RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4884
(116 letters)
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein;
1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Length = 83
Score = 64.4 bits (156), Expect = 3e-15
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 50 EPRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNV 108
E IN K+ D V D + + + CRCW+S FP CD S HNK + DNV
Sbjct: 16 EGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNV 75
Query: 109 GPLTLKR 115
GPL LK+
Sbjct: 76 GPLLLKK 82
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 64.0 bits (155), Expect = 5e-15
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 49 TEPRRLINKYYSKHHDVVTDRFTI-DTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDN 107
+ LIN K + V + I D + A CRCW+SK FP CD SH HN+ DN
Sbjct: 13 QQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDN 72
Query: 108 VGPLTLKR 115
VGPL LK+
Sbjct: 73 VGPLILKK 80
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1;
mitochondrial outer membrane, 2Fe-2S proteins, isotopic
LABE highyield expression; 1.40A {Homo sapiens} PDB:
2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Length = 80
Score = 62.8 bits (152), Expect = 1e-14
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 51 PRRLINKYYSKHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDNVGP 110
+ +IN + K + + F ++ CRCW+SKKFPFCD +H HN+ DNVGP
Sbjct: 13 NKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 72
Query: 111 LTLKR 115
L +K+
Sbjct: 73 LIIKK 77
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal
binding protein; HET: 2PE TLA; 1.80A {Ralstonia
solanacearum}
Length = 69
Score = 42.5 bits (100), Expect = 7e-07
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 65 VVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHK 98
V + +CRC S PFCD SHK
Sbjct: 27 VTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHK 60
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal
binding protein; 1.50A {Pyrobaculum calidifontis}
Length = 60
Score = 38.8 bits (90), Expect = 2e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 70 FTIDTGIHTEAICRCWKSKKFPFCDNSHK 98
+ + G +CRC S P CD +H
Sbjct: 13 YEVKIGGRAIYLCRCGHSGSKPHCDGTHA 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-05
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 32/127 (25%)
Query: 12 CLDLLS-FIPT------CYPVEDTTEKVIGPLDYENI---PSEEFWGTEPRRLINKYYSK 61
D+LS F C V+D + ++ + ++I + RL SK
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---SGTLRLFWTLLSK 74
Query: 62 HHDVVTDRFTID----------TGIHTEAICRCWKSKKFPFCDNSHKYHNKFHKDN--VG 109
++V +F + + I TE ++ + + ++ + DN
Sbjct: 75 QEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFA 127
Query: 110 PLTLKRP 116
+ R
Sbjct: 128 KYNVSRL 134
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2,
metal binding protein; 1.15A {Magnetospirillum
magneticum}
Length = 87
Score = 34.3 bits (78), Expect = 0.001
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 61 KHHDVVTDRFTIDTGIHTEAICRCWKSKKFPFCDNSHK 98
K + +T D T C C SK P CD +HK
Sbjct: 49 KGTGLAPVAYTPDKA-GTAYFCGCKASKAPPLCDGTHK 85
Score = 28.1 bits (62), Expect = 0.30
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 80 AICRCWKSKKFPFCDNSHK 98
C C +SK PFCD SHK
Sbjct: 31 HWCACGRSKAQPFCDGSHK 49
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 26.3 bits (57), Expect = 3.1
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 18 FIPTCYPVEDTTEKVIGPLDYENIPSEEFWGTEPRRLINKYYSKHHDVVTDRFTI 72
P YP + IG +PSE+ + + K+ +R +
Sbjct: 364 LYPRLYPRIREILEQIGASGLITLPSEKDFKGPLGPFLEKFLQGAALEAKERVAL 418
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 25.7 bits (57), Expect = 4.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 30 EKVIGPLDYENIPSEEFWGTEP 51
++V+ L I E G +P
Sbjct: 62 DQVVDSLKKHGIEWVEVSGVKP 83
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid
biosynthesis, cholesterol biosynthesis, mitochondrion,
phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB:
2wya_A*
Length = 460
Score = 25.2 bits (54), Expect = 6.5
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 51 PRRLINKYYSKHHDVVTDRFTIDTGIHTEAIC 82
+ + K+++V ++T+ G C
Sbjct: 17 AQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFC 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.467
Gapped
Lambda K H
0.267 0.0801 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,832,338
Number of extensions: 97313
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 16
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)