RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4881
(423 letters)
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 168 bits (427), Expect = 3e-49
Identities = 135/218 (61%), Positives = 162/218 (74%)
Query: 197 VPLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMG 256
VPLG GIALA KY+G VC LYGDGAANQGQ+FE YN+A LW +PCIF+CENN YGMG
Sbjct: 142 VPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMG 201
Query: 257 TSSERASASVDYYTRGDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 316
TS ERA+AS DYY RGD+IPG+ VDGMDIL VREA RFA +CRS KGPIL+E TYRY
Sbjct: 202 TSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 261
Query: 317 GHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAVI 376
GH MSDPG SYRTR+EIQEVR DPI LKD+++N++L + EELK+ID EV+ EI+
Sbjct: 262 GHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 321
Query: 377 KKARADPEVGLDELTGDIYAVPLETDIRGTTPFNSYPH 414
+ A ADPE L+EL IY+ ++RG + +
Sbjct: 322 QFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKS 359
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 126 bits (316), Expect = 6e-33
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 2/203 (0%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P VG A AAK + V +G+GAA++G +N A P IF C NNGY + T
Sbjct: 164 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 223
Query: 258 SSERASASVDYYTRGD--YIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ RG I I VDG D+ AV A + A ++ P L+E TYR
Sbjct: 224 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 283
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
S SD +++R+ DE+ + PIS L+ +L+ E+ K + + ++
Sbjct: 284 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 343
Query: 376 IKKARADPEVGLDELTGDIYAVP 398
++A P+ + L D+Y
Sbjct: 344 FEQAERKPKPNPNLLFSDVYQEM 366
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 122 bits (306), Expect = 9e-32
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 2/203 (0%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
G+AL K G K V GDG +QG +E N A + P IFV +NN + + T
Sbjct: 146 IQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAIST 205
Query: 258 SSERASASVDYYTRG--DYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
E+ + + + IPGI VDGMD LAV A + A + +GP L+ET +RY
Sbjct: 206 PVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRY 265
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
H+MS + E++ +DP+ + + L + EE + + K EI
Sbjct: 266 GPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEA 325
Query: 376 IKKARADPEVGLDELTGDIYAVP 398
IKKA P+ + +L ++
Sbjct: 326 IKKADETPKQKVTDLISIMFEEL 348
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 119 bits (298), Expect = 2e-30
Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 10/210 (4%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
VG A+A+ G + A GDGA + A ++ P I NN + + T
Sbjct: 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIST 247
Query: 258 SSERASASVDYYTR---GDYIPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 314
A + G I + VDG D +AV A+R+A R GP L+E TYR
Sbjct: 248 FQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307
Query: 315 YSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDA 374
HS SD + YR D+ DPI+ LK ++ + EE + E +A + A
Sbjct: 308 AGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA 366
Query: 375 VIKKA------RADPEVGLDELTGDIYAVP 398
K+A + D+Y
Sbjct: 367 AQKEAEQYGTLANGHIPSAASMFEDVYKEM 396
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 117 bits (294), Expect = 3e-30
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 3/203 (1%)
Query: 198 PLGVGIALAAKYSGTKGVCFALYGDGAANQGQVFEVYNIAKLWNIPCIFVCENNGYGMGT 257
P G A++ K T V +GDGA ++G + N A + P +F+ ENN Y +
Sbjct: 146 PPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISV 205
Query: 258 SSERASASVDYYTRGDY--IPGIWVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 315
+ S + IPG VDGMD+LA + AV R +GP L+E YRY
Sbjct: 206 DYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRY 265
Query: 316 SGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKKIDTEVKAEIDAV 375
HS +D + YR ++E+ R+ +DPI + + L E + + E++AE++
Sbjct: 266 GPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERG 324
Query: 376 IKKARADPEVGLDELTGDIYAVP 398
+K+A V + + D++A
Sbjct: 325 LKEAEEAGPVPPEWMFEDVFAEK 347
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.5 bits (61), Expect = 1.3
Identities = 7/67 (10%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 330 RDEIQEVRQTRDPISSLKDKILNASLVTPE----------ELKKIDTEVKAEIDAVIKKA 379
R I ++ + + + IL + + ++KK +V++++ ++ +
Sbjct: 16 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 75
Query: 380 RADPEVG 386
+ +
Sbjct: 76 EQEEGLN 82
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 27.9 bits (61), Expect = 2.0
Identities = 14/145 (9%), Positives = 35/145 (24%), Gaps = 11/145 (7%)
Query: 15 LLTFIPTCYPVEDTTEKVFGPLDYEN-------IPSEEFWGTEP----RRLINKYYSKHH 63
+ F+ P + + K+ L +P + P L
Sbjct: 19 FVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTP 78
Query: 64 DVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLIIDGNTFPDYVL 123
+ I H F + ++ + + V +++ +
Sbjct: 79 AQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAP 138
Query: 124 DKYTLPTPNRSITYPTPSTMSDSQV 148
+ N + + P D +
Sbjct: 139 FRQAALRHNIAPIFICPPNADDDLL 163
>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
[TaxId: 1392]}
Length = 297
Score = 27.8 bits (61), Expect = 2.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 290 EAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR-QTRDPISSLKD 348
+A V+H + P +LET Y G D Y + EI+ ++ T D L +
Sbjct: 240 KALHHIVHHPQLTHVPKILETP---YVGEDKKDKKPPY--KLEIEMLKNGTFDE--GLLE 292
Query: 349 KILN 352
KI
Sbjct: 293 KIKA 296
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17,
p17, MA) {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 101
Score = 26.4 bits (59), Expect = 2.6
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 287 AVREAARFAVNHCRSDKGPILLETA 311
A RE RFAVN P LLET+
Sbjct: 31 ASRELERFAVN-------PGLLETS 48
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 27.4 bits (59), Expect = 2.8
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 347 KDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTGDIYAVPLETDI 403
K + L PE + E+ + + ADP V LTG A D+
Sbjct: 6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADL 62
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 137
Score = 26.3 bits (58), Expect = 4.7
Identities = 5/43 (11%), Positives = 13/43 (30%)
Query: 156 VKENEYSQDSDENMTNQLVTVTNQLVTVTNQLVTVTNQLVTVP 198
V + E D + +++L + +V +
Sbjct: 48 VAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNI 90
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430
(rafl09-47-k03) {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 101
Score = 25.6 bits (56), Expect = 5.3
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 138 PTPSTMSDSQVDKAIDKYVKEN 159
T +S V I KY+ +
Sbjct: 30 DTSEMISRYDVSDTIAKYISKE 51
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 25.3 bits (55), Expect = 7.3
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 44 EEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKF 103
E+ G +P+ Y K+ +V + +C C K+ F DN Y ++
Sbjct: 52 EKVTGCDPKWDDYTYSWKNGTIVCG----GDDPCKKEVCECDKAAAICFRDNLKTYKKRY 107
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 345 SLKDKILNASLVTPEELKKIDTEVKAEIDAVIKKARADPEVGLDELTG 392
+ D + + PE E+ V+ AR P+VG+ LTG
Sbjct: 25 HVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTG 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,619,883
Number of extensions: 77259
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 16
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)