RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy489
         (99 letters)



>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
          transformylase PurT, N-domain {Escherichia coli [TaxId:
          562]}
          Length = 111

 Score = 27.2 bits (60), Expect = 0.23
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 23 GVEYHV--EYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKD 80
          GVE      Y    + ++        +   + + R  +  E  + I  E E IATD+L  
Sbjct: 34 GVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVEL-EKPHYIVPEIEAIATDMLIQ 92

Query: 81 LESQ 84
          LE +
Sbjct: 93 LEEE 96


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 26.6 bits (59), Expect = 0.47
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 29 EYFSENSTNINEEQSQRLLDTSEEIERTG 57
          +Y+S      ++    RL + ++EIE T 
Sbjct: 66 QYYSSIKRFGSKAHMDRLEEVNKEIESTS 94


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 26.3 bits (58), Expect = 0.69
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 29 EYFSENSTNINEEQSQRLLDTSEEIERTG 57
          +Y+S    + ++   +RL +   E+  TG
Sbjct: 69 QYYSSIKRSGSQAHEERLQEVEAEVASTG 97


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
          domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 26.2 bits (58), Expect = 0.78
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 29 EYFSENSTNINEEQSQRLLDTSEEIERTG 57
          +Y+        EE   RL   ++EIE TG
Sbjct: 67 QYYGSFKEAKIEEHLARLEAVTKEIETTG 95


>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
           coli [TaxId: 562]}
          Length = 127

 Score = 24.7 bits (53), Expect = 1.7
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 44  QRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRL 95
           +++    EE            R + + ++   + + ++E   E LQ  R +L
Sbjct: 54  RQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQL 105


>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Bacillus subtilis [TaxId: 1423]}
          Length = 363

 Score = 24.7 bits (54), Expect = 2.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 29 EYFSENSTNINEEQSQRLLDTSEEIERTGKHLET 62
          E + E      EE   RL     EI+RTG ++ T
Sbjct: 17 ECYQE--LGKEEEVKDRLDSIKSEIDRTGSYVHT 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,606
Number of extensions: 12653
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 13
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)