RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4889
         (131 letters)



>gnl|CDD|197836 smart00704, ZnF_CDGSH, CDGSH-type zinc finger. Function unknown. 
          Length = 38

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 59 DMKDKNAYCRCWRSKKFPLCDGAHLHHN 86
          + + K A CRC RSK FP CDG+H  HN
Sbjct: 9  EKRKKYALCRCGRSKNFPYCDGSHKKHN 36


>gnl|CDD|220203 pfam09360, zf-CDGSH, Iron-binding zinc finger CDGSH type.  The
          CDGSH-type zinc finger domain binds iron rather than
          zinc as a redox-active pH-labile 2Fe-2S cluster. The
          conserved sequence
          C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining
          feature of this family. The domain is oriented towards
          the cytoplasm and is tethered to the mitochondrial
          membrane by a more N-terminal domain found in higher
          vertebrates, MitoNEET_N, pfam10660. The domain forms a
          uniquely folded homo-dimer and spans the outer
          mitochondrial membrane, orienting the iron-binding
          residues towards the cytoplasm.
          Length = 34

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 12/18 (66%), Positives = 13/18 (72%)

Query: 65 AYCRCWRSKKFPLCDGAH 82
          A CRC RSK  P CDG+H
Sbjct: 16 ALCRCGRSKNQPFCDGSH 33


>gnl|CDD|225904 COG3369, COG3369, Zinc finger domain containing protein
          (CDGSH-type) [Function unknown].
          Length = 78

 Score = 27.9 bits (62), Expect = 0.67
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 41 PNQKKNQSRAVVD----YAIIDDMKDKNAYCRCWRSKKFPLCDGAH 82
          P   + + R V         + D  ++ A CRC  S+  P CDG H
Sbjct: 4  PYLVRGRLRIVTHTAGHPEEVKDGDEQAALCRCGHSENKPFCDGTH 49


>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 933

 Score = 28.7 bits (65), Expect = 0.86
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 11/33 (33%)

Query: 55  AIIDDMKDKNA----------YCRCWRSKKFPL 77
            II+D+K+K            Y  CWR+K  PL
Sbjct: 379 KIIEDLKEKGNLLKSEKIEHSYPHCWRTKT-PL 410


>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
          Length = 912

 Score = 27.4 bits (62), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 10/30 (33%)

Query: 55  AIIDDMKDKNA----------YCRCWRSKK 74
            II+ +++K A          Y  CWR+KK
Sbjct: 374 KIIEKLEEKGALLKEEKITHSYPHCWRTKK 403


>gnl|CDD|237328 PRK13274, mdoG, glucan biosynthesis protein G; Provisional.
          Length = 516

 Score = 26.0 bits (58), Expect = 6.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 104 TGTPGQVPLSGLPDEHRRYQVDLTGGP 130
           TG   Q  L   PD  R + VD TG  
Sbjct: 416 TGDVKQSNLIRQPDGTRAFVVDFTGPA 442


>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
           subclass of Ubiquitin-protein ligase (E3). It binds
           specific ubiquitin-conjugating enzymes (E2), accepts
           ubiquitin from E2, transfers ubiquitin to substrate
           lysine side chains, and transfers additional ubiquitin
           molecules to the end of growing ubiquitin chains.
          Length = 352

 Score = 26.0 bits (58), Expect = 6.9
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 103 VTGTPGQVPLSGLPDEHRRYQVDLTGGPD 131
           VTG+  ++P+ G  D + ++ +   G PD
Sbjct: 286 VTGSS-RLPVGGFADLNPKFTIRRVGSPD 313


>gnl|CDD|220508 pfam09992, DUF2233, Predicted periplasmic protein (DUF2233).  This
           domain, found in various hypothetical bacterial
           proteins, has no known function.
          Length = 166

 Score = 25.3 bits (56), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 94  GPLLIKDGKVTGTPG 108
           GPLL+++GKV     
Sbjct: 68  GPLLVRNGKVVPDGS 82


>gnl|CDD|222950 PHA02952, PHA02952, EEV maturation protein; Provisional.
          Length = 648

 Score = 25.8 bits (57), Expect = 8.4
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 21/81 (25%)

Query: 9   AKEIEEVSFTSNKPTNLGT--------WFICK-THCKKLVNPNQKKNQSRAVVDYAIIDD 59
           A+E+++++    K    G         W         + VN    + + +    Y +IDD
Sbjct: 109 AEELDDLAAALEKLGPEGNVSISEINYWLSDNGLADYRFVNYKDVRKRYKKRNKYTLIDD 168

Query: 60  M------------KDKNAYCR 68
           M            KD  AY R
Sbjct: 169 MIIGYIGHHYIWVKDVEAYTR 189


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,639,443
Number of extensions: 548391
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 13
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)