Query psy489
Match_columns 99
No_of_seqs 106 out of 251
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 20:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy489.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/489hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvpb_ a.32.1.1 (B:) Large ch 20.6 32 0.0023 18.3 2.2 26 61-86 14-39 (43)
2 d1nh2b_ a.32.1.1 (B:) Large ch 12.1 40 0.0029 18.0 1.2 27 61-87 16-42 (46)
3 d2bz1a1 c.144.1.1 (A:1-174) GT 9.9 46 0.0033 21.5 1.0 13 71-83 130-142 (174)
4 d2f66c1 a.2.17.3 (C:142-206) V 8.2 1.6E+02 0.011 16.6 2.9 48 42-89 9-62 (65)
5 d1xl3c1 a.243.1.1 (C:2-92) Tye 6.9 2.1E+02 0.015 17.0 3.2 20 37-56 59-79 (91)
6 d1orja_ a.24.19.1 (A:) Flagell 4.0 4.1E+02 0.03 15.5 3.9 37 43-83 89-125 (126)
7 d1w0da_ c.77.1.1 (A:) 3-isopro 4.0 3E+02 0.022 19.0 3.0 28 54-81 302-337 (337)
8 d1dova_ a.24.9.1 (A:) alpha-ca 3.9 5E+02 0.037 16.4 4.3 37 37-73 117-153 (181)
9 d1t01a2 a.24.9.1 (A:126-252) V 3.8 4.6E+02 0.034 15.8 4.9 36 37-72 57-92 (127)
10 d1bl0a2 a.4.1.8 (A:63-124) Mar 3.6 1.4E+02 0.01 15.6 0.5 25 58-82 1-25 (62)
No 1
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=32 Score=18.27 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy489 61 ETGYRIAIETEKIATDVLKDLESQRE 86 (99)
Q Consensus 61 ~~s~ria~ETE~iG~~Il~dL~~QRE 86 (99)
-++-|-..+.++|+.++|.+|.+--|
T Consensus 14 I~~vR~~F~~~GvDe~vL~eLk~~We 39 (43)
T d1nvpb_ 14 INDVRDIFLDDGVDEQVLMELKTLWE 39 (43)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35667788888999999999987554
No 2
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.12 E-value=40 Score=18.03 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy489 61 ETGYRIAIETEKIATDVLKDLESQRET 87 (99)
Q Consensus 61 ~~s~ria~ETE~iG~~Il~dL~~QRE~ 87 (99)
-++-|-..+.++|+.++|.+|..--|+
T Consensus 16 I~~vR~dF~~~Gvde~vL~eLk~~We~ 42 (46)
T d1nh2b_ 16 VNEVREDFENAGIDEQTLQDLKNIWQK 42 (46)
T ss_dssp HHHTHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 345667778889999999999876553
No 3
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=9.85 E-value=46 Score=21.52 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q psy489 71 EKIATDVLKDLES 83 (99)
Q Consensus 71 E~iG~~Il~dL~~ 83 (99)
=.||++||.+|+-
T Consensus 130 yGiGAQIL~dLGv 142 (174)
T d2bz1a1 130 FTLCADMFKLLGV 142 (174)
T ss_dssp THHHHHHHHHTTC
T ss_pred hhHHHHHHHHcCC
Confidence 4689999999863
No 4
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.19 E-value=1.6e+02 Score=16.64 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHH------HHHHHHhhHHHH
Q psy489 42 QSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDV------LKDLESQRETLQ 89 (99)
Q Consensus 42 qR~~LL~~terL~rts~rL~~s~ria~ETE~iG~~I------l~dL~~QRE~i~ 89 (99)
-+.+|-+++-.|+..+..|+...+...+..++-.=| =.+-+-+||.|.
T Consensus 9 Lk~kL~~~~~~ld~~s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeYH~rREKLa 62 (65)
T d2f66c1 9 LKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLA 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666777777776666665554444444444333 335566777663
No 5
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=6.94 E-value=2.1e+02 Score=17.03 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=15.3
Q ss_pred CcCHHHHHHHHhhh-HHHHHh
Q psy489 37 NINEEQSQRLLDTS-EEIERT 56 (99)
Q Consensus 37 ~~s~~qR~~LL~~t-erL~rt 56 (99)
-.+.++|+.||... +.|+.+
T Consensus 59 f~d~e~R~~lL~a~Q~ALD~a 79 (91)
T d1xl3c1 59 FSDEEQRQNLLQMCQNAIDMA 79 (91)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999887 666554
No 6
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=4.01 E-value=4.1e+02 Score=15.45 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy489 43 SQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLES 83 (99)
Q Consensus 43 R~~LL~~terL~rts~rL~~s~ria~ETE~iG~~Il~dL~~ 83 (99)
..+|+.. +.+.+.++++..++.+--+-+.+|..+++.
T Consensus 89 ~~~L~~a----~~~~~~i~e~~~il~~l~eaW~~i~~~~~~ 125 (126)
T d1orja_ 89 LNTLVKV----DKTKEELQKILEILKDLREAWEEVKKKVHH 125 (126)
T ss_dssp HHHHHCT----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455543 356678999999999998999998888764
No 7
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.99 E-value=3e+02 Score=19.05 Aligned_cols=28 Identities=7% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHhhHhHHHHHHHHHH--------HHHHHHHHHHHH
Q psy489 54 ERTGKHLETGYRIAIE--------TEKIATDVLKDL 81 (99)
Q Consensus 54 ~rts~rL~~s~ria~E--------TE~iG~~Il~dL 81 (99)
....++|++|-.-... |.++|..|+..|
T Consensus 302 ~~~a~~i~~Av~~~l~~~~~~~~~T~d~g~avi~~l 337 (337)
T d1w0da_ 302 HDAAARVDRAVEAHLATRGSERLATSDVGERIAAAL 337 (337)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHhcC
Confidence 3455667776665554 888888887654
No 8
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.91 E-value=5e+02 Score=16.37 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=31.6
Q ss_pred CcCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHH
Q psy489 37 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKI 73 (99)
Q Consensus 37 ~~s~~qR~~LL~~terL~rts~rL~~s~ria~ETE~i 73 (99)
-.++.+|++|......|.+.+--|--|.++-...-+.
T Consensus 117 L~d~~~R~~l~~ar~~Lk~~~p~L~ts~k~~lrhp~~ 153 (181)
T d1dova_ 117 LKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDV 153 (181)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCc
Confidence 4578899999999999999999999999887765443
No 9
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.81 E-value=4.6e+02 Score=15.78 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=31.5
Q ss_pred CcCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHH
Q psy489 37 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEK 72 (99)
Q Consensus 37 ~~s~~qR~~LL~~terL~rts~rL~~s~ria~ETE~ 72 (99)
=.++.+|++|..+...|..++--|--|..+-..+-+
T Consensus 57 L~~~~~Rd~L~~ar~~Lk~~sp~L~ts~K~~v~~~~ 92 (127)
T d1t01a2 57 LTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKN 92 (127)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 457789999999999999999999999999887644
No 10
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=1.4e+02 Score=15.60 Aligned_cols=25 Identities=4% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy489 58 KHLETGYRIAIETEKIATDVLKDLE 82 (99)
Q Consensus 58 ~rL~~s~ria~ETE~iG~~Il~dL~ 82 (99)
.+|+.+.+++.+|..-=.+|+..++
T Consensus 1 rRl~~a~~lL~~t~~~i~~IA~~~G 25 (62)
T d1bl0a2 1 RKMTEIAQKLKESNEPILYLAERYG 25 (62)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHccCCCHHHHHHHHC
Done!