Query psy4888
Match_columns 273
No_of_seqs 230 out of 816
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:21:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tbn_A Putative uncharacterize 99.9 2.9E-28 9.8E-33 191.4 7.0 78 126-225 10-87 (87)
2 4ezf_A Mitoneet, CDGSH iron-su 99.9 8.4E-26 2.9E-30 173.6 4.4 66 123-188 10-76 (77)
3 3fnv_A CDGSH iron sulfur domai 99.9 6.4E-26 2.2E-30 176.4 3.4 66 123-188 16-82 (83)
4 3s2r_A AT5G51720/MIO24_14; red 99.9 2.8E-24 9.4E-29 167.0 2.5 64 123-186 18-82 (83)
5 3ew0_A Mitoneet, CDGSH iron su 99.9 2E-22 6.7E-27 156.3 3.6 66 123-188 14-79 (80)
6 4ezf_A Mitoneet, CDGSH iron-su 99.7 9.5E-18 3.3E-22 129.0 1.8 66 177-242 10-76 (77)
7 3fnv_A CDGSH iron sulfur domai 99.7 9.2E-18 3.2E-22 130.6 0.6 76 160-240 4-80 (83)
8 3tbn_A Putative uncharacterize 99.6 3.2E-16 1.1E-20 123.1 6.6 63 171-251 9-71 (87)
9 3ew0_A Mitoneet, CDGSH iron su 99.6 6.4E-17 2.2E-21 125.4 1.9 76 161-242 4-79 (80)
10 3s2r_A AT5G51720/MIO24_14; red 99.6 2.5E-16 8.7E-21 122.4 0.0 62 178-239 19-81 (83)
11 3tbm_A Putative uncharacterize 99.4 3.6E-14 1.2E-18 107.3 2.5 53 176-228 12-65 (69)
12 3tbo_A Zinc finger, CDGSH-type 99.4 1.7E-13 6E-18 101.2 2.5 39 127-170 4-42 (60)
13 3tbo_A Zinc finger, CDGSH-type 99.2 5.3E-12 1.8E-16 93.3 2.0 39 177-228 8-46 (60)
14 3tbm_A Putative uncharacterize 99.1 4.3E-11 1.5E-15 90.4 2.6 44 127-170 9-61 (69)
15 1dxg_A Desulforedoxin; non-hem 48.2 8.1 0.00028 24.9 1.6 22 242-263 2-23 (36)
16 1d0q_A DNA primase; zinc-bindi 39.0 33 0.0011 26.1 4.1 37 202-257 33-69 (103)
17 3o9x_A Uncharacterized HTH-typ 30.3 17 0.00057 27.8 1.1 40 215-256 5-46 (133)
18 2con_A RUH-035 protein, NIN on 28.9 13 0.00045 28.3 0.3 19 238-256 22-40 (79)
19 2j5h_A Teratocarcinoma-derived 25.2 17 0.00057 25.0 0.2 19 202-220 16-41 (41)
20 1wge_A Hypothetical protein 26 20.4 38 0.0013 25.9 1.4 22 137-158 14-38 (83)
No 1
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.95 E-value=2.9e-28 Score=191.41 Aligned_cols=78 Identities=35% Similarity=0.577 Sum_probs=71.2
Q ss_pred ccccccccCceeEEeeecccCCcceEEeecCCCCCCCCCCcccccCccccCCCcccceeeeccceeccceeecCCCCcEE
Q psy4888 126 FNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLV 205 (273)
Q Consensus 126 vnp~I~k~~PkvV~~~diEd~g~~y~~CrCGrSk~~PfCDGSH~~~nk~TgDn~GPLkVKkEE~~V~~~g~v~~~~~~~~ 205 (273)
..|.|+..+|++|++. .|++|+||+||+|+++|||||||. +.++.|++|+.++ +++++
T Consensus 10 ~~~~~~~~~P~~v~le----~g~~~~~C~CG~S~~~PfCDGSH~------~~~f~P~~f~~e~------------~~~~~ 67 (87)
T 3tbn_A 10 TDPVIAQKAPYPVTVE----AGKTYHWCACGRSKAQPFCDGSHK------GTGLAPVAYTPDK------------AGTAY 67 (87)
T ss_dssp TSCCCSCSSCEEEEEC----TTCCEEECSSSCCSSTTBCCSTTT------TTTCCCEEECCSS------------CEEEE
T ss_pred CCcccccCCCEEEEeC----CCCEEEEeeCCCCCCCCCcCCccc------cCCccceEEEECC------------CcEEE
Confidence 5688999999999984 789999999999999999999998 4789999999877 57899
Q ss_pred EEecCCCCCCCcccCCCccC
Q psy4888 206 LCRCWESKKFPLCDGAHRAH 225 (273)
Q Consensus 206 lC~Cg~S~n~PfCDGSH~~~ 225 (273)
||+||+|+|.|||||||+.+
T Consensus 68 lC~CK~T~n~PfCDGsH~~L 87 (87)
T 3tbn_A 68 FCGCKASKAPPLCDGTHKTL 87 (87)
T ss_dssp ECSSSCCSSTTBCCSGGGTC
T ss_pred EecCCCCCCCCccCCcCCcC
Confidence 99999999999999999863
No 2
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.91 E-value=8.4e-26 Score=173.64 Aligned_cols=66 Identities=47% Similarity=0.862 Sum_probs=63.9
Q ss_pred cccccccccccCceeEEeeecccCCc-ceEEeecCCCCCCCCCCcccccCccccCCCcccceeeecc
Q psy4888 123 RMYFNPNIQKSNSKVVNVINIEDIAD-TLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSE 188 (273)
Q Consensus 123 ~~~vnp~I~k~~PkvV~~~diEd~g~-~y~~CrCGrSk~~PfCDGSH~~~nk~TgDn~GPLkVKkEE 188 (273)
++++|+.|++++|++|+.+||||.|+ +++|||||+|++||||||||.+||+++|+|++||+|+.++
T Consensus 10 ~~~vN~~i~kd~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~ 76 (77)
T 4ezf_A 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 76 (77)
T ss_dssp TTCSCSSSCTTSSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBC
T ss_pred ccccccceecCCCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEecc
Confidence 88999999999999999999999998 9999999999999999999999999999999999999765
No 3
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.4e-26 Score=176.38 Aligned_cols=66 Identities=59% Similarity=0.908 Sum_probs=63.4
Q ss_pred cccccccccccCceeEEeeecccCC-cceEEeecCCCCCCCCCCcccccCccccCCCcccceeeecc
Q psy4888 123 RMYFNPNIQKSNSKVVNVINIEDIA-DTLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSE 188 (273)
Q Consensus 123 ~~~vnp~I~k~~PkvV~~~diEd~g-~~y~~CrCGrSk~~PfCDGSH~~~nk~TgDn~GPLkVKkEE 188 (273)
++++|+.|++++|++|+.+||||.+ ++++|||||+|+++|||||||.+||+++|+|++||+++.++
T Consensus 16 ~~~vN~~I~k~~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k~ 82 (83)
T 3fnv_A 16 DSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKKE 82 (83)
T ss_dssp CCCSCSSSCTTSSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECCC
T ss_pred ccccCcceecCCCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEecc
Confidence 5899999999999999999999999 89999999999999999999999999999999999998764
No 4
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.88 E-value=2.8e-24 Score=167.03 Aligned_cols=64 Identities=42% Similarity=0.773 Sum_probs=60.1
Q ss_pred cccccccccccCceeEEeeecccCC-cceEEeecCCCCCCCCCCcccccCccccCCCcccceeee
Q psy4888 123 RMYFNPNIQKSNSKVVNVINIEDIA-DTLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYK 186 (273)
Q Consensus 123 ~~~vnp~I~k~~PkvV~~~diEd~g-~~y~~CrCGrSk~~PfCDGSH~~~nk~TgDn~GPLkVKk 186 (273)
.+++|+.|+++.|++||.+||||.+ ++++|||||+|++||||||||.+||+++|+|++|+++++
T Consensus 18 g~~vN~~I~K~~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk 82 (83)
T 3s2r_A 18 GGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKK 82 (83)
T ss_dssp --CCCSSTTTTSSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEEC
T ss_pred cCccCchhhcCCCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEec
Confidence 3689999999999999999999999 699999999999999999999999999999999999975
No 5
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.85 E-value=2e-22 Score=156.25 Aligned_cols=66 Identities=47% Similarity=0.862 Sum_probs=62.9
Q ss_pred cccccccccccCceeEEeeecccCCcceEEeecCCCCCCCCCCcccccCccccCCCcccceeeecc
Q psy4888 123 RMYFNPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSE 188 (273)
Q Consensus 123 ~~~vnp~I~k~~PkvV~~~diEd~g~~y~~CrCGrSk~~PfCDGSH~~~nk~TgDn~GPLkVKkEE 188 (273)
++++|..|++++|++|+.+++||.+++|+|||||+|+++|||||||.++++++|+|++||+|+.++
T Consensus 14 ~~~vni~I~k~gP~~V~~~~led~~~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~~ 79 (80)
T 3ew0_A 14 KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 79 (80)
T ss_dssp CCCSCSSSCTTSSSEEEEECGGGCCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECCC
T ss_pred CCccCeEEeCCCCEEEEeeccccCCCeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEecc
Confidence 778999999999999999999999999999999999999999999999999999999999998753
No 6
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.67 E-value=9.5e-18 Score=129.02 Aligned_cols=66 Identities=42% Similarity=0.827 Sum_probs=61.1
Q ss_pred CCcccceeeeccceeccceeecCCCC-cEEEEecCCCCCCCcccCCCccCccCCCCCccceeEEEec
Q psy4888 177 DNRVNKHLYKSEDVVTNRFTVFPSDP-PLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIISASN 242 (273)
Q Consensus 177 Dn~GPLkVKkEE~~V~~~g~v~~~~~-~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~~~ek 242 (273)
....++.|+++.++|.+.+++++.++ .++||+||+|+++|||||||.+++++++++++|++|+..+
T Consensus 10 ~~~vN~~i~kd~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~ 76 (77)
T 4ezf_A 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 76 (77)
T ss_dssp TTCSCSSSCTTSSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBC
T ss_pred ccccccceecCCCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEecc
Confidence 55788899999999999999999887 9999999999999999999999999999999999997654
No 7
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.66 E-value=9.2e-18 Score=130.64 Aligned_cols=76 Identities=36% Similarity=0.650 Sum_probs=60.1
Q ss_pred CCCCCCcccccCccccCCCcccceeeeccceeccceeecCCC-CcEEEEecCCCCCCCcccCCCccCccCCCCCccceeE
Q psy4888 160 TFPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTVFPSD-PPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAII 238 (273)
Q Consensus 160 ~~PfCDGSH~~~nk~TgDn~GPLkVKkEE~~V~~~g~v~~~~-~~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~ 238 (273)
-++||...|.. .+...++.|+++.++|.+++++++.+ +.++||+||+|+++|||||||+++++++++|++|++|
T Consensus 4 y~~~~~~~~~~-----k~~~vN~~I~k~~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~ 78 (83)
T 3fnv_A 4 MRPFLPKKKQQ-----KDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLIL 78 (83)
T ss_dssp -----------------CCCSCSSSCTTSSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEE
T ss_pred chhhccccccC-----cccccCcceecCCCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEE
Confidence 35777766542 35678999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EE
Q psy4888 239 SA 240 (273)
Q Consensus 239 ~~ 240 (273)
+.
T Consensus 79 ~~ 80 (83)
T 3fnv_A 79 KK 80 (83)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 8
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.63 E-value=3.2e-16 Score=123.13 Aligned_cols=63 Identities=19% Similarity=0.401 Sum_probs=54.0
Q ss_pred CccccCCCcccceeeeccceeccceeecCCCCcEEEEecCCCCCCCcccCCCccCccCCCCCccceeEEEeccceEEecC
Q psy4888 171 HNQCTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIISASNKHNLYMND 250 (273)
Q Consensus 171 ~nk~TgDn~GPLkVKkEE~~V~~~g~v~~~~~~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~~~ek~~~v~lC~ 250 (273)
|........+|+.|+.++ +.+|+||+||+|+|+|||||||+.. +..|+.|+++++++||||.
T Consensus 9 ~~~~~~~~~~P~~v~le~------------g~~~~~C~CG~S~~~PfCDGSH~~~------~f~P~~f~~e~~~~~~lC~ 70 (87)
T 3tbn_A 9 HTDPVIAQKAPYPVTVEA------------GKTYHWCACGRSKAQPFCDGSHKGT------GLAPVAYTPDKAGTAYFCG 70 (87)
T ss_dssp TTSCCCSCSSCEEEEECT------------TCCEEECSSSCCSSTTBCCSTTTTT------TCCCEEECCSSCEEEEECS
T ss_pred cCCcccccCCCEEEEeCC------------CCEEEEeeCCCCCCCCCcCCccccC------CccceEEEECCCcEEEEec
Confidence 334445667898888765 6789999999999999999999984 6789999999999999999
Q ss_pred C
Q psy4888 251 T 251 (273)
Q Consensus 251 ~ 251 (273)
|
T Consensus 71 C 71 (87)
T 3tbn_A 71 C 71 (87)
T ss_dssp S
T ss_pred C
Confidence 6
No 9
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.62 E-value=6.4e-17 Score=125.41 Aligned_cols=76 Identities=38% Similarity=0.716 Sum_probs=58.6
Q ss_pred CCCCCcccccCccccCCCcccceeeeccceeccceeecCCCCcEEEEecCCCCCCCcccCCCccCccCCCCCccceeEEE
Q psy4888 161 FPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIISA 240 (273)
Q Consensus 161 ~PfCDGSH~~~nk~TgDn~GPLkVKkEE~~V~~~g~v~~~~~~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~~~ 240 (273)
.+||...+.. ....++.|..+.+++...+++++.++.++||+||+|+++|||||||+..+.+++++++|++|+.
T Consensus 4 ~~~~~~~~~~------~~~vni~I~k~gP~~V~~~~led~~~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~ 77 (80)
T 3ew0_A 4 MRFYVKDHRN------KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKK 77 (80)
T ss_dssp CCCCCCCCCC------CCCSCSSSCTTSSSEEEEECGGGCCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEEC
T ss_pred ccccccccCC------CCccCeEEeCCCCEEEEeeccccCCCeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEe
Confidence 5677665442 2234555555555555556666667899999999999999999999999999999999999987
Q ss_pred ec
Q psy4888 241 SN 242 (273)
Q Consensus 241 ek 242 (273)
.+
T Consensus 78 ~~ 79 (80)
T 3ew0_A 78 KE 79 (80)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 10
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.56 E-value=2.5e-16 Score=122.45 Aligned_cols=62 Identities=39% Similarity=0.761 Sum_probs=57.1
Q ss_pred CcccceeeeccceeccceeecCCC-CcEEEEecCCCCCCCcccCCCccCccCCCCCccceeEE
Q psy4888 178 NRVNKHLYKSEDVVTNRFTVFPSD-PPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIIS 239 (273)
Q Consensus 178 n~GPLkVKkEE~~V~~~g~v~~~~-~~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~~ 239 (273)
...++.|++++++|.+++++++.+ +.++||+||+|+++|||||||.++++++++|++|++++
T Consensus 19 ~~vN~~I~K~~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivk 81 (83)
T 3s2r_A 19 GGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLK 81 (83)
T ss_dssp -CCCSSTTTTSSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEE
T ss_pred CccCchhhcCCCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEe
Confidence 467788899999999999999977 79999999999999999999999999999999999986
No 11
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.42 E-value=3.6e-14 Score=107.27 Aligned_cols=53 Identities=30% Similarity=0.442 Sum_probs=47.0
Q ss_pred CCCcccceeeeccceeccceeecC-CCCcEEEEecCCCCCCCcccCCCccCccC
Q psy4888 176 GDNRVNKHLYKSEDVVTNRFTVFP-SDPPLVLCRCWESKKFPLCDGAHRAHNER 228 (273)
Q Consensus 176 gDn~GPLkVKkEE~~V~~~g~v~~-~~~~~~lC~Cg~S~n~PfCDGSH~~~~~~ 228 (273)
....||+.|+++.++++.+|..+. ++..++||+||+|+|+|||||||+....+
T Consensus 12 v~~nGPl~V~G~v~i~~~dG~~~~~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~ 65 (69)
T 3tbm_A 12 ARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHKRVEFD 65 (69)
T ss_dssp ECTTSCEEEESSCEEEESSCCEECCBTTEEEECCSSCCSSTTBCCSHHHHTTCC
T ss_pred EeCCCCEEEECCCeEECCCCCEEeeCCCEEEEeeCCCCCCCCccCCCcCCCCcc
Confidence 455699999999999999999877 67899999999999999999999876543
No 12
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.36 E-value=1.7e-13 Score=101.22 Aligned_cols=39 Identities=31% Similarity=0.590 Sum_probs=32.1
Q ss_pred cccccccCceeEEeeecccCCcceEEeecCCCCCCCCCCccccc
Q psy4888 127 NPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQ 170 (273)
Q Consensus 127 np~I~k~~PkvV~~~diEd~g~~y~~CrCGrSk~~PfCDGSH~~ 170 (273)
...+.+++|+.|++ .+++|+||+||+|+++|||||||..
T Consensus 4 ~I~v~~ngP~~v~~-----e~~~~~lC~CG~S~n~PFCDGSHk~ 42 (60)
T 3tbo_A 4 EIRAIENGPYEVKI-----GGRAIYLCRCGHSGSKPHCDGTHAK 42 (60)
T ss_dssp EEEECTTSCEEEEC--------CEEECCSSCCTTTTBCCSHHHH
T ss_pred EEEEeCCCCEEEEE-----CCcEEEEEECCCCCCCCccCCcCCC
Confidence 34678999999985 3578899999999999999999985
No 13
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.18 E-value=5.3e-12 Score=93.33 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=29.8
Q ss_pred CCcccceeeeccceeccceeecCCCCcEEEEecCCCCCCCcccCCCccCccC
Q psy4888 177 DNRVNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNER 228 (273)
Q Consensus 177 Dn~GPLkVKkEE~~V~~~g~v~~~~~~~~lC~Cg~S~n~PfCDGSH~~~~~~ 228 (273)
...+|+.|+.+ ++.++||+||+|+|+|||||||+....+
T Consensus 8 ~~ngP~~v~~e-------------~~~~~lC~CG~S~n~PFCDGSHk~~~f~ 46 (60)
T 3tbo_A 8 IENGPYEVKIG-------------GRAIYLCRCGHSGSKPHCDGTHAKVGFK 46 (60)
T ss_dssp CTTSCEEEEC----------------CEEECCSSCCTTTTBCCSHHHHHTCC
T ss_pred eCCCCEEEEEC-------------CcEEEEEECCCCCCCCccCCcCCCCccc
Confidence 34578888632 3567999999999999999999876543
No 14
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.06 E-value=4.3e-11 Score=90.44 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=33.3
Q ss_pred cccccccCceeEEe-eecc--------cCCcceEEeecCCCCCCCCCCccccc
Q psy4888 127 NPNIQKSNSKVVNV-INIE--------DIADTLALCRCWRSKTFPKCDGSHAQ 170 (273)
Q Consensus 127 np~I~k~~PkvV~~-~diE--------d~g~~y~~CrCGrSk~~PfCDGSH~~ 170 (273)
...+..++|+.|.. +.|+ ..+.+|+|||||+|+++|||||||..
T Consensus 9 ~I~v~~nGPl~V~G~v~i~~~dG~~~~~~~~~~~lC~Cg~S~n~PfCDGsH~~ 61 (69)
T 3tbm_A 9 VITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHKR 61 (69)
T ss_dssp EEEECTTSCEEEESSCEEEESSCCEECCBTTEEEECCSSCCSSTTBCCSHHHH
T ss_pred EEEEeCCCCEEEECCCeEECCCCCEEeeCCCEEEEeeCCCCCCCCccCCCcCC
Confidence 45667788888874 1121 13467999999999999999999986
No 15
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=48.24 E-value=8.1 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.3
Q ss_pred ccceEEecCCCCCcccccccCC
Q psy4888 242 NKHNLYMNDTSGNETNVAHANE 263 (273)
Q Consensus 242 k~~~v~lC~~~gn~~~~~~~~~ 263 (273)
+..+.|.|..|||..-+++..+
T Consensus 2 k~~~fY~C~~CGnivev~~~g~ 23 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVKVLEEGG 23 (36)
T ss_dssp CTTCEEECTTTCCEEEEEECCS
T ss_pred CcccEEEcCCCCcEEEEEeCCC
Confidence 4578899999999999887654
No 16
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=39.02 E-value=33 Score=26.13 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=26.2
Q ss_pred CcEEEEecCCCCCCCcccCCCccCccCCCCCccceeEEEeccceEEecCCCCCccc
Q psy4888 202 PPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIISASNKHNLYMNDTSGNETN 257 (273)
Q Consensus 202 ~~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~~~ek~~~v~lC~~~gn~~~ 257 (273)
+..+++.| |||+..| | +|.+..+++.|.|-.||..-+
T Consensus 33 G~~~~~~C------Pfh~e~~------------p-Sf~V~~~k~~~~Cf~cg~gGd 69 (103)
T 1d0q_A 33 GRNYFGLC------PFHGEKT------------P-SFSVSPEKQIFHCFGCGAGGN 69 (103)
T ss_dssp TTEEEECC------SSSCCSS------------C-CEEEETTTTEEEETTTCCEEC
T ss_pred CCeEEEEC------CCCCCCC------------C-cEEEEcCCCEEEECCCCCCCC
Confidence 44567776 7887543 3 566777789999999985444
No 17
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=30.25 E-value=17 Score=27.84 Aligned_cols=40 Identities=5% Similarity=0.013 Sum_probs=23.3
Q ss_pred CCcccCCCccCccCC-CCCccceeEEEeccc-eEEecCCCCCcc
Q psy4888 215 FPLCDGAHRAHNERN-KDNIGPAIISASNKH-NLYMNDTSGNET 256 (273)
Q Consensus 215 ~PfCDGSH~~~~~~~-~d~~~P~~~~~ek~~-~v~lC~~~gn~~ 256 (273)
=|+|.+.+......+ .-..+-..++++ . ..+.|+.||.+.
T Consensus 5 Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~--~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 5 CPVCHQGEMVSGIKDIPYTFRGRKTVLK--GIHGLYCVHCEESI 46 (133)
T ss_dssp CTTTSSSBEEEEEEEEEEEETTEEEEEE--EEEEEEESSSSCEE
T ss_pred CCcCCCCceeeceEEEEEEECCEEEEEC--CCceeECCCCCCEe
Confidence 489988764221110 012333445555 5 799999999764
No 18
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=28.88 E-value=13 Score=28.33 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.1
Q ss_pred EEEeccceEEecCCCCCcc
Q psy4888 238 ISASNKHNLYMNDTSGNET 256 (273)
Q Consensus 238 ~~~ek~~~v~lC~~~gn~~ 256 (273)
|++..+....+|..|||.|
T Consensus 22 f~~t~~~~k~FCp~CGn~T 40 (79)
T 2con_A 22 FKTTSDMNRVFCGHCGNKT 40 (79)
T ss_dssp CCEESCSSCCSCSSSCCSC
T ss_pred ceECCCcccccccccCccc
Confidence 3455678889999999986
No 19
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=25.16 E-value=17 Score=24.96 Aligned_cols=19 Identities=42% Similarity=1.058 Sum_probs=14.0
Q ss_pred CcEEEEecCCC-------CCCCcccC
Q psy4888 202 PPLVLCRCWES-------KKFPLCDG 220 (273)
Q Consensus 202 ~~~~lC~Cg~S-------~n~PfCDG 220 (273)
..-+||+|+.. ...|-|||
T Consensus 16 k~C~LCRC~~G~LhCfp~~~~~~CD~ 41 (41)
T 2j5h_A 16 KKCSLCRCWHGQLHCLPQTFLPGCDX 41 (41)
T ss_dssp CCCCCCCCCSSSCCSCCSSSSTTCC-
T ss_pred cCceEEEeecCceEEcccccCCCCCC
Confidence 56789999976 36788887
No 20
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.45 E-value=38 Score=25.92 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=11.6
Q ss_pred eEEeeecc--cCCcceEE-eecCCC
Q psy4888 137 VVNVINIE--DIADTLAL-CRCWRS 158 (273)
Q Consensus 137 vV~~~diE--d~g~~y~~-CrCGrS 158 (273)
.|++.|++ +....|++ ||||-.
T Consensus 14 ev~LeDm~~de~~~~y~y~CrCGd~ 38 (83)
T 1wge_A 14 EVEIEDFQYDEDSETYFYPCPCGDN 38 (83)
T ss_dssp EEEGGGSCCBTTTTEEEECCSSSSC
T ss_pred EEEHHHceEccCCCEEEEeCCCCCE
Confidence 44454554 22345544 999743
Done!