Query psy4887
Match_columns 100
No_of_seqs 126 out of 637
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:20:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fnv_A CDGSH iron sulfur domai 100.0 6.3E-34 2.1E-38 191.9 2.5 74 26-99 2-82 (83)
2 4ezf_A Mitoneet, CDGSH iron-su 100.0 6.3E-33 2.2E-37 184.9 3.1 67 34-100 10-77 (77)
3 3s2r_A AT5G51720/MIO24_14; red 100.0 1.7E-31 5.7E-36 180.0 1.3 64 34-97 18-82 (83)
4 3ew0_A Mitoneet, CDGSH iron su 100.0 5.8E-30 2E-34 171.7 3.0 67 34-100 14-80 (80)
5 3tbo_A Zinc finger, CDGSH-type 99.6 6.9E-16 2.4E-20 98.6 1.7 43 39-86 5-47 (60)
6 3tbm_A Putative uncharacterize 99.5 3.8E-15 1.3E-19 97.2 2.8 49 37-85 8-65 (69)
7 3tbn_A Putative uncharacterize 99.5 1.4E-14 4.9E-19 98.2 5.5 54 36-99 9-62 (87)
8 3tbn_A Putative uncharacterize 99.5 1.8E-14 6.1E-19 97.8 2.2 55 21-82 33-87 (87)
9 2j5h_A Teratocarcinoma-derived 61.6 1.7 5.9E-05 25.4 0.1 20 58-77 15-41 (41)
10 3bpo_A Interleukin 13; IL4, IL 29.3 15 0.00052 26.0 0.6 13 68-80 22-34 (127)
11 1mm0_A Termicin; termite, cyte 25.9 11 0.00037 21.5 -0.5 12 73-84 22-33 (36)
12 1p1p_A AA-conotoxin PIVA; neur 22.4 31 0.0011 18.1 0.9 12 66-77 14-25 (26)
13 2jx1_A Myelin transcription fa 20.1 31 0.0011 18.8 0.6 12 72-83 6-18 (31)
No 1
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.3e-34 Score=191.94 Aligned_cols=74 Identities=57% Similarity=1.002 Sum_probs=64.0
Q ss_pred eEEeeecC------CCccccccccccceEEEeeeccCCC-ceEEEEeeCCCCCCccccCCCcCCcccCCCcccceEEEec
Q psy4887 26 GVYKVISP------KGHINPNIQKSNSKVVNVINIEDIA-DTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLIKRN 98 (100)
Q Consensus 26 ~~~~~f~~------~~~vN~~I~k~~pkvv~~~~~e~~~-~~~~~CrCg~S~~~PfCDGSH~~~~~~~gdnvgPl~~~~~ 98 (100)
++|++|++ .+++|..|++++||+|+.+|+|+++ ++++|||||+|+|+|||||||.++++++|||||||+|++|
T Consensus 2 ~~y~~~~~~~~~~k~~~vN~~I~k~~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k 81 (83)
T 3fnv_A 2 SHMRPFLPKKKQQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 81 (83)
T ss_dssp --------------CCCSCSSSCTTSSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECC
T ss_pred CcchhhccccccCcccccCcceecCCCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEec
Confidence 35677776 4889999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred c
Q psy4887 99 A 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 82 ~ 82 (83)
T 3fnv_A 82 E 82 (83)
T ss_dssp C
T ss_pred c
Confidence 6
No 2
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.97 E-value=6.3e-33 Score=184.89 Aligned_cols=67 Identities=54% Similarity=1.047 Sum_probs=65.3
Q ss_pred CCccccccccccceEEEeeeccCCCc-eEEEEeeCCCCCCccccCCCcCCcccCCCcccceEEEeccC
Q psy4887 34 KGHINPNIQKSNSKVVNVINIEDIAD-TLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLIKRNAA 100 (100)
Q Consensus 34 ~~~vN~~I~k~~pkvv~~~~~e~~~~-~~~~CrCg~S~~~PfCDGSH~~~~~~~gdnvgPl~~~~~~~ 100 (100)
++++|..|++++||+|+.+|+|++++ +++|||||+|+++|||||||.++++++|||||||+++++++
T Consensus 10 ~~~vN~~i~kd~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~~ 77 (77)
T 4ezf_A 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKET 77 (77)
T ss_dssp TTCSCSSSCTTSSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBCC
T ss_pred ccccccceecCCCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEeccC
Confidence 78999999999999999999999998 99999999999999999999999999999999999999986
No 3
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.96 E-value=1.7e-31 Score=180.00 Aligned_cols=64 Identities=50% Similarity=1.047 Sum_probs=60.7
Q ss_pred CCccccccccccceEEEeeeccCCC-ceEEEEeeCCCCCCccccCCCcCCcccCCCcccceEEEe
Q psy4887 34 KGHINPNIQKSNSKVVNVINIEDIA-DTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLIKR 97 (100)
Q Consensus 34 ~~~vN~~I~k~~pkvv~~~~~e~~~-~~~~~CrCg~S~~~PfCDGSH~~~~~~~gdnvgPl~~~~ 97 (100)
.+++|..|+|++||+|+.+|+||++ .+++|||||+|+++|||||||.++|+++|||||||+|++
T Consensus 18 g~~vN~~I~K~~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk 82 (83)
T 3s2r_A 18 GGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKK 82 (83)
T ss_dssp --CCCSSTTTTSSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEEC
T ss_pred cCccCchhhcCCCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEec
Confidence 4789999999999999999999998 799999999999999999999999999999999999987
No 4
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.95 E-value=5.8e-30 Score=171.65 Aligned_cols=67 Identities=54% Similarity=1.047 Sum_probs=63.7
Q ss_pred CCccccccccccceEEEeeeccCCCceEEEEeeCCCCCCccccCCCcCCcccCCCcccceEEEeccC
Q psy4887 34 KGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLIKRNAA 100 (100)
Q Consensus 34 ~~~vN~~I~k~~pkvv~~~~~e~~~~~~~~CrCg~S~~~PfCDGSH~~~~~~~gdnvgPl~~~~~~~ 100 (100)
++++|..|.+++|++|+.+++|+++++++|||||+|+|+|||||||.++++++|||||||+|+++++
T Consensus 14 ~~~vni~I~k~gP~~V~~~~led~~~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~~~ 80 (80)
T 3ew0_A 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKET 80 (80)
T ss_dssp CCCSCSSSCTTSSSEEEEECGGGCCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECCC-
T ss_pred CCccCeEEeCCCCEEEEeeccccCCCeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEeccC
Confidence 6779999999999999999999888999999999999999999999999999999999999999975
No 5
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.55 E-value=6.9e-16 Score=98.60 Aligned_cols=43 Identities=30% Similarity=0.515 Sum_probs=33.9
Q ss_pred cccccccceEEEeeeccCCCceEEEEeeCCCCCCccccCCCcCCcccC
Q psy4887 39 PNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCT 86 (100)
Q Consensus 39 ~~I~k~~pkvv~~~~~e~~~~~~~~CrCg~S~~~PfCDGSH~~~~~~~ 86 (100)
..+..++|..|+ ++ ++.++|||||+|+|+|||||||+..+++.
T Consensus 5 I~v~~ngP~~v~---~e--~~~~~lC~CG~S~n~PFCDGSHk~~~f~~ 47 (60)
T 3tbo_A 5 IRAIENGPYEVK---IG--GRAIYLCRCGHSGSKPHCDGTHAKVGFKA 47 (60)
T ss_dssp EEECTTSCEEEE---C-----CEEECCSSCCTTTTBCCSHHHHHTCCC
T ss_pred EEEeCCCCEEEE---EC--CcEEEEEECCCCCCCCccCCcCCCCcccc
Confidence 466788898877 34 46789999999999999999999877653
No 6
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.52 E-value=3.8e-15 Score=97.20 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=37.9
Q ss_pred cccccccccceEEEe-eeccC--------CCceEEEEeeCCCCCCccccCCCcCCccc
Q psy4887 37 INPNIQKSNSKVVNV-INIED--------IADTLALCRCWRSKTFPKCDGSHAQHNQC 85 (100)
Q Consensus 37 vN~~I~k~~pkvv~~-~~~e~--------~~~~~~~CrCg~S~~~PfCDGSH~~~~~~ 85 (100)
+..+|.+++|..|.. +.+++ ....++|||||+|+|+|||||||+..+++
T Consensus 8 ~~I~v~~nGPl~V~G~v~i~~~dG~~~~~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~ 65 (69)
T 3tbm_A 8 VVITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHKRVEFD 65 (69)
T ss_dssp CEEEECTTSCEEEESSCEEEESSCCEECCBTTEEEECCSSCCSSTTBCCSHHHHTTCC
T ss_pred eEEEEeCCCCEEEECCCeEECCCCCEEeeCCCEEEEeeCCCCCCCCccCCCcCCCCcc
Confidence 346778888888874 22221 24679999999999999999999998875
No 7
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.51 E-value=1.4e-14 Score=98.23 Aligned_cols=54 Identities=37% Similarity=0.620 Sum_probs=43.2
Q ss_pred ccccccccccceEEEeeeccCCCceEEEEeeCCCCCCccccCCCcCCcccCCCcccceEEEecc
Q psy4887 36 HINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNVGPVLIKRNA 99 (100)
Q Consensus 36 ~vN~~I~k~~pkvv~~~~~e~~~~~~~~CrCg~S~~~PfCDGSH~~~~~~~gdnvgPl~~~~~~ 99 (100)
+..+.|...+|.+++. |+ ++.|+||+||+|+|+|||||||+. .++.|+.++.++
T Consensus 9 ~~~~~~~~~~P~~v~l---e~-g~~~~~C~CG~S~~~PfCDGSH~~------~~f~P~~f~~e~ 62 (87)
T 3tbn_A 9 HTDPVIAQKAPYPVTV---EA-GKTYHWCACGRSKAQPFCDGSHKG------TGLAPVAYTPDK 62 (87)
T ss_dssp TTSCCCSCSSCEEEEE---CT-TCCEEECSSSCCSSTTBCCSTTTT------TTCCCEEECCSS
T ss_pred cCCcccccCCCEEEEe---CC-CCEEEEeeCCCCCCCCCcCCcccc------CCccceEEEECC
Confidence 3456778888887664 43 678999999999999999999994 467899887654
No 8
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.45 E-value=1.8e-14 Score=97.76 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=43.2
Q ss_pred eeeEeeEEeeecCCCccccccccccceEEEeeeccCCCceEEEEeeCCCCCCccccCCCcCC
Q psy4887 21 GGISYGVYKVISPKGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQH 82 (100)
Q Consensus 21 ~~~gY~~~~~f~~~~~vN~~I~k~~pkvv~~~~~e~~~~~~~~CrCg~S~~~PfCDGSH~~~ 82 (100)
-.+|++..+||||+++....++ |.. |.+|+ .++++||+|++|+|.|||||||+++
T Consensus 33 C~CG~S~~~PfCDGSH~~~~f~---P~~---f~~e~-~~~~~lC~CK~T~n~PfCDGsH~~L 87 (87)
T 3tbn_A 33 CACGRSKAQPFCDGSHKGTGLA---PVA---YTPDK-AGTAYFCGCKASKAPPLCDGTHKTL 87 (87)
T ss_dssp CSSSCCSSTTBCCSTTTTTTCC---CEE---ECCSS-CEEEEECSSSCCSSTTBCCSGGGTC
T ss_pred eeCCCCCCCCCcCCccccCCcc---ceE---EEECC-CcEEEEecCCCCCCCCccCCcCCcC
Confidence 3678888899999988775432 432 34444 6889999999999999999999863
No 9
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=61.63 E-value=1.7 Score=25.44 Aligned_cols=20 Identities=40% Similarity=1.152 Sum_probs=14.5
Q ss_pred CceEEEEeeCCC-------CCCccccC
Q psy4887 58 ADTLALCRCWRS-------KTFPKCDG 77 (100)
Q Consensus 58 ~~~~~~CrCg~S-------~~~PfCDG 77 (100)
-..-.+||||.. ...|=|||
T Consensus 15 ~k~C~LCRC~~G~LhCfp~~~~~~CD~ 41 (41)
T 2j5h_A 15 PKKCSLCRCWHGQLHCLPQTFLPGCDX 41 (41)
T ss_dssp SCCCCCCCCCSSSCCSCCSSSSTTCC-
T ss_pred ecCceEEEeecCceEEcccccCCCCCC
Confidence 366789999964 56778887
No 10
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=29.26 E-value=15 Score=25.96 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=8.3
Q ss_pred CCCCCccccCCCc
Q psy4887 68 RSKTFPKCDGSHA 80 (100)
Q Consensus 68 ~S~~~PfCDGSH~ 80 (100)
+..+.|+|+||-.
T Consensus 22 q~qK~~LCNGSMV 34 (127)
T 3bpo_A 22 QNQKAPLCNGSMV 34 (127)
T ss_dssp C---CCSGGGCCE
T ss_pred ccccCCccCCceE
Confidence 5567899999865
No 11
>1mm0_A Termicin; termite, cytein-rich, antimicrobial peptide, insect defensin, CSAB motif, antimicrobial protein; NMR {Pseudacanthotermes spiniger} SCOP: g.3.7.4
Probab=25.88 E-value=11 Score=21.47 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=8.0
Q ss_pred ccccCCCcCCcc
Q psy4887 73 PKCDGSHAQHNQ 84 (100)
Q Consensus 73 PfCDGSH~~~~~ 84 (100)
-|||||.-..-+
T Consensus 22 AyCdgs~C~CVf 33 (36)
T 1mm0_A 22 AFCDRSQCKCVF 33 (36)
T ss_dssp EEEETTEEEEEE
T ss_pred eeecCCeeEEEe
Confidence 588998765433
No 12
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=22.39 E-value=31 Score=18.12 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=8.4
Q ss_pred eCCCCCCccccC
Q psy4887 66 CWRSKTFPKCDG 77 (100)
Q Consensus 66 Cg~S~~~PfCDG 77 (100)
|+-....||||-
T Consensus 14 c~c~~rp~yc~~ 25 (26)
T 1p1p_A 14 CSCKDRPSYCGQ 25 (26)
T ss_dssp TTSTTCCGGGCC
T ss_pred cccCCCCCccCc
Confidence 334488999984
No 13
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=20.15 E-value=31 Score=18.80 Aligned_cols=12 Identities=58% Similarity=1.024 Sum_probs=8.2
Q ss_pred CccccCC-CcCCc
Q psy4887 72 FPKCDGS-HAQHN 83 (100)
Q Consensus 72 ~PfCDGS-H~~~~ 83 (100)
.|.|||+ |..-+
T Consensus 6 tpGC~g~GH~~g~ 18 (31)
T 2jx1_A 6 TPGCDGSGHITGN 18 (31)
T ss_dssp CTTCCSSCCSSSS
T ss_pred CCCccccceeccc
Confidence 6999994 55443
Done!