RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4889
(131 letters)
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1;
mitochondrial outer membrane, 2Fe-2S proteins, isotopic
LABE highyield expression; 1.40A {Homo sapiens} PDB:
2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Length = 80
Score = 79.0 bits (194), Expect = 1e-20
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 26 GTWFICKTHCKK-LVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLH 84
G F K H K ++N + +K+ + +V ++D+ DK YCRCWRSKKFP CDGAH
Sbjct: 3 GMRFYVKDHRNKAMINLHIQKDNPK-IVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTK 61
Query: 85 HNNRTGDNVGPLLIK 99
HN TGDNVGPL+IK
Sbjct: 62 HNEETGDNVGPLIIK 76
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 76.3 bits (187), Expect = 1e-19
Identities = 35/72 (48%), Positives = 43/72 (59%)
Query: 32 KTHCKKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGD 91
K L+N +K + V + I D K AYCRCWRSK FP CDG+H HN TGD
Sbjct: 12 KQQKDSLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGD 71
Query: 92 NVGPLLIKDGKV 103
NVGPL++K +V
Sbjct: 72 NVGPLILKKKEV 83
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein;
1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Length = 83
Score = 72.5 bits (177), Expect = 3e-18
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 32 KTHCKKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRTGD 91
+ +NP +KN+ + V + + K+ YCRCWRS FPLCDG+ + HN GD
Sbjct: 14 RAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGD 73
Query: 92 NVGPLLIK 99
NVGPLL+K
Sbjct: 74 NVGPLLLK 81
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal
binding protein; HET: 2PE TLA; 1.80A {Ralstonia
solanacearum}
Length = 69
Score = 38.3 bits (89), Expect = 4e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 57 IDDMKDKNAYCRCWRSKKFPLCDGAH 82
+ + + CRC S P CDG+H
Sbjct: 34 LPVEQGQAWLCRCGHSLNKPFCDGSH 59
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal
binding protein; 1.50A {Pyrobaculum calidifontis}
Length = 60
Score = 35.3 bits (81), Expect = 4e-04
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 56 IIDDMKDKNAYCRCWRSKKFPLCDGAH 82
+ CRC S P CDG H
Sbjct: 14 EVKIGGRAIYLCRCGHSGSKPHCDGTH 40
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2,
metal binding protein; 1.15A {Magnetospirillum
magneticum}
Length = 87
Score = 32.0 bits (72), Expect = 0.012
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 59 DMKDKNAYCRCWRSKKFPLCDGAH 82
D +C C SK PLCDG H
Sbjct: 61 DKAGTAYFCGCKASKAPPLCDGTH 84
Score = 28.1 bits (62), Expect = 0.34
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 AYCRCWRSKKFPLCDGAHLHHN 86
+C C RSK P CDG+H
Sbjct: 31 HWCACGRSKAQPFCDGSHKGTG 52
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 27.1 bits (61), Expect = 2.2
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 52 VDYAIIDDMKDKNA----------YCRCWRSKKFPL 77
+ AI+ D++ + Y CWR PL
Sbjct: 362 ANRAILRDLRGRGLLFKEESYLHSYPHCWRCST-PL 396
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 27.0 bits (60), Expect = 2.3
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 18/51 (35%)
Query: 95 PLL---IKDGKVTGTPGQVP---------LSGLPDEHRR------YQVDLT 127
P+L +GK + L L +E++R Y VDL+
Sbjct: 415 PVLQDIFVEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLS 465
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.8
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 19/66 (28%)
Query: 2 NFKEKNLAKEIEEV--SFTSNKPTNLGTWFICKTHCKKLVNPNQKKNQSRA--VVDYAII 57
K + + KEI E S+T L L + + A +++ A
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGL------------L---SATQFTQPALTLMEKAAF 1744
Query: 58 DDMKDK 63
+D+K K
Sbjct: 1745 EDLKSK 1750
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 25.7 bits (56), Expect = 6.6
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 94 GPLLIKDGKVTGTPGQV 110
G + G PGQV
Sbjct: 459 GAEVFPQPPADGRPGQV 475
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 10/30 (33%)
Query: 55 AIIDDMKDKNA----------YCRCWRSKK 74
A+ D + +K A Y WR+KK
Sbjct: 373 AVTDLLTEKGALLKLDFITHSYPHDWRTKK 402
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.432
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,115,888
Number of extensions: 111052
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 13
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)