BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4887
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
          Protein Causative In Wolfram Syndrome 2
 pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
          Protein Causative In Wolfram Syndrome 2
          Length = 83

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 37 INPNIQKSNSKVVNVINIEDIADT-LALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLI 95
          IN  IQK N KVVN INIED++ T  A CRCWRSKTFP CDGSH +HN+ TGDNVGP+++
Sbjct: 19 INLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLIL 78

Query: 96 KR 97
          K+
Sbjct: 79 KK 80


>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
 pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
          Length = 81

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+ D    CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 72

Query: 94 LIKR 97
          +IK+
Sbjct: 73 IIKK 76


>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
          Displays Conformational Flexibility In Its N-Terminal
          Cytoplasmic Tethering Domain
 pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
          Displays Conformational Flexibility In Its N-Terminal
          Cytoplasmic Tethering Domain
          Length = 80

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+ D    CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 73

Query: 94 LIKR 97
          +IK+
Sbjct: 74 IIKK 77


>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
          Length = 84

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+ D    CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 11 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 70

Query: 94 LIKR 97
          +IK+
Sbjct: 71 IIKK 74


>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel
          [2fe- 2s] Cluster Coordination
          Length = 79

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+ D    CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 72

Query: 94 LIKR 97
          +IK+
Sbjct: 73 IIKK 76


>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
          Membrane Protein Stabilized By Pioglitazone
 pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
          Membrane Protein Stabilized By Pioglitazone
          Length = 76

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+ D    CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69

Query: 94 LIKR 97
          +IK+
Sbjct: 70 IIKK 73


>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant
          In Which Gly 66 Are Asp 67 Are Both Replaced With Ala
          Residues
 pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant
          In Which Gly 66 Are Asp 67 Are Both Replaced With Ala
          Residues
          Length = 76

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+A     CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69

Query: 94 LIKR 97
          +IK+
Sbjct: 70 IIKK 73


>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With
          Met 62 Replaced By A Gly
 pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With
          Met 62 Replaced By A Gly
          Length = 76

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 47/64 (73%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  + ED+ D    CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 10 KAMINLHIQKDNPKIVHAFDGEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69

Query: 94 LIKR 97
          +IK+
Sbjct: 70 IIKK 73


>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
          Ala Inserted Between Asp 67 And Lys 68
 pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
          Ala Inserted Between Asp 67 And Lys 68
          Length = 77

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLAL-CRCWRSKTFPKCDGSHAQHNQCTGDNVGP 92
          K  IN +IQK N K+V+  ++ED+ D  A+ CRCWRSK FP CDG+H +HN+ TGDNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 69

Query: 93 VLIKR 97
          ++IK+
Sbjct: 70 LIIKK 74


>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
 pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With
          Asp 67 Replaced By A Gly
          Length = 76

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 47/64 (73%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+      CRCWRSK FP CDG+H +HN+ TGDNVGP+
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPL 69

Query: 94 LIKR 97
          +IK+
Sbjct: 70 IIKK 73


>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
          Replaced With Cys
 pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
          Replaced With Cys
          Length = 79

 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 47/64 (73%)

Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          K  IN +IQK N K+V+  ++ED+ D    CRCWRSK FP CDG+  +HN+ TGDNVGP+
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPL 73

Query: 94 LIKR 97
          +IK+
Sbjct: 74 IIKK 77


>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
 pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
          Length = 83

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 35 GHINPNIQKSNSKVVNVINIEDIADTLA-LCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          G INP I+K+  KVV+ + + +++  +   CRCWRS TFP CDGSH +HN+  GDNVGP+
Sbjct: 19 GGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPL 78

Query: 94 LIKR 97
          L+K+
Sbjct: 79 LLKK 82


>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
 pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
          Length = 83

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 35 GHINPNIQKSNSKVVNVINIEDIADTLA-LCRCWRSKTFPKCDGSHAQHNQCTGDNVGPV 93
          G INP I+K+  KVV+ + + +++  +   CRCWRS TFP CDGS  +HN+  GDNVGP+
Sbjct: 19 GGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPL 78

Query: 94 LIKR 97
          L+K+
Sbjct: 79 LLKK 82


>pdb|3TBO|A Chain A, Crystal Structure Of A Type 3 Cdgsh Iron-Sulfur Protein
          Length = 60

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 60 TLALCRCWRSKTFPKCDGSHAQ 81
           + LCRC  S + P CDG+HA+
Sbjct: 21 AIYLCRCGHSGSKPHCDGTHAK 42


>pdb|2JEM|A Chain A, Native Family 12 Xyloglucanase From Bacillus Licheniformis
 pdb|2JEM|B Chain B, Native Family 12 Xyloglucanase From Bacillus Licheniformis
          Length = 261

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 2   TTNSPLADFVKYVPYALVLGGISYGVYK-VISPKGHINPN----IQKSNSKVVNVINIED 56
           T   P   +V+ V     +GG S+ VYK  I   G    N    I+ +N++  N +NI D
Sbjct: 163 TNAGPAGSYVETVS----IGGHSWKVYKGYIDAGGGKGWNVFSFIRTANTQSAN-LNIRD 217

Query: 57  IADTLALCRCWRSKT 71
             + LA  + W SKT
Sbjct: 218 FTNYLADSKQWLSKT 232


>pdb|2JEN|A Chain A, Family 12 Xyloglucanase From Bacillus Licheniformis In
           Complex With Ligand
          Length = 261

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 2   TTNSPLADFVKYVPYALVLGGISYGVYK-VISPKGHINPN----IQKSNSKVVNVINIED 56
           T   P   +V+ V     +GG S+ VYK  I   G    N    I+ +N++  N +NI D
Sbjct: 163 TNAGPAGSYVETVS----IGGHSWKVYKGYIDAGGGKGWNVFSFIRTANTQSAN-LNIRD 217

Query: 57  IADTLALCRCWRSKT 71
             + LA  + W SKT
Sbjct: 218 FTNYLADSKQWLSKT 232


>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
 pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
           Salmonella Typhimurium
          Length = 404

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%)

Query: 2   TTNSPLADFVKYVPYALVLGGISYGVYKVISPKGHINPNIQKSNSKVVNVINIEDIADTL 61
           T +   AD  K V    V+ G  + VY +  P+  +   + K  S+    + +  IAD L
Sbjct: 266 TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRL 325

Query: 62  ALCRCWRSKTFPKCD 76
                   K FP  D
Sbjct: 326 ETVMWETKKMFPNLD 340


>pdb|3TBN|A Chain A, Crystal Structure Of A Miner2 Homolog: A Type 6 Cdgsh
          Iron-Sulfur Protein
          Length = 87

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 56 DIADTLALCRCWRSKTFPKCDGSH 79
          +   T   C C RSK  P CDGSH
Sbjct: 25 EAGKTYHWCACGRSKAQPFCDGSH 48



 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 45 NSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSH 79
           + +  V    D A T   C C  SK  P CDG+H
Sbjct: 50 GTGLAPVAYTPDKAGTAYFCGCKASKAPPLCDGTH 84


>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
           Prophenoloxidase Activating Factor-I In A Zymogen Form
          Length = 278

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 49  VNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLIKR 97
           V V++ E  A T       R ++   C G     + C GD+ GP+L +R
Sbjct: 189 VPVVHAEQCAKTFGAAGV-RVRSSQLCAGGEKAKDSCGGDSGGPLLAER 236


>pdb|3TBM|A Chain A, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein.
 pdb|3TBM|B Chain B, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein
          Length = 69

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 63 LCRCWRSKTFPKCDGSHAQ 81
          LCRC  S   P CDGSH +
Sbjct: 43 LCRCGHSLNKPFCDGSHKR 61


>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
 pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
          Length = 270

 Score = 25.8 bits (55), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 31  ISPKGH----INPNIQKSNSKVVNVINIEDIADTLAL 63
           ISP GH    ++    K  SKVVN+I +   ADT+ L
Sbjct: 119 ISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTL 155


>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
 pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
          Length = 675

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 21  GGISYGVYKVISPKGHINPNI 41
            G+SYG++K   P+G   P I
Sbjct: 178 AGVSYGIFKTDLPEGEEKPRI 198


>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
           Selenomethionine- Labeled Crystals
 pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
           Selenomethionine- Labeled Crystals
          Length = 675

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 21  GGISYGVYKVISPKGHINPNI 41
            G+SYG++K   P+G   P I
Sbjct: 178 AGVSYGIFKTDLPEGEEKPRI 198


>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
          Length = 668

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 21  GGISYGVYKVISPKGHINPNI 41
            G+SYG++K   P+G   P I
Sbjct: 180 AGVSYGIFKTDLPEGEEKPRI 200


>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
 pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
          Length = 658

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 21  GGISYGVYKVISPKGHINPNI 41
            G+SYG++K   P+G   P I
Sbjct: 177 AGVSYGIFKTDLPEGEEKPRI 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,014,056
Number of Sequences: 62578
Number of extensions: 103858
Number of successful extensions: 288
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 26
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)