RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4887
         (100 letters)



>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 28.7 bits (64), Expect = 0.094
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 52 INIEDIADTLALCRCWRSKTFPKCDGSHAQH 82
          + I DIA  LA    W  +T      + AQH
Sbjct: 24 VEIADIAHGLARVARWNGQTRGDHAFTVAQH 54


>d3c8ga1 a.285.1.1 (A:1-168) Putative transcriptional regulator
          YggD {Shigella flexneri [TaxId: 623]}
          Length = 168

 Score = 24.4 bits (53), Expect = 2.6
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 1  MTTNSPLADFVKYVPYALVLGGISYGVYKVIS 32
          +  + PL D    +     LG +   +Y  I+
Sbjct: 58 LAQSGPLDDIDVALRLIYALGKMDKWLYADIT 89


>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
          {Treponema pallidum [TaxId: 160]}
          Length = 277

 Score = 23.4 bits (49), Expect = 7.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 1  MTTNSPLADFVKYV 14
          +TT   +AD VK +
Sbjct: 6  VTTIGMIADAVKNI 19


>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
           gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 159

 Score = 22.9 bits (48), Expect = 9.5
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 34  KGHINPNIQKSNSKVVNVINIEDIADTLAL 63
           K H  P I   +   + ++  + I   L L
Sbjct: 126 KIHRLPVIDPESGNTLYILTHKRILKFLKL 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,539
Number of extensions: 14349
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)