BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4888
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 126 FNPNIQKSNSKVVNVINIEDIADT-LALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
N IQK N KVVN INIED++ T A CRCWRSKTFP CDGSH +HN+ TGDN
Sbjct: 19 INLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDN 72
>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
Length = 81
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 68
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 16 INLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
Length = 84
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 11 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 66
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 14 INLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
Length = 80
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 69
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 17 INLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 75
>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
Length = 76
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 65
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIIS 239
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 72
>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel [2fe-
2s] Cluster Coordination
Length = 79
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 13 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 68
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 16 INLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
Length = 76
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+A CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 65
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIIS 239
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 72
>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
Length = 76
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ + ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 10 KAMINLHIQKDNPKIVHAFDGEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 65
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIIS 239
+N H+ K + + F V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 13 INLHIQKDNPKIVHAFDGEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 72
>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
Length = 77
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLAL-CRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D A+ CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 66
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 180 VNKHLYKSEDVVTNRFTVFP-SDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238
+N H+ K + + F + D V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
Query: 239 S 239
Sbjct: 73 K 73
>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
Length = 76
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 65
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIIS 239
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+GP II
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 72
>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
Length = 79
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
+ N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+ +HN+ TGDN
Sbjct: 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDN 69
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%)
Query: 180 VNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238
+N H+ K + + F + V CRCW SKKFP CDGA HNE DN+GP II
Sbjct: 17 INLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPLII 75
>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
Length = 83
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 126 FNPNIQKSNSKVVNVINIEDIADTLA-LCRCWRSKTFPKCDGSHAQHNQCTGDN 178
NP I+K+ KVV+ + + +++ + CRCWRS TFP CDGSH +HN+ GDN
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDN 74
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 166 GSHAQHNQ------CTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLV-LCRCWESKKFPLC 218
GSH + Q G +N + K+ED V + V + CRCW S FPLC
Sbjct: 1 GSHMRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLC 60
Query: 219 DGAHRAHNERNKDNIGPAII 238
DG+H HN+ N DN+GP ++
Sbjct: 61 DGSHVKHNKANGDNVGPLLL 80
>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
Length = 83
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 126 FNPNIQKSNSKVVNVINIEDIADTLA-LCRCWRSKTFPKCDGSHAQHNQCTGDN 178
NP I+K+ KVV+ + + +++ + CRCWRS TFP CDGS +HN+ GDN
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDN 74
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 166 GSHAQHNQ------CTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLV-LCRCWESKKFPLC 218
GSH + Q G +N + K+ED V + V + CRCW S FPLC
Sbjct: 1 GSHMRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLC 60
Query: 219 DGAHRAHNERNKDNIGPAII 238
DG+ HN+ N DN+GP ++
Sbjct: 61 DGSCVKHNKANGDNVGPLLL 80
>pdb|3TBN|A Chain A, Crystal Structure Of A Miner2 Homolog: A Type 6 Cdgsh
Iron-Sulfur Protein
Length = 87
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 149 TLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLVLCR 208
T C C RSK P CDGSH + TG V Y + T F C
Sbjct: 29 TYHWCACGRSKAQPFCDGSH----KGTGLAPV---AYTPDKAGTAYF-----------CG 70
Query: 209 CWESKKFPLCDGAHR 223
C SK PLCDG H+
Sbjct: 71 CKASKAPPLCDGTHK 85
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 115 TLALCRCWRMYFNPNIQKSN--SKVVNVINIEDIADTLALCRCWRSKTFPKCDGSH 168
T C C R P S+ + + V D A T C C SK P CDG+H
Sbjct: 29 TYHWCACGRSKAQPFCDGSHKGTGLAPVAYTPDKAGTAYFCGCKASKAPPLCDGTH 84
>pdb|3TBO|A Chain A, Crystal Structure Of A Type 3 Cdgsh Iron-Sulfur Protein
Length = 60
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 152 LCRCWRSKTFPKCDGSHAQ 170
LCRC S + P CDG+HA+
Sbjct: 24 LCRCGHSGSKPHCDGTHAK 42
>pdb|3TBM|A Chain A, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein.
pdb|3TBM|B Chain B, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein
Length = 69
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 206 LCRCWESKKFPLCDGAHR 223
LCRC S P CDG+H+
Sbjct: 43 LCRCGHSLNKPFCDGSHK 60
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 152 LCRCWRSKTFPKCDGSHAQ 170
LCRC S P CDGSH +
Sbjct: 43 LCRCGHSLNKPFCDGSHKR 61
>pdb|3C5P|A Chain A, Crystal Structure Of Bas0735, A Protein Of Unknown
Function From Bacillus Anthracis Str. Sterne
pdb|3C5P|B Chain B, Crystal Structure Of Bas0735, A Protein Of Unknown
Function From Bacillus Anthracis Str. Sterne
pdb|3C5P|C Chain C, Crystal Structure Of Bas0735, A Protein Of Unknown
Function From Bacillus Anthracis Str. Sterne
pdb|3C5P|D Chain D, Crystal Structure Of Bas0735, A Protein Of Unknown
Function From Bacillus Anthracis Str. Sterne
pdb|3C5P|E Chain E, Crystal Structure Of Bas0735, A Protein Of Unknown
Function From Bacillus Anthracis Str. Sterne
pdb|3C5P|F Chain F, Crystal Structure Of Bas0735, A Protein Of Unknown
Function From Bacillus Anthracis Str. Sterne
Length = 197
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 54 RKKVDAKSLADFVKYVPYALVLGGISYGVYKVISPKGHINPNIQKSNSK 102
R +V+ + + DF K ++ GI+ KVISP G +N K++++
Sbjct: 51 RSRVEQEVVVDFYKQEVFSYANTGIT--TEKVISPDGSVNKRTGKASTE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,506,046
Number of Sequences: 62578
Number of extensions: 349274
Number of successful extensions: 857
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 50
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)