RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4888
(273 letters)
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1;
mitochondrial outer membrane, 2Fe-2S proteins, isotopic
LABE highyield expression; 1.40A {Homo sapiens} PDB:
2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Length = 80
Score = 79.4 bits (195), Expect = 2e-19
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 127 NPNIQKSNSKVVNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
N +IQK N K+V+ ++ED+ D CRCWRSK FP CDG+H +HN+ TGDN
Sbjct: 18 NLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDN 69
Score = 67.1 bits (163), Expect = 9e-15
Identities = 28/66 (42%), Positives = 34/66 (51%)
Query: 174 CTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNI 233
+N H+ K + + F + V CRCW SKKFP CDGAH HNE DN+
Sbjct: 11 HRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNV 70
Query: 234 GPAIIS 239
GP II
Sbjct: 71 GPLIIK 76
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein;
1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Length = 83
Score = 74.4 bits (182), Expect = 2e-17
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 127 NPNIQKSNSKVVNVINIEDIADTLA-LCRCWRSKTFPKCDGSHAQHNQCTGDN 178
NP I+K+ KVV+ + + +++ + CRCWRS TFP CDGS +HN+ GDN
Sbjct: 22 NPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDN 74
Score = 65.2 bits (158), Expect = 4e-14
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 173 QCTGDNRVNKHLYKSEDVVTNRFTVFP-SDPPLVLCRCWESKKFPLCDGAHRAHNERNKD 231
+ G +N + K+ED V + V S CRCW S FPLCDG+ HN+ N D
Sbjct: 14 RAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGD 73
Query: 232 NIGPAII 238
N+GP ++
Sbjct: 74 NVGPLLL 80
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 73.6 bits (180), Expect = 3e-17
Identities = 36/53 (67%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 127 NPNIQKSNSKVVNVINIEDIA-DTLALCRCWRSKTFPKCDGSHAQHNQCTGDN 178
N IQK N KVVN INIED++ A CRCWRSKTFP CDGSH +HN+ TGDN
Sbjct: 20 NLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDN 72
Score = 62.8 bits (152), Expect = 4e-13
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 173 QCTGDNRVNKHLYKSEDVVTNRFTVFP-SDPPLVLCRCWESKKFPLCDGAHRAHNERNKD 231
+ D+ +N + K V N + S CRCW SK FP CDG+H HNE D
Sbjct: 12 KQQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGD 71
Query: 232 NIGPAIIS 239
N+GP I+
Sbjct: 72 NVGPLILK 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 1e-08
Identities = 53/324 (16%), Positives = 103/324 (31%), Gaps = 106/324 (32%)
Query: 19 GKLEDY--EFQEI--DPPVMTKPRFTLPPGLAERFAEGIRKKVDAKSL------------ 62
G +DY E +++ V+ AE +E IR +DA+ +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKF---SAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 63 -------ADFVKYVPYALVLGGI----SYGVY-KV--ISPKGHINPNIQKSNSKVVNVIN 108
D++ +P + L G+ Y V K+ +P G + ++ + ++
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLV- 278
Query: 109 IEDIADTLALCRCWRMYFNPNIQKSNSKVVNVINIEDIADTLAL---CRCWRSKTFPKCD 165
A +A W F +++K A T+ RC+ +P
Sbjct: 279 ---TAVAIAETDSWES-FFVSVRK--------------AITVLFFIGVRCYE--AYPNTS 318
Query: 166 GSHA------QHNQ--------CTGDNR---------VNKHLYKSEDV---VTN---RFT 196
+ ++N+ + + N HL + V + N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 197 VFPSDPP--LV-LCRCWESKKFPLCDGAHRA-HNERNKDNIG----PAIISASNK--HNL 246
V S PP L L K P R +ER K P +++ H+
Sbjct: 379 V--SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLP--VAS---PFHSH 430
Query: 247 YMND-TSGNETNVAHANENWDSDD 269
+ + ++ N ++++ D
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKD 454
Score = 34.3 bits (78), Expect = 0.051
Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 86/213 (40%)
Query: 13 YLSLCWGKLEDYE------FQEIDPPVMTKPRFTLPPGL--AERFAEGIRKKVDAKSLAD 64
Y ++ + + D + F+EI+ T F GL A +F +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEH-STSYTFRSEKGLLSATQFTQ------------- 1733
Query: 65 FVKYVPYALVLGGISYGVYKVISPKGHINPNIQKSNSKVV---------------NVINI 109
P AL L + ++ + KG I + +V++I
Sbjct: 1734 -----P-ALTL--MEKAAFEDLKSKGLIPAD------ATFAGHSLGEYAALASLADVMSI 1779
Query: 110 EDIADTLALCR----------------CWRMY-FNPNIQKSNSKVVNVINIEDIADTLAL 152
E + + + R + M NP +V + E + +
Sbjct: 1780 ESLVEVVFY-RGMTMQVAVPRDELGRSNYGMIAINP------GRVAASFSQEALQ---YV 1829
Query: 153 CRCWRSKTFPKCDGSHAQHN----Q--CTGDNR 179
+T +N Q GD R
Sbjct: 1830 VERVGKRTGWLV--EIVNYNVENQQYVAAGDLR 1860
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal
binding protein; 1.15A {Magnetospirillum magneticum}
Length = 87
Score = 43.5 bits (102), Expect = 3e-06
Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 18/77 (23%)
Query: 147 ADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTVFPSDPPLVL 206
T C C RSK P CDGSH + Y + T F
Sbjct: 27 GKTYHWCACGRSKAQPFCDGSHKGTG-------LAPVAYTPDKAGTAYF----------- 68
Query: 207 CRCWESKKFPLCDGAHR 223
C C SK PLCDG H+
Sbjct: 69 CGCKASKAPPLCDGTHK 85
Score = 37.4 bits (86), Expect = 5e-04
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 90 GHINPNIQKSNSKVVN----VINIEDIADTLALCRCWRMYFNPNIQKSNSKV--VNVINI 143
G + + ++ + + +E T C C R P S+ V
Sbjct: 1 GSSHHHHHHTDPVIAQKAPYPVTVEA-GKTYHWCACGRSKAQPFCDGSHKGTGLAPVAYT 59
Query: 144 EDIADTLALCRCWRSKTFPKCDGSHAQ 170
D A T C C SK P CDG+H
Sbjct: 60 PDKAGTAYFCGCKASKAPPLCDGTHKT 86
Score = 29.3 bits (65), Expect = 0.34
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 207 CRCWESKKFPLCDGAHRAHNERNKDNIGPAIISASNKHNLYM 248
C C SK P CDG+H+ + P + Y
Sbjct: 33 CACGRSKAQPFCDGSHK------GTGLAPVAYTPDKAGTAYF 68
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding
protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Length = 69
Score = 41.8 bits (98), Expect = 9e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 143 IEDIADTLALCRCWRSKTFPKCDGSHAQ 170
+ LCRC S P CDGSH +
Sbjct: 34 LPVEQGQAWLCRCGHSLNKPFCDGSHKR 61
Score = 40.2 bits (94), Expect = 3e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 196 TVFPSDPPLVLCRCWESKKFPLCDGAHR 223
+ LCRC S P CDG+H+
Sbjct: 33 ELPVEQGQAWLCRCGHSLNKPFCDGSHK 60
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding
protein; 1.50A {Pyrobaculum calidifontis}
Length = 60
Score = 38.0 bits (88), Expect = 1e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 IEDIADTLALCRCWRSKTFPKCDGSHA 169
++ + LCRC S + P CDG+HA
Sbjct: 15 VKIGGRAIYLCRCGHSGSKPHCDGTHA 41
Score = 36.1 bits (83), Expect = 9e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 195 FTVFPSDPPLVLCRCWESKKFPLCDGAHR 223
+ V + LCRC S P CDG H
Sbjct: 13 YEVKIGGRAIYLCRCGHSGSKPHCDGTHA 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 47/329 (14%), Positives = 85/329 (25%), Gaps = 130/329 (39%)
Query: 52 GIRKKVDAKSLADFVKYVPYALVLGGISYGVY-----KVISPKG----------HINPNI 96
G K A + K V + + ++ SP+ I+PN
Sbjct: 160 GSGKTWVALDVCLSYK------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 97 QKSNSKVVNV-INIEDIADTLALCRCWRMYFNP-----NIQKSNSKVVNVINIE------ 144
+ N+ + I I L + Y N N+Q N+K N N+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILLT 271
Query: 145 ----DIAD-----------------------TLALCRCW---RSKTFPK--CDGS----- 167
+ D +L + R + P+ +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 168 ----HAQHNQCTGDN--RVN--------------------KHLYKSEDVVTNRFTVFPSD 201
+ T DN VN + ++ +VFP
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-------LSVFPPS 384
Query: 202 ---PPLVLCRCWESKKFPLC-DGAHRAHN----ERNKDNIGPAIISASNKHNLYMNDTSG 253
P ++L W ++ H E+ S + ++Y+ +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE------STISIPSIYL-ELKV 437
Query: 254 NETNVA--HAN--------ENWDSDDKKK 272
N H + + +DSDD
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIP 466
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Length = 191
Score = 29.2 bits (66), Expect = 1.0
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 45 LAERFAEGIRKKVDAKSLADFVKYVPYALVLGGI 78
L + SLA + +LV GG+
Sbjct: 138 LKGVLETNGYDNESSLSLAKQI----ISLVEGGL 167
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural
genomics, PSI, protein structure initiative; 2.00A
{Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Length = 191
Score = 29.2 bits (66), Expect = 1.1
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 45 LAERFAEGIRKKVDAKSLADFVKYVPYALVLGGI 78
A + E + +A L + +++ GGI
Sbjct: 135 FARKLMENGFAEEEANQLGTLI----NSMIEGGI 164
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein
structure initiative; 1.50A {Agrobacterium tumefaciens}
SCOP: a.211.1.1
Length = 207
Score = 26.7 bits (58), Expect = 7.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 141 INIEDIADTLALCRCWRSKTFPKCDGSHAQH 171
+ I DIA LA W +T + AQH
Sbjct: 29 VEIADIAHGLARVARWNGQTRGDHAFTVAQH 59
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein
interaction, histidine kinase, response regulator,
phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB:
3kyi_B*
Length = 145
Score = 26.0 bits (58), Expect = 8.4
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 33 VMTKPRFTLPPGLAERFAEGIRKKVDAKSLA 63
V+ KP T+ L E+ + + + ++L
Sbjct: 115 VVAKPSGTVSHDLEEKTGGELARTM--RTLM 143
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 26.7 bits (59), Expect = 9.6
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 33 VMTKPRFTLPPGLAERFAEGIRKKVDAKSLADF 65
P LAE + + + D+
Sbjct: 97 STQDVSKKGPSALAESVKLDVDEYSEQTLYCDY 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.425
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,149,456
Number of extensions: 239001
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 25
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)