Query psy4884
Match_columns 116
No_of_seqs 162 out of 545
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:16:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ezf_A Mitoneet, CDGSH iron-su 100.0 2.3E-31 7.9E-36 183.2 2.8 70 46-115 2-74 (77)
2 3fnv_A CDGSH iron sulfur domai 100.0 3.1E-31 1.1E-35 184.7 2.3 71 45-115 6-80 (83)
3 3s2r_A AT5G51720/MIO24_14; red 100.0 2.8E-30 9.6E-35 179.8 1.7 63 53-115 19-82 (83)
4 3ew0_A Mitoneet, CDGSH iron su 99.9 9.9E-28 3.4E-32 165.8 2.9 63 52-115 14-77 (80)
5 3tbo_A Zinc finger, CDGSH-type 99.5 3.4E-15 1.2E-19 98.5 2.0 42 58-104 6-47 (60)
6 3tbm_A Putative uncharacterize 99.5 2.4E-14 8.1E-19 96.3 2.8 49 55-103 8-65 (69)
7 3tbn_A Putative uncharacterize 99.4 9.8E-14 3.3E-18 97.1 5.0 72 16-100 15-87 (87)
8 3tbn_A Putative uncharacterize 99.3 7.2E-13 2.5E-17 92.7 4.2 50 55-114 10-59 (87)
9 2j5h_A Teratocarcinoma-derived 51.3 3.3 0.00011 25.2 0.1 19 77-95 16-41 (41)
10 1yop_A KTI11P; zinc finger, me 24.8 27 0.00093 23.4 1.2 7 79-85 23-29 (83)
11 2jr7_A DPH3 homolog; DESR1, CS 23.2 25 0.00086 24.0 0.8 9 79-87 23-31 (89)
12 3bpo_A Interleukin 13; IL4, IL 23.0 24 0.00081 25.9 0.7 12 86-97 22-33 (127)
13 1wge_A Hypothetical protein 26 20.2 31 0.0011 23.1 0.8 11 77-87 27-38 (83)
No 1
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.96 E-value=2.3e-31 Score=183.19 Aligned_cols=70 Identities=41% Similarity=0.845 Sum_probs=63.6
Q ss_pred cccCCC--ccccccccccCCceeeeEEee-cCCCceEEEEeeCCCCCCccccccCccCccCCCCccCeeeeeC
Q psy4884 46 FWGTEP--RRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTLKR 115 (116)
Q Consensus 46 ~~~~~~--~~~vN~~I~k~~pKvV~~~~i-d~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~etgdnvgPlii~~ 115 (116)
|+.+++ +++||..|++++||||+.|++ ++++.+++|||||+|+++|||||||.++|+++|||||||++++
T Consensus 2 ~~~k~~~~~~~vN~~i~kd~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~ 74 (77)
T 4ezf_A 2 FYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKK 74 (77)
T ss_dssp CCSCCCSCTTCSCSSSCTTSSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEEC
T ss_pred ccccccCcccccccceecCCCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEe
Confidence 455554 899999999999999999999 6663499999999999999999999999999999999999986
No 2
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.1e-31 Score=184.67 Aligned_cols=71 Identities=44% Similarity=0.800 Sum_probs=60.6
Q ss_pred ccccCCC---ccccccccccCCceeeeEEee-cCCCceEEEEeeCCCCCCccccccCccCccCCCCccCeeeeeC
Q psy4884 45 EFWGTEP---RRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTLKR 115 (116)
Q Consensus 45 ~~~~~~~---~~~vN~~I~k~~pKvV~~~~i-d~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~etgdnvgPlii~~ 115 (116)
.|+++.+ .++||..|++++|||||.+++ +++.++++|||||+|+++|||||||.++++++|||||||+|++
T Consensus 6 ~~~~~~~~~k~~~vN~~I~k~~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~ 80 (83)
T 3fnv_A 6 PFLPKKKQQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKK 80 (83)
T ss_dssp ----------CCCSCSSSCTTSSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEEC
T ss_pred hhccccccCcccccCcceecCCCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEe
Confidence 4554443 588999999999999999999 6665889999999999999999999999999999999999986
No 3
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.96 E-value=2.8e-30 Score=179.81 Aligned_cols=63 Identities=43% Similarity=0.754 Sum_probs=59.6
Q ss_pred cccccccccCCceeeeEEee-cCCCceEEEEeeCCCCCCccccccCccCccCCCCccCeeeeeC
Q psy4884 53 RLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTLKR 115 (116)
Q Consensus 53 ~~vN~~I~k~~pKvV~~~~i-d~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~etgdnvgPlii~~ 115 (116)
+++|+.|+|+++|+||.+++ |+++.+++|||||+|+++|||||||.++|+++||||||++|+|
T Consensus 19 ~~vN~~I~K~~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk 82 (83)
T 3s2r_A 19 GGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKK 82 (83)
T ss_dssp -CCCSSTTTTSSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEEC
T ss_pred CccCchhhcCCCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEec
Confidence 68999999999999999999 6665799999999999999999999999999999999999997
No 4
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.94 E-value=9.9e-28 Score=165.77 Aligned_cols=63 Identities=43% Similarity=0.904 Sum_probs=59.7
Q ss_pred ccccccccccCCceeeeEEeec-CCCceEEEEeeCCCCCCccccccCccCccCCCCccCeeeeeC
Q psy4884 52 RRLINKYYSKHHDVVTDRFTID-TGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTLKR 115 (116)
Q Consensus 52 ~~~vN~~I~k~~pKvV~~~~id-~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~etgdnvgPlii~~ 115 (116)
++++|..|++++|++|+.++++ ++ ++++|||||+|+|+|||||||.++++|+|||||||+|++
T Consensus 14 ~~~vni~I~k~gP~~V~~~~led~~-~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~ 77 (80)
T 3ew0_A 14 KAMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKK 77 (80)
T ss_dssp CCCSCSSSCTTSSSEEEEECGGGCC-SEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEEC
T ss_pred CCccCeEEeCCCCEEEEeeccccCC-CeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEe
Confidence 7889999999999999998885 55 899999999999999999999999999999999999986
No 5
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.51 E-value=3.4e-15 Score=98.49 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=32.2
Q ss_pred ccccCCceeeeEEeecCCCceEEEEeeCCCCCCccccccCccCccCC
Q psy4884 58 YYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFH 104 (116)
Q Consensus 58 ~I~k~~pKvV~~~~id~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~et 104 (116)
.+..++|..|+ ++ +++++|||||+|+|+|||||||+..+++.
T Consensus 6 ~v~~ngP~~v~---~e--~~~~~lC~CG~S~n~PFCDGSHk~~~f~~ 47 (60)
T 3tbo_A 6 RAIENGPYEVK---IG--GRAIYLCRCGHSGSKPHCDGTHAKVGFKA 47 (60)
T ss_dssp EECTTSCEEEE---C-----CEEECCSSCCTTTTBCCSHHHHHTCCC
T ss_pred EEeCCCCEEEE---EC--CcEEEEEECCCCCCCCccCCcCCCCcccc
Confidence 45567888775 33 36679999999999999999999877753
No 6
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.45 E-value=2.4e-14 Score=96.29 Aligned_cols=49 Identities=27% Similarity=0.336 Sum_probs=36.3
Q ss_pred cccccccCCceeeeE-Eee--------cCCCceEEEEeeCCCCCCccccccCccCccC
Q psy4884 55 INKYYSKHHDVVTDR-FTI--------DTGIHTEAICRCWKSKKFPFCDNSHKYHNKF 103 (116)
Q Consensus 55 vN~~I~k~~pKvV~~-~~i--------d~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~e 103 (116)
+...+..++|..|.. +++ +..+.+++|||||+|+|+|||||||....++
T Consensus 8 ~~I~v~~nGPl~V~G~v~i~~~dG~~~~~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~ 65 (69)
T 3tbm_A 8 VVITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHKRVEFD 65 (69)
T ss_dssp CEEEECTTSCEEEESSCEEEESSCCEECCBTTEEEECCSSCCSSTTBCCSHHHHTTCC
T ss_pred eEEEEeCCCCEEEECCCeEECCCCCEEeeCCCEEEEeeCCCCCCCCccCCCcCCCCcc
Confidence 335566777777763 333 1124679999999999999999999988775
No 7
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.43 E-value=9.8e-14 Score=97.13 Aligned_cols=72 Identities=25% Similarity=0.281 Sum_probs=53.3
Q ss_pred hhccCceeecccc-ceeeeeeeeeeccCCCccccCCCccccccccccCCceeeeEEeecCCCceEEEEeeCCCCCCcccc
Q psy4884 16 LSFIPTCYPVEDT-TEKVIGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCD 94 (116)
Q Consensus 16 l~~~p~~~~~~~a-~~a~~gy~~yk~i~~~~~~~~~~~~~vN~~I~k~~pKvV~~~~id~~~~~~~lCrCg~Sk~~PfCD 94 (116)
+..-|.-+.+|++ +.++......++-| |.+++++.- + -..-.|.++.+ +++|+|+|++|+|.||||
T Consensus 15 ~~~~P~~v~le~g~~~~~C~CG~S~~~P---fCDGSH~~~--------~-f~P~~f~~e~~-~~~~lC~CK~T~n~PfCD 81 (87)
T 3tbn_A 15 AQKAPYPVTVEAGKTYHWCACGRSKAQP---FCDGSHKGT--------G-LAPVAYTPDKA-GTAYFCGCKASKAPPLCD 81 (87)
T ss_dssp SCSSCEEEEECTTCCEEECSSSCCSSTT---BCCSTTTTT--------T-CCCEEECCSSC-EEEEECSSSCCSSTTBCC
T ss_pred ccCCCEEEEeCCCCEEEEeeCCCCCCCC---CcCCccccC--------C-ccceEEEECCC-cEEEEecCCCCCCCCccC
Confidence 4567888888888 56777777777444 999977331 2 22234566666 889999999999999999
Q ss_pred ccCccC
Q psy4884 95 NSHKYH 100 (116)
Q Consensus 95 GSH~~~ 100 (116)
|||+++
T Consensus 82 GsH~~L 87 (87)
T 3tbn_A 82 GTHKTL 87 (87)
T ss_dssp SGGGTC
T ss_pred CcCCcC
Confidence 999863
No 8
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.33 E-value=7.2e-13 Score=92.72 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=37.3
Q ss_pred cccccccCCceeeeEEeecCCCceEEEEeeCCCCCCccccccCccCccCCCCccCeeeee
Q psy4884 55 INKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGPLTLK 114 (116)
Q Consensus 55 vN~~I~k~~pKvV~~~~id~~~~~~~lCrCg~Sk~~PfCDGSH~~~~~etgdnvgPlii~ 114 (116)
..+.|...+|.+++ ++.+ ++++||+||+|+|+|||||||+..+ ..|+.++
T Consensus 10 ~~~~~~~~~P~~v~---le~g-~~~~~C~CG~S~~~PfCDGSH~~~~------f~P~~f~ 59 (87)
T 3tbn_A 10 TDPVIAQKAPYPVT---VEAG-KTYHWCACGRSKAQPFCDGSHKGTG------LAPVAYT 59 (87)
T ss_dssp TSCCCSCSSCEEEE---ECTT-CCEEECSSSCCSSTTBCCSTTTTTT------CCCEEEC
T ss_pred CCcccccCCCEEEE---eCCC-CEEEEeeCCCCCCCCCcCCccccCC------ccceEEE
Confidence 34566667776554 4544 7899999999999999999998753 4566553
No 9
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=51.34 E-value=3.3 Score=25.23 Aligned_cols=19 Identities=37% Similarity=1.079 Sum_probs=13.6
Q ss_pred ceEEEEeeCCC-------CCCccccc
Q psy4884 77 HTEAICRCWKS-------KKFPFCDN 95 (116)
Q Consensus 77 ~~~~lCrCg~S-------k~~PfCDG 95 (116)
+.-++||||.. ...|=|||
T Consensus 16 k~C~LCRC~~G~LhCfp~~~~~~CD~ 41 (41)
T 2j5h_A 16 KKCSLCRCWHGQLHCLPQTFLPGCDX 41 (41)
T ss_dssp CCCCCCCCCSSSCCSCCSSSSTTCC-
T ss_pred cCceEEEeecCceEEcccccCCCCCC
Confidence 45789999964 56777887
No 10
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=24.77 E-value=27 Score=23.40 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=5.5
Q ss_pred EEEEeeC
Q psy4884 79 EAICRCW 85 (116)
Q Consensus 79 ~~lCrCg 85 (116)
+|-||||
T Consensus 23 ~ypCrCG 29 (83)
T 1yop_A 23 TYPCPCG 29 (83)
T ss_dssp EEEETTT
T ss_pred EEeCCCC
Confidence 4569999
No 11
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=23.24 E-value=25 Score=23.97 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=6.3
Q ss_pred EEEEeeCCC
Q psy4884 79 EAICRCWKS 87 (116)
Q Consensus 79 ~~lCrCg~S 87 (116)
+|-||||..
T Consensus 23 ~ypCrCGd~ 31 (89)
T 2jr7_A 23 FYPCPCGDN 31 (89)
T ss_dssp EEECTTSSE
T ss_pred EEcCCCCCE
Confidence 455999854
No 12
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=23.05 E-value=24 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=7.7
Q ss_pred CCCCCccccccC
Q psy4884 86 KSKKFPFCDNSH 97 (116)
Q Consensus 86 ~Sk~~PfCDGSH 97 (116)
+..+.|+|+||=
T Consensus 22 q~qK~~LCNGSM 33 (127)
T 3bpo_A 22 QNQKAPLCNGSM 33 (127)
T ss_dssp C---CCSGGGCC
T ss_pred ccccCCccCCce
Confidence 456789999986
No 13
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.17 E-value=31 Score=23.13 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=7.1
Q ss_pred ceE-EEEeeCCC
Q psy4884 77 HTE-AICRCWKS 87 (116)
Q Consensus 77 ~~~-~lCrCg~S 87 (116)
..+ |-||||..
T Consensus 27 ~~y~y~CrCGd~ 38 (83)
T 1wge_A 27 ETYFYPCPCGDN 38 (83)
T ss_dssp TEEEECCSSSSC
T ss_pred CEEEEeCCCCCE
Confidence 444 44999864
Done!