Query psy4885
Match_columns 187
No_of_seqs 84 out of 101
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 20:18:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4885.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4885hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cqqa_ b.47.1.4 (A:) 3C cyste 41.1 25 0.0018 25.9 5.8 61 33-111 64-124 (180)
2 d1w0pa3 b.68.1.1 (A:217-346,A: 34.0 11 0.00078 28.5 2.6 20 39-58 42-62 (364)
3 d1w8oa3 b.68.1.1 (A:47-402) Mi 23.2 19 0.0014 26.3 2.2 40 19-58 20-71 (356)
4 d1yela1 b.142.1.2 (A:1-102) At 19.2 28 0.0021 23.1 2.2 28 26-53 22-51 (102)
5 d2slia2 b.68.1.1 (A:277-759) L 17.8 28 0.0021 27.9 2.3 21 37-57 45-66 (483)
6 d2ah2a2 b.68.1.1 (A:1-399) Try 14.9 36 0.0026 27.3 2.2 23 36-58 60-83 (399)
7 d1nxza2 c.116.1.5 (A:74-247) H 14.5 25 0.0018 25.5 1.0 21 109-133 117-137 (174)
8 d3sila_ b.68.1.1 (A:) Salmonel 14.5 49 0.0036 25.3 2.8 46 12-57 23-82 (379)
9 d1v6za2 c.116.1.5 (A:67-228) H 14.0 26 0.0019 25.1 1.0 19 110-132 111-129 (162)
10 d1wqlb1 d.17.4.4 (B:5-186) Sma 13.5 33 0.0024 24.5 1.4 18 36-54 144-161 (182)
No 1
>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}
Probab=41.13 E-value=25 Score=25.88 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=42.3
Q ss_pred cCCCCceEEEEEEecCCCCceeccccccHHHHHHHhhcCCCcccccchhhcccccEEEEEeCCCCeEEEEEeeeeeeee
Q psy4885 33 SLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQEIH 111 (187)
Q Consensus 33 s~rg~~REivVlrSd~G~~W~eh~~~~~~~~~~~~L~~~~~~e~~~~~ee~~~~rv~ri~t~dfP~yFaVVSR~~qe~~ 111 (187)
...+.++|+++++-+.++.|++...+..+. .+ + .......+.+.+++..|.=++.++...+
T Consensus 64 ~~~~~~~Dl~lvklp~~~~frdirk~~~~~-----------~~------~-~~~~~l~i~~~~~~~~~~~vg~~~~~~~ 124 (180)
T d1cqqa_ 64 NKNGIKLEITVLKLDRNEKFRDIRRYIPNN-----------ED------D-YPNCNLALLANQPEPTIINVGDVVSYGN 124 (180)
T ss_dssp CTTSCEEEEEEEEECSSCCBCCGGGGSCSS-----------CC------C-EEEEEEEECTTSSSCEEEEEEEEEECCC
T ss_pred ccCCCceEEEEEEcCCCcccCcchhhhccC-----------CC------C-CCCEEEEEEcCCCCcEEEEeeeeEEeee
Confidence 445778999999999999999988653221 00 1 1123456668888888888887776544
No 2
>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]}
Probab=34.04 E-value=11 Score=28.51 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=15.7
Q ss_pred eEEEEEEecC-CCCceecccc
Q psy4885 39 RELIILRSDD-GSTWKEHKLD 58 (187)
Q Consensus 39 REivVlrSd~-G~~W~eh~~~ 58 (187)
.+||+.||+| |.+|++...-
T Consensus 42 ~di~~~RS~DgGkTWs~~~~i 62 (364)
T d1w0pa3 42 NDIITRTSRDGGITWDTELNL 62 (364)
T ss_dssp EEEEEEEESSSSSSCCCCEES
T ss_pred ceEEEEEeCCCCcCCCCCEEe
Confidence 5799999877 8899986643
No 3
>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=23.25 E-value=19 Score=26.29 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=24.8
Q ss_pred eecccEEEEec-----ccccCCC------CceEEEEEEecC-CCCceecccc
Q psy4885 19 KFLGPVIIEVP-----HFASLRN------KERELIILRSDD-GSTWKEHKLD 58 (187)
Q Consensus 19 ~F~~PV~ievP-----~~as~rg------~~REivVlrSd~-G~~W~eh~~~ 58 (187)
.|-.|-++.+| -++..|. +.-+|++.||.| |.+|++...-
T Consensus 20 ~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v 71 (356)
T d1w8oa3 20 NYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVV 71 (356)
T ss_dssp CEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEE
T ss_pred eeEeCEEEEECCCCEEEEEeeeeCCCCCCCCceEEEEEccCCCCCCCCCEEe
Confidence 45567777776 1221121 246788888877 7799987653
No 4
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.17 E-value=28 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=18.2
Q ss_pred EEec--ccccCCCCceEEEEEEecCCCCce
Q psy4885 26 IEVP--HFASLRNKERELIILRSDDGSTWK 53 (187)
Q Consensus 26 ievP--~~as~rg~~REivVlrSd~G~~W~ 53 (187)
+.|| |...+.+...+-|+|+..+|..|.
T Consensus 22 L~IP~~F~~~~~~~~~~~i~L~d~~G~~W~ 51 (102)
T d1yela1 22 LEIPLGFNEYFPAPFPITVDLLDYSGRSWT 51 (102)
T ss_dssp EECCHHHHTTCCCCCCSEEEEEETTSCEEE
T ss_pred EECCHHHHHhCCCCCCCEEEEEcCCCCEEE
Confidence 4456 444555555555667888899995
No 5
>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=17.83 E-value=28 Score=27.92 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=15.8
Q ss_pred CceEEEEEEecC-CCCceeccc
Q psy4885 37 KERELIILRSDD-GSTWKEHKL 57 (187)
Q Consensus 37 ~~REivVlrSd~-G~~W~eh~~ 57 (187)
+.-+|++.||.| |.+|++...
T Consensus 45 ~~idi~~~RStDgGkTWs~~~~ 66 (483)
T d2slia2 45 SKINIAFAKSTDGGNTWSEPTL 66 (483)
T ss_dssp SCEEEEEEEESSTTSSCCCCEE
T ss_pred CCeeEEEEEecCCCCCCCCCCc
Confidence 455899999866 789987543
No 6
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=14.93 E-value=36 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=17.5
Q ss_pred CCceEEEEEE-ecCCCCceecccc
Q psy4885 36 NKERELIILR-SDDGSTWKEHKLD 58 (187)
Q Consensus 36 g~~REivVlr-Sd~G~~W~eh~~~ 58 (187)
.+.-+||++| +|+|.+|.+...-
T Consensus 60 ~~~idiv~rRS~D~GkTWs~~~~v 83 (399)
T d2ah2a2 60 NSLIDTVAKYSVDDGETWETQIAI 83 (399)
T ss_dssp SSCEEEEEEEESSTTSSCEEEEEE
T ss_pred CcceEEEEEeecCCCcCCCceEEE
Confidence 4567899988 5677899987643
No 7
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=14.54 E-value=25 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=13.7
Q ss_pred eeeecCCCCeeeeecCHHHHHHHhC
Q psy4885 109 EIHAVGPEGGVAQPIPSELVTKLLG 133 (187)
Q Consensus 109 e~~~V~peGg~vqpv~~~~v~~l~g 133 (187)
-...||||||- +++++..+..
T Consensus 117 i~iiIGPEGGf----s~~E~~~~~~ 137 (174)
T d1nxza2 117 VRLLIGSEGGL----SAQEIAQTEQ 137 (174)
T ss_dssp EEEEECCTTCC----CHHHHHHHHH
T ss_pred EEEEEcCCcCc----CHHHHHHHHH
Confidence 35789999997 3455554443
No 8
>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
Probab=14.45 E-value=49 Score=25.31 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=27.5
Q ss_pred EecccCe--eecccEEEEecc---ccc--------CCCCceEEEEEEec-CCCCceeccc
Q psy4885 12 ELGPAGA--KFLGPVIIEVPH---FAS--------LRNKERELIILRSD-DGSTWKEHKL 57 (187)
Q Consensus 12 el~P~g~--~F~~PV~ievP~---~as--------~rg~~REivVlrSd-~G~~W~eh~~ 57 (187)
.=|..|. .|--|-++..|- +|. .--++-+||+.||. +|.+|++...
T Consensus 23 ~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~~~ 82 (379)
T d3sila_ 23 GSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIA 82 (379)
T ss_dssp CSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEEEE
T ss_pred ecCCCCceeeEeccEEEEECCCcEEEEEeeEECCCCCCCCceEEEEEecCCccCCCCCEE
Confidence 3344453 266677776662 121 12246678888876 5779998764
No 9
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=14.02 E-value=26 Score=25.14 Aligned_cols=19 Identities=53% Similarity=0.678 Sum_probs=12.8
Q ss_pred eeecCCCCeeeeecCHHHHHHHh
Q psy4885 110 IHAVGPEGGVAQPIPSELVTKLL 132 (187)
Q Consensus 110 ~~~V~peGg~vqpv~~~~v~~l~ 132 (187)
...||||||- +++++..++
T Consensus 111 ~i~IGPEGGf----s~~Ei~~l~ 129 (162)
T d1v6za2 111 ALAVGPEGGF----AEEEVALLE 129 (162)
T ss_dssp EEEECCTTCC----CHHHHHHHH
T ss_pred eEEEeccCCC----CHHHHHHHH
Confidence 5779999996 344454444
No 10
>d1wqlb1 d.17.4.4 (B:5-186) Small subunit of cumene dioxygenase CumA2 {Pseudomonas fluorescens [TaxId: 294]}
Probab=13.48 E-value=33 Score=24.51 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=13.5
Q ss_pred CCceEEEEEEecCCCCcee
Q psy4885 36 NKERELIILRSDDGSTWKE 54 (187)
Q Consensus 36 g~~REivVlrSd~G~~W~e 54 (187)
|.+++..+ |+++|+.||=
T Consensus 144 g~y~d~~~-r~~dG~~wri 161 (182)
T d1wqlb1 144 GERRDILL-RVSDGLGFKI 161 (182)
T ss_dssp EEEEEEEE-ECSSTTSEEE
T ss_pred EEEEEEEE-EeCCCCeEEE
Confidence 66677664 8888999973
Done!