Query psy4887
Match_columns 100
No_of_seqs 126 out of 637
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 20:20:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4887.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4887hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ha1 g.3.11.7 (A:1-39) Crip 36.0 3.1 0.00022 22.7 -0.3 14 57-70 13-26 (39)
2 d1b0xa_ a.60.1.2 (A:) EphA4 re 28.8 9.8 0.00072 21.5 1.2 13 2-14 2-14 (72)
3 d1dkca_ g.3.4.2 (A:) Antifunga 22.0 18 0.0013 19.2 1.3 14 65-78 9-22 (38)
4 d1v54g_ f.23.2.1 (G:) Mitochon 19.9 20 0.0014 21.9 1.4 15 68-82 56-70 (84)
5 d1oxja1 a.60.1.2 (A:594-655) R 17.6 24 0.0017 19.6 1.2 14 1-14 2-15 (62)
6 d1yoba1 c.23.5.1 (A:1-179) Fla 16.4 33 0.0024 22.5 2.0 23 58-80 88-112 (179)
7 d1d0qa_ g.41.3.2 (A:) Zinc-bin 15.6 32 0.0023 20.6 1.6 18 59-82 32-49 (102)
8 d1ywsa1 g.41.17.1 (A:1-82) Dip 15.0 22 0.0016 21.6 0.6 10 59-68 20-29 (82)
9 d2fd6u2 g.7.1.3 (U:189-275) Ur 14.5 25 0.0018 21.8 0.8 27 58-87 45-71 (87)
10 d1sddb1 b.6.1.3 (B:1657-1723) 12.6 28 0.002 19.9 0.6 22 78-99 35-57 (67)
No 1
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.96 E-value=3.1 Score=22.73 Aligned_cols=14 Identities=36% Similarity=1.229 Sum_probs=11.0
Q ss_pred CCceEEEEeeCCCC
Q psy4887 57 IADTLALCRCWRSK 70 (100)
Q Consensus 57 ~~~~~~~CrCg~S~ 70 (100)
+.++-++||||+..
T Consensus 13 ~~k~CslCrC~~G~ 26 (39)
T d2j5ha1 13 LPKKCSLCRCWHGQ 26 (39)
T ss_dssp SSCCCCCCCCCSSS
T ss_pred ecccceEEEeccCc
Confidence 35778999999864
No 2
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.85 E-value=9.8 Score=21.45 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=11.0
Q ss_pred CCCcchhhhhhhh
Q psy4887 2 TTNSPLADFVKYV 14 (100)
Q Consensus 2 ~~~~~~~dwl~l~ 14 (100)
|+..+|.|||.-+
T Consensus 2 s~v~sV~~WL~~l 14 (72)
T d1b0xa_ 2 SAVVSVGDWLQAI 14 (72)
T ss_dssp CSSCCHHHHHHHT
T ss_pred CchhhHHHHHHHC
Confidence 7889999999765
No 3
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=21.99 E-value=18 Score=19.18 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=12.0
Q ss_pred eeCCCCCCccccCC
Q psy4887 65 RCWRSKTFPKCDGS 78 (100)
Q Consensus 65 rCg~S~~~PfCDGS 78 (100)
||-.|...|||=.+
T Consensus 9 rcn~~~gppyccs~ 22 (38)
T d1dkca_ 9 RCNASAGPPYCCSS 22 (38)
T ss_dssp EECTTSCCCCCSSS
T ss_pred eecccCCCCceech
Confidence 79999999999654
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.92 E-value=20 Score=21.92 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=12.9
Q ss_pred CCCCCccccCCCcCC
Q psy4887 68 RSKTFPKCDGSHAQH 82 (100)
Q Consensus 68 ~S~~~PfCDGSH~~~ 82 (100)
|+|+|||=||-|...
T Consensus 56 R~K~FpWGDG~~tLF 70 (84)
T d1v54g_ 56 RTKPFSWGDGNHTFF 70 (84)
T ss_dssp CSSCCSSTTSSSCTT
T ss_pred hccccCCCCCCcccc
Confidence 899999999988654
No 5
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}
Probab=17.62 E-value=24 Score=19.62 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.8
Q ss_pred CCCCcchhhhhhhh
Q psy4887 1 MTTNSPLADFVKYV 14 (100)
Q Consensus 1 ~~~~~~~~dwl~l~ 14 (100)
|+..+++.+||.-+
T Consensus 2 ~~g~~~v~~WL~~l 15 (62)
T d1oxja1 2 MVGMSGIGLWLKSL 15 (62)
T ss_dssp CTTCTTHHHHHHHT
T ss_pred CcchhHHHHHHHHC
Confidence 67889999999765
No 6
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=16.35 E-value=33 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.1
Q ss_pred CceEEEEeeCCCCCCc--cccCCCc
Q psy4887 58 ADTLALCRCWRSKTFP--KCDGSHA 80 (100)
Q Consensus 58 ~~~~~~CrCg~S~~~P--fCDGSH~ 80 (100)
+.+++++.+|-|...+ |||+...
T Consensus 88 g~~~avfGlGDs~~~~~~Fc~a~~~ 112 (179)
T d1yoba1 88 GKTVALFGLGDQVGYPENYLDALGE 112 (179)
T ss_dssp TCEEEEEEECCTTTCTTTTTHHHHH
T ss_pred CcEEEEEEecCCcccchhHHHHHHH
Confidence 5889999999998655 9998754
No 7
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.63 E-value=32 Score=20.60 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=12.4
Q ss_pred ceEEEEeeCCCCCCccccCCCcCC
Q psy4887 59 DTLALCRCWRSKTFPKCDGSHAQH 82 (100)
Q Consensus 59 ~~~~~CrCg~S~~~PfCDGSH~~~ 82 (100)
++.+.|+| |||+..|...
T Consensus 32 G~~~~~~C------Pfh~d~~~S~ 49 (102)
T d1d0qa_ 32 GRNYFGLC------PFHGEKTPSF 49 (102)
T ss_dssp TTEEEECC------SSSCCSSCCE
T ss_pred CCceEEec------cccCCCCcce
Confidence 45667888 8888766543
No 8
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.01 E-value=22 Score=21.63 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=7.2
Q ss_pred ceEEEEeeCC
Q psy4887 59 DTLALCRCWR 68 (100)
Q Consensus 59 ~~~~~CrCg~ 68 (100)
.-++-||||-
T Consensus 20 ~~~ypCrCGd 29 (82)
T d1ywsa1 20 MFTYPCPCGD 29 (82)
T ss_dssp EEEECCSSSS
T ss_pred EEEeccccCC
Confidence 4566799984
No 9
>d2fd6u2 g.7.1.3 (U:189-275) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.45 E-value=25 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=17.5
Q ss_pred CceEEEEeeCCCCCCccccCCCcCCcccCC
Q psy4887 58 ADTLALCRCWRSKTFPKCDGSHAQHNQCTG 87 (100)
Q Consensus 58 ~~~~~~CrCg~S~~~PfCDGSH~~~~~~~g 87 (100)
...+..=.|+ +.|+|-|+|..+++.+-
T Consensus 45 ~~s~~vRGCa---t~~~C~g~~~~~~f~t~ 71 (87)
T d2fd6u2 45 NQSYMVRGCA---TASMCQHAHLGDAFSMN 71 (87)
T ss_dssp TEEEEEEEEE---CGGGCC---CGGGGTCS
T ss_pred Cccceecccc---cCcCCCCCccccccccc
Confidence 3556666665 78999999999887653
No 10
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.64 E-value=28 Score=19.89 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=14.9
Q ss_pred CCcCCc-ccCCCcccceEEEecc
Q psy4887 78 SHAQHN-QCTGDNVGPVLIKRNA 99 (100)
Q Consensus 78 SH~~~~-~~~gdnvgPl~~~~~~ 99 (100)
||.... .....-+|||||.++.
T Consensus 35 sHv~~~~q~~~GL~G~liV~~~g 57 (67)
T d1sddb1 35 SAVNPEKDIHSGLIGPLLICRKG 57 (67)
T ss_dssp CCSSHHHHHTTTCEEEEEEECTT
T ss_pred cccchHHHhhCCceEEEEEcCCC
Confidence 555433 3356789999998764
Done!