RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4887
(100 letters)
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1;
mitochondrial outer membrane, 2Fe-2S proteins, isotopic
LABE highyield expression; 1.40A {Homo sapiens} PDB:
2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Length = 80
Score = 96.4 bits (239), Expect = 4e-28
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 29 KVISPKGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGD 88
K K IN +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGD
Sbjct: 9 KDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGD 68
Query: 89 NVGPVLIKRNAA 100
NVGP++IK+
Sbjct: 69 NVGPLIIKKKET 80
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein;
1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Length = 83
Score = 91.0 bits (225), Expect = 6e-26
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 27 VYKVISPKGHINPNIQKSNSKVVNVINIEDIADTLA-LCRCWRSKTFPKCDGSHAQHNQC 85
V G INP I+K+ KVV+ + + +++ + CRCWRS TFP CDGS +HN+
Sbjct: 11 VVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKA 70
Query: 86 TGDNVGPVLIKR 97
GDNVGP+L+K+
Sbjct: 71 NGDNVGPLLLKK 82
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 89.8 bits (222), Expect = 2e-25
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 29 KVISPKGHINPNIQKSNSKVVNVINIEDIA-DTLALCRCWRSKTFPKCDGSHAQHNQCTG 87
K IN IQK N KVVN INIED++ A CRCWRSKTFP CDGSH +HN+ TG
Sbjct: 11 KKQQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTG 70
Query: 88 DNVGPVLIKRN 98
DNVGP+++K+
Sbjct: 71 DNVGPLILKKK 81
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal
binding protein; HET: 2PE TLA; 1.80A {Ralstonia
solanacearum}
Length = 69
Score = 41.4 bits (97), Expect = 1e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 54 IEDIADTLALCRCWRSKTFPKCDGSHAQ 81
+ LCRC S P CDGSH +
Sbjct: 34 LPVEQGQAWLCRCGHSLNKPFCDGSHKR 61
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal
binding protein; 1.50A {Pyrobaculum calidifontis}
Length = 60
Score = 38.4 bits (89), Expect = 2e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 54 IEDIADTLALCRCWRSKTFPKCDGSHA 80
++ + LCRC S + P CDG+HA
Sbjct: 15 VKIGGRAIYLCRCGHSGSKPHCDGTHA 41
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2,
metal binding protein; 1.15A {Magnetospirillum
magneticum}
Length = 87
Score = 34.3 bits (78), Expect = 0.001
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 56 DIADTLALCRCWRSKTFPKCDGSHAQ 81
D A T C C SK P CDG+H
Sbjct: 61 DKAGTAYFCGCKASKAPPLCDGTHKT 86
Score = 29.7 bits (66), Expect = 0.062
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 35 GHINPNIQKSNSKVVN----VINIEDIADTLALCRCWRSKTFPKCDGSHAQHN 83
G + + ++ + + +E T C C RSK P CDGSH
Sbjct: 1 GSSHHHHHHTDPVIAQKAPYPVTVEA-GKTYHWCACGRSKAQPFCDGSHKGTG 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.069
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 28/72 (38%)
Query: 15 PYALVLGGISYGVYKVISPKGHINPNIQKSNSKVV---------------NVINIEDIAD 59
P AL L + ++ + KG I + +V++IE + +
Sbjct: 1734 P-ALTL--MEKAAFEDLKSKGLIPAD------ATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 60 TLALCRCWRSKT 71
+ R T
Sbjct: 1785 VVFY----RGMT 1792
Score = 28.9 bits (64), Expect = 0.23
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 24/94 (25%)
Query: 6 PLADFVKYVPYALVLGGI----SYGVY-KV--ISPKGHINPNIQKSNSKVVNVINIEDIA 58
P D++ +P + L G+ Y V K+ +P G + ++ + ++ A
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLV----TA 280
Query: 59 DTLALCRCWRSKTFPKCD----------GSHAQH 82
+A W S F G
Sbjct: 281 VAIAETDSWES--FFVSVRKAITVLFFIGVRCYE 312
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein
structure initiative; 1.50A {Agrobacterium tumefaciens}
SCOP: a.211.1.1
Length = 207
Score = 28.2 bits (62), Expect = 0.42
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 52 INIEDIADTLALCRCWRSKTFPKCDGSHAQH 82
+ I DIA LA W +T + AQH
Sbjct: 29 VEIADIAHGLARVARWNGQTRGDHAFTVAQH 59
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading
domain, transferase; HET: DNA U5P; 1.60A {Escherichia
coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
2xy8_A*
Length = 194
Score = 26.4 bits (59), Expect = 1.7
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 35 GHINPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFP 73
G ++ + + D+LA+ R K FP
Sbjct: 108 GFMDYEFSLLKRDIPKTNTFCKVTDSLAVAR----KMFP 142
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP:
c.92.2.2
Length = 321
Score = 25.4 bits (56), Expect = 3.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1 MTTNSPLADFVKYV 14
+TT + LAD V+ V
Sbjct: 49 LTTFTVLADMVQNV 62
>3gi1_A LBP, laminin-binding protein of group A streptococci;
zinc-binding receptor, metal-binding, helical backbone,
alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB:
3hjt_A
Length = 286
Score = 25.3 bits (56), Expect = 4.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 MTTNSPLADFVKYV 14
+T+ P+ K V
Sbjct: 16 VTSFYPMYAMTKEV 29
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal
binding protein; 2.60A {Streptococcus suis}
Length = 282
Score = 25.0 bits (55), Expect = 4.9
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 1 MTTNSPLADFVKYV 14
T S L D V +
Sbjct: 10 AVTTSFLNDMVYQL 23
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein,
metal binding protein; 2.40A {Streptococcus pneumoniae}
Length = 284
Score = 25.0 bits (55), Expect = 4.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 MTTNSPLADFVKYV 14
+T+ P+ VK V
Sbjct: 14 VTSFYPIYAMVKEV 27
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein,
metal binding, cell membrane, copper transport, iron;
1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A
3ztt_A
Length = 294
Score = 24.9 bits (55), Expect = 5.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 MTTNSPLADFVKYV 14
+ TNS +AD K +
Sbjct: 21 VATNSIIADMTKAI 34
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 24.8 bits (54), Expect = 5.7
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 33 PKGHINPNIQKSNSKVVNVINIEDIAD 59
PK + +N+ DI +
Sbjct: 126 PKLRGIAGGMHAGLPKYVNVNLTDIEN 152
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding
protein, ABC trans binding protein; 1.80A {Treponema
pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Length = 313
Score = 24.6 bits (54), Expect = 6.7
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 MTTNSPLADFVKYV 14
+TT +AD VK +
Sbjct: 42 VTTIGMIADAVKNI 55
>2z4u_A Ribosome-inactivating protein PD-L4; crystallization, X-RAY,
hydrolase; 1.10A {Phytolacca dioica} PDB: 2qes_A 2qet_A*
2z53_A 3h5k_A* 3le7_A* 1gik_A* 1j1q_A* 1j1r_A* 1j1s_A*
2q8w_A* 1apa_A 1qci_A* 1paf_A 1pag_A* 1qcg_A 1d6a_A*
1qcj_A*
Length = 261
Score = 24.7 bits (53), Expect = 6.8
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 21 GGISYGVYKVISPKGHINPNIQKSNSKVVNVINIEDIADTLAL 63
G IS ++ + ++ ++ V+ +++I + L
Sbjct: 208 GKISLAIHNAKNGALTSPLELKNADDTKWIVLRVDEIKPDMGL 250
>3px8_X Preproricin; toxin, protein-ligand complex, hydrolase, ribosome
inactivating protein, N-glycosidase, pterin,
hydrolase-INHI complex; HET: JP2; 1.29A {Ricinus
communis} PDB: 3px9_X* 1br5_A* 1apg_A* 1fmp_A* 1il3_A*
1il4_A* 1il5_A* 1il9_A* 2aai_A* 3rti_A* 3rtj_A* 1ift_A
1ifs_A 1ifu_A* 2pjo_A 1rtc_A 1br6_A* 2pjn_A 2p8n_A
2r2x_A ...
Length = 258
Score = 24.7 bits (53), Expect = 7.0
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 21 GGISYGVYKVISPKGHINPNI--QKSNSKVVNVINIEDIADTLAL 63
G +S + + S +G I Q+ N +V ++ + +AL
Sbjct: 209 GRLSTAIQE--SNQGAFASPIQLQRRNGSKFSVYDVSILIPIIAL 251
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Bacillus subtilis}
Length = 312
Score = 24.7 bits (54), Expect = 7.2
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 1 MTTNSPLADFVKYV 14
+TT P+ +F K +
Sbjct: 25 VTTFYPMYEFTKQI 38
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase;
lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A*
2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A*
3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Length = 171
Score = 24.1 bits (53), Expect = 8.6
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 34 KGHINPNIQKSNSKVVNVINIEDIADTL 61
H + ++++S+ + + IE I L
Sbjct: 6 HHHHHGSMEQSHQNLQSQFFIEHILQIL 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,495,964
Number of extensions: 73890
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 25
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)