Query psy4889
Match_columns 131
No_of_seqs 167 out of 522
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:22:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fnv_A CDGSH iron sulfur domai 100.0 5.6E-32 1.9E-36 191.9 2.4 77 26-103 4-83 (83)
2 4ezf_A Mitoneet, CDGSH iron-su 100.0 9.9E-32 3.4E-36 188.5 2.8 74 28-102 1-76 (77)
3 3s2r_A AT5G51720/MIO24_14; red 99.9 3.8E-29 1.3E-33 177.3 1.6 64 37-101 19-83 (83)
4 3ew0_A Mitoneet, CDGSH iron su 99.9 1.3E-28 4.5E-33 173.3 3.2 76 26-102 3-79 (80)
5 3tbm_A Putative uncharacterize 99.6 4.7E-16 1.6E-20 106.6 3.1 51 38-88 7-65 (69)
6 3tbo_A Zinc finger, CDGSH-type 99.5 3.3E-15 1.1E-19 100.4 2.0 44 40-89 4-47 (60)
7 3tbn_A Putative uncharacterize 99.4 3E-13 1E-17 96.4 5.0 51 41-102 12-62 (87)
8 3tbn_A Putative uncharacterize 98.9 7.2E-10 2.5E-14 79.0 2.2 24 61-84 63-86 (87)
9 2j5h_A Teratocarcinoma-derived 38.9 10 0.00036 23.5 1.0 20 61-80 15-41 (41)
10 1yop_A KTI11P; zinc finger, me 30.2 19 0.00064 24.7 1.2 9 62-70 20-29 (83)
11 3u7d_B Protein HEG homolog 1; 30.1 16 0.00054 20.6 0.7 17 106-122 7-23 (26)
12 2jr7_A DPH3 homolog; DESR1, CS 27.1 17 0.00057 25.4 0.5 11 62-72 20-31 (89)
13 1wge_A Hypothetical protein 26 24.6 20 0.00068 24.6 0.5 11 62-72 27-38 (83)
14 2cos_A Serine/threonine protei 20.7 33 0.0011 22.2 0.9 12 10-21 43-54 (54)
No 1
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.6e-32 Score=191.93 Aligned_cols=77 Identities=48% Similarity=0.868 Sum_probs=64.3
Q ss_pred ceeeeecccC--CccccccccccCCeeeeeeeeeecCC-CceEEEecCCCCCCCCCCcccccCcCCCCCCcCceeEEecc
Q psy4889 26 GTWFICKTHC--KKLVNPNQKKNQSRAVVDYAIIDDMK-DKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKDGK 102 (131)
Q Consensus 26 g~~f~~k~~~--~~~vN~~I~Kdgpk~VV~~~diEd~~-~k~~~CrCg~Skn~PfCDGSH~~~~~etGdnvgPlii~~k~ 102 (131)
+++||++.++ +++||..|++++|+ ||+.+|||+++ ++++|||||+|+++|||||||.++++++|||+|||+|++++
T Consensus 4 y~~~~~~~~~~k~~~vN~~I~k~~pK-vVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k~ 82 (83)
T 3fnv_A 4 MRPFLPKKKQQKDSLINLKIQKENPK-VVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKKE 82 (83)
T ss_dssp ------------CCCSCSSSCTTSSS-EEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECCC
T ss_pred chhhccccccCcccccCcceecCCCc-EeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEecc
Confidence 4689998876 58999999999999 99999999999 89999999999999999999999999999999999999987
Q ss_pred c
Q psy4889 103 V 103 (131)
Q Consensus 103 ~ 103 (131)
+
T Consensus 83 ~ 83 (83)
T 3fnv_A 83 V 83 (83)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.97 E-value=9.9e-32 Score=188.47 Aligned_cols=74 Identities=51% Similarity=0.994 Sum_probs=69.5
Q ss_pred eeeecccC-CccccccccccCCeeeeeeeeeecCCC-ceEEEecCCCCCCCCCCcccccCcCCCCCCcCceeEEecc
Q psy4889 28 WFICKTHC-KKLVNPNQKKNQSRAVVDYAIIDDMKD-KNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKDGK 102 (131)
Q Consensus 28 ~f~~k~~~-~~~vN~~I~Kdgpk~VV~~~diEd~~~-k~~~CrCg~Skn~PfCDGSH~~~~~etGdnvgPlii~~k~ 102 (131)
+||.+.++ +++||..|++++|+ ||+.+|||++++ +++|||||+|+++|||||||.++|+++|+|+|||+|++++
T Consensus 1 ~~~~k~~~~~~~vN~~i~kd~pK-VVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~ 76 (77)
T 4ezf_A 1 RFYVKDHRNKAMINLHIQKDNPK-IVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 76 (77)
T ss_dssp -CCSCCCSCTTCSCSSSCTTSSS-EEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBC
T ss_pred CccccccCcccccccceecCCCc-EeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEecc
Confidence 36777776 89999999999999 999999999998 9999999999999999999999999999999999999886
No 3
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.95 E-value=3.8e-29 Score=177.34 Aligned_cols=64 Identities=48% Similarity=1.045 Sum_probs=61.0
Q ss_pred ccccccccccCCeeeeeeeeeecCC-CceEEEecCCCCCCCCCCcccccCcCCCCCCcCceeEEec
Q psy4889 37 KLVNPNQKKNQSRAVVDYAIIDDMK-DKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKDG 101 (131)
Q Consensus 37 ~~vN~~I~Kdgpk~VV~~~diEd~~-~k~~~CrCg~Skn~PfCDGSH~~~~~etGdnvgPlii~~k 101 (131)
++||..|+|+++| |||.+|||+++ ++++|||||+|+++|||||||.++|+++|||+||++|++.
T Consensus 19 ~~vN~~I~K~~~K-VVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk~ 83 (83)
T 3s2r_A 19 GGINPEIRKNEDK-VVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKKQ 83 (83)
T ss_dssp -CCCSSTTTTSSS-CCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEECC
T ss_pred CccCchhhcCCCc-eecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEecC
Confidence 6899999999999 99999999998 6899999999999999999999999999999999999863
No 4
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.94 E-value=1.3e-28 Score=173.29 Aligned_cols=76 Identities=51% Similarity=0.994 Sum_probs=71.2
Q ss_pred ceeeeecccC-CccccccccccCCeeeeeeeeeecCCCceEEEecCCCCCCCCCCcccccCcCCCCCCcCceeEEecc
Q psy4889 26 GTWFICKTHC-KKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKDGK 102 (131)
Q Consensus 26 g~~f~~k~~~-~~~vN~~I~Kdgpk~VV~~~diEd~~~k~~~CrCg~Skn~PfCDGSH~~~~~etGdnvgPlii~~k~ 102 (131)
|.+||++..+ +.++|+.|.+++|+ +|+.+++|+++++++|||||+|+|+|||||||.++++++|+|+|||+|++++
T Consensus 3 ~~~~~~~~~~~~~~vni~I~k~gP~-~V~~~~led~~~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~~ 79 (80)
T 3ew0_A 3 GMRFYVKDHRNKAMINLHIQKDNPK-IVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 79 (80)
T ss_dssp CCCCCCCCCCCCCCSCSSSCTTSSS-EEEEECGGGCCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECCC
T ss_pred CccccccccCCCCccCeEEeCCCCE-EEEeeccccCCCeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEecc
Confidence 4689988765 78999999999999 9999999998999999999999999999999999999999999999999885
No 5
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.58 E-value=4.7e-16 Score=106.57 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=42.1
Q ss_pred cccccccccCCeeeeeeeeeecCC--------CceEEEecCCCCCCCCCCcccccCcCC
Q psy4889 38 LVNPNQKKNQSRAVVDYAIIDDMK--------DKNAYCRCWRSKKFPLCDGAHLHHNNR 88 (131)
Q Consensus 38 ~vN~~I~Kdgpk~VV~~~diEd~~--------~k~~~CrCg~Skn~PfCDGSH~~~~~e 88 (131)
.+.+.|.+|||..|.+.+.|++.. ..++|||||+|+|+|||||||+...|+
T Consensus 7 ~~~I~v~~nGPl~V~G~v~i~~~dG~~~~~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~ 65 (69)
T 3tbm_A 7 DVVITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHKRVEFD 65 (69)
T ss_dssp -CEEEECTTSCEEEESSCEEEESSCCEECCBTTEEEECCSSCCSSTTBCCSHHHHTTCC
T ss_pred ceEEEEeCCCCEEEECCCeEECCCCCEEeeCCCEEEEeeCCCCCCCCccCCCcCCCCcc
Confidence 456889999999777778777543 458999999999999999999987765
No 6
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.51 E-value=3.3e-15 Score=100.40 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=34.2
Q ss_pred cccccccCCeeeeeeeeeecCCCceEEEecCCCCCCCCCCcccccCcCCC
Q psy4889 40 NPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRT 89 (131)
Q Consensus 40 N~~I~Kdgpk~VV~~~diEd~~~k~~~CrCg~Skn~PfCDGSH~~~~~et 89 (131)
.+.+..++|. +|. ++ +++++|||||+|+|+|||||||+..+++.
T Consensus 4 ~I~v~~ngP~-~v~---~e--~~~~~lC~CG~S~n~PFCDGSHk~~~f~~ 47 (60)
T 3tbo_A 4 EIRAIENGPY-EVK---IG--GRAIYLCRCGHSGSKPHCDGTHAKVGFKA 47 (60)
T ss_dssp EEEECTTSCE-EEE---C-----CEEECCSSCCTTTTBCCSHHHHHTCCC
T ss_pred EEEEeCCCCE-EEE---EC--CcEEEEEECCCCCCCCccCCcCCCCcccc
Confidence 4678889999 554 44 46789999999999999999999877653
No 7
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.38 E-value=3e-13 Score=96.42 Aligned_cols=51 Identities=25% Similarity=0.540 Sum_probs=38.8
Q ss_pred ccccccCCeeeeeeeeeecCCCceEEEecCCCCCCCCCCcccccCcCCCCCCcCceeEEecc
Q psy4889 41 PNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKDGK 102 (131)
Q Consensus 41 ~~I~Kdgpk~VV~~~diEd~~~k~~~CrCg~Skn~PfCDGSH~~~~~etGdnvgPlii~~k~ 102 (131)
..|...+|. + +++++ +..|+||+||+|+|+|||||||+.. ++.|+.++.++
T Consensus 12 ~~~~~~~P~-~---v~le~-g~~~~~C~CG~S~~~PfCDGSH~~~------~f~P~~f~~e~ 62 (87)
T 3tbn_A 12 PVIAQKAPY-P---VTVEA-GKTYHWCACGRSKAQPFCDGSHKGT------GLAPVAYTPDK 62 (87)
T ss_dssp CCCSCSSCE-E---EEECT-TCCEEECSSSCCSSTTBCCSTTTTT------TCCCEEECCSS
T ss_pred cccccCCCE-E---EEeCC-CCEEEEeeCCCCCCCCCcCCccccC------CccceEEEECC
Confidence 446666666 3 23343 5679999999999999999999863 47899998775
No 8
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=98.85 E-value=7.2e-10 Score=79.01 Aligned_cols=24 Identities=42% Similarity=0.834 Sum_probs=22.1
Q ss_pred CCceEEEecCCCCCCCCCCccccc
Q psy4889 61 KDKNAYCRCWRSKKFPLCDGAHLH 84 (131)
Q Consensus 61 ~~k~~~CrCg~Skn~PfCDGSH~~ 84 (131)
.++++||+|++|+|.|||||||++
T Consensus 63 ~~~~~lC~CK~T~n~PfCDGsH~~ 86 (87)
T 3tbn_A 63 AGTAYFCGCKASKAPPLCDGTHKT 86 (87)
T ss_dssp CEEEEECSSSCCSSTTBCCSGGGT
T ss_pred CcEEEEecCCCCCCCCccCCcCCc
Confidence 567999999999999999999985
No 9
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=38.89 E-value=10 Score=23.47 Aligned_cols=20 Identities=40% Similarity=1.044 Sum_probs=13.8
Q ss_pred CCceEEEecCCC-------CCCCCCCc
Q psy4889 61 KDKNAYCRCWRS-------KKFPLCDG 80 (131)
Q Consensus 61 ~~k~~~CrCg~S-------kn~PfCDG 80 (131)
..+-.+||||.. ...|=|||
T Consensus 15 ~k~C~LCRC~~G~LhCfp~~~~~~CD~ 41 (41)
T 2j5h_A 15 PKKCSLCRCWHGQLHCLPQTFLPGCDX 41 (41)
T ss_dssp SCCCCCCCCCSSSCCSCCSSSSTTCC-
T ss_pred ecCceEEEeecCceEEcccccCCCCCC
Confidence 356789999975 46677776
No 10
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=30.23 E-value=19 Score=24.74 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=6.3
Q ss_pred Cce-EEEecC
Q psy4889 62 DKN-AYCRCW 70 (131)
Q Consensus 62 ~k~-~~CrCg 70 (131)
..+ +-||||
T Consensus 20 ~~y~ypCrCG 29 (83)
T 1yop_A 20 QMFTYPCPCG 29 (83)
T ss_dssp TEEEEEETTT
T ss_pred CEEEEeCCCC
Confidence 444 559999
No 11
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=30.09 E-value=16 Score=20.62 Aligned_cols=17 Identities=47% Similarity=0.516 Sum_probs=15.2
Q ss_pred CCCCccCCCCCchhhce
Q psy4889 106 TPGQVPLSGLPDEHRRY 122 (131)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ 122 (131)
-|||.-+|-+.|+.||.
T Consensus 7 ypgqynpsfisddsrrr 23 (26)
T 3u7d_B 7 FPGQYNPSFISDESRRR 23 (26)
T ss_pred ccCccCcccccCcchhc
Confidence 58999999999999985
No 12
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=27.14 E-value=17 Score=25.39 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=7.3
Q ss_pred Cce-EEEecCCC
Q psy4889 62 DKN-AYCRCWRS 72 (131)
Q Consensus 62 ~k~-~~CrCg~S 72 (131)
..+ +-||||..
T Consensus 20 ~~y~ypCrCGd~ 31 (89)
T 2jr7_A 20 ETYFYPCPCGDN 31 (89)
T ss_dssp TEEEEECTTSSE
T ss_pred CEEEEcCCCCCE
Confidence 444 55999865
No 13
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=24.64 E-value=20 Score=24.59 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=7.1
Q ss_pred Cce-EEEecCCC
Q psy4889 62 DKN-AYCRCWRS 72 (131)
Q Consensus 62 ~k~-~~CrCg~S 72 (131)
..+ +-||||..
T Consensus 27 ~~y~y~CrCGd~ 38 (83)
T 1wge_A 27 ETYFYPCPCGDN 38 (83)
T ss_dssp TEEEECCSSSSC
T ss_pred CEEEEeCCCCCE
Confidence 344 44999864
No 14
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.67 E-value=33 Score=22.23 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=9.7
Q ss_pred HHHHHHhhccCC
Q psy4889 10 KEIEEVSFTSNK 21 (131)
Q Consensus 10 ~~l~~v~f~ss~ 21 (131)
.||++++|-+++
T Consensus 43 ewL~k~~~~~~~ 54 (54)
T 2cos_A 43 EYISKMSGPSSG 54 (54)
T ss_dssp HHHHHHSCSCCC
T ss_pred HHHHHhcCCCCC
Confidence 599999987764
Done!