Query psy4885
Match_columns 187
No_of_seqs 84 out of 101
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 20:17:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4177|consensus 99.9 2.3E-24 4.9E-29 215.9 0.2 153 1-187 792-969 (1143)
2 smart00218 ZU5 Domain present 99.4 3.1E-13 6.6E-18 104.2 5.1 50 1-50 55-104 (104)
3 PF00791 ZU5: ZU5 domain; Int 99.1 1.8E-10 4E-15 87.5 5.4 48 2-50 56-103 (103)
4 PF10461 Peptidase_S68: Peptid 97.6 3.4E-05 7.4E-10 49.2 2.1 18 88-106 18-35 (35)
5 PF00791 ZU5: ZU5 domain; Int 96.8 0.00063 1.4E-08 51.7 1.7 36 131-166 54-89 (103)
6 smart00218 ZU5 Domain present 94.8 0.048 1E-06 42.3 4.4 35 132-166 55-89 (104)
7 PF02012 BNR: BNR/Asp-box repe 61.6 5.9 0.00013 19.9 1.3 11 44-54 2-12 (12)
8 PF10738 Lpp-LpqN: Probable li 41.3 53 0.0012 27.4 4.6 36 127-168 9-44 (175)
9 PF06762 LMF1: Lipase maturati 40.5 17 0.00036 33.9 1.6 81 31-144 248-336 (384)
10 COG1762 PtsN Phosphotransferas 27.6 54 0.0012 25.6 2.5 40 12-55 51-90 (152)
11 PF00548 Peptidase_C3: 3C cyst 24.9 2.6E+02 0.0056 22.8 6.1 67 34-119 67-133 (172)
12 smart00136 LamNT Laminin N-ter 23.4 66 0.0014 28.0 2.4 29 30-60 106-134 (238)
13 PRK09665 PTS system galactitol 20.4 81 0.0018 24.8 2.2 31 24-54 56-86 (150)
No 1
>KOG4177|consensus
Probab=99.88 E-value=2.3e-24 Score=215.94 Aligned_cols=153 Identities=65% Similarity=1.049 Sum_probs=144.2
Q ss_pred CCcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccch
Q psy4885 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQL 80 (187)
Q Consensus 1 ~e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ 80 (187)
++.|+++++.++.+|++++|++ +|||++.+.++||++|+|| |++|....++..+.++|+ +.
T Consensus 792 ~~~e~~a~~~~~~~p~~~~~l~-----~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~~~~~~~~l~---------~~ 852 (1143)
T KOG4177|consen 792 AEREGLASRLLAMAPDGAAFLG-----PPHFASLLKDERELVVLRS-----WKEHDCNYGEDKLYEILN---------SA 852 (1143)
T ss_pred ccccccchhhhccCCchhhhcC-----chhHHHHhcCcceEEEeec-----HhhhhhccCcchhhhccc---------hH
Confidence 4789999999999999999999 8999999999999999999 999999999998887775 56
Q ss_pred hhcccccEEEEEeCCCCeEEEEEeeeeeeeeecCCCCee-------------------------eeecCHHHHHHHhCCC
Q psy4885 81 EDLHTSRIVRILTVDFPQYFAVVSRLRQEIHAVGPEGGV-------------------------AQPIPSELVTKLLGNR 135 (187)
Q Consensus 81 ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~~V~peGg~-------------------------vqpv~~~~v~~l~g~~ 135 (187)
+++.+++++|+++.| |.+|+...+|+|||. +|||+.++++++.||+
T Consensus 853 ~~l~~~~~~~~~~~~---------~v~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 923 (1143)
T KOG4177|consen 853 EELDTKRICRIITSD---------RVRQEYLASGPEGGVSTLVPLVQAVFPENALTKRIRVSLQAQPVPLEVVTKLLGNK 923 (1143)
T ss_pred HHhcccchhhHHhhh---------hhccccccccCCCCcCcccceehhhcCCCcchHHHHHHHhcccccHHHHHHhcCCc
Confidence 789999999999888 999999999999998 8999999999999999
Q ss_pred ceecceEEEecCCccCCCCeEEEecCCCCCCcCccccCCCCCCceeEeeecC
Q psy4885 136 VAVSPIVSIEPRRRKFHKPITLTIPLPQAANKGMINQYSGNAPTLRLLCSIT 187 (187)
Q Consensus 136 ~~~SPivtleprrrkFhkPItltiPlP~~~~~~~~~~~~~~~~~lrLLcsit 187 (187)
+++|||+++|||++|||+|||+.+ .|... |.++|++++||||||++
T Consensus 924 ~~~~~i~~~e~r~~~~~~~~~l~~-~~~~~-----~~~~~~t~~l~ll~~~~ 969 (1143)
T KOG4177|consen 924 ATFSPIVTVEPRRRKFHKPITLRI-APGSN-----NAYSGDTPTLRLLCSIT 969 (1143)
T ss_pred ccccceeeecchHHHhhhhhhhcc-ccccC-----cccCCCCchhhhhhccc
Confidence 999999999999999999999999 88776 78999999999999985
No 2
>smart00218 ZU5 Domain present in ZO-1 and Unc5-like netrin receptors. Domain of unknown function.
Probab=99.40 E-value=3.1e-13 Score=104.21 Aligned_cols=50 Identities=54% Similarity=0.909 Sum_probs=47.9
Q ss_pred CCcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCC
Q psy4885 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGS 50 (187)
Q Consensus 1 ~e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~ 50 (187)
.|+|.|+|+|++.||+|++|.+||+++|||+|+.++++++++++++|+|.
T Consensus 55 ~~~e~llSpvV~cGP~G~~f~~PViL~vPHcA~~~~~~w~i~l~~~~~~~ 104 (104)
T smart00218 55 EEGETLLSPVVECGPHGALFLRPVILEVPHCASLRPRDWEIVLLRSENGG 104 (104)
T ss_pred CCCcEeeCCeEEECCCCCeEcCCEEEecccccCCCCCccEEEEEcccCCC
Confidence 47999999999999999999999999999999999999999999999874
No 3
>PF00791 ZU5: ZU5 domain; InterPro: IPR000906 This is a domain of unknown function, present in ZO-1 and Unc5-like netrin receptors. It is also found in different variants of ankyrin, which are responsible for attaching integral membrane proteins to cytoskeletal elements.; PDB: 4D8O_A 3G5B_A 3UD2_C 3KBT_D 3UD1_A 3KBU_D 3F59_A 2KXS_A 2KXR_A.
Probab=99.08 E-value=1.8e-10 Score=87.52 Aligned_cols=48 Identities=40% Similarity=0.711 Sum_probs=42.8
Q ss_pred CcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCC
Q psy4885 2 ESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGS 50 (187)
Q Consensus 2 e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~ 50 (187)
|+|.|+|.+++++|+|.+|.+||+|.|||+|..+ ++++.++|+|.||+
T Consensus 56 ~~e~llSpvv~~gP~gl~f~kPV~L~iPHca~~~-~~~w~~~l~s~~~~ 103 (103)
T PF00791_consen 56 EGETLLSPVVECGPSGLKFKKPVTLTIPHCAELT-SNNWSVVLKSQNGQ 103 (103)
T ss_dssp TTEEESSTCEEEESTTEEEEEEEEEEEE--BCCS-SSEEEEEEEESSST
T ss_pred CCCEEeCCEEEEECCCCeECCCEEEEeccccccC-CCceEEEEEecCCC
Confidence 6899999999999999999999999999999999 77788889999985
No 4
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=97.63 E-value=3.4e-05 Score=49.16 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=16.3
Q ss_pred EEEEEeCCCCeEEEEEeee
Q psy4885 88 IVRILTVDFPQYFAVVSRL 106 (187)
Q Consensus 88 v~ri~t~dfP~yFaVVSR~ 106 (187)
+.+|...+| +||+||||+
T Consensus 18 ~A~C~V~hF-SWFlvVsRp 35 (35)
T PF10461_consen 18 WACCSVPHF-SWFLVVSRP 35 (35)
T ss_pred eEEeccccc-EEEEEEecC
Confidence 888888888 999999996
No 5
>PF00791 ZU5: ZU5 domain; InterPro: IPR000906 This is a domain of unknown function, present in ZO-1 and Unc5-like netrin receptors. It is also found in different variants of ankyrin, which are responsible for attaching integral membrane proteins to cytoskeletal elements.; PDB: 4D8O_A 3G5B_A 3UD2_C 3KBT_D 3UD1_A 3KBU_D 3F59_A 2KXS_A 2KXR_A.
Probab=96.79 E-value=0.00063 Score=51.70 Aligned_cols=36 Identities=39% Similarity=0.556 Sum_probs=28.8
Q ss_pred HhCCCceecceEEEecCCccCCCCeEEEecCCCCCC
Q psy4885 131 LLGNRVAVSPIVSIEPRRRKFHKPITLTIPLPQAAN 166 (187)
Q Consensus 131 l~g~~~~~SPivtleprrrkFhkPItltiPlP~~~~ 166 (187)
+...+...||+|.+.|.-.+|+|||+|+||.-....
T Consensus 54 l~~~e~llSpvv~~gP~gl~f~kPV~L~iPHca~~~ 89 (103)
T PF00791_consen 54 LEEGETLLSPVVECGPSGLKFKKPVTLTIPHCAELT 89 (103)
T ss_dssp TTTTEEESSTCEEEESTTEEEEEEEEEEEE--BCCS
T ss_pred cCCCCEEeCCEEEEECCCCeECCCEEEEeccccccC
Confidence 445577889999999999999999999999765544
No 6
>smart00218 ZU5 Domain present in ZO-1 and Unc5-like netrin receptors. Domain of unknown function.
Probab=94.84 E-value=0.048 Score=42.26 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=29.5
Q ss_pred hCCCceecceEEEecCCccCCCCeEEEecCCCCCC
Q psy4885 132 LGNRVAVSPIVSIEPRRRKFHKPITLTIPLPQAAN 166 (187)
Q Consensus 132 ~g~~~~~SPivtleprrrkFhkPItltiPlP~~~~ 166 (187)
.+.+...||+|..-|.--+|+|||+|+||..-...
T Consensus 55 ~~~e~llSpvV~cGP~G~~f~~PViL~vPHcA~~~ 89 (104)
T smart00218 55 EEGETLLSPVVECGPHGALFLRPVILEVPHCASLR 89 (104)
T ss_pred CCCcEeeCCeEEECCCCCeEcCCEEEecccccCCC
Confidence 34567789999999999999999999999885443
No 7
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=61.56 E-value=5.9 Score=19.89 Aligned_cols=11 Identities=45% Similarity=1.027 Sum_probs=7.6
Q ss_pred EEecCCCCcee
Q psy4885 44 LRSDDGSTWKE 54 (187)
Q Consensus 44 lrSd~G~~W~e 54 (187)
..+|+|.+|+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 36789999974
No 8
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=41.29 E-value=53 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=24.0
Q ss_pred HHHHHhCCCceecceEEEecCCccCCCCeEEEecCCCCCCcC
Q psy4885 127 LVTKLLGNRVAVSPIVSIEPRRRKFHKPITLTIPLPQAANKG 168 (187)
Q Consensus 127 ~v~~l~g~~~~~SPivtleprrrkFhkPItltiPlP~~~~~~ 168 (187)
+...|..|+++.. |-.+.=....+|+||.|++|...
T Consensus 9 i~dYl~~~gV~~~------pv~~~~~~~p~v~lP~P~GW~~~ 44 (175)
T PF10738_consen 9 IADYLESNGVTEE------PVAPGDPGAPTVSLPTPPGWEPA 44 (175)
T ss_pred HHHHHHhcCceEE------ecCCCCCCCCEEeccCCcCcccC
Confidence 4455556665544 44333446779999999999964
No 9
>PF06762 LMF1: Lipase maturation factor; InterPro: IPR009613 This family, which includes bacterial and eukaryotic members, represents a conserved region located towards the C-terminal end of a number of hypothetical proteins of unknown function. These are possibly integral membrane proteins.
Probab=40.50 E-value=17 Score=33.86 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=56.7
Q ss_pred cccCCCCceEEEEEEecCC---CCceeccccccHHHHHHHhhcCCCcccccchhhcccccEEEEEeCCCCe-----EEEE
Q psy4885 31 FASLRNKERELIILRSDDG---STWKEHKLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQ-----YFAV 102 (187)
Q Consensus 31 ~as~rg~~REivVlrSd~G---~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~dfP~-----yFaV 102 (187)
|++..++..||||--|+|| ..|+|-.-.+++..+++ .-+.+....|- |||-
T Consensus 248 F~~mt~~R~EIIiEGs~d~~~~~~W~EYeF~~KPg~v~r---------------------~P~~vaPy~pRLDWqmWFaA 306 (384)
T PF06762_consen 248 FGSMTKGRPEIIIEGSNDGDPTGPWREYEFKYKPGDVNR---------------------RPPFVAPYQPRLDWQMWFAA 306 (384)
T ss_pred ccccCCCceEEEEEeccCCCCCCceEEeecccCCCCccc---------------------CCCcCCcCCchhhHHHHhhc
Confidence 6777888999999999999 99999999888875332 12333333333 8988
Q ss_pred EeeeeeeeeecCCCCeeeeecCHHHHHHHhCCCceecceEEE
Q psy4885 103 VSRLRQEIHAVGPEGGVAQPIPSELVTKLLGNRVAVSPIVSI 144 (187)
Q Consensus 103 VSR~~qe~~~V~peGg~vqpv~~~~v~~l~g~~~~~SPivtl 144 (187)
.+-..++- -=..++.+|+.|+..+.-++.=
T Consensus 307 l~~~~~~p------------Wf~~ll~rLL~n~~~Vl~LL~~ 336 (384)
T PF06762_consen 307 LGTYQQNP------------WFLSLLYRLLQNDPEVLSLLDH 336 (384)
T ss_pred cCCCCCCc------------hHHHHHHHHHcCCHHHHHHhcc
Confidence 87655443 3347888888887666555443
No 10
>COG1762 PtsN Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=27.61 E-value=54 Score=25.60 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=31.6
Q ss_pred EecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceec
Q psy4885 12 ELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEH 55 (187)
Q Consensus 12 el~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh 55 (187)
+++|+| .+| .|.|||.-+---++--++|.+...+=.|...
T Consensus 51 ~~~~tg---i~~-gIAIPHa~~~~v~~~~i~~~~l~~pv~f~~~ 90 (152)
T COG1762 51 KLGSTG---IGP-GIAIPHAKSEHVKKPAIAVARLKEPVDFGSL 90 (152)
T ss_pred hhcCCc---ccC-ceecCCCChhhhccCEEEEEEeCCCcCCCCC
Confidence 467777 233 2899999887788889999999999999753
No 11
>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....
Probab=24.87 E-value=2.6e+02 Score=22.83 Aligned_cols=67 Identities=9% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccchhhcccccEEEEEeCCCCeEEEEEeeeeeeeeec
Q psy4885 34 LRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQEIHAV 113 (187)
Q Consensus 34 ~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~~V 113 (187)
..+..-|++++.-+.++++|+...+..+. +. + ......-+.+.+||..+.=+++++.....
T Consensus 67 ~~~~~~Dl~~v~l~~~~kfrDIrk~~~~~-----~~------------~-~~~~~l~v~~~~~~~~~~~v~~v~~~~~i- 127 (172)
T PF00548_consen 67 RDGVDTDLTLVKLPRNPKFRDIRKFFPES-----IP------------E-YPECVLLVNSTKFPRMIVEVGFVTNFGFI- 127 (172)
T ss_dssp TTSSEEEEEEEEEESSS-B--GGGGSBSS-----GG------------T-EEEEEEEEESSSSTCEEEEEEEEEEEEEE-
T ss_pred CCCcceeEEEEEccCCcccCchhhhhccc-----cc------------c-CCCcEEEEECCCCccEEEEEEEEeecCcc-
Confidence 45568899999999999999999886522 11 1 11224456688999988888888887775
Q ss_pred CCCCee
Q psy4885 114 GPEGGV 119 (187)
Q Consensus 114 ~peGg~ 119 (187)
..+|..
T Consensus 128 ~~~g~~ 133 (172)
T PF00548_consen 128 NLSGTT 133 (172)
T ss_dssp EETTEE
T ss_pred ccCCCE
Confidence 666665
No 12
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=23.40 E-value=66 Score=28.04 Aligned_cols=29 Identities=38% Similarity=0.496 Sum_probs=23.0
Q ss_pred ccccCCCCceEEEEEEecCCCCceecccccc
Q psy4885 30 HFASLRNKERELIILRSDDGSTWKEHKLDAS 60 (187)
Q Consensus 30 ~~as~rg~~REivVlrSd~G~~W~eh~~~~~ 60 (187)
.|.+-|- --+++.|||.|.+|+..+.+++
T Consensus 106 ~F~s~RP--a~~i~erSd~G~tW~p~qyfa~ 134 (238)
T smart00136 106 KFCSPRP--SLWILERSDFGKTWQPWQYFSS 134 (238)
T ss_pred EecCCCC--ceEEEeecCCCCCCcEeeeeec
Confidence 3556666 5677799999999999998875
No 13
>PRK09665 PTS system galactitol-specific transporter subunit IIA; Provisional
Probab=20.43 E-value=81 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.488 Sum_probs=26.2
Q ss_pred EEEEecccccCCCCceEEEEEEecCCCCcee
Q psy4885 24 VIIEVPHFASLRNKERELIILRSDDGSTWKE 54 (187)
Q Consensus 24 V~ievP~~as~rg~~REivVlrSd~G~~W~e 54 (187)
-.|.|||..+.-.++--|.|.+..++-.|.+
T Consensus 56 ~gIAIPH~~~~~v~~~~i~v~~l~~pI~w~~ 86 (150)
T PRK09665 56 HAVAIPHCEAIHAKSPAIYLIRPDKKVHFQQ 86 (150)
T ss_pred CCEEcCCCChhhcCcceEEEEEeCCCeeeee
Confidence 3688999988777778899999999999964
Done!