RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4889
         (131 letters)



>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 227

 Score = 26.2 bits (56), Expect = 1.1
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 30  ICKTHCKKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRCWRSKKFPLCDGAHLHHNNRT 89
           +C       + P  K + +   V+  + +D K ++     +            +   +  
Sbjct: 122 VCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFR 181

Query: 90  GDNVGPLLIKD 100
           GD+ GPL+ K 
Sbjct: 182 GDSGGPLVCKK 192


>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus
           pyogenes [TaxId: 1314]}
          Length = 329

 Score = 26.2 bits (57), Expect = 1.3
 Identities = 7/53 (13%), Positives = 13/53 (24%)

Query: 17  FTSNKPTNLGTWFICKTHCKKLVNPNQKKNQSRAVVDYAIIDDMKDKNAYCRC 69
           F  N+      +              +    +    + A I D+  K A    
Sbjct: 155 FLMNRENTSERYVFADCAINIDPTAQELAEIAVNTAETAKIFDIDPKIAMLSF 207


>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG,
           OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 25.2 bits (55), Expect = 1.9
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 6/36 (16%)

Query: 101 GKVTGT---PGQVPLSGL---PDEHRRYQVDLTGGP 130
             V  T    G V  S L   PD    + VD TG  
Sbjct: 4   AWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAE 39


>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal
          catalytic domain {Streptomyces albus G [TaxId: 1962]}
          Length = 130

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 20 NKPTNLGTWFICKTHCKKLVNPNQKKNQSRAVVDYAI 56
          +KP  +   F   T    +   +  ++      D   
Sbjct: 45 DKPITVNGGFRSVTCNSNVGGASNSRHMYGHAADLGA 81


>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 24.2 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 6/22 (27%)

Query: 112 LSGLPDEHRR------YQVDLT 127
           L  L +E++R      Y VDL+
Sbjct: 304 LDSLHEEYKRDLNPQKYPVDLS 325


>d2omza1 b.1.18.15 (A:417-495) Internalin A {Listeria
          monocytogenes [TaxId: 1639]}
          Length = 79

 Score = 22.8 bits (49), Expect = 8.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 7  NLAKEIEEVSFTSNKPTNLGT 27
          NL     EVS+T ++P  +G 
Sbjct: 45 NLPSYTNEVSYTFSQPVTIGK 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 530,177
Number of extensions: 22898
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 11
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)