Query psy4884
Match_columns 116
No_of_seqs 162 out of 545
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 20:17:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4884.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4884hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yoba1 c.23.5.1 (A:1-179) Fla 26.6 18 0.0013 24.5 2.5 25 73-97 85-111 (179)
2 d2j5ha1 g.3.11.7 (A:1-39) Crip 20.6 6.3 0.00046 22.3 -0.9 12 77-88 15-26 (39)
3 d1d0qa_ g.41.3.2 (A:) Zinc-bin 20.3 16 0.0011 22.8 1.0 17 77-99 32-48 (102)
4 d1dkca_ g.3.4.2 (A:) Antifunga 20.2 21 0.0015 19.8 1.4 15 83-97 9-23 (38)
5 d1v54g_ f.23.2.1 (G:) Mitochon 18.3 23 0.0017 22.4 1.4 16 85-100 55-70 (84)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 18.3 17 0.0012 21.1 0.7 25 14-38 1-25 (89)
7 d1ag9a_ c.23.5.1 (A:) Flavodox 16.2 41 0.003 22.3 2.5 26 73-98 76-103 (175)
8 d1bwwa_ b.1.1.1 (A:) Immunoglo 11.8 53 0.0038 19.6 1.8 23 74-96 82-104 (109)
9 d1cd0a_ b.1.1.1 (A:) Immunoglo 11.7 56 0.0041 19.4 1.9 22 75-96 84-105 (111)
10 d2fcba2 b.1.1.4 (A:91-178) Fc 11.5 38 0.0028 19.3 1.0 25 14-38 1-25 (88)
No 1
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=26.58 E-value=18 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.5
Q ss_pred cCCCceEEEEeeCCCCCCc--cccccC
Q psy4884 73 DTGIHTEAICRCWKSKKFP--FCDNSH 97 (116)
Q Consensus 73 d~~~~~~~lCrCg~Sk~~P--fCDGSH 97 (116)
++++.+++++.+|-|...+ |||+..
T Consensus 85 ~l~g~~~avfGlGDs~~~~~~Fc~a~~ 111 (179)
T d1yoba1 85 DFSGKTVALFGLGDQVGYPENYLDALG 111 (179)
T ss_dssp CCTTCEEEEEEECCTTTCTTTTTHHHH
T ss_pred ccCCcEEEEEEecCCcccchhHHHHHH
Confidence 4556899999999998654 999974
No 2
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.57 E-value=6.3 Score=22.29 Aligned_cols=12 Identities=33% Similarity=1.276 Sum_probs=9.6
Q ss_pred ceEEEEeeCCCC
Q psy4884 77 HTEAICRCWKSK 88 (116)
Q Consensus 77 ~~~~lCrCg~Sk 88 (116)
++-++||||...
T Consensus 15 k~CslCrC~~G~ 26 (39)
T d2j5ha1 15 KKCSLCRCWHGQ 26 (39)
T ss_dssp CCCCCCCCCSSS
T ss_pred ccceEEEeccCc
Confidence 567999999864
No 3
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.28 E-value=16 Score=22.78 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=12.0
Q ss_pred ceEEEEeeCCCCCCccccccCcc
Q psy4884 77 HTEAICRCWKSKKFPFCDNSHKY 99 (116)
Q Consensus 77 ~~~~lCrCg~Sk~~PfCDGSH~~ 99 (116)
+..|+|+| |||+..|..
T Consensus 32 G~~~~~~C------Pfh~d~~~S 48 (102)
T d1d0qa_ 32 GRNYFGLC------PFHGEKTPS 48 (102)
T ss_dssp TTEEEECC------SSSCCSSCC
T ss_pred CCceEEec------cccCCCCcc
Confidence 44677888 888877644
No 4
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=20.22 E-value=21 Score=19.79 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=12.5
Q ss_pred eeCCCCCCccccccC
Q psy4884 83 RCWKSKKFPFCDNSH 97 (116)
Q Consensus 83 rCg~Sk~~PfCDGSH 97 (116)
||-.|...|||=.+-
T Consensus 9 rcn~~~gppyccs~~ 23 (38)
T d1dkca_ 9 RCNASAGPPYCCSSY 23 (38)
T ss_dssp EECTTSCCCCCSSSE
T ss_pred eecccCCCCceechh
Confidence 799999999996543
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.27 E-value=23 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=13.0
Q ss_pred CCCCCCccccccCccC
Q psy4884 85 WKSKKFPFCDNSHKYH 100 (116)
Q Consensus 85 g~Sk~~PfCDGSH~~~ 100 (116)
-|+|.+|+=||-|...
T Consensus 55 IR~K~FpWGDG~~tLF 70 (84)
T d1v54g_ 55 IRTKPFSWGDGNHTFF 70 (84)
T ss_dssp CCSSCCSSTTSSSCTT
T ss_pred hhccccCCCCCCcccc
Confidence 3789999999988653
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.26 E-value=17 Score=21.10 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=19.5
Q ss_pred hhhhccCceeeccccceeeeeeeee
Q psy4884 14 DLLSFIPTCYPVEDTTEKVIGPLDY 38 (116)
Q Consensus 14 ~~l~~~p~~~~~~~a~~a~~gy~~y 38 (116)
|||-|-|+...|..+-...+.+.+.
T Consensus 1 d~Lilq~p~~~V~eG~~v~L~C~~~ 25 (89)
T d1f2qa2 1 DWLLLQASAEVVMEGQPLFLRCHGW 25 (89)
T ss_dssp SSEEEEESCSEEETTSCEEEEEEEG
T ss_pred CeEEEeCCcCeEeCCCEEEEEEEec
Confidence 8999998888787777777777553
No 7
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Probab=16.22 E-value=41 Score=22.31 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=20.2
Q ss_pred cCCCceEEEEeeCCCCCC--ccccccCc
Q psy4884 73 DTGIHTEAICRCWKSKKF--PFCDNSHK 98 (116)
Q Consensus 73 d~~~~~~~lCrCg~Sk~~--PfCDGSH~ 98 (116)
++.+.+++++.||-|... .|||+...
T Consensus 76 ~l~~~~~avfglGd~~~~~~~F~~a~~~ 103 (175)
T d1ag9a_ 76 DFNGKLVALFGCGDQEDYAEYFCDALGT 103 (175)
T ss_dssp CCTTCEEEEEEECCTTTTTTSTTHHHHH
T ss_pred ccCCCcEEEEEccCCchhhhHHHHHHHH
Confidence 455689999999988764 59998653
No 8
>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
Probab=11.83 E-value=53 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=15.7
Q ss_pred CCCceEEEEeeCCCCCCcccccc
Q psy4884 74 TGIHTEAICRCWKSKKFPFCDNS 96 (116)
Q Consensus 74 ~~~~~~~lCrCg~Sk~~PfCDGS 96 (116)
.++.-.|||..|.+...-|=.|+
T Consensus 82 ~~Dsa~YyCA~~~~~~~~FG~GT 104 (109)
T d1bwwa_ 82 PEDIATYYCQQYQSLPYTFGQGT 104 (109)
T ss_dssp GGGCEEEEEEECSSSSCEECCCE
T ss_pred eCcCceEEEeecCCCccEECCCE
Confidence 34577899999987665554443
No 9
>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
Probab=11.67 E-value=56 Score=19.42 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCceEEEEeeCCCCCCcccccc
Q psy4884 75 GIHTEAICRCWKSKKFPFCDNS 96 (116)
Q Consensus 75 ~~~~~~lCrCg~Sk~~PfCDGS 96 (116)
++.-.|||.+|.+...-|=+|+
T Consensus 84 ~Dsa~YyCA~~~~~~~~FG~GT 105 (111)
T d1cd0a_ 84 EDEADYYCQSYDARNVVFGGGT 105 (111)
T ss_dssp GGCEEEEEEEEETTEEEEBCCE
T ss_pred ccCcEEEEeeccCCCCEECCCe
Confidence 3567899999877665554444
No 10
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}
Probab=11.49 E-value=38 Score=19.32 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=17.0
Q ss_pred hhhhccCceeeccccceeeeeeeee
Q psy4884 14 DLLSFIPTCYPVEDTTEKVIGPLDY 38 (116)
Q Consensus 14 ~~l~~~p~~~~~~~a~~a~~gy~~y 38 (116)
|||-|-|+...+..+-...+-+-+.
T Consensus 1 dwLilq~p~~~v~eG~~v~L~C~~~ 25 (88)
T d2fcba2 1 EWLVLQTPHLEFQEGETIVLRCHSW 25 (88)
T ss_dssp SSEEEECSCSEECTTCCEEEEEEEG
T ss_pred CeEEEeCCCCeEecCCeEEEEEEec
Confidence 8999988777676565555555443
Done!