Query psy4889
Match_columns 131
No_of_seqs 167 out of 522
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 20:22:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3461|consensus 100.0 7.4E-32 1.6E-36 205.1 4.7 96 6-102 29-131 (132)
2 smart00704 ZnF_CDGSH CDGSH-typ 99.6 2.3E-15 5E-20 93.4 3.6 33 54-87 5-37 (38)
3 PF09360 zf-CDGSH: Iron-bindin 99.5 3.4E-15 7.3E-20 92.4 2.2 37 45-83 2-38 (38)
4 KOG4605|consensus 99.3 2.4E-12 5.1E-17 98.3 5.0 88 10-102 2-93 (129)
5 COG3369 Zinc finger domain con 99.3 2.5E-12 5.4E-17 91.4 3.2 28 61-88 28-55 (78)
6 KOG4605|consensus 97.7 3.4E-05 7.4E-10 59.4 3.0 25 61-85 94-118 (129)
7 PF11966 SSURE: Fibronectin-bi 50.4 9.8 0.00021 27.6 1.4 23 106-128 7-29 (81)
8 PF10660 MitoNEET_N: Iron-cont 21.9 35 0.00075 23.5 0.3 33 3-35 28-63 (64)
9 PF14354 Lar_restr_allev: Rest 21.0 41 0.00089 21.2 0.5 6 75-81 6-11 (61)
10 TIGR03135 malonate_mdcG holo-A 16.9 85 0.0018 25.2 1.6 26 94-121 34-61 (202)
No 1
>KOG3461|consensus
Probab=99.97 E-value=7.4e-32 Score=205.14 Aligned_cols=96 Identities=45% Similarity=0.799 Sum_probs=83.6
Q ss_pred cchHHHHHHHh---hccCCccCcc---eeeeecccC-CccccccccccCCeeeeeeeeeecCCCceEEEecCCCCCCCCC
Q psy4889 6 KNLAKEIEEVS---FTSNKPTNLG---TWFICKTHC-KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLC 78 (131)
Q Consensus 6 ~~~a~~l~~v~---f~ss~s~~~g---~~f~~k~~~-~~~vN~~I~Kdgpk~VV~~~diEd~~~k~~~CrCg~Skn~PfC 78 (131)
.-+-+|+++|. |+++.-.-++ ..|+.+..+ +.++|..||||+|| |||.|||||++++++|||||+|++||||
T Consensus 29 ~~~~~~~~~v~~p~v~~~ta~~~y~ay~r~~~k~~~n~a~iN~hIqkd~pK-IVd~~d~eDl~~ka~yCrCWrs~kfP~C 107 (132)
T KOG3461|consen 29 LGTVKDIAAVTPPCVAAGTAATAYLAYKRFYVKDHQNKARINLHIQKDNPK-IVDAFDMEDLGDKAAYCRCWRSKKFPLC 107 (132)
T ss_pred hccccchhhcCCcceecchhhhhhhhheeeeeeecccCccccceeecCCCc-eeEEEehhhhcccceEEEeeccCCcccc
Confidence 34567888885 8877323333 367777766 89999999999999 9999999999999999999999999999
Q ss_pred CcccccCcCCCCCCcCceeEEecc
Q psy4889 79 DGAHLHHNNRTGDNVGPLLIKDGK 102 (131)
Q Consensus 79 DGSH~~~~~etGdnvgPlii~~k~ 102 (131)
||||.+||++||||+|||+|++++
T Consensus 108 DGsh~KhNk~tgdNvgpliikk~~ 131 (132)
T KOG3461|consen 108 DGSHGKHNKETGDNVGPLIIKKKE 131 (132)
T ss_pred cCcccccccccccccccceeeecc
Confidence 999999999999999999999986
No 2
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=99.56 E-value=2.3e-15 Score=93.42 Aligned_cols=33 Identities=48% Similarity=0.998 Sum_probs=28.3
Q ss_pred eeeeecCCCceEEEecCCCCCCCCCCcccccCcC
Q psy4889 54 YAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNN 87 (131)
Q Consensus 54 ~~diEd~~~k~~~CrCg~Skn~PfCDGSH~~~~~ 87 (131)
.|++|. +..++||+||+|+|+|||||||...++
T Consensus 5 ~~~~e~-~~~~~lC~C~~S~~~PfCDGsH~~~~~ 37 (38)
T smart00704 5 EVEVEK-REKYALCRCGRSKNFPYCDGSHKKHNE 37 (38)
T ss_pred EEEecC-CCEEEEeeCCCCCCCCccCCcccCcCc
Confidence 456665 678999999999999999999998765
No 3
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=99.53 E-value=3.4e-15 Score=92.36 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=23.1
Q ss_pred ccCCeeeeeeeeeecCCCceEEEecCCCCCCCCCCcccc
Q psy4889 45 KNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHL 83 (131)
Q Consensus 45 Kdgpk~VV~~~diEd~~~k~~~CrCg~Skn~PfCDGSH~ 83 (131)
+++|. +|+. +.+....+++|||||+|+|+|||||||+
T Consensus 2 ~~~P~-~v~g-~~~~~~~~~~lC~Cg~S~~~PfCDGsH~ 38 (38)
T PF09360_consen 2 DNGPY-KVEG-DTELEKGTYALCRCGKSKNKPFCDGSHK 38 (38)
T ss_dssp TTSSE-EEEE-CGGCSTSEEEE-SSS--TTTTB--SHHH
T ss_pred CCcCE-EEEe-eEEecCCEEEEecCCCCCCCCccCCcCC
Confidence 35677 5443 3333358899999999999999999995
No 4
>KOG4605|consensus
Probab=99.31 E-value=2.4e-12 Score=98.32 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHhhccC-CccCcceeeeecccCCccccccccccCCeeeeee--eeeecC-CCceEEEecCCCCCCCCCCcccccC
Q psy4889 10 KEIEEVSFTSN-KPTNLGTWFICKTHCKKLVNPNQKKNQSRAVVDY--AIIDDM-KDKNAYCRCWRSKKFPLCDGAHLHH 85 (131)
Q Consensus 10 ~~l~~v~f~ss-~s~~~g~~f~~k~~~~~~vN~~I~Kdgpk~VV~~--~diEd~-~~k~~~CrCg~Skn~PfCDGSH~~~ 85 (131)
.|++..+++++ ++...+.. .+.....-.......+..+. |.+. +.++.. +++|.||.||+|++||||||||+..
T Consensus 2 ~~~a~acls~aak~q~s~~g-kp~~~~~~~~ta~~lp~~g~-v~~k~p~KVhL~a~KtY~WCsCG~S~sQPfCDGsHk~~ 79 (129)
T KOG4605|consen 2 RGRAGACLSPAAKGQRSLNG-KPDISSWLAQTAPRLPARGV-VALKTPIKVHLVAGKTYRWCSCGRSKSQPFCDGSHKFQ 79 (129)
T ss_pred cccchhhhcccccccccccC-CCCchhhccccccccccCce-ecccCceEEEEecCCEEEEEeccccCCCcccccccccc
Confidence 47777888777 33333221 11111112222334455555 5443 334433 5679999999999999999999864
Q ss_pred cCCCCCCcCceeEEecc
Q psy4889 86 NNRTGDNVGPLLIKDGK 102 (131)
Q Consensus 86 ~~etGdnvgPlii~~k~ 102 (131)
. -.++.|+.|+.++
T Consensus 80 ~---~tklrPvrFkvek 93 (129)
T KOG4605|consen 80 G---RTKLRPVRFKVEK 93 (129)
T ss_pred c---cccccceEeEecc
Confidence 3 4679999999875
No 5
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=99.27 E-value=2.5e-12 Score=91.37 Aligned_cols=28 Identities=36% Similarity=0.788 Sum_probs=25.4
Q ss_pred CCceEEEecCCCCCCCCCCcccccCcCC
Q psy4889 61 KDKNAYCRCWRSKKFPLCDGAHLHHNNR 88 (131)
Q Consensus 61 ~~k~~~CrCg~Skn~PfCDGSH~~~~~e 88 (131)
...+++||||.|.|+|||||||++..|+
T Consensus 28 ~~~~~LCrCG~S~NKPfCDGtH~k~gf~ 55 (78)
T COG3369 28 DEQAALCRCGHSENKPFCDGTHKKTGFD 55 (78)
T ss_pred ceEEEEEeccCcCCCCccCCcccccccc
Confidence 4678999999999999999999998775
No 6
>KOG4605|consensus
Probab=97.67 E-value=3.4e-05 Score=59.35 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=22.7
Q ss_pred CCceEEEecCCCCCCCCCCcccccC
Q psy4889 61 KDKNAYCRCWRSKKFPLCDGAHLHH 85 (131)
Q Consensus 61 ~~k~~~CrCg~Skn~PfCDGSH~~~ 85 (131)
.+.|++|.|+++.+-|||||+|+..
T Consensus 94 tg~~wlCnCKqT~~rP~CDGtH~~~ 118 (129)
T KOG4605|consen 94 TGMVWLCNCKQTQRRPYCDGTHRSE 118 (129)
T ss_pred cceEEeecccccCCCCccCCccccc
Confidence 5779999999999999999999853
No 7
>PF11966 SSURE: Fibronectin-binding repeat; InterPro: IPR021021 Streptococcal surface repeat domain - SSURE - is a protein fragment found to bind to extracellular matrix protein fibronectin but not to collagen or submaxillary mucin in Streptococci. Anti-SSURE antibodies recognised the corresponding protein on the surface of streptococcal cells. The full-length proteins are thus fibronectin-binding surface adhesins []. The proteins are further characterised by having an N-terminal motif resembling [YF]SIRKxxxGxxS[VIA] IPR005877 from INTERPRO and a C-terminal LPXTG motif-containing region which is a characteristic of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall (see IPR019931 from INTERPRO).
Probab=50.42 E-value=9.8 Score=27.61 Aligned_cols=23 Identities=48% Similarity=0.816 Sum_probs=21.2
Q ss_pred CCCCccCCCCCchhhceeccccC
Q psy4889 106 TPGQVPLSGLPDEHRRYQVDLTG 128 (131)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~ 128 (131)
.|+-.||++|+.-.--|||+|.|
T Consensus 7 np~L~Pl~~l~kGkYFYqV~L~G 29 (81)
T PF11966_consen 7 NPALLPLEGLTKGKYFYQVDLNG 29 (81)
T ss_pred CCCCCCccccCCccEEEEEecCC
Confidence 47889999999999999999988
No 8
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=21.89 E-value=35 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=3.2
Q ss_pred ccccchHHHHHHHhhccCCc---cCcceeeeecccC
Q psy4889 3 FKEKNLAKEIEEVSFTSNKP---TNLGTWFICKTHC 35 (131)
Q Consensus 3 ~~~~~~a~~l~~v~f~ss~s---~~~g~~f~~k~~~ 35 (131)
|.+-...+||+.+.|.+.-. --++++|+||+++
T Consensus 28 ~f~Ls~kdWl~Lvp~~~~va~igYlayk~f~pk~~~ 63 (64)
T PF10660_consen 28 FFKLSVKDWLALVPFAAAVAGIGYLAYKPFCPKKKC 63 (64)
T ss_dssp ----------------------------CC---STT
T ss_pred cccccHHHHHHHHhHHHHHHHHHHHhheeecccccC
Confidence 44556789999998777631 1233688888653
No 9
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.02 E-value=41 Score=21.17 Aligned_cols=6 Identities=50% Similarity=1.553 Sum_probs=4.5
Q ss_pred CCCCCcc
Q psy4889 75 FPLCDGA 81 (131)
Q Consensus 75 ~PfCDGS 81 (131)
=||| |+
T Consensus 6 CPFC-G~ 11 (61)
T PF14354_consen 6 CPFC-GS 11 (61)
T ss_pred CCCC-CC
Confidence 4999 74
No 10
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=16.95 E-value=85 Score=25.22 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=19.3
Q ss_pred CceeEEeccccCCCCCccCCCCC--chhhc
Q psy4889 94 GPLLIKDGKVTGTPGQVPLSGLP--DEHRR 121 (131)
Q Consensus 94 gPlii~~k~~~~~~~~~~~~~~~--~~~~~ 121 (131)
-|+||.. ...-.+|+||| ||| -..|+
T Consensus 34 ~P~VVrR-~~~~~~g~v~v-Glrlpg~~~~ 61 (202)
T TIGR03135 34 RPLVVRR-AAPADAGQVAL-GLRLPGAARK 61 (202)
T ss_pred CcEEEEe-cCCCCCCEeEE-eccCCCCCCC
Confidence 4999999 65666899998 666 66663
Done!