RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4888
         (273 letters)



>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
           fragilis [TaxId: 817]}
          Length = 230

 Score = 28.1 bits (61), Expect = 0.99
 Identities = 18/172 (10%), Positives = 36/172 (20%)

Query: 78  ISYGVYKVISPKGHINPNIQKSNSKVVNVINIEDIADTLALCRCWRMYFNPNIQKSNSKV 137
           +S  VY  +S        +  SN  +V   +   + DT           N      ++KV
Sbjct: 14  LSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKV 73

Query: 138 VNVINIEDIADTLALCRCWRSKTFPKCDGSHAQHNQCTGDNRVNKHLYKSEDVVTNRFTV 197
              I      D +      + K                    V +H +     V+     
Sbjct: 74  TTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMP 133

Query: 198 FPSDPPLVLCRCWESKKFPLCDGAHRAHNERNKDNIGPAIISASNKHNLYMN 249
                            +   +           +        +      +  
Sbjct: 134 LQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPK 185


>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 27.6 bits (61), Expect = 1.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 141 INIEDIADTLALCRCWRSKTFPKCDGSHAQH 171
           + I DIA  LA    W  +T      + AQH
Sbjct: 24  VEIADIAHGLARVARWNGQTRGDHAFTVAQH 54


>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
           gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 159

 Score = 26.7 bits (58), Expect = 2.0
 Identities = 6/43 (13%), Positives = 17/43 (39%)

Query: 110 EDIADTLALCRCWRMYFNPNIQKSNSKVVNVINIEDIADTLAL 152
             + D ++     +++  P I   +   + ++  + I   L L
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL 155


>d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus
          cereus [TaxId: 1396]}
          Length = 108

 Score = 25.3 bits (55), Expect = 4.4
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 38 RFTLPPGLAERFAEGIRKKVDAKSLADFVKY 68
           FT+  G +    E    +   +    F+  
Sbjct: 9  TFTVKEGTSNIVVERFTGEGIIEKFEGFIDL 39


>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 268

 Score = 25.1 bits (53), Expect = 8.9
 Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 6/150 (4%)

Query: 39  FTLPPGL-AERFAEGIRKKVDAKSLADFVKYVPYALVLGGISYGVYKVISPKGHINPNIQ 97
            TLPP L    F E I + +     ++ V+ +     +   SY          H+     
Sbjct: 5   LTLPPKLSLSDFNEFI-QDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDY 63

Query: 98  KSNSKVVNVINIEDIADTLALCR---CWRMYFNPNIQKSNSKVVNVINIEDIAD-TLALC 153
              S +V   N+ D+   + L           +             ++   + D    + 
Sbjct: 64  FLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMN 123

Query: 154 RCWRSKTFPKCDGSHAQHNQCTGDNRVNKH 183
           R                       N +  +
Sbjct: 124 RVLEVNVEGAYCVVEPGVTYHDLHNYLEAN 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,040,760
Number of extensions: 47807
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 9
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)