RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4885
(187 letters)
>gnl|CDD|189721 pfam00791, ZU5, ZU5 domain. Domain present in ZO-1 and Unc5-like
netrin receptors Domain of unknown function.
Length = 103
Score = 72.7 bits (179), Expect = 4e-17
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGS 50
E E L S ++ GP G KFL PVI+ VPH A LR+ ER +I L++ G
Sbjct: 55 EEGETLLSPVVMCGPPGLKFLKPVILTVPHCAELRS-ERWIIQLKTQSGE 103
Score = 28.0 bits (63), Expect = 1.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 138 VSPIVSIEPRRRKFHKPITLTIP 160
+SP+V P KF KP+ LT+P
Sbjct: 61 LSPVVMCGPPGLKFLKPVILTVP 83
>gnl|CDD|128514 smart00218, ZU5, Domain present in ZO-1 and Unc5-like netrin
receptors. Domain of unknown function.
Length = 104
Score = 70.8 bits (174), Expect = 2e-16
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 1 MESEALASRILELGPAGAKFLGPVIIEVPHFASLRNKERELIILRSDDGS 50
E E L S ++E GP GA FL PVI+EVPH ASLR ++ E+++LRS++G
Sbjct: 55 EEGETLLSPVVECGPHGALFLRPVILEVPHCASLRPRDWEIVLLRSENGG 104
Score = 26.5 bits (59), Expect = 4.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 115 PEGGVAQP--------IPSELVTK--LLGNRVAVSPIVSIEPRRRKFHKPITLTIP 160
P G + Q + L T L +SP+V P F +P+ L +P
Sbjct: 28 PPGAIPQGTRYTCYLVVHKTLSTPPPLEEGETLLSPVVECGPHGALFLRPVILEVP 83
>gnl|CDD|214740 smart00602, VPS10, VPS10 domain.
Length = 612
Score = 30.5 bits (69), Expect = 0.50
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 22 GPVIIEVPHFASLRNKERELIILRSDDGSTWKEHKLDASEEAVQEVLNESFPGEELRQL- 80
G +I+ + + N + +D+G TWK + ++ V+ +L E G L
Sbjct: 403 GGIIVAIEY-----NSPTNELKYSTDEGKTWKTYTFTSTPVFVKGLLTEP-GGSTLVFTL 456
Query: 81 --EDLHTSRIVRILTVDF 96
+ T+DF
Sbjct: 457 FGFTKERGSSWSLYTIDF 474
>gnl|CDD|222987 PHA03103, PHA03103, double-strand RNA-binding protein; Provisional.
Length = 183
Score = 29.3 bits (66), Expect = 0.89
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 42 IILRSDDGSTWKEHKLDASEEAVQEVLNES 71
I + GST KE K +A++ A+ ++LN
Sbjct: 150 IKFKPAIGSTKKEAKNNAAKLAMDKILNYV 179
>gnl|CDD|237468 PRK13684, PRK13684, Ycf48-like protein; Provisional.
Length = 334
Score = 27.6 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 43 ILRSDDG-STWKEHKLDASEEAVQEVLNESFPGEE 76
+L ++DG TW+E LD EE + +++ SF G+E
Sbjct: 68 LLETNDGGETWEERSLDLPEENFR-LISISFKGDE 101
>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization
(Ras-dva) family. Ras-dva subfamily. Ras-dva (Ras -
dorsal-ventral anterior localization) subfamily consists
of a set of proteins characterized only in Xenopus
leavis, to date. In Xenopus Ras-dva expression is
activated by the transcription factor Otx2 and begins
during gastrulation throughout the anterior ectoderm.
Ras-dva expression is inhibited in the anterior neural
plate by factor Xanf1. Downregulation of Ras-dva results
in head development abnormalities through the inhibition
of several regulators of the anterior neural plate and
folds patterning, including Otx2, BF-1, Xag2, Pax6,
Slug, and Sox9. Downregulation of Ras-dva also
interferes with the FGF-8a signaling within the anterior
ectoderm. Most Ras proteins contain a lipid modification
site at the C-terminus, with a typical sequence motif
CaaX, where a = an aliphatic amino acid and X = any
amino acid. Lipid binding is essential for membrane
attachment, a key feature of most Ras proteins.
Length = 197
Score = 27.5 bits (61), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 71 SFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRLRQEIHAV 113
SFP +R+L + + +VD P+ F V RLR+EI V
Sbjct: 59 SFPA--MRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEV 99
>gnl|CDD|182057 PRK09741, PRK09741, hypothetical protein; Provisional.
Length = 148
Score = 26.2 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 56 KLDASEEAVQEVLNESFPGEELRQLEDLHTSRIVRILTV 94
K A+ V+E L ++ G E +L D+ T I I ++
Sbjct: 64 KTFATPAWVKEALKHTYLGYETVELVDVVTGEITTIQSL 102
>gnl|CDD|165588 PHA03344, PHA03344, US22 family homolog; Provisional.
Length = 672
Score = 26.5 bits (58), Expect = 9.6
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 27/93 (29%)
Query: 45 RSDD---------GSTWKEHKLDASEEAVQEV----LNESFPGEELRQLEDLHTS----- 86
SDD G WK L S+EAV+E L + F LR + H +
Sbjct: 140 LSDDEDAAGAYVQGHPWKSSALTVSKEAVEEHEKKKLAQRFFALTLRDFKSFHLALSFNP 199
Query: 87 -----RIV----RILTVDFPQYFAVVSRLRQEI 110
I + LT+ FP+++ ++ + EI
Sbjct: 200 GEIAAAIRHLLGKALTLRFPEHWYLIPQPMNEI 232
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,791,915
Number of extensions: 942216
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 26
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)