RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4885
         (187 letters)



>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli
           [TaxId: 562]}
          Length = 81

 Score = 25.9 bits (57), Expect = 1.0
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 94  VDFPQYFAVVSRLRQEIHAVGPEGGVA 120
           +D P Y      ++  I  V     ++
Sbjct: 4   MDMPGYRKAFKAIKSLITDVSETHKIS 30


>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase
           {Ralstonia eutropha [TaxId: 106590]}
          Length = 280

 Score = 27.5 bits (60), Expect = 1.1
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 63  AVQEVLNESFPGEELRQLEDLHTSRIVR--------ILTVDFPQYFAVVSRLRQEIHAVG 114
                       E LR  ED H   +          +L   FP+ +   +R+  +I    
Sbjct: 26  FYPADFGAVVAPERLRGGEDTHVDALWEAVPRVGGTLLAATFPRVYIDPNRMLDDIDPAQ 85

Query: 115 PEGGVAQPIPSELVTKLLGNRVAVSPIVSIEPRRRK 150
            EG    P+     T+L    +  +   +     RK
Sbjct: 86  LEGPWPTPLAPGEKTRLGYGLIWSNVDAATPIYDRK 121


>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
           {Foot-and-mouth disease virus FMDV [TaxId: 12110]}
          Length = 199

 Score = 26.6 bits (58), Expect = 1.7
 Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 110 IHAVGPEG-GVAQPIPSELVTKLLGN 134
            H+ G  G G    +   ++ K+  +
Sbjct: 174 THSAGGNGVGYCSCVSRSMLQKMKAH 199


>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
           {Bacteriophage PHI-6 [TaxId: 10879]}
          Length = 664

 Score = 26.5 bits (58), Expect = 2.2
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 49  GSTWKEHKLDASEEAVQE----------VLNESFPGEELRQLEDLHTSRIVRILTVDF-P 97
             T+        EE V+E            +  +PG       DL    ++ +    +  
Sbjct: 299 AYTFHHTTRLNKEEKVKEWSLCVATDVSDHDTFWPGWLR----DLICDELLNMGYAPWWV 354

Query: 98  QYFAVVSRLRQEIHAVGPEGG 118
           + F    +L   + A  PE G
Sbjct: 355 KLFETSLKLPVYVGAPAPEQG 375


>d1ckqa_ c.52.1.1 (A:) Restriction endonuclease EcoRI {Escherichia
           coli [TaxId: 562]}
          Length = 261

 Score = 24.5 bits (53), Expect = 8.5
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 49  GSTWKEHKLDASE--EAVQEVLNESFPGEELRQLEDLHTSRIVRILTVDFPQYFAVVSRL 106
           G   K H L   E  + V++ L+  +P    R  + +  + I   L    P        L
Sbjct: 9   GDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDP-------DL 61

Query: 107 RQEIH----AVGPEGGV 119
              +     ++ P+GG+
Sbjct: 62  GGTLFVSNSSIKPDGGI 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 672,261
Number of extensions: 30777
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 9
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)