Query psy4885
Match_columns 187
No_of_seqs 84 out of 101
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ud1_A Ankyrin-1; beta sandwic 100.0 9.8E-72 3.3E-76 495.6 16.6 185 1-187 59-270 (326)
2 4d8o_A Ankyrin-2; ZU5, UPA, de 100.0 4.4E-65 1.5E-69 479.8 17.2 176 1-187 76-278 (581)
3 3f59_A Ankyrin-1; beta sandwic 100.0 4.7E-44 1.6E-48 291.5 8.6 103 1-105 59-161 (161)
4 3g5b_A Netrin receptor UNC5B; 99.1 4.1E-10 1.4E-14 102.6 9.0 91 2-107 56-147 (405)
5 2kxr_A Tight junction protein 99.0 3.1E-10 1.1E-14 88.1 3.5 45 2-62 59-103 (118)
6 2kxs_A Tight junction protein 98.4 4.7E-08 1.6E-12 78.5 1.8 42 2-59 73-114 (146)
7 3f59_A Ankyrin-1; beta sandwic 92.7 0.059 2E-06 43.7 2.7 33 134-166 61-93 (161)
8 2kxr_A Tight junction protein 89.2 0.13 4.3E-06 39.6 1.4 30 134-163 60-89 (118)
9 3ud1_A Ankyrin-1; beta sandwic 87.9 0.94 3.2E-05 40.2 6.3 83 4-108 218-312 (326)
10 4d8o_A Ankyrin-2; ZU5, UPA, de 87.1 1.6 5.5E-05 41.5 7.7 54 4-58 235-292 (581)
11 3g5b_A Netrin receptor UNC5B; 85.3 0.78 2.7E-05 41.7 4.4 34 131-164 54-87 (405)
12 2kxs_A Tight junction protein 84.4 0.38 1.3E-05 38.3 1.7 29 135-163 75-103 (146)
13 3q3y_A HEVB EV93 3C protease; 42.6 39 0.0013 27.7 5.3 56 35-108 68-123 (191)
14 1yel_A AT1G16640; CESG, protei 39.4 16 0.00055 26.0 2.2 30 26-55 24-55 (104)
15 3lpe_A Putative transcription 37.0 22 0.00075 25.2 2.6 79 46-133 6-91 (92)
16 3zve_A 3C protease; hydrolase, 33.8 1.1E+02 0.0036 24.7 6.5 68 33-119 64-131 (190)
17 4dcd_A Protease 3C, genome pol 21.4 1.6E+02 0.0053 24.0 5.4 68 33-119 71-138 (190)
No 1
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=100.00 E-value=9.8e-72 Score=495.63 Aligned_cols=185 Identities=55% Similarity=0.958 Sum_probs=180.1
Q ss_pred CCcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccch
Q psy4885 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQL 80 (187)
Q Consensus 1 ~e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ 80 (187)
+|||+|||||||+||||++|++||+|+|||+|++||++|||||||||||++|+||.+.+++++++++|||+ +|+++++
T Consensus 59 ~~gE~LvS~VlelgP~G~~F~~PV~l~iPh~a~~~~~~REivVlrSd~G~~W~eh~~~~~~~~l~~~l~g~--~~~~~sl 136 (326)
T 3ud1_A 59 AEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGM--DEELGSL 136 (326)
T ss_dssp CTTCEECSCEEEEESTTCEEEEEEEEEEECCCSCCSSSEEEEEEEESSSSCCEECCCSSCGGGHHHHTTTC--CCCCCCH
T ss_pred CCCcccccceEEeccCCccCcccEEEEeccccccCCCceEEEEEEecCCCcceecccccchhHHHhhhccc--cccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998 6899999
Q ss_pred hhcccccEEEEEeCCCCeEEEEEeeeeeeeeecCCCCee---------------------------eeecCHHHHHHHhC
Q psy4885 81 EDLHTSRIVRILTVDFPQYFAVVSRLRQEIHAVGPEGGV---------------------------AQPIPSELVTKLLG 133 (187)
Q Consensus 81 ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~~V~peGg~---------------------------vqpv~~~~v~~l~g 133 (187)
|+++++|++||+|+|||+|||||||++||+|+||||||+ |||||++++++|+|
T Consensus 137 e~~~k~r~~ri~v~~fp~~FaVVSRl~qe~~~V~~eGg~l~Ss~~p~Vq~~FP~ga~~k~~~V~lQvqpV~~~~v~~l~g 216 (326)
T 3ud1_A 137 EELEKKRVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDELVTKLLG 216 (326)
T ss_dssp HHHHC-CEEEEEEEECCSEEEEEEEECCCCEEECTTCEEEECSSCTTCEEEECTTSSSSCEEEEEEEECCCHHHHHHHHT
T ss_pred hhhcCceEEEEEecCCCeEEEEEeeEEeeeeeECCCCceEeeccCCCeEEecCCccccCceEEEEEEEecCHHHHHHHhc
Confidence 999999999999999999999999999999999999999 89999999999999
Q ss_pred CCceecceEEEecCCccCCCCeEEEecCCCCCCcCccccCCCCCCceeEeeecC
Q psy4885 134 NRVAVSPIVSIEPRRRKFHKPITLTIPLPQAANKGMINQYSGNAPTLRLLCSIT 187 (187)
Q Consensus 134 ~~~~~SPivtleprrrkFhkPItltiPlP~~~~~~~~~~~~~~~~~lrLLcsit 187 (187)
+++++|||||+|||+|||||||||+||||++++|+|+|+|+||+++|||||||+
T Consensus 217 ~~~s~SPivtlep~~~~F~kPVTv~lPlPp~~~~~~~~~~~g~~~~lrlLcsi~ 270 (326)
T 3ud1_A 217 NQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVI 270 (326)
T ss_dssp TSCEECCEEEEESSSCEEEEEEEEEEECCHHHHHCCSSCSCCCC-CEEEEEECC
T ss_pred CCCccCCeEEEecCCcccCCCeEEEeeCCCCcccccccccCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999999999999999999986
No 2
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.4e-65 Score=479.77 Aligned_cols=176 Identities=65% Similarity=1.116 Sum_probs=161.4
Q ss_pred CCcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccch
Q psy4885 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQL 80 (187)
Q Consensus 1 ~e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ 80 (187)
+|||+||||||||+|+|++|++||+|||||||++||++|||||||||||++|+||.+++++++++++|||+ +|+++++
T Consensus 76 ~~~E~LvS~Vlel~P~g~~F~~PV~l~iPh~a~~r~~~REivV~rsd~g~~W~e~~~~~~~~~~~~~l~g~--~~~~~~~ 153 (581)
T 4d8o_A 76 VEGEGLASRLIEVGPSGAQFLGPVIVEIPHFAALRGKERELVVLRSENGDSWKEHFCDYTEDELNEILNGM--DEVLDSP 153 (581)
T ss_dssp CTTCEESSCCEEEESTTCEEEEEEEEEEECCBCCTTTTEEEEEEEESSSSCCEECCCCC----------CC--SCCCCCH
T ss_pred CCcchhccceeEeccCCCcccCceEEEeccccccCCCceEEEEEEcCCCCcchhcccccchhhhhhhhccc--cccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998 5679999
Q ss_pred hhcccccEEEEEeCCCCeEEEEEeeeeeeeeecCCCCee---------------------------eeecCHHHHHHHhC
Q psy4885 81 EDLHTSRIVRILTVDFPQYFAVVSRLRQEIHAVGPEGGV---------------------------AQPIPSELVTKLLG 133 (187)
Q Consensus 81 ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~~V~peGg~---------------------------vqpv~~~~v~~l~g 133 (187)
||++++||+||+|+|||+|||||||++||+|+||||||+ |||||++++++|+|
T Consensus 154 ~e~~~~ri~ri~t~~fp~~FaVVSR~~qe~~~V~peGg~l~Ss~~p~V~~~fP~ga~~k~~~v~lqvqpV~~~~v~~l~~ 233 (581)
T 4d8o_A 154 EDLEKKRICRIITRDFPQYFAVVSRIKQDSNLIGPEGGVLSSTVVPQVQAVFPEGALTKRIRVGLQAQPMHSELVKKILG 233 (581)
T ss_dssp HHHHHHTEEEEEEEECCSEEEEEEEECEEEEEEBTTBEEEECSSSTTCEEEECTTSCSSCEEEEEEEECCCHHHHHHHHT
T ss_pred hhhcceeEEEEEecCCCeEEEEEeeEeeecceeCCCCCeEEeeccCCeEEEeCCcccccceEEEEEEEecCHHHHHHhhc
Confidence 999999999999999999999999999999999999999 89999999999999
Q ss_pred CCceecceEEEecCCccCCCCeEEEecCCCCCCcCccccCCCCCCceeEeeecC
Q psy4885 134 NRVAVSPIVSIEPRRRKFHKPITLTIPLPQAANKGMINQYSGNAPTLRLLCSIT 187 (187)
Q Consensus 134 ~~~~~SPivtleprrrkFhkPItltiPlP~~~~~~~~~~~~~~~~~lrLLcsit 187 (187)
+++++|||||+|||++||||||||+||||+++ ||+++||||||||
T Consensus 234 ~~~~~Spivt~ep~~~~F~kPvtv~lP~P~~~---------gd~~~lrLL~s~~ 278 (581)
T 4d8o_A 234 NKATFSPIVTLEPRRRKFHKPITMTIPVPKAS---------GDAPTLRLLCSIT 278 (581)
T ss_dssp TSEEECCEEEEESSSCEEEEEEEEEEECCTTC---------CSCTTEEEEEECC
T ss_pred CCCccCceEEEecCcccccCCeeEEeeCCCCC---------CCCCceEEEeecC
Confidence 99999999999999999999999999999987 5899999999985
No 3
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=100.00 E-value=4.7e-44 Score=291.45 Aligned_cols=103 Identities=53% Similarity=0.943 Sum_probs=93.4
Q ss_pred CCcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccch
Q psy4885 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQL 80 (187)
Q Consensus 1 ~e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ 80 (187)
+|||+||||||||||||++|++||+|||||||++||++||+||||||||++||||.+++++++++++|||+ +|+++++
T Consensus 59 ~egE~LlSrvlElgP~G~~F~~PV~leiPh~a~~~~~eREvvvlrSdnG~sW~eh~~~~~~~~~~~~l~~~--~~~l~~~ 136 (161)
T 3f59_A 59 AEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGM--DEELGSL 136 (161)
T ss_dssp CTTCEECSCEEEEESTTCEEEEEEEEEEECC--------CEEEEEESSSSCCEECCCSSCGGGHHHHHTTC--SCCCCCH
T ss_pred CCCccccCceeeecCCCccccCCEEEeccccccCCCCceEEEEEECCCCCCcccccccccHHHHHHHHhcc--cccccCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred hhcccccEEEEEeCCCCeEEEEEee
Q psy4885 81 EDLHTSRIVRILTVDFPQYFAVVSR 105 (187)
Q Consensus 81 ee~~~~rv~ri~t~dfP~yFaVVSR 105 (187)
||++++|||||+|+|||||||||||
T Consensus 137 e~l~~~ri~ri~t~d~p~yfavvsR 161 (161)
T 3f59_A 137 EELEKKRVCRIITTDFPLYFVIMSR 161 (161)
T ss_dssp HHHHHHTEEEEEEEECCSEEEEEEC
T ss_pred hHhhcCeEEEEeCCCCcceeEEEeC
Confidence 9999999999999999999999998
No 4
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=99.05 E-value=4.1e-10 Score=102.62 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=71.5
Q ss_pred CcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccchh
Q psy4885 2 ESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQLE 81 (187)
Q Consensus 2 e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~e 81 (187)
++|.|+|+|+..||+|++|.+||++.|||+|+..++++++.+++++++.+|+|+-+.-. |.+.++=
T Consensus 56 ~~etllSPvV~cGP~g~~f~~PViL~ipHcA~~~~~~W~i~l~~~~~~~~W~ev~~~ge--------------E~~~t~~ 121 (405)
T 3g5b_A 56 GSQTVLSPSVTCGPTGLLLCRPVVLTVPHCAEVIAGDWIFQLKTQAHQGHWEEVVTLDE--------------ETLNTPC 121 (405)
T ss_dssp TTEEECSCCEEEECSSCCCSSCEEEEEECCBCCSSSCCEEEEEEESSTTCEEEEEETTC--------------CCTTCSE
T ss_pred CCccccCceEEECCCCCccCCCeEEeecCCCCCCCCcCEEEEecCCCCCCccCccccCC--------------ccCCcce
Confidence 68999999999999999999999999999999999999999999999999999975311 1111100
Q ss_pred -hcccccEEEEEeCCCCeEEEEEeeee
Q psy4885 82 -DLHTSRIVRILTVDFPQYFAVVSRLR 107 (187)
Q Consensus 82 -e~~~~rv~ri~t~dfP~yFaVVSR~~ 107 (187)
-.-+..-|.|.|.+| +-|++|.-..
T Consensus 122 y~qld~~~c~i~~~~l-g~y~lvGe~~ 147 (405)
T 3g5b_A 122 YCQLEAKSCHILLDQL-GTYVFTGESY 147 (405)
T ss_dssp EEEECSSEEEEEESSC-EEEEEEEECC
T ss_pred EEEecCCcEEEEhhcC-cceEEEcccC
Confidence 001133577878887 8999998653
No 5
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=88.14 Aligned_cols=45 Identities=36% Similarity=0.675 Sum_probs=40.9
Q ss_pred CcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccccHH
Q psy4885 2 ESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEE 62 (187)
Q Consensus 2 e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~~~~ 62 (187)
++|.|+|++++.||+|++|++||+++|||+| +++|+++..+.++.
T Consensus 59 ~ge~LlSpvV~cGP~G~~F~~PViL~iPHca----------------~~~W~~~~~~~~~~ 103 (118)
T 2kxr_A 59 KGETLLSPLVAAGPHGLKFLKPVELRLPHCD----------------PKTWQNKCLPGDPN 103 (118)
T ss_dssp TCCCBCSTTEECSSSCCEEEEEEEEEECCCC----------------TTSSCSSCCTTCGG
T ss_pred CCcEeeCCeEEECCCCCcCcCCEEEEcCCCC----------------ccchhhhccCCccc
Confidence 6899999999999999999999999999997 68999999775544
No 6
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=98.44 E-value=4.7e-08 Score=78.49 Aligned_cols=42 Identities=38% Similarity=0.698 Sum_probs=37.6
Q ss_pred CcccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCCCCceeccccc
Q psy4885 2 ESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDA 59 (187)
Q Consensus 2 e~E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G~~W~eh~~~~ 59 (187)
++|.|+|++++.||+|++|.+||++.|||+| +++|++....-
T Consensus 73 ~getLlSPvV~CGP~G~~F~kPViL~iPHcA----------------~~~W~~v~~~g 114 (146)
T 2kxs_A 73 KGETLLSPLVMCGPHGLKFLKPVELRLPHCD----------------PKTWQNKCLPG 114 (146)
T ss_dssp TTCBCCSCCEEESSSSEEEEEEEEEEECCCC----------------GGGGSCCCCTT
T ss_pred CCcEeeCceEEECCCCCcCcCCEEEEcCcCC----------------CcCCEEeEeCC
Confidence 6899999999999999999999999999997 46998877653
No 7
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=92.74 E-value=0.059 Score=43.74 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=26.8
Q ss_pred CCceecceEEEecCCccCCCCeEEEecCCCCCC
Q psy4885 134 NRVAVSPIVSIEPRRRKFHKPITLTIPLPQAAN 166 (187)
Q Consensus 134 ~~~~~SPivtleprrrkFhkPItltiPlP~~~~ 166 (187)
..+.+|+||-+-|.-.+|++||+|.||.-.+..
T Consensus 61 gE~LlSrvlElgP~G~~F~~PV~leiPh~a~~~ 93 (161)
T 3f59_A 61 EEGLASRIIALGPTGAQFLSPVIVEIPHFASHG 93 (161)
T ss_dssp TCEECSCEEEEESTTCEEEEEEEEEEECC----
T ss_pred CccccCceeeecCCCccccCCEEEeccccccCC
Confidence 467889999999999999999999999876554
No 8
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=89.21 E-value=0.13 Score=39.62 Aligned_cols=30 Identities=33% Similarity=0.602 Sum_probs=26.7
Q ss_pred CCceecceEEEecCCccCCCCeEEEecCCC
Q psy4885 134 NRVAVSPIVSIEPRRRKFHKPITLTIPLPQ 163 (187)
Q Consensus 134 ~~~~~SPivtleprrrkFhkPItltiPlP~ 163 (187)
.+...||+|..-|.-.+|+|||+|+||...
T Consensus 60 ge~LlSpvV~cGP~G~~F~~PViL~iPHca 89 (118)
T 2kxr_A 60 GETLLSPLVAAGPHGLKFLKPVELRLPHCD 89 (118)
T ss_dssp CCCBCSTTEECSSSCCEEEEEEEEEECCCC
T ss_pred CcEeeCCeEEECCCCCcCcCCEEEEcCCCC
Confidence 345789999999999999999999999875
No 9
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=87.90 E-value=0.94 Score=40.22 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=56.9
Q ss_pred ccceeeeeEecccCeeecccEEEEeccccc--------CCCCceEEEEEEe----cCCCCceeccccccHHHHHHHhhcC
Q psy4885 4 EALASRILELGPAGAKFLGPVIIEVPHFAS--------LRNKERELIILRS----DDGSTWKEHKLDASEEAVQEVLNES 71 (187)
Q Consensus 4 E~LaSrVlel~P~g~~F~~PV~ievP~~as--------~rg~~REivVlrS----d~G~~W~eh~~~~~~~~~~~~L~~~ 71 (187)
++-+|-++-+.|...+|++||+|.||.-.. +.|....+=+|.| ++..+|.|.+.... |
T Consensus 218 ~~s~SPivtlep~~~~F~kPVTv~lPlPp~~~~~~~~~~~g~~~~lrlLcsi~gg~~~~~WeDiT~~~~-------l--- 287 (326)
T 3ud1_A 218 QATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTK-------L--- 287 (326)
T ss_dssp SCEECCEEEEESSSCEEEEEEEEEEECCHHHHHCCSSCSCCCC-CEEEEEECCCSTTCCCCEECBTTBC-------C---
T ss_pred CCccCCeEEEecCCcccCCCeEEEeeCCCCcccccccccCCCCCceEEEEecCCCCCccccccccCceE-------E---
Confidence 456799999999999999999999997432 2244567778887 35669999985411 1
Q ss_pred CCcccccchhhcccccEEEEEeCCCCeEEEEEeeeee
Q psy4885 72 FPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQ 108 (187)
Q Consensus 72 ~~~e~~~~~ee~~~~rv~ri~t~dfP~yFaVVSR~~q 108 (187)
++ .+-+..+-|+.| .||.++-|..-
T Consensus 288 ----------~~-~~~~v~Fttt~~-ar~wl~dc~~~ 312 (326)
T 3ud1_A 288 ----------VY-ANECANFTTNVS-ARFWLSDCPRT 312 (326)
T ss_dssp ----------EE-ETTEEEEEEEEC-CEEEEEECSSG
T ss_pred ----------EE-eccEEEEEecce-eeEEeecCCCc
Confidence 11 122456655555 88888877653
No 10
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=87.05 E-value=1.6 Score=41.51 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=44.1
Q ss_pred ccceeeeeEecccCeeecccEEEEecccccCCCCceEEEEEEecCC----CCceecccc
Q psy4885 4 EALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDG----STWKEHKLD 58 (187)
Q Consensus 4 E~LaSrVlel~P~g~~F~~PV~ievP~~as~rg~~REivVlrSd~G----~~W~eh~~~ 58 (187)
.+-+|.|+-+.|...+|.+||+|.||.-... |....+=+|.|-.| .+|.+.+..
T Consensus 235 ~~~~Spivt~ep~~~~F~kPvtv~lP~P~~~-gd~~~lrLL~s~~gg~~~a~WeDIT~~ 292 (581)
T 4d8o_A 235 KATFSPIVTLEPRRRKFHKPITMTIPVPKAS-GDAPTLRLLCSITGGTTPAQWEDITGT 292 (581)
T ss_dssp SEEECCEEEEESSSCEEEEEEEEEEECCTTC-CSCTTEEEEEECCCTTSCCCCEECGGG
T ss_pred CCccCceEEEecCcccccCCeeEEeeCCCCC-CCCCceEEEeecCCCCCcccccccCCc
Confidence 4568999999999999999999999986554 65667888998654 489998853
No 11
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=85.29 E-value=0.78 Score=41.69 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=29.0
Q ss_pred HhCCCceecceEEEecCCccCCCCeEEEecCCCC
Q psy4885 131 LLGNRVAVSPIVSIEPRRRKFHKPITLTIPLPQA 164 (187)
Q Consensus 131 l~g~~~~~SPivtleprrrkFhkPItltiPlP~~ 164 (187)
+.+.+...||+|..=|.--+|+|||+++||.-..
T Consensus 54 l~~~etllSPvV~cGP~g~~f~~PViL~ipHcA~ 87 (405)
T 3g5b_A 54 SEGSQTVLSPSVTCGPTGLLLCRPVVLTVPHCAE 87 (405)
T ss_dssp CSTTEEECSCCEEEECSSCCCSSCEEEEEECCBC
T ss_pred CCCCccccCceEEECCCCCccCCCeEEeecCCCC
Confidence 3456778899999999988999999999998643
No 12
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=84.40 E-value=0.38 Score=38.35 Aligned_cols=29 Identities=34% Similarity=0.586 Sum_probs=26.0
Q ss_pred CceecceEEEecCCccCCCCeEEEecCCC
Q psy4885 135 RVAVSPIVSIEPRRRKFHKPITLTIPLPQ 163 (187)
Q Consensus 135 ~~~~SPivtleprrrkFhkPItltiPlP~ 163 (187)
+...||+|..-|.-.+|+|||+|+||.-.
T Consensus 75 etLlSPvV~CGP~G~~F~kPViL~iPHcA 103 (146)
T 2kxs_A 75 ETLLSPLVMCGPHGLKFLKPVELRLPHCD 103 (146)
T ss_dssp CBCCSCCEEESSSSEEEEEEEEEEECCCC
T ss_pred cEeeCceEEECCCCCcCcCCEEEEcCcCC
Confidence 45679999999999999999999999865
No 13
>3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ...
Probab=42.55 E-value=39 Score=27.72 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccchhhcccccEEEEEeCCCCeEEEEEeeeee
Q psy4885 35 RNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQ 108 (187)
Q Consensus 35 rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~dfP~yFaVVSR~~q 108 (187)
.|..-||.+++-+.|++||+...+..++. + + .+.-+-.+.+.+||..|.=|.+...
T Consensus 68 ~g~~lElt~v~l~~~~kFRDIrkfi~~~~--------------~---~-~~~~~Lv~ns~~~p~~~~~vG~v~~ 123 (191)
T 3q3y_A 68 DGTNLELTLLKLNRNEKFRDIRGFLAREE--------------V---E-VNEAVLAINTSKFPNMYIPVGQVTD 123 (191)
T ss_dssp TCCEEEEEEEEEECSSCBCCCGGGBCSSC--------------C---C-EEEEEEEECSSSSTTEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCccccchHHhccccc--------------c---c-CCceEEEEEcCCCcceEEEeccEEE
Confidence 46678999999999999999997754431 0 1 1111334457889988888877776
No 14
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=39.41 E-value=16 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=21.5
Q ss_pred EEec--ccccCCCCceEEEEEEecCCCCceec
Q psy4885 26 IEVP--HFASLRNKERELIILRSDDGSTWKEH 55 (187)
Q Consensus 26 ievP--~~as~rg~~REivVlrSd~G~~W~eh 55 (187)
+.|| |...+.+...+.++|+..+|.+|+=-
T Consensus 24 L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~ 55 (104)
T 1yel_A 24 LEIPLGFNEYFPAPFPITVDLLDYSGRSWTVR 55 (104)
T ss_dssp EECCHHHHTTCCCCCCSEEEEEETTSCEEEEE
T ss_pred EECCHHHHHhcCccCCCEEEEECCCCCEEEEE
Confidence 4666 45555565667788899999999853
No 15
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.98 E-value=22 Score=25.20 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred ecCCCCceeccccccHH-HHHHHhhcCCCcccccchhhcccccEEEEEeC-CCCeEEEEEeeeeeee-eecC-CCCee--
Q psy4885 46 SDDGSTWKEHKLDASEE-AVQEVLNESFPGEELRQLEDLHTSRIVRILTV-DFPQYFAVVSRLRQEI-HAVG-PEGGV-- 119 (187)
Q Consensus 46 Sd~G~~W~eh~~~~~~~-~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~-dfP~yFaVVSR~~qe~-~~V~-peGg~-- 119 (187)
|-+.-+|.-+.++...| .+.+.|+..... +.+ .+.++..+ .||+|..|=.....+. +.|- ..|-.
T Consensus 6 sv~d~~WYvv~~~sG~E~~V~~~L~~~~~~------~~l---~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~gf 76 (92)
T 3lpe_A 6 SVGAHMIFAVRTMVGQEKNIAGLMASRAEK------EQL---DVYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGI 76 (92)
T ss_dssp ---CCCEEEEEECTTCHHHHHHHHHHHHHH------TTC---CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEEEE
T ss_pred CCCCCeEEEEEEECChHHHHHHHHHHHHHh------cCC---cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCceEe
Confidence 44566788888887665 444445321100 011 26777765 6999999877655443 2221 11111
Q ss_pred e-eecCHHHHHHHhC
Q psy4885 120 A-QPIPSELVTKLLG 133 (187)
Q Consensus 120 v-qpv~~~~v~~l~g 133 (187)
+ -|++.+++.+++.
T Consensus 77 vg~pl~~~Ev~~il~ 91 (92)
T 3lpe_A 77 VPGTIAIEEIEPLLT 91 (92)
T ss_dssp CSSCCCHHHHHHHHC
T ss_pred CCCCCCHHHHHHHhC
Confidence 1 1899999988875
No 16
>3zve_A 3C protease; hydrolase, michael inhibitor; HET: G84; 1.80A {Human enterovirus} PDB: 3zv8_A* 3zva_A* 3zvb_A* 3zv9_A* 3zvd_A* 3zvc_A* 3zvf_A* 3zvg_A*
Probab=33.77 E-value=1.1e+02 Score=24.72 Aligned_cols=68 Identities=15% Similarity=0.294 Sum_probs=46.9
Q ss_pred cCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccchhhcccccEEEEEeCCCCeEEEEEeeeeeeeee
Q psy4885 33 SLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQEIHA 112 (187)
Q Consensus 33 s~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~~ 112 (187)
...+...||++++-+.++++|+...+..+.. ++.. .-...+.+.+||..|.=++.++-..+
T Consensus 64 ~~~~~~~Dlt~v~l~~~~kFRDIr~~~~~~~-----------------~~~~-~~~l~i~s~~~~~~~~~v~~v~~~~~- 124 (190)
T 3zve_A 64 DLTDTNLEITIVKLDRNQKFRDIRHFLPRYE-----------------DDYN-DAVLSVHTSKFPNMYIPVGQVTNYGF- 124 (190)
T ss_dssp CTTCCEEEEEEEEECCSSCBCCCGGGSCSSC-----------------CCEE-EEEEEECSSSCSSEEEEEEEEEEEEE-
T ss_pred cCCCCeEEEEEEEcCCCcccCchHHhccccC-----------------CCCC-CeEEEEECCCCcceEEecccceEece-
Confidence 4567789999999999999999987744320 0111 12345678999999988888776554
Q ss_pred cCCCCee
Q psy4885 113 VGPEGGV 119 (187)
Q Consensus 113 V~peGg~ 119 (187)
+...|+.
T Consensus 125 i~l~g~~ 131 (190)
T 3zve_A 125 LNLGGTP 131 (190)
T ss_dssp EEETTEE
T ss_pred eecCCCe
Confidence 3444443
No 17
>4dcd_A Protease 3C, genome polyprotein; antiviral inhibitors, dipeptidyl inhib hydrolase-hydrolase inhibitor complex; HET: K36; 1.69A {Human poliovirus 1} PDB: 1l1n_A
Probab=21.43 E-value=1.6e+02 Score=23.96 Aligned_cols=68 Identities=9% Similarity=0.198 Sum_probs=44.2
Q ss_pred cCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccchhhcccccEEEEEeCCCCeEEEEEeeeeeeeee
Q psy4885 33 SLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQEIHA 112 (187)
Q Consensus 33 s~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~~ 112 (187)
...|...||+++..+.++++|+...+..++. + +... -.-.+.+.+||.-|.=|+..+...+.
T Consensus 71 ~~~gv~lElt~V~l~r~~kFRDIr~fi~~~~----------~-------~~~~-~~L~vn~~~~~~~~~~vg~v~~~g~i 132 (190)
T 4dcd_A 71 DQAGTNLEITIITLKRNEKFRDIRPHIPTQI----------T-------ETND-GVLIVNTSKYPNMYVPVGAVTEQGYL 132 (190)
T ss_dssp CTTCCEEEEEEEEESSSCCBCCCGGGSCSSC----------C-------CEEE-EEEEECSSSSTTEEEEEEEEEEEEEE
T ss_pred cCCCCeEEEEEEEcCCCccccchhHhccccC----------C-------CCCc-eEEEEecCCCccEEEEeeeeEEeccc
Confidence 4567778999999999999999997754331 0 1011 12334477999887777776665553
Q ss_pred cCCCCee
Q psy4885 113 VGPEGGV 119 (187)
Q Consensus 113 V~peGg~ 119 (187)
...|..
T Consensus 133 -~lsg~~ 138 (190)
T 4dcd_A 133 -NLGGRQ 138 (190)
T ss_dssp -EETTEE
T ss_pred -cCCCCc
Confidence 334443
Done!