Query psy489
Match_columns 99
No_of_seqs 106 out of 251
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:24:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.8 2.3E-20 7.8E-25 122.6 5.7 58 41-98 2-59 (81)
2 1gl2_C VTI1B, vesicle transpor 99.6 2.4E-16 8.2E-21 99.6 4.8 48 51-98 2-49 (65)
3 1n7s_C SNAP-25A; neuronal snar 99.3 1.6E-11 5.6E-16 80.1 7.8 52 46-97 11-62 (79)
4 1nhl_A Synaptosomal-associated 98.8 8.6E-09 3E-13 62.7 5.3 37 61-97 3-39 (54)
5 3b5n_C Protein transport prote 98.1 8.4E-06 2.9E-10 52.1 6.3 46 52-97 6-51 (70)
6 1l4a_C S-SNAP25 fusion protein 98.0 2.3E-05 7.8E-10 51.5 6.8 48 50-97 19-66 (83)
7 1gl2_C VTI1B, vesicle transpor 49.7 28 0.00094 20.8 4.2 28 41-68 34-61 (65)
8 2nps_C Vesicle transport throu 43.8 36 0.0012 21.2 4.2 28 41-68 44-71 (81)
9 1u6h_B Talin; protein-protein 34.4 20 0.0007 19.1 1.6 26 40-65 2-27 (31)
10 1u89_A Talin 1, talin; 4-helix 20.5 1.3E+02 0.0043 21.0 4.0 32 36-67 96-127 (139)
11 2z5i_A TM, general control pro 20.0 1.4E+02 0.0047 17.2 4.2 20 80-99 27-46 (52)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.81 E-value=2.3e-20 Score=122.60 Aligned_cols=58 Identities=43% Similarity=0.749 Sum_probs=56.0
Q ss_pred HHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489 41 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 41 ~qR~~LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t 98 (99)
+||++||+++++|++|+++|.+|+++|+|||+||.+|+.+|+.|||+|++++++|+++
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~ 59 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRET 59 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 4899999999999999999999999999999999999999999999999999999864
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.63 E-value=2.4e-16 Score=99.56 Aligned_cols=48 Identities=35% Similarity=0.626 Sum_probs=44.6
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhc
Q psy489 51 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHYQ 98 (99)
Q Consensus 51 erL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~t 98 (99)
++|++|+++|.+|+++|.|||+||.+|+.+|+.|||+|.+++++|+++
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~ 49 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNT 49 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhH
Confidence 689999999999999999999999999999999999999999999864
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.27 E-value=1.6e-11 Score=80.07 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=48.6
Q ss_pred HHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 46 LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 46 LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
...+++++++|++++.++.++|.|||+||..|+.+|+.|||+|.|++..|++
T Consensus 11 ~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~ 62 (79)
T 1n7s_C 11 QRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNH 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 3456699999999999999999999999999999999999999999999876
No 4
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.79 E-value=8.6e-09 Score=62.66 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 61 ETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 61 ~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
.++.++|.|||+||..++.+|+.|||+|.|++..|++
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~ 39 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQ 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHH
Confidence 5789999999999999999999999999999999875
No 5
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.10 E-value=8.4e-06 Score=52.07 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=41.9
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 52 EIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 52 rL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
.-+.|.++..++.++|.|+|++|..++..|+.|.|+|.++...|+.
T Consensus 6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~ 51 (70)
T 3b5n_C 6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDL 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4467788889999999999999999999999999999999988864
No 6
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.99 E-value=2.3e-05 Score=51.54 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=44.2
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q psy489 50 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRLHY 97 (99)
Q Consensus 50 terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~QRE~i~rtr~rl~~ 97 (99)
...-+.|.++..++.++|.|++++|..++..|+.|+|+|.|+...|..
T Consensus 19 ~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~ 66 (83)
T 1l4a_C 19 NQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQ 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999999999988764
No 7
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=49.70 E-value=28 Score=20.82 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.1
Q ss_pred HHHHHHHhhhHHHHHhhHhHHHHHHHHH
Q psy489 41 EQSQRLLDTSEEIERTGKHLETGYRIAI 68 (99)
Q Consensus 41 ~qR~~LL~~terL~rts~rL~~s~ria~ 68 (99)
.||++|....+++..+...|..|.+++.
T Consensus 34 ~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 34 EQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 5899999999999999999999988753
No 8
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=43.84 E-value=36 Score=21.21 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.0
Q ss_pred HHHHHHHhhhHHHHHhhHhHHHHHHHHH
Q psy489 41 EQSQRLLDTSEEIERTGKHLETGYRIAI 68 (99)
Q Consensus 41 ~qR~~LL~~terL~rts~rL~~s~ria~ 68 (99)
.||++|....+++..+..-|..|.+++.
T Consensus 44 ~QRE~l~~~~~~l~~~d~~l~~s~k~l~ 71 (81)
T 2nps_C 44 HDRERIQRARERLRETDANLGKSSRILT 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 5899999999999999999999888754
No 9
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=34.41 E-value=20 Score=19.07 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhHHHHHhhHhHHHHHH
Q psy489 40 EEQSQRLLDTSEEIERTGKHLETGYR 65 (99)
Q Consensus 40 ~~qR~~LL~~terL~rts~rL~~s~r 65 (99)
++.|++||+....+-.++.++-++-+
T Consensus 2 ~~~q~rLl~aak~vaeata~mVeaak 27 (31)
T 1u6h_B 2 LENSRKLLSAAKILADATAKMVEAAK 27 (31)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899998888888888776644
No 10
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=20.55 E-value=1.3e+02 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCcCHHHHHHHHhhhHHHHHhhHhHHHHHHHH
Q psy489 36 TNINEEQSQRLLDTSEEIERTGKHLETGYRIA 67 (99)
Q Consensus 36 ~~~s~~qR~~LL~~terL~rts~rL~~s~ria 67 (99)
...+.+.|++||+....|-.++.++-++-+-+
T Consensus 96 ~~~D~~~q~rLL~AAk~lAdATa~mVeAAk~~ 127 (139)
T 1u89_A 96 GESDLENSRKLLSAAKILADATAKMVEAAKGA 127 (139)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998888877643
No 11
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.03 E-value=1.4e+02 Score=17.18 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHhhHHHHHhhhhhhhcC
Q psy489 80 DLESQRETLQRTRTRLHYQF 99 (99)
Q Consensus 80 dL~~QRE~i~rtr~rl~~t~ 99 (99)
+|..+.+........|+.||
T Consensus 27 eL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 27 ELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 44555555555555555554
Done!