Query psy4888
Match_columns 273
No_of_seqs 230 out of 816
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 20:21:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dxga_ g.41.5.2 (A:) Desulfor 55.3 2.3 0.00017 26.9 1.4 22 242-263 2-23 (36)
2 d1d0qa_ g.41.3.2 (A:) Zinc-bin 53.2 6.8 0.00049 28.3 4.1 38 201-257 31-68 (102)
3 d1dfxa2 g.41.5.2 (A:1-36) Desu 48.0 3.9 0.00028 25.8 1.6 21 243-263 3-23 (36)
4 d1vzia2 g.41.5.2 (A:1-37) Desu 47.8 3.5 0.00026 26.2 1.4 22 242-263 2-23 (37)
5 d2cona1 g.41.15.1 (A:8-73) RNA 32.7 4.9 0.00035 28.0 0.3 19 238-256 15-33 (66)
6 d1nnqa2 g.41.5.1 (A:135-171) R 13.2 40 0.0029 20.7 1.5 15 243-257 2-16 (37)
7 d1x62a2 g.39.1.3 (A:8-42) PDZ 12.9 25 0.0018 21.7 0.5 14 243-256 5-18 (35)
8 d1yuza2 g.41.5.1 (A:167-202) N 11.6 48 0.0035 20.2 1.5 15 243-257 2-16 (36)
9 d1x64a1 g.39.1.3 (A:8-52) PDZ 11.0 36 0.0026 22.1 0.8 16 241-256 13-28 (45)
10 d1iuja_ d.58.4.5 (A:) Hypothet 8.8 1.3E+02 0.0097 20.2 3.4 36 38-84 7-42 (102)
No 1
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=55.33 E-value=2.3 Score=26.95 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.6
Q ss_pred ccceEEecCCCCCcccccccCC
Q psy4888 242 NKHNLYMNDTSGNETNVAHANE 263 (273)
Q Consensus 242 k~~~v~lC~~~gn~~~~~~~~~ 263 (273)
+..++|-|..|||..-++|+-.
T Consensus 2 ~~~evYkC~~CGNiVeV~~~g~ 23 (36)
T d1dxga_ 2 NEGDVYKCELCGQVVKVLEEGG 23 (36)
T ss_dssp CTTCEEECTTTCCEEEEEECCS
T ss_pred CcccEEEeccCCcEEEEEECCC
Confidence 4578999999999999998743
No 2
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=53.19 E-value=6.8 Score=28.30 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCCCCcccCCCccCccCCCCCccceeEEEeccceEEecCCCCCccc
Q psy4888 201 DPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIISASNKHNLYMNDTSGNETN 257 (273)
Q Consensus 201 ~~~~~lC~Cg~S~n~PfCDGSH~~~~~~~~d~~~P~~~~~ek~~~v~lC~~~gn~~~ 257 (273)
.+..++|.| |||+..| | .+.+..+++.|.|-.||-.-|
T Consensus 31 ~G~~~~~~C------Pfh~d~~------------~-S~~v~~~~~~~~Cf~Cg~~Gd 68 (102)
T d1d0qa_ 31 QGRNYFGLC------PFHGEKT------------P-SFSVSPEKQIFHCFGCGAGGN 68 (102)
T ss_dssp ETTEEEECC------SSSCCSS------------C-CEEEETTTTEEEETTTCCEEC
T ss_pred CCCceEEec------cccCCCC------------c-ceeEcCCchheeeehhccccc
Confidence 356788888 9987654 2 466777889999999985444
No 3
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=48.03 E-value=3.9 Score=25.81 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.9
Q ss_pred cceEEecCCCCCcccccccCC
Q psy4888 243 KHNLYMNDTSGNETNVAHANE 263 (273)
Q Consensus 243 ~~~v~lC~~~gn~~~~~~~~~ 263 (273)
.-++|-|+.|||..-++|+-.
T Consensus 3 ~~evYkC~~CGNiVeV~~~g~ 23 (36)
T d1dfxa2 3 HLEVYKCTHCGNIVEVLHGGG 23 (36)
T ss_dssp TTCEEECTTTCCEEECSSCCS
T ss_pred cccEEEecccCcEEEEEECCC
Confidence 457899999999999999753
No 4
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}
Probab=47.75 E-value=3.5 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.3
Q ss_pred ccceEEecCCCCCcccccccCC
Q psy4888 242 NKHNLYMNDTSGNETNVAHANE 263 (273)
Q Consensus 242 k~~~v~lC~~~gn~~~~~~~~~ 263 (273)
+.-++|-|+-|||..-++|+-.
T Consensus 2 ~~~evYkC~~CGNiVeV~~~g~ 23 (37)
T d1vzia2 2 ERLQVYKCEVCGNIVEVLNGGI 23 (37)
T ss_dssp CTTCEEECTTTCCEEEEEECCS
T ss_pred ccccEEEecccCcEEEEEECCC
Confidence 3457899999999999998753
No 5
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.68 E-value=4.9 Score=27.99 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=14.4
Q ss_pred EEEeccceEEecCCCCCcc
Q psy4888 238 ISASNKHNLYMNDTSGNET 256 (273)
Q Consensus 238 ~~~ek~~~v~lC~~~gn~~ 256 (273)
|++..+....+|..|||.|
T Consensus 15 f~~t~~~~k~FCpkCGn~T 33 (66)
T d2cona1 15 FKTTSDMNRVFCGHCGNKT 33 (66)
T ss_dssp CCEESCSSCCSCSSSCCSC
T ss_pred CcCcCCcccccCcccCCCc
Confidence 3345567789999999965
No 6
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=13.21 E-value=40 Score=20.69 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=12.1
Q ss_pred cceEEecCCCCCccc
Q psy4888 243 KHNLYMNDTSGNETN 257 (273)
Q Consensus 243 ~~~v~lC~~~gn~~~ 257 (273)
.+++|+|.-||+..-
T Consensus 2 ~~~~~~C~vCG~i~~ 16 (37)
T d1nnqa2 2 IKKVYICPICGYTAV 16 (37)
T ss_dssp CSCEEECTTTCCEEE
T ss_pred CCcEEECCCCCCEec
Confidence 468999999998743
No 7
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.93 E-value=25 Score=21.73 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=10.2
Q ss_pred cceEEecCCCCCcc
Q psy4888 243 KHNLYMNDTSGNET 256 (273)
Q Consensus 243 ~~~v~lC~~~gn~~ 256 (273)
..+.-+|++|||-.
T Consensus 5 ~qklp~CdkCg~GI 18 (35)
T d1x62a2 5 AQKLPMCDKCGTGI 18 (35)
T ss_dssp CCCCCCCSSSCCCC
T ss_pred cccCccccccCCCc
Confidence 45667899999853
No 8
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.65 E-value=48 Score=20.24 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=12.5
Q ss_pred cceEEecCCCCCccc
Q psy4888 243 KHNLYMNDTSGNETN 257 (273)
Q Consensus 243 ~~~v~lC~~~gn~~~ 257 (273)
+.++|+|.-||....
T Consensus 2 ~~~~~vC~vCGyi~~ 16 (36)
T d1yuza2 2 DDKFHLCPICGYIHK 16 (36)
T ss_dssp SCCEEECSSSCCEEE
T ss_pred CCCEEECCCCCCEee
Confidence 468999999998754
No 9
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.96 E-value=36 Score=22.08 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=11.6
Q ss_pred eccceEEecCCCCCcc
Q psy4888 241 SNKHNLYMNDTSGNET 256 (273)
Q Consensus 241 ek~~~v~lC~~~gn~~ 256 (273)
.+-.+.-+|++|||-.
T Consensus 13 ~~~QkLP~CdkCg~GI 28 (45)
T d1x64a1 13 GSAQRMPLCDKCGSGI 28 (45)
T ss_dssp SCCCSCCBCTTTCCBC
T ss_pred CccccCccccccCCCc
Confidence 3456677899999853
No 10
>d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}
Probab=8.84 E-value=1.3e+02 Score=20.15 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=24.4
Q ss_pred CCcCCcchHHHHHHHHhhhhcccchhhhhhhchhhhhheeeeeeEEE
Q psy4888 38 RFTLPPGLAERFAEGIRKKVDAKSLADFVKYVPYALVLGGISYGVYK 84 (273)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 84 (273)
+|+++||-.+.|.+..+...+ -++-.| |.++|-+++
T Consensus 7 ~~~vkpg~~~~f~~~~~~~~~------~~~~~p-----G~~~~~l~r 42 (102)
T d1iuja_ 7 RIPVRPEYAEQFEEAFRQRAR------LVDRMP-----GFIRNLVLR 42 (102)
T ss_dssp EECBCGGGHHHHHHHHHHHGG------GGTTST-----TEEEEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHHH------HHhcCc-----CceEEEEEc
Confidence 588999999999777764333 223333 567777776
Done!