RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4881
(423 letters)
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 372 bits (957), Expect = e-127
Identities = 135/218 (61%), Positives = 162/218 (74%)
Query: 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG 256
VPLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMG
Sbjct: 146 VPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMG 205
Query: 257 TSSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 316
TS ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY
Sbjct: 206 TSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 265
Query: 317 GHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
GH MSDPG SYRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+
Sbjct: 266 GHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 325
Query: 377 KKARADPEVGLDELTGDIYAVPLETDIRGTTPFNSYPH 414
+ A ADPE L+EL IY+ ++RG + +
Sbjct: 326 QFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKS 363
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 235 bits (601), Expect = 4e-74
Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 3/204 (1%)
Query: 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG 256
VP G A++ K T V +GDGA ++G + N A + P +F+ ENN Y +
Sbjct: 150 VPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAIS 209
Query: 257 TSSERASASVDYYTRGD-Y-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314
+ S + + IPG VDGMD+LA + AV R +GP L+E YR
Sbjct: 210 VDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYR 269
Query: 315 YSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374
Y HS +D + YR ++E+ R+ +DPI + + L E + + E++AE++
Sbjct: 270 YGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328
Query: 375 VIKKARADPEVGLDELTGDIYAVP 398
+K+A V + + D++A
Sbjct: 329 GLKEAEEAGPVPPEWMFEDVFAEK 352
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 221 bits (565), Expect = 8e-69
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Query: 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG 256
G+AL K G K V GDG +QG +E N A + P IFV +NN + +
Sbjct: 148 YIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAIS 207
Query: 257 TSSERASASVDYYTRGD-Y-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314
T E+ + + + IPGI VDGMD LAV A + A + +GP L+ET +R
Sbjct: 208 TPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267
Query: 315 YSGHSMS--DPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEI 372
Y H+MS DP T YR+++ E + +DP+ + + L + EE + + K EI
Sbjct: 268 YGPHTMSGDDP-TRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEI 325
Query: 373 DAVIKKARADPEVGLDELTGDIYAVP 398
IKKA P+ + +L ++
Sbjct: 326 KEAIKKADETPKQKVTDLISIMFEEL 351
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 213 bits (545), Expect = 2e-65
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG 256
+P VG A AAK + V +G+GAA++G +N A P IF C NNGY +
Sbjct: 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIS 227
Query: 257 TSSERASASVDYYTRGD-Y-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314
T + RG Y I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 228 TPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287
Query: 315 YSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374
S SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 288 IGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVME 347
Query: 375 VIKKARADPEVGLDELTGDIYAVP 398
++A P+ + L D+Y
Sbjct: 348 AFEQAERKPKPNPNLLFSDVYQEM 371
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 205 bits (523), Expect = 4e-62
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 10/211 (4%)
Query: 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG 256
VG A+A+ G + A GDGA + A ++ P I NN + +
Sbjct: 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIS 246
Query: 257 TSSERASASVD-YYTRGD-Y-IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATY 313
T A + RG I + VDG D +AV A+R+A R GP L+E TY
Sbjct: 247 TFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTY 306
Query: 314 RYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEID 373
R HS SD + YR D+ DPI+ LK ++ + EE + E +A +
Sbjct: 307 RAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVI 365
Query: 374 AVIKKARADPEVG------LDELTGDIYAVP 398
A K+A + + D+Y
Sbjct: 366 AAQKEAEQYGTLANGHIPSAASMFEDVYKEM 396
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein;
1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Length = 83
Score = 68.3 bits (166), Expect = 1e-14
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 50 EPRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNV 108
E IN K+ D V D + + + CRCW+S FP CD S HNK + DNV
Sbjct: 16 EGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNV 75
Query: 109 GPLII 113
GPL++
Sbjct: 76 GPLLL 80
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 67.8 bits (165), Expect = 1e-14
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 49 TEPRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDN 107
+ LIN K + V + I D + A CRCW+SK FP CD SH HN+ DN
Sbjct: 13 QQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDN 72
Query: 108 VGPLII 113
VGPLI+
Sbjct: 73 VGPLIL 78
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1;
mitochondrial outer membrane, 2Fe-2S proteins, isotopic
LABE highyield expression; 1.40A {Homo sapiens} PDB:
2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Length = 80
Score = 65.9 bits (160), Expect = 6e-14
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 51 PRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGP 110
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGP
Sbjct: 13 NKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 72
Query: 111 LII 113
LII
Sbjct: 73 LII 75
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal
binding protein; HET: 2PE TLA; 1.80A {Ralstonia
solanacearum}
Length = 69
Score = 44.4 bits (105), Expect = 1e-06
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 65 VVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHK 98
V + +CRC S PFCD SHK
Sbjct: 27 VTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHK 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 6e-06
Identities = 64/428 (14%), Positives = 121/428 (28%), Gaps = 137/428 (32%)
Query: 12 CLDLL-TFIPT------CYPVEDTTEKVFGPLDYENI---PSEEFWGTEPRRLINKYYSK 61
D+L F C V+D + + + ++I + RL SK
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---SGTLRLFWTLLSK 74
Query: 62 HHDVVTDRFTID----------TGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
++V +F + + I TE ++ + + ++ + DN
Sbjct: 75 QEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQRDRLYNDNQ--- 124
Query: 112 IIDGNTFPDYVLDKYTLPTPNRSITYPTPSTMSDSQVDKAIDKYVKENEYSQDSDENMTN 171
V KY + + K +++ +N
Sbjct: 125 ----------VFAKYNVSRL------------------QPYLK-LRQALLELRPAKN--- 152
Query: 172 QLVTVTNQLVTVTNQLVTVTNQLVTV--PLGVG-IALAAKYSGTKGVCFALYGDGAANQG 228
V + LG G +A VC
Sbjct: 153 -----------------------VLIDGVLGSGKTWVALD------VCL----SYKVQCK 179
Query: 229 QVFEVY--NIAK----------LWNIPCIFVCENNGYGMGTSSERASA-SVDYYTRGDYI 275
F+++ N+ L + +S+ + S+ R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 276 PGIWVDGMDILA-VREA---ARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRD 331
+ + + +L V+ A F + C+ ILL T R+ ++D ++ T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNL-SCK-----ILLTT---RFK--QVTDFLSAATTTH 288
Query: 332 EIQEVRQ---TRDPISSLKDKILNASLVT-PEELKKIDTEVKAEIDAVIK--KARAD--P 383
+ T D + SL K L+ P E+ + + I I+ A D
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 384 EVGLDELT 391
V D+LT
Sbjct: 349 HVNCDKLT 356
Score = 46.8 bits (110), Expect = 1e-05
Identities = 49/352 (13%), Positives = 98/352 (27%), Gaps = 95/352 (26%)
Query: 95 NSHKYHNKFHKDNVGPLIIDGNTFPDYV--LDKYTLPTPNRSITYPTPSTMSDSQVDKAI 152
H+Y K D I+ +V D + +SI +S ++D I
Sbjct: 12 GEHQYQYK---D-----ILSVFE-DAFVDNFDCKDVQDMPKSI-------LSKEEIDHII 55
Query: 153 DKYVKENEYSQDSDENMTNQLVTV--TNQLVTVTNQLVTVTNQ----LVTVPLGVGIALA 206
+ T +L + Q V + V L++ +
Sbjct: 56 ---------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-------PIK 99
Query: 207 AKYSGTKG--VCFALYGDGAANQGQVFEVYNIA---KLWNI----------PCIFVCENN 251
+ + D N QVF YN++ + + +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---- 155
Query: 252 GYGM---GTSSERASASVDYYTRGDYIPGI-WVDGMDILAVREAARFAVNHCRSDKGPI- 306
G+ G + + Y + I W++ + +C S + +
Sbjct: 156 -DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--------------LKNCNSPETVLE 200
Query: 307 LLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLV------TPEE 360
+L+ Y+ + S S + I ++ + LK K L+ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKA 258
Query: 361 LKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYA-VPLETDIRGTTPFNS 411
+ K ++ R +V D L+ + L+ TP
Sbjct: 259 WNAFNLSCK-----ILLTTR-FKQV-TDFLSAATTTHISLDHHSMTLTPDEV 303
Score = 36.8 bits (84), Expect = 0.015
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 64/192 (33%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKF--PFCDN---SH-KYH--NKF 103
R +++ Y I + + S P+ D SH +H N
Sbjct: 447 RSIVDHY---------------------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 104 HKDNVGPLIIDGNTFPDYVLD------KYTLPTPNRSITYPTPSTMSDSQVDKAIDKYVK 157
H + + F LD K + + + +T+ + Y
Sbjct: 486 HPERM-------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ------LKFYKP 532
Query: 158 ENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVPLGVGIALAAKYSGTKGVCF 217
Y D+D + + + L + L+ + + IAL A+
Sbjct: 533 ---YICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-----LRIALMAEDEA------ 578
Query: 218 ALYGDGAANQGQ 229
++ + A Q Q
Sbjct: 579 -IFEE-AHKQVQ 588
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal
binding protein; 1.50A {Pyrobaculum calidifontis}
Length = 60
Score = 42.2 bits (99), Expect = 9e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 70 FTIDTGIHTEAICRCWKSKKFPFCDNSHK 98
+ + G +CRC S P CD +H
Sbjct: 13 YEVKIGGRAIYLCRCGHSGSKPHCDGTHA 41
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2,
metal binding protein; 1.15A {Magnetospirillum
magneticum}
Length = 87
Score = 38.2 bits (88), Expect = 4e-04
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 61 KHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHK 98
K + +T D T C C SK P CD +HK
Sbjct: 49 KGTGLAPVAYTPDKA-GTAYFCGCKASKAPPLCDGTHK 85
Score = 30.8 bits (69), Expect = 0.18
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 80 AICRCWKSKKFPFCDNSHK 98
C C +SK PFCD SHK
Sbjct: 31 HWCACGRSKAQPFCDGSHK 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.10
Identities = 57/335 (17%), Positives = 94/335 (28%), Gaps = 107/335 (31%)
Query: 10 VICL-DLLTFIPTCYPVEDTTEKVFGPLDYENIPSEEFWGTEPRRLINKYYSKH-HDVVT 67
+I + L ++ T K+ G + G + H +VT
Sbjct: 240 LIGVIQLAHYVVTA--------KLLG-FTPGEL-RSYLKGA----------TGHSQGLVT 279
Query: 68 DRFTIDTGIHTEAICRCWKSKKFPFCDNSHKY-HNKFHKDNVGPLIIDG----NTFPDYV 122
A W+S F + K F I G +P+
Sbjct: 280 AVAI--------AETDSWES----FFVSVRKAITVLFF--------I-GVRCYEAYPNTS 318
Query: 123 LDKYTLP-TPNRSITYPTPSTM------SDSQVDKAIDKYVKENEYSQDSDENMTNQL-V 174
L L + + P+P M + QV ++ K N + Q+ +
Sbjct: 319 LPPSILEDSLENNEGVPSP--MLSISNLTQEQVQDYVN---KTNSHLPAGK-----QVEI 368
Query: 175 TVTN---QLVTVT---NQLVTVTNQL--VTVPLGVGIALAAKYSGTK---GVCF------ 217
++ N LV V+ L + L P G+ + +S K F
Sbjct: 369 SLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPVASP 426
Query: 218 ---ALYGDGAANQGQVFEVYNI---AKLWNIPCIFVCENNGYGM-GTSSERASASVDYYT 270
L + + N+ AK IP ++ +G + S + VD
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VY-DTFDGSDLRVLSGSISERIVDCII 484
Query: 271 RGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGP 305
R P W +F H D GP
Sbjct: 485 RL---PVKWE---------TTTQFKATHI-LDFGP 506
Score = 31.9 bits (72), Expect = 0.55
Identities = 52/311 (16%), Positives = 90/311 (28%), Gaps = 128/311 (41%)
Query: 204 AL--AAKYSGTKGVCFALYGDGAANQGQVFEVY--NIAKLWNIPCIFV---CENNGYGMG 256
AL A G + A++G G QG + Y + L+ + V + + +
Sbjct: 144 ALFRAVG-EGNAQL-VAIFG-G---QGNT-DDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 257 TSSERASASVDYYTRG----------------DY-------IPGI------------WVD 281
+ +T+G DY P I +
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 282 GMD------------------ILAV-----------REAARFAVN-------HCRSDKGP 305
G + AV + R A+ C
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 306 ILLETATYRYS---GHSMSDPGTSYR--TRDEIQE-VRQTRDPISSL-KDKILNASL--- 355
L + S + P S T++++Q+ V +T S L K + SL
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVNG 373
Query: 356 -----VT--PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVP-----LETDI 403
V+ P+ L ++ ++ KA+A GLD+ +P L+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLR--------KAKAPS--GLDQ-----SRIPFSERKLKFSN 418
Query: 404 RG---TTPFNS 411
R +PF+S
Sbjct: 419 RFLPVASPFHS 429
Score = 30.0 bits (67), Expect = 1.8
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 26/117 (22%)
Query: 282 GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD-----PG--TSYRTRDEIQ 334
GMD+ +AA+ N R+D + TY G S+ D P T + ++ +
Sbjct: 1632 GMDLYKTSKAAQDVWN--RADN--HFKD--TY---GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 335 EVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELT 391
+R+ + + + I++ L T +KI E+ + + + L T
Sbjct: 1683 RIRENYSAM--IFETIVDGKLKT----EKIFKEINEHSTSYTFR---SEKGLLS-AT 1729
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 32.1 bits (74), Expect = 0.25
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 319 SMSDPGTSYRTRDEI-QEVRQTRDPISSLKDKILNASLVT---PEELKKIDTEVKAEIDA 374
SM+ + E + + L +VT P + E+ +
Sbjct: 4 SMAPNTSETPANGESGPDALVEQR------GHTL---IVTMNRPSRRNALSGEMMQIMVE 54
Query: 375 VIKKARADPEVGLDELTG 392
+ DP++ LTG
Sbjct: 55 AWDRVDNDPDIRCCILTG 72
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 32.2 bits (74), Expect = 0.27
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 18/78 (23%)
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVT---PEELKKIDTEVKAEIDA 374
++MS+ + + R+ R + L+ + D+ + A++
Sbjct: 2 NAMSEANSGP---GRV--TREQRGHLF----------LIGLDRAGKRNAFDSAMLADLAL 46
Query: 375 VIKKARADPEVGLDELTG 392
+ + E L
Sbjct: 47 AMGEYERSEESRCAVLFA 64
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 32.5 bits (75), Expect = 0.28
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235
G+GIA+AA+ G + GDGA G FE N
Sbjct: 130 GIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMN 165
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 31.7 bits (73), Expect = 0.33
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 18/74 (24%)
Query: 319 SMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKK 378
SM+D RD + + R P NA ++ V + A +
Sbjct: 4 SMADE-VLIEQRDRVLLITINR-P------DARNA----------VNRAVSQGLAAAADQ 45
Query: 379 ARADPEVGLDELTG 392
+ ++ + +TG
Sbjct: 46 LDSSADLSVAIITG 59
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 32.1 bits (74), Expect = 0.39
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 200 GVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYN 235
+G+ALA G A+ GDG+ G N
Sbjct: 132 ALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALN 167
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 31.3 bits (72), Expect = 0.43
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 319 SMSD-PGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
SM+D PG R + + R P + NA I+ V + ++
Sbjct: 4 SMTDAPGALAERRGNVMVITINR-P------EARNA----------INAAVSIGVGDALE 46
Query: 378 KARADPEVGLDELTG 392
+A+ DPEV LTG
Sbjct: 47 EAQHDPEVRAVVLTG 61
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.45
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 24/65 (36%)
Query: 328 RTRDE---IQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPE 384
R E I++ R+ + + L+++D K +KA+ D
Sbjct: 79 RLTQEPESIRKWREEQR-----------------KRLQELDAASKVMEQEWREKAKKD-- 119
Query: 385 VGLDE 389
L+E
Sbjct: 120 --LEE 122
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 31.0 bits (71), Expect = 0.54
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
H M+ Y T+ E + + I ++ ++ T + E
Sbjct: 9 HHMTLNQPEYFTKYENLHFHRDENGILEVR---MH----TNGSSLVFTGKTHREFPDAFY 61
Query: 378 KARADPEVGLDELTG 392
D + + LTG
Sbjct: 62 DISRDRDNRVVILTG 76
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 30.6 bits (70), Expect = 0.75
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
++T P+ ++ V + + + AD + + LTG
Sbjct: 27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG 67
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 30.6 bits (69), Expect = 1.1
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDIR 404
+T + L D + +++ + A DP V + L G + + P R
Sbjct: 179 RLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKR 231
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 29.8 bits (68), Expect = 1.3
Identities = 3/35 (8%), Positives = 8/35 (22%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
+ + + + + LTG
Sbjct: 21 ESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTG 55
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 30.2 bits (69), Expect = 1.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 196 TVPLGVGIALAAKYSGTKGVCFALYGDGAA---NQGQVFEVYNIAKLWNI-PCIFVCENN 251
T +G A AA+ K GDG+ Q E+ + + W + P +FV N+
Sbjct: 418 TTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQ----EISTMIR-WGLKPYLFVLNND 472
Query: 252 GYGM 255
GY +
Sbjct: 473 GYTI 476
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 29.8 bits (68), Expect = 1.6
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 18/75 (24%)
Query: 319 SMSDPGT-SYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIK 377
SMSD T R + + R P NA D + E+ +
Sbjct: 4 SMSDYETLRIRRDGYVLVIGLNR-P------AKRNA----------FDKTMLEELALALG 46
Query: 378 KARADPEVGLDELTG 392
+ D ++ L G
Sbjct: 47 EYETDTDLRAAVLYG 61
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
+T P+ L + + E+ A +A D V L +TG
Sbjct: 23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction,
TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A
{Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B*
1i9c_B*
Length = 483
Score = 29.9 bits (67), Expect = 1.8
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 333 IQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGL 387
++ T+ ++ L+ + + S E+ I E K +D + + + D +G
Sbjct: 341 AAGIKATKMALNMLEGQRMPMSKELETEMAVIKAETKCILDKMFELGKGDLAIGT 395
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 29.5 bits (67), Expect = 2.0
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 347 KDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
+L ++ T + + E+ D E + LTG
Sbjct: 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTG 68
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 29.5 bits (67), Expect = 2.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P E+ ++ A ++ DP V + LTG
Sbjct: 25 PSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTG 59
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 29.0 bits (66), Expect = 2.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P++L ++ AE+ +K+A ADP V +TG
Sbjct: 21 PDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITG 55
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 29.1 bits (66), Expect = 2.5
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
+T P+ + E+++ + A+ D +V + +TG
Sbjct: 21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG 61
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 29.0 bits (66), Expect = 2.6
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
++T P + ++ + + +A AD V + G
Sbjct: 12 VITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYG 52
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 28.7 bits (65), Expect = 3.0
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P+ L ++ ++ + + ++ DP +TG
Sbjct: 46 PDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITG 80
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 28.6 bits (65), Expect = 3.1
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
+V PE + E+ + + ADP V LTG
Sbjct: 11 VVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTG 51
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 178
Score = 28.4 bits (64), Expect = 3.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 273 DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPI 306
Y P I + G+D V F++ + G I
Sbjct: 118 KYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCI 151
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 28.6 bits (65), Expect = 3.2
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
++T P + T + ++ A + D + LTG
Sbjct: 21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 28.7 bits (65), Expect = 3.3
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE+ +D E+ + I+ + + L
Sbjct: 22 PEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQS 56
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 28.7 bits (65), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE+L +DT + E+ I+ A AD V LTG
Sbjct: 24 PEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTG 58
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 28.7 bits (65), Expect = 3.3
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGD 393
PE + AE+ +AR D V + LTG+
Sbjct: 31 PEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGE 66
>3hvn_A Hemolysin, suilysin; beta-strand rich, elongated ROD like, pore
forming, toxin; HET: CFH HTO; 2.85A {Streptococcus suis}
Length = 508
Score = 29.1 bits (64), Expect = 3.5
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 126 YTLPTPNRSITYPTPSTMSDSQVDKAIDKYVKENEYSQDSDENMTNQLVTVTNQLVTVTN 185
LP ++ ++ + S V ++ + + + + T + + +
Sbjct: 132 LNLPGLANGDSHTVVNSPTRSTVRTGVNNLLSKWNNTYAGEYGNTQAELQYDETMAYSMS 191
Query: 186 QLVTVTNQLVTVPLG-VGIALAAKYSGTKGVCFALY 220
QL T + I A SG K V +
Sbjct: 192 QLKTKFGTSFEKIAVPLDINFDAVNSGEKQVQIVNF 227
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 28.7 bits (65), Expect = 3.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 355 LVT---PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
LVT PE + + +V ++ D +V +TG
Sbjct: 36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITG 76
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 28.7 bits (65), Expect = 3.5
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 20/77 (25%)
Query: 319 SMSDPGTS---YRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
SMS+ + V R P NA +D A + A
Sbjct: 4 SMSEEMQPAVRVEKAGPVTTVILNR-P------HARNA----------VDGPTAAALLAA 46
Query: 376 IKKARADPEVGLDELTG 392
+ ADPE + L G
Sbjct: 47 FTEFDADPEASVAVLWG 63
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 28.3 bits (64), Expect = 3.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE+ + + E+ V++ DP G+ LTG
Sbjct: 27 PEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTG 61
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 28.3 bits (64), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE+L I E+ + A +K+ D EV LTG
Sbjct: 18 PEKLNAITGELLDALYAALKEGEEDREVRALLLTG 52
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 28.6 bits (64), Expect = 4.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE E+ V+ AR P+VG+ LTG
Sbjct: 75 PEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTG 109
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 28.3 bits (64), Expect = 4.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P+ L ++++V E+ + + DP++G +TG
Sbjct: 43 PQALNALNSQVMNEVTSAATELDDDPDIGAIIITG 77
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 28.3 bits (64), Expect = 4.2
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 16/75 (21%)
Query: 320 MSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVT--PEELKKIDTEVKAEIDAVIK 377
++ Y + R + +T E+L + + + V +
Sbjct: 2 LASLEARYPG---LA-FAWPRPGVL----------EITFRGEKLNAMPPALHRGLARVWR 47
Query: 378 KARADPEVGLDELTG 392
A V L G
Sbjct: 48 DLEAVEGVRAVLLRG 62
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 28.3 bits (64), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P+ L ++ ++AE+ + AD E+G +TG
Sbjct: 28 PDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 28.2 bits (64), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P+ L + ++ AEI A ++ + +V + LTG
Sbjct: 23 PDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTG 57
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 28.3 bits (64), Expect = 4.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P+ L + + E++ ++ DP VG LTG
Sbjct: 25 PKALNALCNGLIEELNQALETFEEDPAVGAIVLTG 59
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 28.4 bits (64), Expect = 5.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE + E+ E+DA +A D +V + L
Sbjct: 38 PEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRA 72
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 28.3 bits (64), Expect = 5.0
Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 37/135 (27%)
Query: 196 TVPLG------VGIALAAKYSGTKGV---CFALYGDGAANQGQVFEVYNIA---KLWNIP 243
T LG G+A KY + L GDG ++G V+E A KL N+
Sbjct: 120 TGSLGQGLGAACGMAYTGKY--FDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLV 177
Query: 244 CIFVCENNGYGMGTSSERASASVDYYTRGDYIPG---------IWVDGMDILAVREAARF 294
I + N G S + D I VDG + + +A
Sbjct: 178 AIL--DINRLGQ-------SDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQ 228
Query: 295 AVNH-----CRSDKG 304
A + ++ KG
Sbjct: 229 AKHQPTAIIAKTFKG 243
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 27.9 bits (63), Expect = 5.4
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
PE L + + + A DP+V + LTG
Sbjct: 24 PEALNAFNEALYDATAQALLDAADDPQVAVVLLTG 58
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 27.9 bits (63), Expect = 5.5
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P + + E+ + +A D VG +TG
Sbjct: 21 PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG 55
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 28.3 bits (64), Expect = 5.9
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 15/47 (31%)
Query: 215 VCFALYGDGAANQGQVFEVYNIAKLW-----NIPCIFVCENNGY-GM 255
+ GDG+AN Y+I+ LW NIP IFV NNG G
Sbjct: 423 IAVI--GDGSAN-------YSISALWTAAQYNIPTIFVIMNNGTYGA 460
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair,
TIM barrel, DNA DA endonuclease, hydrolase,
metal-binding; 1.60A {Geobacillus kaustophilus} PDB:
1xp3_A
Length = 303
Score = 27.9 bits (62), Expect = 6.0
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 290 EAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR-QTRDPISSLKD 348
A + V+H + + P +LET ++ P Y + EI +R Q+ D L +
Sbjct: 244 AALNYIVHHPQLEDIPKILETPYVGEDKNNKKPP---Y--KHEIAMLRAQSFDD--QLLE 296
Query: 349 KILNAS 354
KI +
Sbjct: 297 KINAGA 302
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 28.1 bits (62), Expect = 6.1
Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 40/219 (18%)
Query: 198 PLGVGIALA--AKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNI----PCIFVCENN 251
LG ++ A A + + GDG A G + + KL N + + N
Sbjct: 176 ELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLN 235
Query: 252 GYGMGTSSERASAS----VDYYTRGDYIPGIWVDGMD---ILAVREAARFAVNHC----- 299
GY + + A S D++ Y P +V G D +++
Sbjct: 236 GYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEIC 295
Query: 300 ------RSDKGP------ILLET-----ATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDP 342
++D ++ T G +++ + RD
Sbjct: 296 DIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQV-----PLASARDT 350
Query: 343 ISSLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARA 381
+ PEEL D +K ++ A + K
Sbjct: 351 EEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGEL 389
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.8
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 359 EELKKIDTEVK--AE-------IDAVIK 377
+ LKK+ +K A+ I A ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 27.6 bits (62), Expect = 7.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P + + E+ AR D +G+ LTG
Sbjct: 28 PHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTG 62
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 27.9 bits (61), Expect = 7.4
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 318 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELK-KIDTEVKAEIDAVI 376
HS D R +E+ I+ S + E L + +KA I A
Sbjct: 367 HSWGDGVAVLRFFNEVFRDSTQTPAITPQSQPAATNSSASVETLSFNLSGALKAGITAAK 426
Query: 377 KKARA 381
+K
Sbjct: 427 EKFDT 431
>3nqk_A Uncharacterized protein; structural genomics, unknown function,
joint center for STRU genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 2.61A {Bacteroides ovatus}
PDB: 3sot_A*
Length = 319
Score = 27.8 bits (61), Expect = 7.7
Identities = 19/91 (20%), Positives = 28/91 (30%)
Query: 106 DNVGPLIIDGNTFPDYVLDKYTLPTPNRSITYPTPSTMSDSQVDKAIDKYVKENEYSQDS 165
V L ID N +L+K+ LP + KA+ K V N YS
Sbjct: 105 SCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSYAYQSHPRKNYAKALLKVVPFNNYSGSY 164
Query: 166 DENMTNQLVTVTNQLVTVTNQLVTVTNQLVT 196
+ + + T T +V
Sbjct: 165 TASSMKVYTYINGKPDTNARTTDKRTGYVVD 195
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural
genomics, transporter, PSI-2, protein structure
initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Length = 232
Score = 27.6 bits (62), Expect = 8.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 361 LKKIDTEVKAEIDAVIKKARAD 382
L++ D E++ + DA I + D
Sbjct: 184 LRESDGELRGKFDAAITSMKED 205
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding
protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP:
c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A*
1hpb_P*
Length = 239
Score = 27.2 bits (61), Expect = 8.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 361 LKKIDTEVKAEIDAVIKKARAD 382
L+K DTE+KA D + + R D
Sbjct: 199 LRKDDTELKAAFDKALTELRQD 220
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 27.6 bits (62), Expect = 8.3
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 358 PEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
P+ E+ + AR D +G+ LTG
Sbjct: 46 PQVRNAFRPLTVKEMIQALADARYDDNIGVIILTG 80
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 27.3 bits (61), Expect = 10.0
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 23/65 (35%)
Query: 323 PGTSYRTRDEIQ----------EVRQTRDPISS--------LKDK----ILN-ASLVTPE 359
PG + R E+ E+ R P+SS LK+K +LN A
Sbjct: 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAA 66
Query: 360 ELKKI 364
++
Sbjct: 67 VTQQW 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,637,194
Number of extensions: 408256
Number of successful extensions: 1170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 78
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)