Query psy4889
Match_columns 131
No_of_seqs 167 out of 522
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 20:22:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ha1 g.3.11.7 (A:1-39) Crip 25.8 7.6 0.00055 22.4 0.2 14 60-73 13-26 (39)
2 d1d0qa_ g.41.3.2 (A:) Zinc-bin 16.5 32 0.0023 21.7 1.8 16 62-83 32-47 (102)
3 d1txka1 b.1.18.2 (A:397-511) G 14.0 39 0.0028 22.1 1.8 17 114-130 23-39 (115)
4 d1sddb1 b.6.1.3 (B:1657-1723) 13.8 42 0.0031 20.1 1.8 25 88-112 43-67 (67)
5 d1cd0a_ b.1.1.1 (A:) Immunoglo 9.4 52 0.0038 20.0 1.1 19 62-80 86-104 (111)
6 d1yoba1 c.23.5.1 (A:1-179) Fla 8.9 71 0.0052 21.8 1.8 24 61-84 88-113 (179)
7 d2ix0a3 b.40.4.5 (A:558-644) E 8.4 32 0.0023 21.4 -0.3 22 102-123 24-45 (87)
8 d1ozbi_ g.74.1.1 (I:) Preprote 8.0 45 0.0033 17.5 0.3 16 66-81 6-21 (26)
9 d1nyra3 d.67.1.1 (A:63-241) Th 7.7 93 0.0068 21.0 2.0 34 62-101 105-138 (179)
10 d1dkca_ g.3.4.2 (A:) Antifunga 7.5 79 0.0058 17.6 1.3 15 68-82 9-23 (38)
No 1
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.83 E-value=7.6 Score=22.42 Aligned_cols=14 Identities=36% Similarity=1.179 Sum_probs=11.0
Q ss_pred CCCceEEEecCCCC
Q psy4889 60 MKDKNAYCRCWRSK 73 (131)
Q Consensus 60 ~~~k~~~CrCg~Sk 73 (131)
+.++-++||||+..
T Consensus 13 ~~k~CslCrC~~G~ 26 (39)
T d2j5ha1 13 LPKKCSLCRCWHGQ 26 (39)
T ss_dssp SSCCCCCCCCCSSS
T ss_pred ecccceEEEeccCc
Confidence 35678999999864
No 2
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.46 E-value=32 Score=21.69 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=12.3
Q ss_pred CceEEEecCCCCCCCCCCcccc
Q psy4889 62 DKNAYCRCWRSKKFPLCDGAHL 83 (131)
Q Consensus 62 ~k~~~CrCg~Skn~PfCDGSH~ 83 (131)
++.++|.| |||+..|.
T Consensus 32 G~~~~~~C------Pfh~d~~~ 47 (102)
T d1d0qa_ 32 GRNYFGLC------PFHGEKTP 47 (102)
T ss_dssp TTEEEECC------SSSCCSSC
T ss_pred CCceEEec------cccCCCCc
Confidence 56678999 99987653
No 3
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.98 E-value=39 Score=22.10 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=13.9
Q ss_pred CCCchhhceeccccCCC
Q psy4889 114 GLPDEHRRYQVDLTGGP 130 (131)
Q Consensus 114 ~~~~~~~~~~~~~~~~~ 130 (131)
.-|+..|||-||++||+
T Consensus 23 ~~~~g~~~fvVDF~G~~ 39 (115)
T d1txka1 23 RQPDGTIAFVVDFTGAE 39 (115)
T ss_dssp CCCCSEEEEEEEEECTT
T ss_pred cCCCCcEEEEEECCCCc
Confidence 35778899999999875
No 4
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.78 E-value=42 Score=20.14 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=16.9
Q ss_pred CCCCCcCceeEEeccccCCCCCccC
Q psy4889 88 RTGDNVGPLLIKDGKVTGTPGQVPL 112 (131)
Q Consensus 88 etGdnvgPlii~~k~~~~~~~~~~~ 112 (131)
..-+-+||+||.++..-..-|+.||
T Consensus 43 ~~~GL~G~liV~~~g~l~~~~~~p~ 67 (67)
T d1sddb1 43 IHSGLIGPLLICRKGTLDKETNMPV 67 (67)
T ss_dssp HTTTCEEEEEEECTTSSCTTSCCCS
T ss_pred hhCCceEEEEEcCCCCcccccCCCC
Confidence 3556899999998865555555443
No 5
>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
Probab=9.39 E-value=52 Score=19.99 Aligned_cols=19 Identities=16% Similarity=0.642 Sum_probs=12.2
Q ss_pred CceEEEecCCCCCCCCCCc
Q psy4889 62 DKNAYCRCWRSKKFPLCDG 80 (131)
Q Consensus 62 ~k~~~CrCg~Skn~PfCDG 80 (131)
.-.+||++|.+...-|=.|
T Consensus 86 sa~YyCA~~~~~~~~FG~G 104 (111)
T d1cd0a_ 86 EADYYCQSYDARNVVFGGG 104 (111)
T ss_dssp CEEEEEEEEETTEEEEBCC
T ss_pred CcEEEEeeccCCCCEECCC
Confidence 4479999986655444333
No 6
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=8.93 E-value=71 Score=21.78 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=19.1
Q ss_pred CCceEEEecCCCCCCC--CCCccccc
Q psy4889 61 KDKNAYCRCWRSKKFP--LCDGAHLH 84 (131)
Q Consensus 61 ~~k~~~CrCg~Skn~P--fCDGSH~~ 84 (131)
+.+++++.||-|...+ |||+....
T Consensus 88 g~~~avfGlGDs~~~~~~Fc~a~~~l 113 (179)
T d1yoba1 88 GKTVALFGLGDQVGYPENYLDALGEL 113 (179)
T ss_dssp TCEEEEEEECCTTTCTTTTTHHHHHH
T ss_pred CcEEEEEEecCCcccchhHHHHHHHH
Confidence 4678999999998655 99998643
No 7
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=8.44 E-value=32 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=18.2
Q ss_pred cccCCCCCccCCCCCchhhcee
Q psy4889 102 KVTGTPGQVPLSGLPDEHRRYQ 123 (131)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~ 123 (131)
..++.-|-||+|.|+++..+|.
T Consensus 24 ~e~~~eGlI~~s~L~~d~y~~d 45 (87)
T d2ix0a3 24 VDNGAIAFIPAPFLHAVRDELV 45 (87)
T ss_dssp TTTCCEEEEEGGGTCSCGGGEE
T ss_pred ecCCcEEEEEehhCCCceEEEe
Confidence 4677889999999999877664
No 8
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=8.04 E-value=45 Score=17.46 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=14.1
Q ss_pred EEecCCCCCCCCCCcc
Q psy4889 66 YCRCWRSKKFPLCDGA 81 (131)
Q Consensus 66 ~CrCg~Skn~PfCDGS 81 (131)
-|-||..+++=-|-|.
T Consensus 6 ~CpCgSgkkyK~C~G~ 21 (26)
T d1ozbi_ 6 PCPCGSGKKYKHCHGS 21 (26)
T ss_dssp BCTTTCSSBGGGTTTC
T ss_pred cCCCCCCccHHHcCCc
Confidence 5999999999999885
No 9
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=7.71 E-value=93 Score=21.01 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.4
Q ss_pred CceEEEecCCCCCCCCCCcccccCcCCCCCCcCceeEEec
Q psy4889 62 DKNAYCRCWRSKKFPLCDGAHLHHNNRTGDNVGPLLIKDG 101 (131)
Q Consensus 62 ~k~~~CrCg~Skn~PfCDGSH~~~~~etGdnvgPlii~~k 101 (131)
+...+++||.+ .-+|.|+|.... ..++.+.|...
T Consensus 105 ~~v~vy~~g~~--~dlC~G~Hv~~T----~~I~~fki~~~ 138 (179)
T d1nyra3 105 ENVTLYSQGDF--TDLCRGVHVPST----AKIKEFKLLST 138 (179)
T ss_dssp CCCEEEEETTE--EEECCSCCCSCG----GGCCEEEEEEE
T ss_pred CcEEEEeeCCE--EEecCCCCCccc----cccCceEEEEe
Confidence 45789999988 579999998632 34566666544
No 10
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=7.52 E-value=79 Score=17.64 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.2
Q ss_pred ecCCCCCCCCCCccc
Q psy4889 68 RCWRSKKFPLCDGAH 82 (131)
Q Consensus 68 rCg~Skn~PfCDGSH 82 (131)
||-.|-..|||=.+-
T Consensus 9 rcn~~~gppyccs~~ 23 (38)
T d1dkca_ 9 RCNASAGPPYCCSSY 23 (38)
T ss_dssp EECTTSCCCCCSSSE
T ss_pred eecccCCCCceechh
Confidence 788999999997654
Done!