RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4888
         (273 letters)



>gnl|CDD|197836 smart00704, ZnF_CDGSH, CDGSH-type zinc finger. Function unknown. 
          Length = 38

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 136 KVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHN 172
           K  + + +E      ALCRC RSK FP CDGSH +HN
Sbjct: 1   KRPDEVEVEK-RKKYALCRCGRSKNFPYCDGSHKKHN 36



 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 205 VLCRCWESKKFPLCDGAHRAHNER 228
            LCRC  SK FP CDG+H+ HNE+
Sbjct: 15  ALCRCGRSKNFPYCDGSHKKHNEQ 38


>gnl|CDD|220203 pfam09360, zf-CDGSH, Iron-binding zinc finger CDGSH type.  The
           CDGSH-type zinc finger domain binds iron rather than
           zinc as a redox-active pH-labile 2Fe-2S cluster. The
           conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H
           is a defining feature of this family. The domain is
           oriented towards the cytoplasm and is tethered to the
           mitochondrial membrane by a more N-terminal domain found
           in higher vertebrates, MitoNEET_N, pfam10660. The domain
           forms a uniquely folded homo-dimer and spans the outer
           mitochondrial membrane, orienting the iron-binding
           residues towards the cytoplasm.
          Length = 34

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 141 INIEDIADTLALCRCWRSKTFPKCDGSHA 169
             +E    T ALCRC RSK  P CDGSH 
Sbjct: 6   YKVELEKKTYALCRCGRSKNQPFCDGSHK 34



 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 206 LCRCWESKKFPLCDGAHR 223
           LCRC  SK  P CDG+H+
Sbjct: 17  LCRCGRSKNQPFCDGSHK 34


>gnl|CDD|225904 COG3369, COG3369, Zinc finger domain containing protein
           (CDGSH-type) [Function unknown].
          Length = 78

 Score = 31.7 bits (72), Expect = 0.071
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 205 VLCRCWESKKFPLCDGAH-RAHNERNKDNIGPAIISASNKHNLYMND 250
            LCRC  S+  P CDG H +   +  ++    A       H+ Y N+
Sbjct: 32  ALCRCGHSENKPFCDGTHKKTGFDGEEEAALKAEPKREEFHSFYDNE 78



 Score = 31.3 bits (71), Expect = 0.090
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 145 DIADTLALCRCWRSKTFPKCDGSHA 169
           D  +  ALCRC  S+  P CDG+H 
Sbjct: 26  DGDEQAALCRCGHSENKPFCDGTHK 50


>gnl|CDD|176539 cd08597, PI-PLCc_PRIP_metazoa, Catalytic domain of metazoan
           phospholipase C related, but catalytically inactive
           protein.  This family corresponds to the catalytic
           domain present in metazoan phospholipase C related, but
           catalytically inactive proteins (PRIP), which belong to
           a group of novel Inositol 1,4,5-trisphosphate (InsP3)
           binding protein. PRIP has a primary structure and domain
           architecture, incorporating a pleckstrin homology (PH)
           domain, an array of EF hands, a PLC catalytic core
           domain with highly conserved X- and Y-regions split by a
           linker sequence, and a C-terminal C2 domain, similar to
           phosphoinositide-specific phospholipases C (PI-PLC, EC
           3.1.4.11)-delta isoforms. Due to replacement of critical
           catalytic residues, PRIP do not have PLC enzymatic
           activity. PRIP consists of two subfamilies,
           PRIP-1(previously known as p130 or PLC-1), which is
           predominantly expressed in the brain, and PRIP-2
           (previously known as PLC-2), which exhibits a relatively
           ubiquitous expression. Experiments show both, PRIP-1 and
           PRIP-2, are involved in InsP3-mediated calcium signaling
           pathway and GABA(A)receptor-mediated signaling pathway.
           In addition, PRIP-2 acts as a negative regulator of
           B-cell receptor signaling and immune responses.
          Length = 260

 Score = 32.0 bits (73), Expect = 0.26
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 151 ALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLVLC 207
           AL R  R       DG + +     G    +K  ++S     N +    S+ PL+LC
Sbjct: 38  ALQRGCRCVELDCWDGPNGEPVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILC 94


>gnl|CDD|233650 TIGR01947, rnfG, electron transport complex, RnfABCDGE type, G
          subunit.  The six subunit complex RnfABCDGE in
          Rhodobacter capsulatus encodes an apparent NADH
          oxidoreductase responsible for electron transport to
          nitrogenase, necessary for nitrogen fixation. A closely
          related complex in E. coli, RsxABCDGE (Reducer of
          SoxR), reduces the 2Fe-2S-containing superoxide sensor
          SoxR, active as a transcription factor when oxidized.
          This family of putative NADH oxidoreductase complexes
          exists in many of the same species as the related NQR,
          a Na(+)-translocating NADH-quinone reductase, but is
          distinct. This model describes the A subunit [Energy
          metabolism, Electron transport].
          Length = 186

 Score = 28.1 bits (63), Expect = 4.4
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 38 RFTLPPGL-AERFAEGIRKKVDAKSLADFVKYVPYALVLGG-ISYGVYKVISP 88
          +  LP GL      E    +VD   L        Y    GG +   V +V +P
Sbjct: 39 KQVLPQGLYDNDLLESTVPEVDEDLLGLGTILPVYGAKKGGQVVAYVLEVSAP 91


>gnl|CDD|236381 PRK09108, PRK09108, type III secretion system protein HrcU;
           Validated.
          Length = 353

 Score = 28.1 bits (63), Expect = 4.9
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 12/56 (21%)

Query: 32  PVMTKPRF-TLPPGLAERFAEGIRKKVDAKSLADFVKYVPYALVLGGISYGVYKVI 86
           PVM  P+F  L P      A G++K    +SL + VK +  A+V+  +   ++K I
Sbjct: 115 PVM--PKFDALNP------AAGLKKIFSLRSLIELVKMIVKAVVIAAV---LWKGI 159


>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
           protein.
          Length = 696

 Score = 28.2 bits (63), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 28  EIDPPVMTKPRFTLPPGLAERFAEGIRKKVDAK 60
            + P +MT       P + +R  +G+RKKVDAK
Sbjct: 345 ALKPTLMTAV-----PAILDRVRDGVRKKVDAK 372


>gnl|CDD|240382 PTZ00365, PTZ00365, 60S ribosomal protein L7Ae-like; Provisional.
          Length = 266

 Score = 27.9 bits (62), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 83  YKVISPKGHINPNIQKSNSKVVNVINI--EDIADTLALCRCWRMYFNPNIQ 131
           Y +I  K  +   + +  + VV + N+  ED A+   LC+ +R  FN N +
Sbjct: 178 YCIIKGKSRLGKLVHQKTAAVVAIDNVRKEDQAEFDNLCKNFRAMFNDNSE 228


>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown].
          Length = 644

 Score = 27.9 bits (62), Expect = 6.4
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 122 WRMYFNPNIQKSNSKVVNVINIEDIADTLAL 152
           W  + NP   +    +V ++ I  I    AL
Sbjct: 281 WFKWHNPTASRVTWLIVPLLFILLIIFLTAL 311


>gnl|CDD|185110 PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional.
          Length = 228

 Score = 27.4 bits (60), Expect = 8.3
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 71  YALVLGGISYGVYKVISPKGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRMYFNPNI 130
           +A   GGI+ G  +VI P+G    ++   NS   NV  I+         R       P +
Sbjct: 22  FAAQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPL 81

Query: 131 QKSNSKVVNVINIEDIADTLALCR----CWRSKTFPKCDGSHAQHNQCTGDN 178
                K  N++ I  +  +L   R       SK  P  D      N+ TG++
Sbjct: 82  FVIQPKKENILRIMYVGPSLPTDRESVFYLNSKAIPSVD-----KNKLTGNS 128


>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
           subunit.
          Length = 1044

 Score = 27.6 bits (61), Expect = 9.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 184 LYKSEDVVTNRFTVFPSDPPL------VLCRCWESKKFPLCDGAHRAHNERNK 230
           +Y     V NR  ++  DPP+      + C CW S     C G  R  ++++K
Sbjct: 563 VYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSK 615


>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812).  This
          family consists of several eukaryotic proteins of
          unknown function.
          Length = 536

 Score = 27.4 bits (61), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 27 QEIDPPVMTKPRFTLPPGLAERF 49
          + IDP +      TLPP +A RF
Sbjct: 43 RVIDPDLGKDLPRTLPPSMAARF 65


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,530,468
Number of extensions: 1244759
Number of successful extensions: 1090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 19
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)