Query psy489
Match_columns 99
No_of_seqs 106 out of 251
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 20:23:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666|consensus 99.9 3.6E-24 7.8E-29 164.1 9.5 93 6-98 77-175 (220)
2 PF12352 V-SNARE_C: Snare regi 99.2 1E-10 2.2E-15 73.1 6.2 48 51-98 1-48 (66)
3 KOG3065|consensus 96.2 0.025 5.3E-07 45.1 7.4 56 42-97 62-118 (273)
4 smart00397 t_SNARE Helical reg 95.3 0.14 3.1E-06 30.2 6.6 49 50-98 4-52 (66)
5 PF03908 Sec20: Sec20; InterP 89.8 1.7 3.8E-05 28.5 6.1 43 55-97 5-47 (92)
6 KOG3251|consensus 85.7 2.2 4.7E-05 33.3 5.2 40 58-97 129-168 (213)
7 KOG3208|consensus 76.6 4.2 9.2E-05 32.1 4.0 80 12-98 100-189 (231)
8 cd00193 t_SNARE Soluble NSF (N 61.5 28 0.00061 19.8 5.4 40 58-97 6-45 (60)
9 PF05739 SNARE: SNARE domain; 37.3 87 0.0019 18.3 5.6 40 59-98 5-44 (63)
10 KOG0812|consensus 37.1 2.4E+02 0.0052 23.3 8.4 60 39-98 207-267 (311)
11 TIGR02284 conserved hypothetic 31.5 91 0.002 21.9 3.9 46 51-96 91-136 (139)
12 KOG1666|consensus 26.8 87 0.0019 24.7 3.3 28 41-68 160-187 (220)
13 PF11373 DUF3175: Protein of u 20.4 69 0.0015 21.8 1.5 18 82-99 67-84 (86)
No 1
>KOG1666|consensus
Probab=99.91 E-value=3.6e-24 Score=164.07 Aligned_cols=93 Identities=37% Similarity=0.526 Sum_probs=83.3
Q ss_pred chhhhhhhhhHHhhhhch---hhhHHhhhcC---CCCCcCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy489 6 PKKDQNKINVVTCKTESG---VEYHVEYFSE---NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLK 79 (99)
Q Consensus 6 ~k~~~~~l~~~~~~l~~~---~~~R~eL~~~---~~~~~s~~qR~~LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~ 79 (99)
-|+++++|....+++.+. ..+|+++++. ++...+.+||++||+||++|+||+++|++|+|||.|||+||++|++
T Consensus 77 yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~ 156 (220)
T KOG1666|consen 77 YKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILE 156 (220)
T ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999998853 4459999863 2346789999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhhhhc
Q psy489 80 DLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 80 dL~~QRE~i~rtr~rl~~t 98 (99)
||+.|||+|+||+.+|++|
T Consensus 157 dL~~QRe~L~rar~rL~~t 175 (220)
T KOG1666|consen 157 DLHGQREQLERARERLRET 175 (220)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999986
No 2
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.16 E-value=1e-10 Score=73.07 Aligned_cols=48 Identities=40% Similarity=0.545 Sum_probs=45.5
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489 51 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 51 erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t 98 (99)
|.|.+++++|.+|.+++.||+++|.+|+.+|..|||+|.+++.+|.+.
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i 48 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDI 48 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999763
No 3
>KOG3065|consensus
Probab=96.21 E-value=0.025 Score=45.14 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 42 QSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 42 qR~~LL~~t-erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
..+.|.... ..-..|..+-.++..+|.|++.+|..++..|..|+|+|.++...+..
T Consensus 62 ~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~ 118 (273)
T KOG3065|consen 62 EVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDD 118 (273)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhh
Confidence 444554444 55677888888999999999999999999999999999999988764
No 4
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=95.33 E-value=0.14 Score=30.20 Aligned_cols=49 Identities=24% Similarity=0.214 Sum_probs=43.3
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489 50 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 50 terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t 98 (99)
...++...+.|......+.|...+|..|...+..|.+.|.+....+..+
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~ 52 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDA 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3567788888999999999999999999999999999999988877653
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=89.77 E-value=1.7 Score=28.54 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.7
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 55 RTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 55 rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
..++.|.++++++.++-+-|...++.|.++-++|..+.+.+.+
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~ 47 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDG 47 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999887653
No 6
>KOG3251|consensus
Probab=85.71 E-value=2.2 Score=33.27 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 58 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 58 ~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
+.|..|++.+.+.=.-|.+|+++|..||-.|.+|+.++++
T Consensus 129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~ 168 (213)
T KOG3251|consen 129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILD 168 (213)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666677999999999999999999999875
No 7
>KOG3208|consensus
Probab=76.59 E-value=4.2 Score=32.08 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred hhhhHHhhhhchhhh---HHhhhcC--CC-----CCcCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy489 12 KINVVTCKTESGVEY---HVEYFSE--NS-----TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL 81 (99)
Q Consensus 12 ~l~~~~~~l~~~~~~---R~eL~~~--~~-----~~~s~~qR~~LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~dL 81 (99)
-.--.|.++++...+ |+.|++. .+ .......++.++.-+. +|..+-++..|.=.++.++-++|
T Consensus 100 dy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~~lkE~~-------~in~s~~~vde~Is~A~aTre~l 172 (231)
T KOG3208|consen 100 DYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEMYLKEHD-------HINNSIRLVDELISQAQATRENL 172 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHHHHHHhc-------cccchHHHHHHHHHHHHHHHHHH
Confidence 333445556665543 6666642 11 1111122344444444 45555566666666777778899
Q ss_pred HHhhHHHHHhhhhhhhc
Q psy489 82 ESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 82 ~~QRE~i~rtr~rl~~t 98 (99)
+.||-.+-...++|.++
T Consensus 173 ~~Qrs~l~~i~~k~~~~ 189 (231)
T KOG3208|consen 173 HSQRSVLGGINNKVNNI 189 (231)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 99999999999998753
No 8
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=61.53 E-value=28 Score=19.76 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 58 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 58 ~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
+.|..-...+.+.-.++..|...+..|.+.|.+....+..
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~ 45 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDN 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666788888999999999999999887777654
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.28 E-value=87 Score=18.30 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489 59 HLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 59 rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t 98 (99)
.|..-...+.+.-+++..|-..+..|-+.|.+....+..|
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 44 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRA 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHH
Confidence 3444555566777888889999999999988877776543
No 10
>KOG0812|consensus
Probab=37.08 E-value=2.4e+02 Score=23.31 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=42.8
Q ss_pred CHHHHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489 39 NEEQSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 39 s~~qR~~LL~~t-erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t 98 (99)
+.+|...||+.+ +.+..=...+..-.-..-|--+|=.++..=...|.|+|.|..+.+.++
T Consensus 207 ~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds 267 (311)
T KOG0812|consen 207 PQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDS 267 (311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 334556666666 555544555555556667777777888888899999999999988764
No 11
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=31.51 E-value=91 Score=21.89 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=39.8
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q psy489 51 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLH 96 (99)
Q Consensus 51 erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~ 96 (99)
+.+++.=+.+...+.-|++..+++..+-.-|.+|...|.+.++.+.
T Consensus 91 ~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~ 136 (139)
T TIGR02284 91 EEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIR 136 (139)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666788888999998888999999999999999999999875
No 12
>KOG1666|consensus
Probab=26.76 E-value=87 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.2
Q ss_pred HHHHHHHhhhHHHHHhhHhHHHHHHHHH
Q psy489 41 EQSQRLLDTSEEIERTGKHLETGYRIAI 68 (99)
Q Consensus 41 ~qR~~LL~~terL~rts~rL~~s~ria~ 68 (99)
.||++|..+.++|-.+++.|..|.+|+.
T Consensus 160 ~QRe~L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 160 GQREQLERARERLRETDANLGKSRKILT 187 (220)
T ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 4899999989999999999999988764
No 13
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.40 E-value=69 Score=21.79 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=13.7
Q ss_pred HHhhHHHHHhhhhhhhcC
Q psy489 82 ESQRETLQRTRTRLHYQF 99 (99)
Q Consensus 82 ~~QRE~i~rtr~rl~~t~ 99 (99)
..||..|++|.+.|+..|
T Consensus 67 ~~rr~~LE~AK~eLR~~f 84 (86)
T PF11373_consen 67 KERRAVLERAKDELRKAF 84 (86)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 357788888888887765
Done!