BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4884
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 54 LINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLT 112
LIN K + V + I D + A CRCW+SK FP CD SH HN+ DNVGPL
Sbjct: 18 LINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLI 77
Query: 113 LKR 115
LK+
Sbjct: 78 LKK 80
>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
Length = 76
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 TLKR 115
+K+
Sbjct: 70 IIKK 73
>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
Length = 77
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 52 RRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGP 110
+ +IN + K + + F + D G CRCW+SKKFPFCD +H HN+ DNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 69
Query: 111 LTLKR 115
L +K+
Sbjct: 70 LIIKK 74
>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
Length = 83
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 55 INKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTL 113
IN K+ D V D + + + CRCW+S FP CD SH HNK + DNVGPL L
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLL 80
Query: 114 KR 115
K+
Sbjct: 81 KK 82
>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
Length = 80
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 73
Query: 112 TLKR 115
+K+
Sbjct: 74 IIKK 77
>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
Length = 84
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 11 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 70
Query: 112 TLKR 115
+K+
Sbjct: 71 IIKK 74
>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
Length = 81
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 72
Query: 112 TLKR 115
+K+
Sbjct: 73 IIKK 76
>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
Length = 76
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 TLKR 115
+K+
Sbjct: 70 IIKK 73
>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel [2fe-
2s] Cluster Coordination
Length = 79
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 72
Query: 112 TLKR 115
+K+
Sbjct: 73 IIKK 76
>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
Length = 76
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 TLKR 115
+K+
Sbjct: 70 IIKK 73
>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
Length = 76
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F + CRCW+SKKFPFCD +H HN+ DNVGPL
Sbjct: 10 KAMINLHIQKDNPKIVHAFDGEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69
Query: 112 TLKR 115
+K+
Sbjct: 70 IIKK 73
>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
Length = 83
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 55 INKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTL 113
IN K+ D V D + + + CRCW+S FP CD S HNK + DNVGPL L
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLL 80
Query: 114 KR 115
K+
Sbjct: 81 KK 82
>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
Length = 79
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 52 RRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPL 111
+ +IN + K + + F ++ CRCW+SKKFPFCD + HN+ DNVGPL
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPL 73
Query: 112 TLKR 115
+K+
Sbjct: 74 IIKK 77
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
E TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 30 EVSATELMNILNKVVTRHPDLKTDGFGIDTSRSMVAVMDSDTTGKLGFEEFKYLWNN 86
>pdb|3TBN|A Chain A, Crystal Structure Of A Miner2 Homolog: A Type 6 Cdgsh
Iron-Sulfur Protein
Length = 87
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 82 CRCWKSKKFPFCDNSHK 98
C C +SK PFCD SHK
Sbjct: 33 CACGRSKAQPFCDGSHK 49
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|4H0Q|A Chain A, Crystal Structure Of A Acidic Pla2 From Trimeresurus
Stejnegeri Venom
pdb|4H0Q|B Chain B, Crystal Structure Of A Acidic Pla2 From Trimeresurus
Stejnegeri Venom
Length = 121
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 48 GTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKF 103
G +P+ +Y S + D+V + T+ IC C K+ F DN Y NK+
Sbjct: 56 GCDPKEDFYRYSSNNGDIVCEA----NNPCTKEICECDKAAAICFRDNKDTYDNKY 107
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With
Gdp
Length = 142
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3TBM|A Chain A, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein.
pdb|3TBM|B Chain B, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein
Length = 69
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 81 ICRCWKSKKFPFCDNSHK 98
+CRC S PFCD SHK
Sbjct: 43 LCRCGHSLNKPFCDGSHK 60
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Ndk, The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Ndk, The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 40 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 75
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 31 KVIGPLDYEN--IPSEEFWGTEPRRLINKYYSKHHD 64
+++G ++ +N I S +FW PR LI ++Y +H +
Sbjct: 25 EIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDT 74
E TE ++NK ++H D+ TD F IDT
Sbjct: 746 EVSATELMNILNKVVTRHPDLKTDGFGIDT 775
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
E TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 19 EVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 75
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
E TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 26 EVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 82
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
E TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 19 EVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 75
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
E TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 30 EVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 86
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 45 EFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHN 101
E TE ++NK ++H D+ TD F IDT A+ + K F + + ++N
Sbjct: 30 EVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 86
>pdb|3SGD|H Chain H, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGD|J Chain J, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGE|H Chain H, Crystal Structure Of Mab 17.2 In Complex With R13
Peptide
pdb|3SGE|J Chain J, Crystal Structure Of Mab 17.2 In Complex With R13
Peptide
Length = 217
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 47 WGTEPRRLINKYYSKHHDVVTDRFTID 73
W R IN Y + + D V DRFTI
Sbjct: 47 WVARIRSKINNYSTYYADSVKDRFTIS 73
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 29 TEKVIGP-------LDYENIPSEEF-------WGTEPRRLINKYYSKHHDVVTDRFT 71
+ ++ GP LDYEN+PS F G + I KY ++ V +FT
Sbjct: 341 SNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFT 397
>pdb|1MHZ|D Chain D, Methane Monooxygenase Hydroxylase
pdb|1MHY|D Chain D, Methane Monooxygenase Hydroxylase
Length = 521
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 54 LINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCD 94
IN YYSKH+ D + T AI WK K F D
Sbjct: 148 FINHYYSKHYH---DPAGHNDARRTRAIGPLWKGMKRVFAD 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,934,144
Number of Sequences: 62578
Number of extensions: 156105
Number of successful extensions: 307
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 39
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)