CCCCC----CcCChhHHHHHHh
Q psy4881 281 ---------------DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM--SDPGT----SYRTRDEIQEVRQ 338 (423)
Q Consensus 281 ---------------dG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~--~D~~~----~YR~~~e~~~~~~ 338 (423)
||||+.+|++|+++|.+. .++|+||+++|+|++||+. .++.. .|++.+|++.|++
T Consensus 347 l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 422 (886)
T 2qtc_A 347 LVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422 (886)
T ss_dssp TTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHH
T ss_pred HHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHH
Confidence 799999999999999863 3689999999999999973 23221 3888899888874
No 45
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.58 E-value=3.1e-16 Score=121.77 Aligned_cols=68 Identities=43% Similarity=0.797 Sum_probs=61.8
Q ss_pred CccccceeeccCCceeeeeEee-cCCcchhhhhhhcccCCCcccCCccccccccccCcccceeecCCCc
Q psy4881 51 PRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNTF 118 (423)
Q Consensus 51 ~~~~~n~~~~~~~~~~~~~~~~-d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d~~~v 118 (423)
.++++|+.|+|+.+++++.||+ |++.+++++||||+|.+||+|||+|..++.++|+|++||++..|++
T Consensus 15 k~~~vN~~I~k~~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k~~ 83 (83)
T 3fnv_A 15 KDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKKEV 83 (83)
T ss_dssp -CCCSCSSSCTTSSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECCC-
T ss_pred cccccCcceecCCCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEeccC
Confidence 3688999999999999999999 6555889999999999999999999999999999999999988763
No 46
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.56 E-value=3e-16 Score=121.45 Aligned_cols=63 Identities=40% Similarity=0.735 Sum_probs=57.8
Q ss_pred ccccceeeccCCceeeeeEee-cCCcchhhhhhhcccCCCcccCCccccccccccCcccceeec
Q psy4881 52 RRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIID 114 (423)
Q Consensus 52 ~~~~n~~~~~~~~~~~~~~~~-d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d 114 (423)
-+++|+.|+|+++++++.+|+ |++.++.++||||+|++||+|||+|.++|.++|+|++|+++.
T Consensus 18 g~~vN~~I~K~~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivk 81 (83)
T 3s2r_A 18 GGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLK 81 (83)
T ss_dssp --CCCSSTTTTSSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEE
T ss_pred cCccCchhhcCCCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEe
Confidence 378999999999999999999 666578899999999999999999999999999999999984
No 47
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.55 E-value=8.3e-16 Score=117.76 Aligned_cols=68 Identities=43% Similarity=0.821 Sum_probs=61.7
Q ss_pred CCccccceeeccCCceeeeeEee-cCCcchhhhhhhcccCCCcccCCccccccccccCcccceeecCCC
Q psy4881 50 EPRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNT 117 (423)
Q Consensus 50 ~~~~~~n~~~~~~~~~~~~~~~~-d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d~~~ 117 (423)
..++++|+.|+|+.+++++.||+ |++..++++||||+|.+||+|||+|..+|.++|+|++||++..++
T Consensus 8 ~~~~~vN~~i~kd~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~ 76 (77)
T 4ezf_A 8 RNKAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 76 (77)
T ss_dssp SCTTCSCSSSCTTSSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBC
T ss_pred CcccccccceecCCCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEecc
Confidence 45788999999999999999999 555338899999999999999999999999999999999997765
No 48
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.31 E-value=6e-12 Score=143.95 Aligned_cols=166 Identities=10% Similarity=-0.010 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHhhccC-CeEEeCC-CCcccc-ccccccccccc-cCC-eeeecCC--CCCCcHHHHHH------------
Q psy4881 143 MSDSQVDKAIDKYVKE-NEYSQDS-DENMTN-QLVTVTNQLVT-VTN-QLVTVTN--QLVTVPLGVGI------------ 203 (423)
Q Consensus 143 ~~p~~vi~~l~~~~~~-~~~~~d~-g~~~~~-~~~~~~~~~~~-~~~-~~~~~sg--~~g~l~~A~Ga------------ 203 (423)
..+..+++.|.+++++ .++++|. .+++|+ +++........ ... .|. +|. ..+.||+|+++
T Consensus 814 Cge~~~ik~l~ql~g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~-~Slf~~~a~mG~G~~~~~~~~~~~~~~~ 892 (1231)
T 2c42_A 814 CGETPYVRVITQLFGERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWG-NSLFEDAAEYGFGMNMSMFARRTHLADL 892 (1231)
T ss_dssp CSSHHHHHHHHHHHGGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEE-CCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhcCCCeEEEecCchHHHHHhhcccCCcccccCCCCccee-cccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999875 4677884 467773 33211111100 001 233 343 44679999999
Q ss_pred ---------------HH--------------------HHHhcCCC----------------CEEEEEeCCC-ccchhhHH
Q psy4881 204 ---------------AL--------------------AAKYSGTK----------------GVCFALYGDG-AANQGQVF 231 (423)
Q Consensus 204 ---------------A~--------------------a~k~~~~~----------------~~vv~~~GDG-a~~~G~~~ 231 (423)
|+ +++++.++ +.||++.||| ++.+|.
T Consensus 893 ~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~-- 970 (1231)
T 2c42_A 893 AAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGY-- 970 (1231)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTH--
T ss_pred HHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcch--
Confidence 88 77776433 7899999999 788873
Q ss_pred HHHHHhHhcCCCEEEEEecCCc-cccccccccc----------------CCchhhh--hcCCCCeEEee-C-CCHHHHHH
Q psy4881 232 EVYNIAKLWNIPCIFVCENNGY-GMGTSSERAS----------------ASVDYYT--RGDYIPGIWVD-G-MDILAVRE 290 (423)
Q Consensus 232 EaLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~----------------~~~~~~~--~a~G~~~~~Vd-G-~d~~~v~~ 290 (423)
.+|.+|.++++||++||.||+. |+...++... ..+||.+ +++|++++++. - .+++++.+
T Consensus 971 ~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~ 1050 (1231)
T 2c42_A 971 GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLK 1050 (1231)
T ss_dssp HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHH
Confidence 4599999999999999999985 8876432211 1257776 67899998542 2 38999999
Q ss_pred HHHHHHHHhhCCCCcEEEEEEEecC
Q psy4881 291 AARFAVNHCRSDKGPILLETATYRY 315 (423)
Q Consensus 291 al~~A~~~ar~~~gP~lIev~t~R~ 315 (423)
++++|++ .+||+|||+.+...
T Consensus 1051 al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1051 VLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp HHHHHHH----SSSCEEEEEECCCG
T ss_pred HHHHHHh----cCCCEEEEEeecCc
Confidence 9999985 68999999998643
No 49
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.24 E-value=1.2e-11 Score=135.49 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=103.3
Q ss_pred eeecCCCCCC-cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhh---HHHHHHHhHhcCCC-EEEEEecCCccccccccc
Q psy4881 187 LVTVTNQLVT-VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQ---VFEVYNIAKLWNIP-CIFVCENNGYGMGTSSER 261 (423)
Q Consensus 187 ~~~~sg~~g~-l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~---~~EaLn~A~~~~LP-vi~Vv~NN~~gi~~~~~~ 261 (423)
+..++|.||+ ++.|+|+| +.+++..|+|++|||..++|. .||+.+++..+++. ++.|+.+|++.|..++..
T Consensus 170 ve~~tG~LGqGls~AvG~A----~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l 245 (845)
T 3ahc_A 170 SIHEGGELGYALSHAYGAV----MNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTIL 245 (845)
T ss_dssp CSCCCSSTTCHHHHHHHHH----TTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHH
T ss_pred eecCCCCccchHhHHhhhh----hcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCCCCccc
Confidence 4556788886 88888888 458899999999999999999 99999999999998 888889999998877653
Q ss_pred c-cCCchhhh--hcCCCCeE-EeeC-C--CHHHHHHHHHHHHH-----------HhhC--CCCc--EEEEEEEecCC
Q psy4881 262 A-SASVDYYT--RGDYIPGI-WVDG-M--DILAVREAARFAVN-----------HCRS--DKGP--ILLETATYRYS 316 (423)
Q Consensus 262 ~-~~~~~~~~--~a~G~~~~-~VdG-~--d~~~v~~al~~A~~-----------~ar~--~~gP--~lIev~t~R~~ 316 (423)
. ....++.+ +|||+..+ .||| | |++++.+++.+|++ .+|+ .++| .+|-++|.+++
T Consensus 246 ~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 246 ARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp HHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred cccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 2 23345555 68999998 9999 9 99999988876663 3454 3689 99999999999
No 50
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.21 E-value=2.5e-12 Score=100.67 Aligned_cols=67 Identities=42% Similarity=0.848 Sum_probs=60.3
Q ss_pred CCccccceeeccCCceeeeeEeec-CCcchhhhhhhcccCCCcccCCccccccccccCcccceeecCCC
Q psy4881 50 EPRRLINKYYSKHHDVVTDRFTID-TGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNT 117 (423)
Q Consensus 50 ~~~~~~n~~~~~~~~~~~~~~~~d-~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d~~~ 117 (423)
..+..+|+.|.+..++++..|+++ .. +++++|+|++|.++|||||+|..++.++|+|++||++..+.
T Consensus 12 ~~~~~vni~I~k~gP~~V~~~~led~~-~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~~ 79 (80)
T 3ew0_A 12 RNKAMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 79 (80)
T ss_dssp CCCCCSCSSSCTTSSSEEEEECGGGCC-SEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECCC
T ss_pred CCCCccCeEEeCCCCEEEEeeccccCC-CeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEecc
Confidence 457779999999999999999885 44 78899999999999999999999999999999999997653
No 51
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=97.12 E-value=0.00018 Score=56.95 Aligned_cols=50 Identities=30% Similarity=0.540 Sum_probs=37.7
Q ss_pred eeeEeecCCcchhhhhhhcccCCCcccCCccccccccccCcccceeecCCCccchhh
Q psy4881 67 TDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVL 123 (423)
Q Consensus 67 ~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~~~~~~g~nvgpl~~d~~~vl~~~l 123 (423)
+..|.++.+ ..+++|+|++|++.|+|||+|. +....|+...+.+.-++.+
T Consensus 19 P~~v~le~g-~~~~~C~CG~S~~~PfCDGSH~------~~~f~P~~f~~e~~~~~~l 68 (87)
T 3tbn_A 19 PYPVTVEAG-KTYHWCACGRSKAQPFCDGSHK------GTGLAPVAYTPDKAGTAYF 68 (87)
T ss_dssp CEEEEECTT-CCEEECSSSCCSSTTBCCSTTT------TTTCCCEEECCSSCEEEEE
T ss_pred CEEEEeCCC-CEEEEeeCCCCCCCCCcCCccc------cCCccceEEEECCCcEEEE
Confidence 344555444 4679999999999999999998 5567888887776655544
No 52
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=96.67 E-value=0.00028 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.5
Q ss_pred hhhhhhhcccCCCcccCCccccccc
Q psy4881 78 TEAICRCWKSKKFPFCDNSHKYHNK 102 (423)
Q Consensus 78 ~~~~c~~~rs~~~p~cdg~H~~~~~ 102 (423)
++++|+|++|++.|||||+|.....
T Consensus 21 ~~~lC~CG~S~n~PFCDGSHk~~~f 45 (60)
T 3tbo_A 21 AIYLCRCGHSGSKPHCDGTHAKVGF 45 (60)
T ss_dssp CEEECCSSCCTTTTBCCSHHHHHTC
T ss_pred EEEEEECCCCCCCCccCCcCCCCcc
Confidence 4589999999999999999985543
No 53
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=96.61 E-value=0.00036 Score=53.15 Aligned_cols=26 Identities=42% Similarity=0.719 Sum_probs=22.2
Q ss_pred chhhhhhhcccCCCcccCCccccccc
Q psy4881 77 HTEAICRCWKSKKFPFCDNSHKYHNK 102 (423)
Q Consensus 77 ~~~~~c~~~rs~~~p~cdg~H~~~~~ 102 (423)
.++++|+|++|++.|||||+|.....
T Consensus 39 ~~~~lC~Cg~S~n~PfCDGsH~~~~f 64 (69)
T 3tbm_A 39 GQAWLCRCGHSLNKPFCDGSHKRVEF 64 (69)
T ss_dssp TEEEECCSSCCSSTTBCCSHHHHTTC
T ss_pred CEEEEeeCCCCCCCCccCCCcCCCCc
Confidence 34689999999999999999986544
No 54
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=96.37 E-value=0.00094 Score=52.89 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=31.9
Q ss_pred cCCceeeeeEeecCCcchhhhhhhcccCCCcccCCcccc
Q psy4881 61 KHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKY 99 (423)
Q Consensus 61 ~~~~~~~~~~~~d~~~~~~~~c~~~rs~~~p~cdg~H~~ 99 (423)
+++.+.+.+|.++.. .++++|+|.++.+.|+|||+|..
T Consensus 49 ~~~~f~P~~f~~e~~-~~~~lC~CK~T~n~PfCDGsH~~ 86 (87)
T 3tbn_A 49 KGTGLAPVAYTPDKA-GTAYFCGCKASKAPPLCDGTHKT 86 (87)
T ss_dssp TTTTCCCEEECCSSC-EEEEECSSSCCSSTTBCCSGGGT
T ss_pred ccCCccceEEEECCC-cEEEEecCCCCCCCCccCCcCCc
Confidence 345567888998766 67899999999999999999974
No 55
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=91.97 E-value=0.19 Score=50.59 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-cc--ccccccc-cCCchhhhh-cCC
Q psy4881 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-GM--GTSSERA-SASVDYYTR-GDY 274 (423)
Q Consensus 200 A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-gi--~~~~~~~-~~~~~~~~~-a~G 274 (423)
|+|+|+|+.+.+ .+.++...|.|-..+ .+.|..++..++|+++++-+-.. +. +...+.. .....|..- -+|
T Consensus 76 a~~~a~Gaa~aG-~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g 151 (395)
T 1yd7_A 76 SIAAAIGASWAG-AKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHS 151 (395)
T ss_dssp HHHHHHHHHHTT-CCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC--------------------------CCC
T ss_pred HHHHHHHHHHhC-CcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcc
Confidence 444444444445 457777888887554 45577778899998888876543 21 2211110 000011111 135
Q ss_pred CCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 275 IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 275 ~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
++.+... ++++....+..|++.+++.+.|+++....+
T Consensus 152 ~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~~~ 188 (395)
T 1yd7_A 152 LIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTDAE 188 (395)
T ss_dssp CEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEECHH
T ss_pred eEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcchh
Confidence 5555554 899999999999988877789999987654
No 56
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=91.51 E-value=0.54 Score=49.25 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhccCCeEEeCCCCccccccccccccccccCCeeeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCc
Q psy4881 145 DSQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGA 224 (423)
Q Consensus 145 p~~vi~~l~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa 224 (423)
.+.+++.|.+.-=+.+|..=|+..+. +.. ...+..-.++.+.+-.+..-+|.|.|.+ .++-..+++..|=|+
T Consensus 14 a~~l~~~L~~~GV~~vfg~PG~~~~~--l~~---al~~~~i~~v~~~~E~~Aa~~A~Gyar~---tg~p~v~~~TsGpG~ 85 (566)
T 1ozh_A 14 ADLVVSQLEAQGVRQVFGIPGAKIDK--VFD---SLLDSSIRIIPVRHEANAAFMAAAVGRI---TGKAGVALVTSGPGC 85 (566)
T ss_dssp HHHHHHHHHHHTCCEEEEECCTTTHH--HHH---HGGGSSSEEEECSSHHHHHHHHHHHHHH---HSSCEEEEECSTHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCchHH--HHH---HHHhCCCcEEEeCCHHHHHHHHHHHHHH---HCCCEEEEEccChHH
Confidence 34566666665434455443444332 111 0010001233333433445556666654 244444555557777
Q ss_pred cchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC
Q psy4881 225 ANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD 302 (423)
Q Consensus 225 ~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~ 302 (423)
++. .-++..|..-++|+|+|.-+-..........+ ..|... +.+-....++. +++++...+++|+..++.+
T Consensus 86 ~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~ 158 (566)
T 1ozh_A 86 SNL---ITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTKYAIEVT--APDALAEVVSNAFRAAEQG 158 (566)
T ss_dssp HTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSEEEECC--SGGGHHHHHHHHHHHHHSS
T ss_pred HHH---HHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhheEEEcC--CHHHHHHHHHHHHHHHhcC
Confidence 665 35588888899999999876554211110001 122222 11222345665 7888999999999888887
Q ss_pred C-CcEEEEEEEe
Q psy4881 303 K-GPILLETATY 313 (423)
Q Consensus 303 ~-gP~lIev~t~ 313 (423)
+ ||+.|++...
T Consensus 159 r~GPV~l~iP~d 170 (566)
T 1ozh_A 159 RPGSAFVSLPQD 170 (566)
T ss_dssp SCCEEEEEEEHH
T ss_pred CCCeEEEEeChh
Confidence 4 9999998765
No 57
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.38 E-value=1.2 Score=46.80 Aligned_cols=110 Identities=16% Similarity=0.069 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-hcC
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT-RGD 273 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~-~a~ 273 (423)
+..-+|.|.|.+ .+.-..+++..|=|+++. .-++..|...++|||+|.-+-......... .....|... +.+
T Consensus 54 ~Aa~~A~GyAr~---tg~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~~Q~~d~~~~~~~ 126 (589)
T 2pgn_A 54 GGAWMVNGYNYV---KDRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSE-AAQQVPWQSFTPI 126 (589)
T ss_dssp HHHHHHHHHHHH---HTSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTT-CSSCCCGGGGTTT
T ss_pred HHHHHHHHHHHH---HCCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCC-cccccChhhcccc
Confidence 344556666554 355667888889998876 345888999999999998776542211110 011112222 111
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
--...++. +++++...+.+|+..++.++ ||+.|++...
T Consensus 127 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 127 ARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp SSEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EEEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 12235665 78889999999998888776 9999998754
No 58
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=91.20 E-value=2.8 Score=44.94 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++.++.+-+. ..++.+..++..++||+++....++|.+ .+++ .+..+.+- +.
T Consensus 415 ~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 485 (663)
T 3kom_A 415 MAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRL 485 (663)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhc
Confidence 37777777764 456778887766542 2356788889999999999887776532 2221 11122221 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
. |+..+.= .|+.++..+++.|++ ..++|++|-
T Consensus 486 iPnl~V~~P--ad~~e~~~~l~~A~~---~~~~Pv~ir 518 (663)
T 3kom_A 486 IPNLSVWRP--ADTIETMIAWKEAVK---SKDTPSVMV 518 (663)
T ss_dssp STTCEEECC--CSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred CCCcEEEee--CCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 2 4433322 378899998888884 358999983
No 59
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=90.64 E-value=0.8 Score=48.17 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=68.9
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh-
Q psy4881 192 NQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT- 270 (423)
Q Consensus 192 g~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~- 270 (423)
+=.+..-+|.|.|.+. ++-.++++..|=|+++. .-++..|...++|||+|.-+-......... ....|...
T Consensus 58 ~E~~Aa~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~~~--~Q~~d~~~~ 129 (590)
T 1ybh_A 58 HEQGGVFAAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEV 129 (590)
T ss_dssp SHHHHHHHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHH---CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCCCc--ccccCHHHH
Confidence 3334455666666552 44455566666666664 456888999999999998765432111100 00112222
Q ss_pred -hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 271 -RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 271 -~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
+.+--...++. +++++..++++|+..++.++ ||+.|++...
T Consensus 130 ~~~~~k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 130 TRSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HGGGSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHhCeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 11222245665 78899999999999888764 8999998754
No 60
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=90.37 E-value=1.1 Score=46.69 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=70.9
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccc-ccc--ccccc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGM-GTS--SERAS 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi-~~~--~~~~~ 263 (423)
++.+.+=.+..-+|.|.|.+ .+ ...+++..|=|+++. .-++..|...++|+|+|.-+-.... .+. .....
T Consensus 44 ~i~~~~E~~Aa~~A~Gyar~---tg-~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~ 116 (568)
T 2wvg_A 44 QVYCCNELNCGFSAEGYARA---KG-AAAAVVTYSVGALSA---FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHAL 116 (568)
T ss_dssp EEECSSHHHHHHHHHHHHHH---HS-CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSC
T ss_pred EeccCcHHHHHHHHHHHHHh---hC-CeEEEEeCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeec
Confidence 33333434445566666654 34 455666667777664 4568888999999999998765422 110 00000
Q ss_pred --CC-chhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 --AS-VDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 --~~-~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.. .+... +.+-....++. +++++...+.+|+..+..+.||+.|++...
T Consensus 117 g~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 117 GKTDYHYQLEMAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp SSSCCCHHHHHHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred cccchHHHHHHHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 00 12222 12223356776 677888888888887777789999999764
No 61
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=90.20 E-value=1 Score=47.00 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=70.4
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+.+=.+..-+|.|.|.+. ++-..+++..|=|++|. .-++..|...++|+|+|.-+-..........+. ..|
T Consensus 45 i~~~~E~~Aa~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~-~~d 117 (563)
T 2uz1_A 45 IDTRHEAAAGHAAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNTLQA-GID 117 (563)
T ss_dssp EECSSHHHHHHHHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTC-CCC
T ss_pred EeeCCHHHHHHHHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhh-hcc
Confidence 33334344455666666552 33444555556666664 345788889999999998776542211110111 022
Q ss_pred hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe
Q psy4881 268 YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 313 (423)
Q Consensus 268 ~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~ 313 (423)
... +.+-....++. +++++...+.+|+..++.++ ||+.|++...
T Consensus 118 ~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 118 QVAMAAPITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHGGGCSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHhhhhhceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 222 12222345665 78889999999998888865 9999998765
No 62
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=89.68 E-value=1 Score=47.21 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=70.9
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+.+=.+..-+|.|.|... +.-..+++..|=|+++. .-++..|...++|+|+|.-+-........ ......|
T Consensus 52 i~~~~E~~Aa~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d 124 (573)
T 2iht_A 52 VLTRHEFTAGVAADVLARIT---GRPQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLD 124 (573)
T ss_dssp EECSSHHHHHHHHHHHHHHH---CSCEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCC
T ss_pred EeeCCHHHHHHHHHHHHHHH---CCCEEEEEccCchHHHH---HHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCC
Confidence 33333334455666666552 33344555556666654 45688888999999999887654221110 0011122
Q ss_pred hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEec
Q psy4881 268 YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATYR 314 (423)
Q Consensus 268 ~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~R 314 (423)
... +.+--...++. +++++...+++|+..++.++ ||+.|++...-
T Consensus 125 ~~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 125 SVAIVAPMSKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp HHHHHGGGSSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred HHHHHHhHhhEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 222 11122345665 78889999999998888775 99999997653
No 63
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=89.38 E-value=1.1 Score=46.80 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=68.2
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-ccccc--cccc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSS--ERAS 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~--~~~~ 263 (423)
++.+.+=.+..-+|.|.|.+ .+ -..+++..|=|+++. .-++..|...++|+|+|+-+-... +.... ....
T Consensus 44 ~v~~~~E~~Aa~~A~Gyar~---tg-~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~ 116 (566)
T 2vbi_A 44 QIYCCNELNCGFSAEGYARS---NG-AAAAVVTFSVGAISA---MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTI 116 (566)
T ss_dssp EEECSSHHHHHHHHHHHHHH---HS-CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSC
T ss_pred EEeeCcHHHHHHHHHHHHhh---cC-CeEEEEeCCCCHHHH---HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeec
Confidence 33334434445566666654 24 444555557777664 455788889999999999875542 11110 0000
Q ss_pred ---CCchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 ---ASVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 ---~~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
...+... +.+-....++. +++++.+.+.+|+..++.++||+.|++...
T Consensus 117 g~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 117 GKTDYSYQLEMARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp SSSCCTHHHHHHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred cCcchHHHHHHHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 0012222 12223345665 566677777777777777779999999754
No 64
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=89.24 E-value=1.2 Score=47.91 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh
Q psy4881 191 TNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT 270 (423)
Q Consensus 191 sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~ 270 (423)
.+=.+..-+|.|.|.+ .+.-.++++..|=|++|. .-++..|-.-++|||+|+-+-.........-+ ..|...
T Consensus 127 ~hE~~Aa~aAdGyAr~---tGkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q--~~Dq~~ 198 (677)
T 1t9b_A 127 KHEQGAGHMAEGYARA---SGKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQ--EADVVG 198 (677)
T ss_dssp SSHHHHHHHHHHHHHH---HSSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTT--CCCHHH
T ss_pred CChHHHHHHHHHHHHH---HCCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCCCcc--ccCHHH
Confidence 3333445566666654 244455666667776665 34588888899999999876543211110000 112111
Q ss_pred --hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEE
Q psy4881 271 --RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETAT 312 (423)
Q Consensus 271 --~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t 312 (423)
+.+--...+|. +++++...+.+|+..++.+ .||++|++..
T Consensus 199 i~~~~tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 199 ISRSCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HTGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 11112335665 7889999999999888876 5999999974
No 65
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=89.18 E-value=2 Score=45.75 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=61.7
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhhhcC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYTRGD 273 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~~a~ 273 (423)
.+++|.|+|++ +..+++++.++++..- .++.+.+++..++|+++++.+-+++.+ .+.+ .+..+.+- -.
T Consensus 367 ~v~~a~G~A~~----G~~~~~~~~f~~Fl~~---a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~-l~ 436 (616)
T 3mos_A 367 MVSIAVGCATR----NRTVPFCSTFAAFFTR---AFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAM-FR 436 (616)
T ss_dssp HHHHHHHHHGG----GCCEEEEEEEGGGGGG---GHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHH-HH
T ss_pred HHHHHHHHHHc----CCCCEEEEehHHHHHH---HHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHH-hc
Confidence 36777777765 4335677889998742 367788888999999988776555332 1111 11122211 11
Q ss_pred CCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 274 YIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 274 G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
.+|++.| .=.|+.++..+++.|+ +.++|++|-
T Consensus 437 ~iP~l~V~~P~d~~e~~~~l~~a~----~~~gp~~ir 469 (616)
T 3mos_A 437 SVPTSTVFYPSDGVATEKAVELAA----NTKGICFIR 469 (616)
T ss_dssp TSTTEEEECCCSHHHHHHHHHHHH----TCCSEEEEE
T ss_pred CCCCCEEEecCCHHHHHHHHHHHH----hcCCCEEEE
Confidence 3555433 2237888888888777 457998763
No 66
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=88.80 E-value=2.2 Score=45.85 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hcC
Q psy4881 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RGD 273 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a~ 273 (423)
+++|.|+|+. +.-+++++.+...+.- .++++..++..++|+++++.+.+++.+ .++. .+..+.+- ++.
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~~---~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVEY---ARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGGT---THHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHHH---HHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 6666666654 4456777777665532 256688899999999999888776532 1221 11222222 222
Q ss_pred -CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 274 -YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 274 -G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
|+..+.= .|..++..+++.|++ ..++|++|-
T Consensus 486 P~l~V~~P--ad~~E~~~~l~~a~~---~~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRP--CDQVESAVAWKYGVE---RQDGPTALI 517 (669)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHH---CSSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHH---hCCCcEEEE
Confidence 4433322 378899999999885 237999984
No 67
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=88.64 E-value=1.1 Score=46.53 Aligned_cols=117 Identities=10% Similarity=-0.008 Sum_probs=69.6
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+=.+..-+|.|.|... +.-.++++..|=|+++. .-++..|..-++|||+|.-+-........ .....
T Consensus 44 ~i~~~~E~~Aa~~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~~--~~Q~~ 115 (549)
T 3eya_A 44 WMSTRHEEVAAFAAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG--YFQET 115 (549)
T ss_dssp EEECSSHHHHHHHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTSC--CTTCC
T ss_pred EEEeCChHHHHHHHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCCC--CCCcc
Confidence 333334334455566666542 44455566667777765 35688899999999999865432110000 00011
Q ss_pred hhhhh--cCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 267 DYYTR--GDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 267 ~~~~~--a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
+.... .+--...++. +++++.+.+.+|+..+....||+.|++...
T Consensus 116 d~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 116 HPQELFRECSHYCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp CHHHHTSTTCSEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred CHHHHHhhhhheEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 22221 1112235665 778888888888888877889999998653
No 68
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=88.58 E-value=1.1 Score=47.08 Aligned_cols=114 Identities=14% Similarity=0.028 Sum_probs=66.9
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+.+=.+..-+|.|.|.+ .++-.++++..|=|+++. .-++..|...++|+|+|.-+-..........+ ..|
T Consensus 47 i~~~~E~~Aa~~A~GyAr~---tgk~~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d 118 (590)
T 1v5e_A 47 LQVKHEEVGAMAAVMQSKF---GGNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELN 118 (590)
T ss_dssp EECSSHHHHHHHHHHHHHT---TCCCCEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCC
T ss_pred EeeCCHHHHHHHHHHHHHH---HCCCEEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccC
Confidence 3333333445555565543 344445555567666664 34578888899999999887654221111001 112
Q ss_pred hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEE
Q psy4881 268 YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETAT 312 (423)
Q Consensus 268 ~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t 312 (423)
... +.+--..+.+. +++++.+.+++|++.++.++ ||++| +..
T Consensus 119 ~~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~ 163 (590)
T 1v5e_A 119 QNPMYDHIAVYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VPG 163 (590)
T ss_dssp CHHHHHTTCSEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EET
T ss_pred HHHHHHhhccEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ecc
Confidence 211 11222245665 78888899999998888777 99999 654
No 69
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=88.17 E-value=2.4 Score=45.41 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++..+.=.+. -.++++..++..++|+++++.+.+++.+ .++. ....+++- ++
T Consensus 409 ~~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~ 479 (651)
T 2e6k_A 409 MGAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRA 479 (651)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcC
Confidence 36777777765 435677776643332 2356688899999999999888887543 1221 11223222 33
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
. |+..+.- .|..++..+++.|++ ..++|++|-.
T Consensus 480 iP~l~V~~P--ad~~E~~~~l~~A~~---~~~~Pv~i~~ 513 (651)
T 2e6k_A 480 MPNLFVIRP--ADAYETFYAWLVALR---RKEGPTALVL 513 (651)
T ss_dssp STTCEEECC--SSHHHHHHHHHHHHH---CCSSCEEEEC
T ss_pred CCCcEEEec--CCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 2 4443333 378999999999885 2368998854
No 70
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=87.63 E-value=1.2 Score=47.00 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-cccc-cccccC
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTS-SERASA 264 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~-~~~~~~ 264 (423)
++.+.+=.+..-+|.|.|.. .+.-.++++..|=|++|. .-++..|...++|||+|.-+-... +... .|.. .
T Consensus 53 ~i~~~hE~~Aa~aA~GyAr~---tg~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~-d 125 (603)
T 4feg_A 53 YIQVRHEEVGAMAAAADAKL---TGKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEM-N 125 (603)
T ss_dssp EEECSSHHHHHHHHHHHHHH---HSSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCC-C
T ss_pred EEEecChHHHHHHHHHHHHH---hCCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCccccc-c
Confidence 33333333445556666654 344445556667777765 355888999999999998654321 1110 0100 0
Q ss_pred CchhhhhcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 265 SVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 265 ~~~~~~~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
...+. +.+-....++. +++++.+.+.+|+..+....||+.|++..
T Consensus 126 ~~~~~-~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 170 (603)
T 4feg_A 126 ENPIY-ADVADYNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 170 (603)
T ss_dssp CGGGG-TTTCSEEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred HHHHh-hhhceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 01111 11112234555 56677777777777766668999999864
No 71
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=87.18 E-value=2.2 Score=45.03 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=67.0
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhh
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYY 269 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~ 269 (423)
+.+=.+..-+|.|.|.+. .++-.++++..|=|+++. .-++..|..-++|+|+|.-+-.........-+ ..|..
T Consensus 71 ~~~E~~Aa~~A~GyAr~t--gg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~ 143 (616)
T 2pan_A 71 ARHVEGASHMAEGYTRAT--AGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIE 143 (616)
T ss_dssp CSSHHHHHHHHHHHHHHS--TTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHH
T ss_pred eCCHHHHHHHHHHHHHhc--CCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHH
Confidence 333333455566666541 023334445566666664 34588888899999999877554221111001 12222
Q ss_pred h--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 270 T--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 270 ~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
. +.+--..+++. +++++...+++|+..++.+ .||+.|++...
T Consensus 144 ~~~~~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 144 AIAKPVSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHhhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 2 11122335665 6788999999999888776 49999998653
No 72
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=87.16 E-value=1.1 Score=46.83 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.1
Q ss_pred eecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCch
Q psy4881 188 VTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVD 267 (423)
Q Consensus 188 ~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~ 267 (423)
+.+.+=.+..-+|.|.|.. .+.-..+++..|=|+++. .-++..|...++|+|+|.-+-...............|
T Consensus 51 i~~~~E~~Aa~~A~GyAr~---tg~pgv~~~TsGpG~~N~---~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~d 124 (568)
T 2c31_A 51 YSFRHEQHAGYAASIAGYI---EGKPGVCLTVSAPGFLNG---VTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMD 124 (568)
T ss_dssp EECSSHHHHHHHHHHHHHH---HSSCEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCC
T ss_pred EEeCcHHHHHHHHHHHHHH---hCCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccC
Confidence 3333333445556666654 244445555556666654 4568889999999999987655321110000000112
Q ss_pred hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhC-CCCcEEEEEEEe
Q psy4881 268 YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRS-DKGPILLETATY 313 (423)
Q Consensus 268 ~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~-~~gP~lIev~t~ 313 (423)
... +.+--...++. +++++...+.+|+..+.. ..||+.|++...
T Consensus 125 q~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 125 QMNVARPHCKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHSGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHhhhheeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 211 11112235665 777888889999988877 459999998643
No 73
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=87.13 E-value=2.9 Score=44.92 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHhcC-CCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 197 VPLGVGIALAAKYSG-TKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 197 l~~A~GaA~a~k~~~-~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
+++|.|+|+. + .-++++.++...+. -.++++..++..++|++++....+++.. .++. + +..+.+- +
T Consensus 427 v~~a~GlA~~----G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~edla~lr- 496 (675)
T 1itz_A 427 GAICNGIALH----SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH-Q-PIEHLVSFR- 496 (675)
T ss_dssp HHHHHHHHTT----CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHHHHHH-
T ss_pred HHHHHHHHhc----CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc-C-cHHHHHHhc-
Confidence 5566666543 5 35677777766553 2467788899999999999987776532 1211 1 1222222 2
Q ss_pred CCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 DYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
.+|+..| .=.|..++..+++.|++ ..++|++|-.
T Consensus 497 -~iP~l~V~~Pad~~e~~~~l~~a~~---~~~~Pv~i~~ 531 (675)
T 1itz_A 497 -AMPNILMLRPADGNETAGAYKVAVL---NRKRPSILAL 531 (675)
T ss_dssp -SSSSCEEECCCSHHHHHHHHHHHHH---CTTSCEEEEE
T ss_pred -cCCCeEEEECCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence 2444322 22378899999998885 2379999843
No 74
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=86.75 E-value=1.2 Score=46.46 Aligned_cols=119 Identities=12% Similarity=0.142 Sum_probs=68.4
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+=.+..-+|.|.|.+. +.-.++++..|=|+++. .-++..|...++|||+|.-+-...............
T Consensus 48 ~i~~~hE~~Aa~~A~Gyar~t---g~pgv~~~TsGpG~~N~---~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~ 121 (564)
T 2q28_A 48 YIGFRHEQSAGYAAAASGFLT---QKPGICLTVSAPGFLNG---LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEEL 121 (564)
T ss_dssp EEECSSHHHHHHHHHHHHHHH---SSCEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCC
T ss_pred EEeeCCHHHHHHHHHHHHHHh---CCCEEEEEccCchHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccc
Confidence 333333334455566666542 33345555556666654 456888889999999998765532111000000011
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +.+--...++. +++++...+.+|+..++.+ .||+.|++...
T Consensus 122 dq~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 122 DQMNAAKPYAKAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp CHHHHHGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cHHHHHHHhhheeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 2111 11222345665 6778888899999888874 59999998654
No 75
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=86.58 E-value=2.2 Score=45.58 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++.++..-+ . ..++.+..++..++||+++....++|.+ .+++ .+..+.+- ++
T Consensus 394 ~v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 464 (632)
T 3l84_A 394 MAAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRA 464 (632)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHH
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhc
Confidence 36777777765 44577887765543 3 2457788889999999999887776532 2221 12222222 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
. |+..++= .|+.++..+++.|++ .++|++|-.
T Consensus 465 iP~l~V~~P--~d~~e~~~~l~~A~~----~~~Pv~ir~ 497 (632)
T 3l84_A 465 MPNFLTFRP--ADGVENVKAWQIALN----ADIPSAFVL 497 (632)
T ss_dssp SSSCEEECC--SSHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred CCCCEEEec--CCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 2 4433322 378899999998885 579998843
No 76
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=86.20 E-value=2.7 Score=45.15 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHhcCCCC-EEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 197 VPLGVGIALAAKYSGTKG-VCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 197 l~~A~GaA~a~k~~~~~~-~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
+++|.|+|+. +.-+ +++..+..-+. -.++++..++..++||++++...+++.. .+++ + +..+.+- +
T Consensus 422 vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH-q-~~edla~lr- 491 (680)
T 1gpu_A 422 GAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH-Q-PIETLAHFR- 491 (680)
T ss_dssp HHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHHHHHH-
T ss_pred HHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc-C-CHHHHHHhc-
Confidence 6677777765 4346 67766644332 2356688899999999999877776532 2222 1 1122221 2
Q ss_pred CCCCeEEe-eCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 273 DYIPGIWV-DGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 273 ~G~~~~~V-dG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
.+|+..| .=.|+.++..+++.|++ ..++|++|-
T Consensus 492 -~iP~l~V~~Pad~~e~~~~l~~A~~---~~~~Pv~i~ 525 (680)
T 1gpu_A 492 -SLPNIQVWRPADGNEVSAAYKNSLE---SKHTPSIIA 525 (680)
T ss_dssp -TSSSCEEECCCSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred -CCCCCEEEecCCHHHHHHHHHHHHH---hCCCcEEEE
Confidence 3444322 12378899999998885 237999984
No 77
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=86.11 E-value=1.7 Score=45.50 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=65.0
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcc-ccccc--ccccCCc
Q psy4881 190 VTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYG-MGTSS--ERASASV 266 (423)
Q Consensus 190 ~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~g-i~~~~--~~~~~~~ 266 (423)
+.+-.+..-+|.|.|.+. ++-.++++..|=|+++. .-++..|...++|+|+|.-+-... +.+.. ..+....
T Consensus 65 ~~~E~~Aa~~A~GyAr~t---gkp~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~ 138 (565)
T 2nxw_A 65 LSHEPAVGFAADAAARYS---STLGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 138 (565)
T ss_dssp CSSHHHHHHHHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------
T ss_pred cCcHHHHHHHHHHHHHHh---CCCeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccch
Confidence 333333455566666553 33444555556666664 455888889999999998774431 11100 0000011
Q ss_pred h-hhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 267 D-YYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 267 ~-~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
+ ... +.+-....++. +++++...+.+|+..++...||+.|++...
T Consensus 139 d~q~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 139 DTQFQVFKEITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp CHHHHHHTTSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hhHHHHHHhhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 1 111 11223345665 666777777777777766679999999854
No 78
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=84.94 E-value=3.9 Score=43.36 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH-HHHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE-VYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E-aLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|++ + -++++.+++++.. ..+| -++.++..++|+++++.+-++ |-..+++. ...++.- ++
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~--~~~d~~~~~~ 442 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQ--GAFDLSYLRC 442 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGC--BCSHHHHTTT
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccC--chHHHHHHhc
Confidence 47777777774 3 5788888988753 2243 367788999999999866554 21111111 1123222 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
. |+..+.-. |+.++...++.|++ ..++|++|-.
T Consensus 443 iP~l~v~~P~--d~~e~~~~l~~a~~---~~~~Pv~i~~ 476 (621)
T 2o1s_A 443 IPEMVIMTPS--DENECRQMLYTGYH---YNDGPSAVRY 476 (621)
T ss_dssp STTCEEECCS--SHHHHHHHHHHHHH---CCSSCEEEEC
T ss_pred CCCCEEEecC--CHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 2 55444333 89999999999885 2378998854
No 79
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=84.67 E-value=2.5 Score=41.47 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHHHHHhH---------hcCCCEEEEEecCCc-ccccccccccC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEVYNIAK---------LWNIPCIFVCENNGY-GMGTSSERASA 264 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~EaLn~A~---------~~~LPvi~Vv~NN~~-gi~~~~~~~~~ 264 (423)
.+++|.|+|++ + -++++.+ +++... ..++.+...+ +.++|+++++.+ ++ |-..+.. +.
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tH--s~ 142 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQH--SQ 142 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGG--CC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcch--hh
Confidence 47777777765 3 4556654 888772 2356565444 389999999885 54 2111111 11
Q ss_pred Cch-hhhhcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 265 SVD-YYTRGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 265 ~~~-~~~~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
..+ +. +.. |+..+.-. |+.+....++.|++ .++|++|-.
T Consensus 143 ~~ea~l-~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~~ 183 (341)
T 2ozl_B 143 CFAAWY-GHCPGLKVVSPW--NSEDAKGLIKSAIR----DNNPVVVLE 183 (341)
T ss_dssp CCHHHH-HTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred HHHHHh-ccCCCCEEEEeC--CHHHHHHHHHHHHh----cCCCEEEEE
Confidence 112 11 222 45444333 89999999998885 479998754
No 80
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=84.64 E-value=2.5 Score=44.56 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=66.8
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+=.+..-+|.|.|.+. ++-.++++..|=|+++. .-++..|-.-++|||+|.-+-..........+ ..
T Consensus 72 ~i~~~hE~~Aa~aA~GyAr~t---gkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~ 143 (604)
T 2x7j_A 72 VHVQIDERSAGFFALGLAKAK---QRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AI 143 (604)
T ss_dssp EEECSSHHHHHHHHHHHHHHH---TSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CC
T ss_pred EEEecChHHHHHHHHHHHHhh---CCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cC
Confidence 333344344455666666542 44445566667777665 34588888999999999876543211100000 01
Q ss_pred hhhh--hcCCCCeEEeeCCCHHH-------HHHHHHHHHHHhhCC-CCcEEEEEEEe
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILA-------VREAARFAVNHCRSD-KGPILLETATY 313 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~-------v~~al~~A~~~ar~~-~gP~lIev~t~ 313 (423)
|... +.+--....|. ++++ +...+++|+..++.+ .||+.|++...
T Consensus 144 d~~~~~~~~tk~~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 144 NQHFLFGNFVKFFTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp CCTTTTGGGSSCEEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred cHHHHhhhheeeeeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 1111 11112235554 3333 777888888877774 69999999865
No 81
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=84.49 E-value=4.9 Score=43.10 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++.++..-+. -.++++..++..++|+++++...+++.. .+++ + +..+.+- ++
T Consensus 414 ~~~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH-q-~~edla~lr~ 484 (673)
T 1r9j_A 414 MCAILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH-Q-PVELVAALRA 484 (673)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHHHHHHH
T ss_pred HHHHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc-C-CHHHHHHHcC
Confidence 36677776654 445677777655443 2256688899999999999877776533 1221 1 1122222 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
. |+..++= .|..++..+++.|++ ..++|++|-
T Consensus 485 iP~l~V~~P--ad~~e~~~~l~~a~~---~~~~Pv~i~ 517 (673)
T 1r9j_A 485 MPNLQVIRP--SDQTETSGAWAVALS---SIHTPTVLC 517 (673)
T ss_dssp STTCEEECC--SSHHHHHHHHHHHHH---CTTCCEEEE
T ss_pred CCCCEEEeC--CCHHHHHHHHHHHHH---hCCCeEEEE
Confidence 2 4433322 378899999998885 237899984
No 82
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=82.58 E-value=6.8 Score=42.18 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++..+.--+.- ..-++..++..++||++++...+++.+ .+++ .+..+.+- ++
T Consensus 439 mv~~A~GlA~~----gG~~P~~~tf~~Fs~f---~~~air~~al~~lpVv~v~~~~gigvG~dG~TH--q~ied~a~lr~ 509 (690)
T 3m49_A 439 MGAAMNGIALH----GGLKTYGGTFFVFSDY---LRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTH--EPIEQLAALRA 509 (690)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGGGG---GHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHHHH---HHHHHHHHHhcCCCcEEEEECCCcCCCCCCCcc--CCHHHHHHHhc
Confidence 37777777775 3456677655332311 123467788999999999987776432 2222 11222222 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
. |+..++= .|..++..+++.|++ ..++|++|-
T Consensus 510 iPnl~V~~P--ad~~E~~~~l~~Ai~---~~~~Pv~ir 542 (690)
T 3m49_A 510 MPNVSVIRP--ADGNESVAAWRLALE---STNKPTALV 542 (690)
T ss_dssp STTCEEECC--SSHHHHHHHHHHHHH---CSSSCEEEE
T ss_pred CCCCEEEee--CCHHHHHHHHHHHHH---cCCCCEEEE
Confidence 2 4433322 378899999998885 347899983
No 83
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=81.76 E-value=3 Score=42.99 Aligned_cols=119 Identities=16% Similarity=0.060 Sum_probs=69.0
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASV 266 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~ 266 (423)
++.+.+=.+..-+|.|.|.+. +...+|++..|=|.++. .-++..|...++|+|+|.-+-..........+. ..
T Consensus 41 ~i~~~~E~~Aa~~A~Gyar~t---g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~ 113 (528)
T 1q6z_A 41 YILALQEACVVGIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NV 113 (528)
T ss_dssp EEECSSHHHHHHHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CT
T ss_pred EEEECcHHHHHHHHHHHHHHh---CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cc
Confidence 333444344455666766553 44445556667777654 345788889999999998765431110000010 01
Q ss_pred hhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCC-CcEEEEEEEec
Q psy4881 267 DYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDK-GPILLETATYR 314 (423)
Q Consensus 267 ~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~-gP~lIev~t~R 314 (423)
|... +.+--...++. +++++...+.+|+..++.++ ||+.|++...-
T Consensus 114 d~~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 114 DAANLPRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp TGGGSSTTSCSCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred cHHHHHHHhhHhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 2222 11111234554 67778888888888877754 79999997653
No 84
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=80.57 E-value=3.4 Score=40.29 Aligned_cols=98 Identities=9% Similarity=0.058 Sum_probs=57.3
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHHHH-HhHh--------cCCCEEEEEecCCcccccccccccCC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEVYN-IAKL--------WNIPCIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~EaLn-~A~~--------~~LPvi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
.+++|.|+|++ + -++++++ ++++.. ..++.+. .++. +++|+++++.+-+ +...+.+ ++.
T Consensus 64 ~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th--~s~ 132 (338)
T 1qs0_B 64 IVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQT--HSQ 132 (338)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSS--SSC
T ss_pred HHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCccc--ccc
Confidence 47788888876 3 3455544 888862 2356554 3443 3599999886543 2211111 111
Q ss_pred chhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 266 VDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 266 ~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
.+..- ++. |+..+.-. |+.+....++.|++ .++|++|-.
T Consensus 133 ~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~----~~~Pv~i~~ 173 (338)
T 1qs0_B 133 SPEAMFTQVCGLRTVMPS--NPYDAKGLLIASIE----CDDPVIFLE 173 (338)
T ss_dssp CCHHHHTTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred cHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----cCCcEEEEE
Confidence 23221 232 55444433 89999999999885 479999843
No 85
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=80.46 E-value=3.9 Score=42.79 Aligned_cols=110 Identities=19% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh--hc
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT--RG 272 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~--~a 272 (423)
+..-+|.|.|.+ .++-.++++..|=|++|. .-++..|-.-++|||+|.-+-.........-+ ..|... +.
T Consensus 60 ~Aa~aAdGyAr~---tG~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~~~~Q--e~d~~~~~~~ 131 (578)
T 3lq1_A 60 SAGFFALGLAKA---SKRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNVGAPQ--AMDQLHLYGS 131 (578)
T ss_dssp HHHHHHHHHHHH---HCCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTSSCTT--CCCCTTTTGG
T ss_pred HHHHHHHHHHHh---hCCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCC--CcCHhhHHhh
Confidence 344456666654 344556666667777765 34588899999999999865432110000000 011111 00
Q ss_pred CCCCeEEee-CCCHH----HHHHHHHHHHHHhhCC-CCcEEEEEEE
Q psy4881 273 DYIPGIWVD-GMDIL----AVREAARFAVNHCRSD-KGPILLETAT 312 (423)
Q Consensus 273 ~G~~~~~Vd-G~d~~----~v~~al~~A~~~ar~~-~gP~lIev~t 312 (423)
+--....|. ..+.. .+..++++|+..|+.+ .||+.|++..
T Consensus 132 ~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 132 HVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp GSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred heeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 101123443 12322 2345777787777775 5999999975
No 86
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=80.11 E-value=5.3 Score=39.59 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHHHHH-hHhc--------CCCEEEEEecCCcccccccccccCC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEVYNI-AKLW--------NIPCIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~EaLn~-A~~~--------~LPvi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
.+++|.|+|++ + -++++.+ +++... ..++.+.+ ++.. ++|+++++.+-+..-... .++
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~---~hs- 177 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL---YHS- 177 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCc---ccc-
Confidence 37777777765 3 4566655 999772 22454544 4544 999999887554311111 111
Q ss_pred chhhh--hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 266 VDYYT--RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 266 ~~~~~--~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
..+.+ ++. |+..+.-. |+.+....++.|++ .++|++|-
T Consensus 178 ~~~~a~l~~iPnl~V~~Ps--d~~e~~~ll~~A~~----~~~Pv~i~ 218 (369)
T 1ik6_A 178 NSPEAIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFL 218 (369)
T ss_dssp --HHHHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred ccHHHHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 11211 222 44444333 89999999998884 57899984
No 87
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=79.75 E-value=3.6 Score=42.88 Aligned_cols=117 Identities=9% Similarity=0.097 Sum_probs=65.8
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCccc-cccc--cccc
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGM-GTSS--ERAS 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi-~~~~--~~~~ 263 (423)
++.+.+=.+..-+|.|.|.+ .+ -..+++..|=|+++. .-++..|...++|+|+|.-+..... .... ....
T Consensus 66 ~i~~~~E~~A~~~A~GyAr~---tG-~~v~~~tsGpG~~N~---~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~ 138 (570)
T 2vbf_A 66 WIGNANELNASYMADGYART---KK-AAAFLTTFGVGELSA---INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTL 138 (570)
T ss_dssp EEECSSHHHHHHHHHHHHHH---HS-CEEEEEETTHHHHHH---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred EECcCcHHHHHHHHHHHHHH---hC-CeEEEEcCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeec
Confidence 33334434455667776654 24 445556666666554 4558888889999999997765421 1100 0000
Q ss_pred CCchh---hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 ASVDY---YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 ~~~~~---~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
...+| .. +.+-...+++. + +++...+++|++.+..+.||+.|++...
T Consensus 139 ~~~~~~~~~~~~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 139 ADGDFKHFMKMHEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp SSSCCCHHHHHTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred cccchHHHHHHhhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 00011 11 11223345665 4 5666667777766666679999999764
No 88
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=79.73 E-value=2.8 Score=43.66 Aligned_cols=110 Identities=9% Similarity=0.037 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc-c--ccccccCC---chh
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG-T--SSERASAS---VDY 268 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~-~--~~~~~~~~---~~~ 268 (423)
+..-+|.|.|... + -..+++..|=|+++. .-++..|...++|+|+|.-+-..... . ........ .++
T Consensus 53 ~Aa~~A~Gyar~t---g-~~v~~~TsGpG~~N~---~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~ 125 (563)
T 2vk8_A 53 NAAYAADGYARIK---G-MSCIITTFGVGELSA---LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVF 125 (563)
T ss_dssp HHHHHHHHHHHHH---S-CEEEEEETTHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHH
T ss_pred HHHHHHHHHHHhh---C-CcEEEEcCCCcHHHH---HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHH
Confidence 3455566666553 4 335566667777664 34588888899999999876543110 0 00000000 022
Q ss_pred hh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 269 YT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 269 ~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
.+ +.+--...++. +++++.+.+.+|+..+....||+.|++...
T Consensus 126 ~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 170 (563)
T 2vk8_A 126 HRMSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPAN 170 (563)
T ss_dssp HHHHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEETT
T ss_pred HHHhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 11 11222345665 666666667777666655679999998754
No 89
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=79.40 E-value=6.3 Score=42.62 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++.++.+ |.+ ..++.+..++..++||+++....+++.+ .++. .+..+.+- ++
T Consensus 460 mv~~AaGlA~~----~G~~Pv~~~f~~--F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr~ 530 (711)
T 3uk1_A 460 MSAAINGLVLH----GGYKPFGGTFLT--FSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLRL 530 (711)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEEhHH--HHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHhc
Confidence 37777787762 245677776643 333 2356688888999999999987776532 2221 11222221 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
. |+..++= .|..++..+++.|++ .++|++|-
T Consensus 531 iPnl~V~~P--ad~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 531 IPNLDVWRP--ADTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp STTCEEECC--SSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCCEEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 2 4433322 378899999998885 58999883
No 90
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=77.92 E-value=5.4 Score=38.56 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHHHHH-hHh--------cCCCEEEEEecCCc-ccccccccccC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEVYNI-AKL--------WNIPCIFVCENNGY-GMGTSSERASA 264 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~EaLn~-A~~--------~~LPvi~Vv~NN~~-gi~~~~~~~~~ 264 (423)
.+++|.|+|++ + -++++++ ++++.. ..++.+.. ++. .++|+++++. .+. +-.... ++
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~---hs 129 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL---HS 129 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT---SS
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc---cc
Confidence 47777777765 3 3455544 888762 23565643 443 7999998875 343 111111 11
Q ss_pred CchhhhhcCCCCeE-EeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 265 SVDYYTRGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 265 ~~~~~~~a~G~~~~-~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
..+. .....+|++ -+.=.|+.+....++.|++ .++|++|-
T Consensus 130 ~~~~-a~~~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~ 170 (324)
T 1w85_B 130 DSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFL 170 (324)
T ss_dssp CCCH-HHHTTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred ccHH-HHHccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEE
Confidence 1111 111134432 2222389999999999884 57899984
No 91
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=77.06 E-value=9.5 Score=36.79 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHHHHH-hHh--------cCCCEEEEEecCCcccccccccccCC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEVYNI-AKL--------WNIPCIFVCENNGYGMGTSSERASAS 265 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~EaLn~-A~~--------~~LPvi~Vv~NN~~gi~~~~~~~~~~ 265 (423)
.+++|.|+|++ + -++++++ ++++.. ..++.+.. ++. .++|+++++. .+++.. ....++.
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~--~g~~hs~ 131 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYIF---PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVR--GGHHHSQ 131 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGCG---GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSS--CGGGSSC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCC--CCCccch
Confidence 47778888776 3 3555554 888762 23565643 443 6999998876 343111 1111111
Q ss_pred chhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEE
Q psy4881 266 VDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLE 309 (423)
Q Consensus 266 ~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIe 309 (423)
.+.+- +.. |+..+.- .|+.+....++.|++ .++|++|-
T Consensus 132 ~~~a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 132 SPEAHFVHTAGLKVVAV--STPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CCHHHHHTSTTCEEEEC--CSHHHHHHHHHHHHH----CSSCEEEE
T ss_pred hHHHHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 12211 222 4444433 389999999999984 57899884
No 92
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=76.78 E-value=4.4 Score=43.01 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHH-HHHHhHhcCCCEEEEEecCCc-ccccccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFE-VYNIAKLWNIPCIFVCENNGY-GMGTSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~E-aLn~A~~~~LPvi~Vv~NN~~-gi~~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|++ + -++++.++.++.. ..+| .++.++..++|+++++.+-+. |-..+++. ...+.+- +.
T Consensus 376 ~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~--~~~d~a~~r~ 445 (629)
T 2o1x_A 376 AVTTAAGMALQ----G-MRPVVAIYSTFLQ---RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHN--GVFDLSFLRS 445 (629)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEEHHHHG---GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTC--BCSHHHHTTT
T ss_pred HHHHHHHHHHc----C-CEEEEEecHHHHH---HHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccC--ccHHHHHHHc
Confidence 47777777765 3 5677777777542 2243 367789999999999866554 21111111 1122221 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
. |+..+.- .|+.++...++.|++ .++|++|-.
T Consensus 446 iP~l~v~~P--~d~~e~~~~~~~a~~----~~~Pv~i~~ 478 (629)
T 2o1x_A 446 IPGVRIGLP--KDAAELRGMLKYAQT----HDGPFAIRY 478 (629)
T ss_dssp STTCEEECC--SSHHHHHHHHHHHHH----SSSCEEEEC
T ss_pred cCCcEEEec--CCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 2 4444433 389999999999985 378999854
No 93
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=75.27 E-value=13 Score=40.01 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccc--cccccccCCchhhh-hc
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG--TSSERASASVDYYT-RG 272 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~--~~~~~~~~~~~~~~-~a 272 (423)
.+++|.|+|+. +.-++++..+..=+.. ..-++..++..++||+++....++|.+ .+++ .+..+.+- +.
T Consensus 444 mv~~A~GlA~~----gG~~Pv~~tF~~F~d~---~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~ 514 (700)
T 3rim_A 444 MGAILSGIVLH----GPTRAYGGTFLQFSDY---MRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRA 514 (700)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGGGG---GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHHHH---HHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhc
Confidence 36777777775 4456666544322211 123477889999999999987776532 2222 11222222 22
Q ss_pred C-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCC--CcEEEE
Q psy4881 273 D-YIPGIWVDGMDILAVREAARFAVNHCRSDK--GPILLE 309 (423)
Q Consensus 273 ~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~--gP~lIe 309 (423)
. |+..++= .|..++..+++.|++ ..+ +|++|-
T Consensus 515 iPnl~V~~P--ad~~e~~~~l~~Ai~---~~~~~~Pv~ir 549 (700)
T 3rim_A 515 IPRLSVVRP--ADANETAYAWRTILA---RRNGSGPVGLI 549 (700)
T ss_dssp STTCEEECC--SSHHHHHHHHHHHHT---TTTCSSCEEEE
T ss_pred CCCCEEEeC--CCHHHHHHHHHHHHH---ccCCCCCEEEE
Confidence 2 4433322 278899999988884 234 799984
No 94
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=74.89 E-value=5.1 Score=41.45 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=65.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccc---c
Q psy4881 187 LVTVTNQLVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERA---S 263 (423)
Q Consensus 187 ~~~~sg~~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~---~ 263 (423)
++.+.+=.+..-+|.|.|.+. + ...+++..|=|.++. .-++..|...++|+|+|.-+-........... .
T Consensus 46 ~i~~~~E~~A~~~A~Gyar~t---g-~~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~ 118 (552)
T 1ovm_A 46 WVGCANELNASYAADGYARCK---G-FAALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTL 118 (552)
T ss_dssp EEECSSHHHHHHHHHHHHHHH---S-CEEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred EEeeCcHHHHHHHHHHHHHhh---C-CcEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCCHHHHhccccccccc
Confidence 343444445566777777663 3 335666677777654 34588899999999999976543211000000 0
Q ss_pred C---Cchhhh--hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Q psy4881 264 A---SVDYYT--RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313 (423)
Q Consensus 264 ~---~~~~~~--~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~ 313 (423)
. ..++.+ +.+-...+.+. + +++...+.+|+..+....||+.|++...
T Consensus 119 g~~~~q~~~~~~~~~tk~~~~v~--~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 119 GDGEFRHFYHMSEPITVAQAVLT--E-QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp SSSCCSHHHHHTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred CCCcHHHHHHHHHhheeEEEEEc--c-ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 0 011211 11222345665 4 4555666666665555569999999764
No 95
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=73.87 E-value=9.1 Score=37.35 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHHHhcCCCCEEEEE-eCCCccchhhHHHHHH-HhHhc--------CC-CEEEEEecCCcccccccccccC
Q psy4881 196 TVPLGVGIALAAKYSGTKGVCFAL-YGDGAANQGQVFEVYN-IAKLW--------NI-PCIFVCENNGYGMGTSSERASA 264 (423)
Q Consensus 196 ~l~~A~GaA~a~k~~~~~~~vv~~-~GDGa~~~G~~~EaLn-~A~~~--------~L-Pvi~Vv~NN~~gi~~~~~~~~~ 264 (423)
.+++|.|+|++ + -++++.+ ++++.. ..++.+. .++.+ ++ |+++++..-+.+ ..+.+ ++
T Consensus 79 ~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~-~G~th--~~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVG-HGALY--HS 147 (342)
T ss_dssp HHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCS-SCGGG--SS
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCC-CCcch--hh
Confidence 47777777765 3 4566654 888863 2345554 45543 44 999987643321 11111 11
Q ss_pred Cchhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEE
Q psy4881 265 SVDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLET 310 (423)
Q Consensus 265 ~~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev 310 (423)
..+..- ++. |+..+.- .|+.+....++.|++ .++|++|-.
T Consensus 148 ~~d~~~l~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i~~ 189 (342)
T 2bfd_B 148 QSPEAFFAHCPGIKVVIP--RSPFQAKGLLLSCIE----DKNPCIFFE 189 (342)
T ss_dssp CCCHHHHHTSTTCEEECC--SSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred HhHHHHHhcCCCcEEEee--CCHHHHHHHHHHHHh----cCCcEEEEe
Confidence 122211 222 4433333 389999999999885 379999843
No 96
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=73.42 E-value=25 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
|+-.++..|.|.+++.+|+++.+..+|+..|.+
T Consensus 83 gvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 83 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 444567888899999999999999999987753
No 97
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=63.14 E-value=14 Score=42.50 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCc-c--cccccccccCCchh-hh
Q psy4881 195 VTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGY-G--MGTSSERASASVDY-YT 270 (423)
Q Consensus 195 g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~-g--i~~~~~~~~~~~~~-~~ 270 (423)
+.+++++|++++ | .++++.+--.++.. ..|.|..++-..+|+|+++.+-.. + ++...+ ..++ +.
T Consensus 65 aA~~aaiGAa~a----G--aR~~t~Ts~~Gl~l--m~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~----hsd~~~a 132 (1231)
T 2c42_A 65 GAAGAVHGALAA----G--ALTTTFTASQGLLL--MIPNMYKISGELLPGVFHVTARAIAAHALSIFGD----HQDIYAA 132 (1231)
T ss_dssp HHHHHHHHHHHT----T--CCEEEEECHHHHHH--HHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCC----SHHHHTT
T ss_pred HHHHHHHHHHHc----C--ChHhhhccHHHHHH--HHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCc----hhhHHHH
Confidence 345566666654 3 34554443333332 357776555568998888876553 1 222111 1222 23
Q ss_pred hcCCCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCC
Q psy4881 271 RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 319 (423)
Q Consensus 271 ~a~G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~ 319 (423)
+..|++.+ .-.++.+.+.-+..|.+.+.+..-|+++-...+| .+|.
T Consensus 133 r~~G~~vl--~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~-~sh~ 178 (1231)
T 2c42_A 133 RQTGFAML--ASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFR-TSHE 178 (1231)
T ss_dssp TTSSCEEE--ECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTT-TTTC
T ss_pred hcCCcEEE--ECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcc-cccc
Confidence 44466443 3348999998888887777778899997666655 3664
No 98
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=61.41 E-value=20 Score=37.17 Aligned_cols=109 Identities=12% Similarity=0.020 Sum_probs=59.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecCCcccccccccccCCchhhh--h
Q psy4881 194 LVTVPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGTSSERASASVDYYT--R 271 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN~~gi~~~~~~~~~~~~~~~--~ 271 (423)
.+..-+|.|.|.. .++-.++++..|=|++|. .-++..|-.-+.|||+|.-+-..........+ ..|... +
T Consensus 56 ~~Aa~~AdGyAr~---tG~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~ 127 (556)
T 3hww_A 56 RGLGHLALGLAKV---SKQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFA 127 (556)
T ss_dssp HHHHHHHHHHHHH---HCSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTT
T ss_pred cHHHHHHHHHHHh---hCCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHh
Confidence 3344556666654 344455666667777775 34588899999999999865543211100000 111111 0
Q ss_pred cCCCCeEEeeCC----CHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Q psy4881 272 GDYIPGIWVDGM----DILAVREAARFAVNHCRSDKGPILLETAT 312 (423)
Q Consensus 272 a~G~~~~~VdG~----d~~~v~~al~~A~~~ar~~~gP~lIev~t 312 (423)
.+--..+.+..- ..+.+.+++++|+.. ...||+.|++..
T Consensus 128 ~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 128 SHPTHSISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp TCSSEEEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred hheeEEEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 011112344311 134588888888831 235899999975
No 99
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=54.73 E-value=17 Score=31.76 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=30.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy4881 332 EIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374 (423)
Q Consensus 332 e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~ 374 (423)
-++.| +..+++.|+++|++|++|+++..++++++...
T Consensus 108 YYe~W------L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~ 144 (157)
T 2zzd_B 108 YYGRW------LLTAARILVDKQFVTLTELHNKIVEMRERVAS 144 (157)
T ss_dssp HHHHH------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 35666 45799999999999999999999998887654
No 100
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=49.84 E-value=21 Score=26.39 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.1
Q ss_pred EEeeCCCHHHHHHHHHHHHHHhhCCCCcE
Q psy4881 278 IWVDGMDILAVREAARFAVNHCRSDKGPI 306 (423)
Q Consensus 278 ~~VdG~d~~~v~~al~~A~~~ar~~~gP~ 306 (423)
++..|.|.+++..|+++.+..+|+..|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 56678899999999999999999988753
No 101
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=43.06 E-value=23 Score=29.47 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=54.9
Q ss_pred CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEEEEEEecCCCCCCCCCCCCcCChhHHHHHHhcCChHHHHHHHHHHc
Q psy4881 274 YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNA 353 (423)
Q Consensus 274 G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 353 (423)
|+-.++..|.|.+++.+|+++.+..+|+..|.+ ||-+.|....-. .---|+.+... +..-.++|.++
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv-----tytl~gn~l~i~--itgvpeqvrke------lakeaerl~~e 68 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV-----TYTLSGNRLVIV--ITGVPEQVRKE------LAKEAERLKAE 68 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE-----EEEEETTEEEEE--EESCCHHHHHH------HHHHHHHHHHH
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE-----EEEEeCCEEEEE--EeCCcHHHHHH------HHHHHHHHHHh
Confidence 444567889999999999999999999987754 333333210000 00012222211 12223333322
Q ss_pred -CC-----------------CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4881 354 -SL-----------------VTPEELKKIDTEVKAEIDAVIKKAR 380 (423)
Q Consensus 354 -g~-----------------~~~~~~~~i~~e~~~~v~~a~~~A~ 380 (423)
++ +..++++++++..++.|..|.+||-
T Consensus 69 fni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfag 113 (170)
T 4hhu_A 69 FNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAG 113 (170)
T ss_dssp HTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcc
Confidence 11 1236788999999999888888764
No 102
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=40.51 E-value=1e+02 Score=34.19 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=57.5
Q ss_pred cCCCCC--CcHHHHHHHHHHHhcCCCCEEE--EEeCCCccchhhHHHHHHHhH--hc--CCCEEEEEecCCc-ccccccc
Q psy4881 190 VTNQLV--TVPLGVGIALAAKYSGTKGVCF--ALYGDGAANQGQVFEVYNIAK--LW--NIPCIFVCENNGY-GMGTSSE 260 (423)
Q Consensus 190 ~sg~~g--~l~~A~GaA~a~k~~~~~~~vv--~~~GDGa~~~G~~~EaLn~A~--~~--~LPvi~Vv~NN~~-gi~~~~~ 260 (423)
.++..- .+++|.|+|++ ++...+| +.+||=...-...++-+-..+ .| ++||++++-. ++ |.+ +..
T Consensus 656 ds~IaE~~~vg~a~G~A~~----G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g~G-~~H 729 (933)
T 2jgd_A 656 DSVLSEEAVLAFEYGYATA----EPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEGQG-PEH 729 (933)
T ss_dssp CCCSCHHHHHHHHHHHHHH----CTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSSSC-TTS
T ss_pred ECCcCHHHHHHHHHHHHhc----CCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCCCC-ccc
Confidence 444443 37777777776 6554343 367764321113344443333 34 8999988875 55 332 211
Q ss_pred cccCCchhhhh-cC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 261 RASASVDYYTR-GD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 261 ~~~~~~~~~~~-a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
......+|... +. |+..+.- .|+.+....++.++. +..++|++|
T Consensus 730 ss~~~E~~l~~~~~pnm~V~~P--st~~e~~~lLr~a~~--~~~~~Pvii 775 (933)
T 2jgd_A 730 SSARLERYLQLCAEQNMQVCVP--STPAQVYHMLRRQAL--RGMRRPLVV 775 (933)
T ss_dssp SCCCHHHHHHTCCTTCCEEECC--CSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred ccchHHHHHHHhCCCCeEEEec--CCHHHHHHHHHHHHH--hcCCCcEEE
Confidence 11112344432 21 4443333 378898888887742 234799998
No 103
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=39.19 E-value=28 Score=31.93 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcCC
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARADP 383 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~p 383 (423)
...++..|+++|+++.++++++.+.+..++ .+.+++|+..|
T Consensus 40 ~~Al~~lL~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp 85 (226)
T 3qyh_A 40 VKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDP 85 (226)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCH
Confidence 356899999999999999999887776553 34456666543
No 104
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=39.10 E-value=1e+02 Score=34.03 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=57.0
Q ss_pred cCCCCC--CcHHHHHHHHHHHhcCCCCEEE--EEeCCCccchhh--HHHHHHHhHh--c--CCCEEEEEecCCccccccc
Q psy4881 190 VTNQLV--TVPLGVGIALAAKYSGTKGVCF--ALYGDGAANQGQ--VFEVYNIAKL--W--NIPCIFVCENNGYGMGTSS 259 (423)
Q Consensus 190 ~sg~~g--~l~~A~GaA~a~k~~~~~~~vv--~~~GDGa~~~G~--~~EaLn~A~~--~--~LPvi~Vv~NN~~gi~~~~ 259 (423)
.++..- .+++|+|+|++ +++..++ +.+|| |..+. .+.-+-..+. | ++||++++-.-+.|.+ +.
T Consensus 588 ds~IsE~~~vG~a~G~A~~----G~~~~~i~eaqf~d--F~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~G-p~ 660 (868)
T 2yic_A 588 NSALSEFAAVGFEYGYSVG----NPDAMVLWEAQFGD--FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQG-PD 660 (868)
T ss_dssp ECCSCSHHHHHHHHHHHHH----CTTSEEEEECSSGG--GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSC-TT
T ss_pred ECCccHHHHHHHHHHHHcc----CCCCceEEEEehHH--HHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCC-hh
Confidence 455443 37788887776 6665554 44555 43332 2333433332 2 8899888874332322 11
Q ss_pred ccccCCchhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 260 ERASASVDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 260 ~~~~~~~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
.......+|.. ++. |+..+.- .|+.+....++.++. +..++|++|
T Consensus 661 Hs~~~~E~~l~l~~~pnm~V~~P--s~p~~~~~lLr~a~~--~~~~~Pvii 707 (868)
T 2yic_A 661 HTSGRIERFLQLWAEGSMTIAMP--STPANYFHLLRRHGK--DGIQRPLIV 707 (868)
T ss_dssp SSCCCHHHHHHHCCTTSCEEECC--CSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred hcCCcHHHHHhcCCCCCCEEEEe--CCHHHHHHHHHHHHh--cCCCCcEEE
Confidence 11111234443 222 4443333 378898888887764 124589876
No 105
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=32.24 E-value=42 Score=30.03 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCEEEEEeCCCcc-chhhHHHHHHHhH-hcCCCEEEEEec
Q psy4881 204 ALAAKYSGTKGVCFALYGDGAA-NQGQVFEVYNIAK-LWNIPCIFVCEN 250 (423)
Q Consensus 204 A~a~k~~~~~~~vv~~~GDGa~-~~G~~~EaLn~A~-~~~LPvi~Vv~N 250 (423)
-+-.+++.. ..+|+++|+=.- ..+..|| +..|. ..++|||.|-.+
T Consensus 72 rLReRI~~S-k~vIllIs~~T~~s~~v~wE-Ie~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 72 RLHTRLDNS-KNIILFLSSITANSRALREE-MNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHHTE-EEEEEECCTTCCCCHHHHHH-HHHHTTTTCCCEEEEETT
T ss_pred HHHHHHHhc-CcEEEEEecCccccchhHHH-HHHHHHhcCCcEEEEECC
Confidence 344445443 468889998884 4566665 99999 999999999876
No 106
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=31.64 E-value=39 Score=30.81 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcC
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARAD 382 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~ 382 (423)
...++..|+++|+++.++++++.+.+..++ .+.+++|+..
T Consensus 29 ~~Al~~ll~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D 73 (216)
T 3hht_A 29 AKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 73 (216)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 467899999999999999999887765542 3345555543
No 107
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=31.44 E-value=1.5e+02 Score=33.67 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=56.9
Q ss_pred cCCCCC--CcHHHHHHHHHHHhcCCCCEEE--EEeCCCccchhh--HHHHHHHhHh--c--CCCEEEEEecCCccccccc
Q psy4881 190 VTNQLV--TVPLGVGIALAAKYSGTKGVCF--ALYGDGAANQGQ--VFEVYNIAKL--W--NIPCIFVCENNGYGMGTSS 259 (423)
Q Consensus 190 ~sg~~g--~l~~A~GaA~a~k~~~~~~~vv--~~~GDGa~~~G~--~~EaLn~A~~--~--~LPvi~Vv~NN~~gi~~~~ 259 (423)
.++..- .+++|.|+|++ +++..++ +.+|| |..+. .++-+-..+. | ++||++.+-.-+.|.+ +.
T Consensus 833 ds~IsE~~~vg~a~G~A~~----G~~~~~i~Eaqf~d--F~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G~G-~~ 905 (1113)
T 2xt6_A 833 NSALSEFAAVGFEYGYSVG----NPDAMVLWEAQFGD--FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQG-PD 905 (1113)
T ss_dssp ECCSCSHHHHHHHHHHHHH----CTTSEEEEECSSGG--GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSC-TT
T ss_pred ECCCCHHHHHHHHHHHHhc----CCCCceEEEEEEHH--HHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCC-hh
Confidence 455443 37788888776 6665554 45555 43332 2333333332 2 8899988874322322 11
Q ss_pred ccccCCchhhh-hcC-CCCeEEeeCCCHHHHHHHHHHHHHHhhCCCCcEEE
Q psy4881 260 ERASASVDYYT-RGD-YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILL 308 (423)
Q Consensus 260 ~~~~~~~~~~~-~a~-G~~~~~VdG~d~~~v~~al~~A~~~ar~~~gP~lI 308 (423)
.......+|.. ++. |+..+.- .++.+....++.++. +..++|++|
T Consensus 906 Hs~~~~E~~l~l~~~pnm~V~~P--s~~~~~~~lLr~a~~--~~~~~Pvii 952 (1113)
T 2xt6_A 906 HTSGRIERFLQLWAEGSMTIAMP--STPANYFHLLRRHGK--DGIQRPLIV 952 (1113)
T ss_dssp SSCCCHHHHHHHCCTTSCEEECC--SSHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred hhcccHHHHHhcCCCCCcEEEec--CCHHHHHHHHHHHHh--ccCCCCEEE
Confidence 11111224433 121 4433333 378898888888764 134589887
No 108
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=31.02 E-value=76 Score=27.91 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHHhcC----CCCE-EEEEeCCCccchhhHHHHHHHhHhcCCCEEEEE
Q psy4881 194 LVTVPLGVGIALAAKYSG----TKGV-CFALYGDGAANQGQVFEVYNIAKLWNIPCIFVC 248 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~----~~~~-vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv 248 (423)
.+.++-|+..|...-... ...+ ++.+.||+....+...++...+...++.|.+|-
T Consensus 83 ~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp CCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEE
Confidence 345777777776432221 1223 555556664445666677777777887766654
No 109
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=30.73 E-value=52 Score=29.58 Aligned_cols=41 Identities=20% Similarity=0.437 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcCC
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARADP 383 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~p 383 (423)
...+++.|+++|++++++++++.+.+...+ .+.+++|+..|
T Consensus 20 ~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp 65 (203)
T 1ugp_A 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCH
Confidence 457899999999999999999988777763 33456666544
No 110
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=30.28 E-value=7.3 Score=33.94 Aligned_cols=37 Identities=11% Similarity=-0.088 Sum_probs=23.7
Q ss_pred cccCCCCCc--cc--cccCCCCCCCCcc---cccCCCccccceeec
Q psy4881 22 CYPVEDTTE--KV--FGPLDYENIPSEE---FWGTEPRRLINKYYS 60 (423)
Q Consensus 22 ~~~~~~~~~--~~--~g~~~~~~~~~~~---~~~~~~~~~~n~~~~ 60 (423)
+||.+| | ++ +|+++.++....+ ....++|.++.++.+
T Consensus 74 ~~~~~h--p~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~iG~~ 117 (170)
T 3cf4_G 74 VLADKD--VDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFK 117 (170)
T ss_dssp HHTTSS--SCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEESCC
T ss_pred ccCCCC--hhhhcceeeeccccCChhhhhHHHHhhcCCEEEEECCc
Confidence 457777 6 77 7777666665555 555666666666655
No 111
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=29.88 E-value=46 Score=29.00 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHHHHhcC-CCCEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecC
Q psy4881 194 LVTVPLGVGIALAAKYSG-TKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 194 ~g~l~~A~GaA~a~k~~~-~~~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
++.+..|+-.|+..-... ....+|.++.||..+.+...+.+..+...+++|..|-.-+
T Consensus 91 ~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 91 GTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp SCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESC
T ss_pred CCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecC
Confidence 344666666655321112 3457899999999877766777888888888877665543
No 112
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=29.56 E-value=34 Score=21.91 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy4881 348 DKILNASLVTPEELKKIDTEVKAEID 373 (423)
Q Consensus 348 ~~L~~~g~~~~~~~~~i~~e~~~~v~ 373 (423)
..|.++|--+.+|+.++++..+++|+
T Consensus 13 qaleargtdsnaelrameaklkaeiq 38 (40)
T 1abz_A 13 QALEARGTDSNAELRAMEAKLKAEIQ 38 (40)
T ss_dssp HHHHHTCSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHh
Confidence 45677898889999999999999875
No 113
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=26.74 E-value=41 Score=30.50 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcCC
Q psy4881 344 SSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARADP 383 (423)
Q Consensus 344 ~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~p 383 (423)
..+++.|+++|+++.++++.+.+.+...+ .+.+++|+..|
T Consensus 24 ~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP 68 (207)
T 3a8g_A 24 WALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDP 68 (207)
T ss_dssp HHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCH
Confidence 36899999999999999999888777763 33456666544
No 114
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=26.37 E-value=47 Score=30.09 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HHHHHHHHcC
Q psy4881 343 ISSLKDKILNASLVTPEELKKIDTEVKAEI-----DAVIKKARAD 382 (423)
Q Consensus 343 i~~~~~~L~~~g~~~~~~~~~i~~e~~~~v-----~~a~~~A~~~ 382 (423)
+..++..|+++|+++++.++.+.+.+..++ ...+++|+..
T Consensus 13 v~ALe~lL~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~D 57 (209)
T 4fm4_A 13 VDALFVLTKELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTD 57 (209)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCC
Confidence 456889999999999999998888776543 3345555543
No 115
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=25.32 E-value=83 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.3
Q ss_pred CEEEEEeCCCccchhhHHHHHHHhHhcCCCEEEEEecC
Q psy4881 214 GVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENN 251 (423)
Q Consensus 214 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvi~Vv~NN 251 (423)
..||+.++ ....|..+| +..|...+.||+.+..+.
T Consensus 79 D~vva~~~--~~d~Gt~~E-iGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 79 DVVVAEVT--QPSLGVGYE-LGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp SEEEEECS--SCCHHHHHH-HHHHHHTCSSEEEEECTT
T ss_pred CEEEEECC--CCCCCHHHH-HHHHHHCCCEEEEEEcCC
Confidence 35555665 567788888 999999999999887655
No 116
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.29 E-value=1e+02 Score=21.09 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=8.1
Q ss_pred hhHHHHHHhcCChHHHHHH
Q psy4881 330 RDEIQEVRQTRDPISSLKD 348 (423)
Q Consensus 330 ~~e~~~~~~~~DPi~~~~~ 348 (423)
..+++.|+ .+-+..+|+
T Consensus 6 ~~dle~~K--qEIL~E~Rk 22 (45)
T 1use_A 6 YSDLQRVK--QELLEEVKK 22 (45)
T ss_dssp HHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHH
Confidence 44566554 244444444
No 117
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=21.10 E-value=1.6e+02 Score=27.07 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4881 332 EIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTE 367 (423)
Q Consensus 332 e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e 367 (423)
-++.|. ..+++.|+++|++|++||++..++
T Consensus 72 YYe~WL------~ale~lLvekGvit~~EL~~r~~~ 101 (229)
T 3hht_B 72 YYGHWI------ATVAYNLVDTGVLDEKELDERTEV 101 (229)
T ss_dssp HHHHHH------HHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 367774 469999999999999999887665
Done!