RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4887
         (100 letters)



>gnl|CDD|197836 smart00704, ZnF_CDGSH, CDGSH-type zinc finger. Function unknown. 
          Length = 38

 Score = 52.7 bits (127), Expect = 4e-11
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 47 KVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHN 83
          K  + + +E      ALCRC RSK FP CDGSH +HN
Sbjct: 1  KRPDEVEVEK-RKKYALCRCGRSKNFPYCDGSHKKHN 36


>gnl|CDD|220203 pfam09360, zf-CDGSH, Iron-binding zinc finger CDGSH type.  The
          CDGSH-type zinc finger domain binds iron rather than
          zinc as a redox-active pH-labile 2Fe-2S cluster. The
          conserved sequence
          C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining
          feature of this family. The domain is oriented towards
          the cytoplasm and is tethered to the mitochondrial
          membrane by a more N-terminal domain found in higher
          vertebrates, MitoNEET_N, pfam10660. The domain forms a
          uniquely folded homo-dimer and spans the outer
          mitochondrial membrane, orienting the iron-binding
          residues towards the cytoplasm.
          Length = 34

 Score = 44.8 bits (107), Expect = 4e-08
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 52 INIEDIADTLALCRCWRSKTFPKCDGSHA 80
            +E    T ALCRC RSK  P CDGSH 
Sbjct: 6  YKVELEKKTYALCRCGRSKNQPFCDGSHK 34


>gnl|CDD|225904 COG3369, COG3369, Zinc finger domain containing protein
          (CDGSH-type) [Function unknown].
          Length = 78

 Score = 31.7 bits (72), Expect = 0.013
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 56 DIADTLALCRCWRSKTFPKCDGSHA 80
          D  +  ALCRC  S+  P CDG+H 
Sbjct: 26 DGDEQAALCRCGHSENKPFCDGTHK 50


>gnl|CDD|237159 PRK12651, PRK12651, putative monovalent cation/H+ antiporter
          subunit E; Reviewed.
          Length = 158

 Score = 26.7 bits (60), Expect = 1.7
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 5  SPLADFVKYVPY---ALVLGGISYGVYKVISPKGHINPNI 41
            +   +K VP     L+   I      V+ PK +I P I
Sbjct: 52 RRIYKLIKLVPIFLKELIKANI-DVAKIVLKPKLNIEPGI 90


>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
           transport and metabolism].
          Length = 808

 Score = 26.6 bits (59), Expect = 2.4
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 5/37 (13%)

Query: 3   TNSPLADFVKYVPYALVLGGISYGVYKVISPKGHINP 39
             S   D   +  YA    GI   V   I+P  H++ 
Sbjct: 155 KGSYYEDQ-DFFRYA----GIHRDVMLYITPNTHVDD 186


>gnl|CDD|185110 PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional.
          Length = 228

 Score = 25.9 bits (56), Expect = 4.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 16 YALVLGGISYGVYKVISPKGHINPNIQKSNSKVVNVINIE 55
          +A   GGI+ G  +VI P+G    ++   NS   NV  I+
Sbjct: 22 FAAQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQ 61


>gnl|CDD|217251 pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N
          domain.  Phosphoribosylglycinamide synthetase catalyzes
          the second step in the de novo biosynthesis of purine.
          The reaction catalyzed by Phosphoribosylglycinamide
          synthetase is the ATP- dependent addition of
          5-phosphoribosylamine to glycine to form
          5'phosphoribosylglycinamide. This domain is related to
          the N-terminal domain of biotin carboxylase/carbamoyl
          phosphate synthetase (see pfam00289).
          Length = 101

 Score = 24.7 bits (55), Expect = 6.7
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 38 NPNIQKSNSKVVNVINIEDIADTLALCR 65
          NP   +  +K VNVI+  D        +
Sbjct: 34 NPGTAQ-LAKNVNVIDETDFEALADFAK 60


>gnl|CDD|193296 pfam12821, DUF3815, Protein of unknown function (DUF3815).  This
          family of membrane proteins is functionally
          uncharacterized.
          Length = 130

 Score = 24.7 bits (55), Expect = 7.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 12 KYVPYALVLGGISYGVYKVISPKGH 36
          + + YA + G I + VY ++   G 
Sbjct: 22 RALLYAGLGGAIGWLVYLLLLHLGV 46


>gnl|CDD|224878 COG1967, COG1967, Predicted membrane protein [Function unknown].
          Length = 271

 Score = 25.0 bits (55), Expect = 7.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 11 VKYVPYALVLGGISYGVYKVISPK 34
          V  V YA++LG     VYK++   
Sbjct: 28 VNTVTYAIILGLAVILVYKLLKRL 51


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,831,553
Number of extensions: 374955
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 14
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)