BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4889
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
Length = 84
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ DK YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 11 KAMINLHIQKDNPKIVHAFDM-EDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 69
Query: 96 LLIKDGKVTGTPGQVP 111
L+IK K + G VP
Sbjct: 70 LIIK--KKETSSGLVP 83
>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
Length = 80
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 26 GTWFICKTH-CKKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLH 84
G F K H K ++N + +K+ + V + + +D+ DK YCRCWRSKKFP CDGAH
Sbjct: 3 GMRFYVKDHRNKAMINLHIQKDNPKIVHAFDM-EDLGDKAVYCRCWRSKKFPFCDGAHTK 61
Query: 85 HNNRTGDNVGPLLIK 99
HN TGDNVGPL+IK
Sbjct: 62 HNEETGDNVGPLIIK 76
>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
Length = 81
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ DK YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 13 KAMINLHIQKDNPKIVHAFDM-EDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 71
Query: 96 LLIK 99
L+IK
Sbjct: 72 LIIK 75
>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel
[2fe- 2s] Cluster Coordination
Length = 79
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ DK YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 13 KAMINLHIQKDNPKIVHAFDM-EDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 71
Query: 96 LLIK 99
L+IK
Sbjct: 72 LIIK 75
>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
Length = 76
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ DK YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDM-EDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 68
Query: 96 LLIK 99
L+IK
Sbjct: 69 LIIK 72
>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant
In Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant
In Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
Length = 76
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ K YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDM-EDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 68
Query: 96 LLIK 99
L+IK
Sbjct: 69 LIIK 72
>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With
Met 62 Replaced By A Gly
pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With
Met 62 Replaced By A Gly
Length = 76
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + +D+ DK YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDG-EDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 68
Query: 96 LLIK 99
L+IK
Sbjct: 69 LIIK 72
>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
Length = 83
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 39 VNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLI 98
+NP +KN+ + V + + K+ YCRCWRS FPLCDG+H+ HN GDNVGPLL+
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLL 80
Query: 99 K 99
K
Sbjct: 81 K 81
>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With
Asp 67 Replaced By A Gly
Length = 76
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ K YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDM-EDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 68
Query: 96 LLIK 99
L+IK
Sbjct: 69 LIIK 72
>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
Length = 77
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + D K YCRCWRSKKFP CDGAH HN TGDNVGP
Sbjct: 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGP 69
Query: 96 LLIK 99
L+IK
Sbjct: 70 LIIK 73
>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
Length = 79
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 36 KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGP 95
K ++N + +K+ + V + + +D+ DK YCRCWRSKKFP CDGA HN TGDNVGP
Sbjct: 14 KAMINLHIQKDNPKIVHAFDM-EDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGP 72
Query: 96 LLIK 99
L+IK
Sbjct: 73 LIIK 76
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 38 LVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLL 97
L+N +K + V + I D K AYCRCWRSK FP CDG+H HN TGDNVGPL+
Sbjct: 18 LINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLI 77
Query: 98 IKDGKV 103
+K +V
Sbjct: 78 LKKKEV 83
>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
Length = 83
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 39 VNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLI 98
+NP +KN+ + V + + K+ YCRCWRS FPLCDG+ + HN GDNVGPLL+
Sbjct: 21 INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLL 80
Query: 99 K 99
K
Sbjct: 81 K 81
>pdb|3TBN|A Chain A, Crystal Structure Of A Miner2 Homolog: A Type 6 Cdgsh
Iron-Sulfur Protein
Length = 87
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 54 YAIIDDMKDKNAYCRCWRSKKFPLCDGAH 82
Y + + +C C RSK P CDG+H
Sbjct: 20 YPVTVEAGKTYHWCACGRSKAQPFCDGSH 48
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 46 NQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAH 82
++ + A D +C C SK PLCDG H
Sbjct: 48 HKGTGLAPVAYTPDKAGTAYFCGCKASKAPPLCDGTH 84
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 308 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 347
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 2 NFKEKNLAKEIEEVSFTSNKPTNLGTWFI---CKTHCKKLVNPNQKKNQSRA 50
NFKE+ K ++ +S + N TWF+ C+ + +++ ++ N RA
Sbjct: 54 NFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRA 105
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 308 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 347
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 308 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 347
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo Structure,
Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In Complex
With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq1
Length = 386
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With 2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized At
Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In
Complex With Queuine
Length = 385
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 308 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGEILGAMLMTE 347
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v,
A232s, V233g- Apo-Structure
pdb|3BLL|A Chain A, Tgt Mutant In Complex With Boc-Preq1
pdb|3BLO|A Chain A, Tgt Mutant In Complex With Queuine
Length = 386
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGEILGAMLMTE 348
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With
7-Deaza-7- Aminomethyl-Guanine
Length = 385
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 308 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGEILGAMLMTE 347
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKW---SRAYIHHLIRAGEILGAMLMTE 348
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Preq1
pdb|4H6E|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
Apo Structure
Length = 386
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGEILGAMLMTE 348
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Queuine
Length = 385
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 308 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGEILGAMLMTE 347
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure
pdb|3BLD|A Chain A, Trna Guanine Transglycosylase V233g Mutant Preq1 Complex
Structure
Length = 386
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G+ +G +L+ +
Sbjct: 309 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGEILGAMLMTE 348
>pdb|3P0S|A Chain A, Crystal Structure Of Bombyx Mori Densovirus 1 Capsid
Length = 494
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 41 PNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
P + N + V Y +D AY +CW K+F +G + G+ V PL +
Sbjct: 233 PYFENNVPKDVGIYDYVDIKNGTTAYGKCWE-KRFKPTNGLLYAESTLKGNVVTPLAAQP 291
Query: 101 GKV-TGTPGQVPLSGLPDEHRRYQVDLT 127
+ T PG + ++ R + DLT
Sbjct: 292 TNIMTPIPGLENGYFMSNDQIRERRDLT 319
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 58 DDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKD 100
+D+K ++ C C +K+ A++HH R G +G +L+ +
Sbjct: 311 EDLKPLDSECHCAVCQKWSR---AYIHHLIRAGQILGAMLMTE 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,724,070
Number of Sequences: 62578
Number of extensions: 199313
Number of successful extensions: 329
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 41
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)