BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4890
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIND-RENYVTN 263
GAL+ S+ ++ N ++ I+RA GL P D +G DPY+ L G+ + N R + N
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLE 309
NP + + G D + L + + D D +++IG T L+
Sbjct: 74 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 122
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIND-RENYVTN 263
GAL+ S+ ++ N ++ I+RA GL P D +G DPY+ L G+ + N R + N
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLE 309
NP + + G D + L + + D D +++IG T L+
Sbjct: 76 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 124
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYI------------VLKTGSVEI 254
G +Q I+ + N+ I +I++A L P+D +G DP++ V++ S E
Sbjct: 7 GEIQLQINYDLGNLII--HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 255 NDRENYVTNQINPYFGR---HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
R YV +NP + + + I L V + D+D S +D++G +DL S
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS- 123
Query: 312 FYSRHRGSCARW 323
+ H + RW
Sbjct: 124 --TSHLDNTPRW 133
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
L+ + +EK++VT+R A L P D +G DPY+ LK E + + + +
Sbjct: 9 LKAEVTDEKLHVTVR----DAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 64
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
NP + F + D +L+VEI D D +++D++G
Sbjct: 65 NPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMG 102
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
L+ + +EK++VT+R A L P D +G DPY+ LK E + + + +
Sbjct: 10 LKAEVTDEKLHVTVR----DAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 65
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
NP + F + D +L+VEI D D +++D++G
Sbjct: 66 NPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMG 103
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
+Q ID E + V +R A L P D +G DPY+ LK E + + +
Sbjct: 24 IQAHIDREVLIVVVR----DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSL 79
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
NP + F Q D +L+VEI D D S++D++G
Sbjct: 80 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
+Q ID E + V +R A L P D +G DPY+ LK E + + + +
Sbjct: 165 IQAHIDREVLIVVVR----DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSL 220
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
NP + F Q D +L+VEI D D S++D++G
Sbjct: 221 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 258
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
L+ + +EK++VT+R A L P D +G DPY+ LK E + + + +
Sbjct: 11 LKAEVADEKLHVTVR----DAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 66
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
NP + F + D +L+VEI D D +++D+ G
Sbjct: 67 NPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFXG 104
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 208 ALQESI--DNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI 265
A+++S+ K + I + +V A GL KDK G DPY+ ++ G + R + +
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK--KRTKTIYGNL 60
Query: 266 NPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK-----------DDYIGMTEMDLES 310
NP + +F + +D ++ V + D D K DD++G T +++ +
Sbjct: 61 NPVWEENFHFECHNSSD-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT 115
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 193 RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHP--KDKDGKCDPYIVLKTG 250
RD TF+ + L+ G +RV I+ L K+K+ DP ++++
Sbjct: 475 RDPNTTFNSRALTQGPWWRP-------ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIH 527
Query: 251 SV--EINDRENYV--TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEM 306
V + R+ V N NP + FE + + P A + ++D+DS SK+D+IG + +
Sbjct: 528 GVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTI 587
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 193 RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHP--KDKDGKCDPYIVLKTG 250
RD TF+ + L+ G +RV I+ L K+K+ DP ++++
Sbjct: 477 RDPNTTFNSRALTQGPWWRP-------ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIH 529
Query: 251 SV--EINDRENYV--TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEM 306
V + R+ V N NP + FE + + P A + ++D+DS SK+D+IG + +
Sbjct: 530 GVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTI 589
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 214 DNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-----INPY 268
++E + +RV +V L KD G DPY+ L + N V + +NP
Sbjct: 15 EDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPK 74
Query: 269 FGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDL 308
+ F + + P++ +L E+ D + +++DD++G ++ L
Sbjct: 75 WNEEFYFRVN-PSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 213 IDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK----TGSVEINDRENYVTNQINPY 268
+++E+ + +RV ++ GL KD G DPY+ + V + + + +NP
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 269 FGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDL 308
+ + P +L E+ D + +++DD++G ++ L
Sbjct: 73 WNEEILFR-VHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
+ V I+ A L D G DPY+ +++ G + N +NPY+ F +
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 279 FPTDAKL--TVEIKDHDSVSKDDYIG 302
F K+ V + D+D + K+D IG
Sbjct: 80 FEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
+ V I+ A L D G DPY+ +++ G + N +NPY+ F +
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 279 FPTDAKL--TVEIKDHDSVSKDDYIG 302
F K+ V + D+D + K+D IG
Sbjct: 79 FEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
+ V I+ A L D G DPY+ +++ G + N +NPY+ F +
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 279 FPTDAKL--TVEIKDHDSVSKDDYIG 302
F K+ V + D+D + K+D IG
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIG 237
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-I 265
G LQ S+D + N + V I++A L D G DPY+ + + E V + +
Sbjct: 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 65
Query: 266 NPYFGRHFEIQGSFPTDA--KLTVEIKDHDSVSKDDYIG 302
NP F F + + A L + + D D SK D IG
Sbjct: 66 NPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIG 104
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEIN---DRENYVTNQINPYFGRHFEIQGS 278
I V + A L P D +G DPY+ LK N + V +NP + F +
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF-VFNL 80
Query: 279 FPTDA--KLTVEIKDHDSVSKDDYIG 302
P D +L+VE+ D D S++D++G
Sbjct: 81 KPGDVERRLSVEVWDWDRTSRNDFMG 106
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
+ V I+ A L D G DPY+ +++ G + N +NPY+ F +
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 279 FPTDAKL--TVEIKDHDSVSKDDYIG 302
F K+ V + D+D + K+D IG
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-I 265
G LQ S+D + N + V I++A L D G DPY+ + + E V + +
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 63
Query: 266 NPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVSKDDYIG 302
NP F F + + L + + D D SK D IG
Sbjct: 64 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIG 102
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-I 265
G LQ S+D + N + V I++A L D G DPY+ + + E V + +
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80
Query: 266 NPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVSKDDYIG 302
NP F F + + L + + D D SK D IG
Sbjct: 81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIG 119
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-I 265
G LQ S+D + N + V I++A L D G DPY+ + + E V + +
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 88
Query: 266 NPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVSKDDYIG 302
NP F F + + L + + D D SK D IG
Sbjct: 89 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIG 127
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-I 265
G LQ S+D + N + V I++A L D G DPY+ + + E V + +
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80
Query: 266 NPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVSKDDYIG 302
NP F F + + L + + D D SK D IG
Sbjct: 81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIG 119
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVL----KTGSVEINDRENYVTNQINPYFGRHFEIQ 276
+RV ++ GL KD G DPY+ + + + + + +NP + +
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDL 308
P ++ E+ D + +++DD++G ++ L
Sbjct: 69 -VLPQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPY--FGRHFEIQGSF 279
+ V+++ A L +GK +PY + GS R + + +NP F F I+ +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRT--IQDTLNPKWNFNCQFFIKDLY 446
Query: 280 PTDAKLTVEIKDHDSVSKDDYIGMTEM 306
LT + D D S DD++G TE+
Sbjct: 447 QDVLCLT--LFDRDQFSPDDFLGRTEI 471
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI-----NPYFGRHFEIQGS 278
V I++A L KD +G DPY+ + + DR+ ++ NP F F+
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYL----LPDRKKKFQTKVHRKTLNPIFNETFQFSVP 80
Query: 279 FPTDA--KLTVEIKDHDSVSKDDYIGMTEMD 307
A KL + D D S+ D IG +D
Sbjct: 81 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI-----NPYFGRHFEIQGS 278
V I++A L KD +G DPY+ + + DR+ ++ NP F F+
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYL----LPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
Query: 279 FPTDA--KLTVEIKDHDSVSKDDYIGMTEMD 307
A KL + D D S+ D IG +D
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQG 277
+I V I++A L D G DPY+ ++ + +NP F F
Sbjct: 17 SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD- 75
Query: 278 SFPTD----AKLTVEIKDHDSVSKDDYIGMTEMDLES---------RFYSRHRGSCARW 323
PT+ + + + D D +S++D IG + +S +R R A+W
Sbjct: 76 -IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQW 133
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVL---KTGSVEINDRENYVTNQINPYFGRHF--EIQGS 278
V I+R L D +G DP++ L + + +NP F F +I+ S
Sbjct: 41 VGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
L + + D+D +DYIG ++ + ++
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTN----QINPYFGRHF--EIQG 277
V I+R L D +G DP++ L ++ + + T +NP F F +I+
Sbjct: 19 VGIIRCVHLAAMDANGYSDPFVKLWL-KPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77
Query: 278 SFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
S L + + D+D +DYIG ++ + ++
Sbjct: 78 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDR--ENYVTNQ 264
G+ S D + V + ++V +++A L D GK DP+ +L+ G NDR + V
Sbjct: 1 GSSGSSGDVKDVGI-LQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKN 55
Query: 265 INPYFGRHFEIQGSFPTD---AKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+NP + + F +FP L V + D D D++G + L S
Sbjct: 56 LNPEWNKVF----TFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLS 100
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTN----QINPYFGRHF--EIQG 277
V I+R L D +G DP++ L ++ + + T +NP F F +I+
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWL-KPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 99
Query: 278 SFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
S L + + D+D +DYIG ++ + ++
Sbjct: 100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQIN--PYFGRHFEIQGS 278
T+ V +V A GL D DPY+ L + D+++ V + P + F S
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQL---TCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRF 312
T +L +I D D ++DD +G + LE F
Sbjct: 68 EGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVF 100
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK-TGS--------- 251
P N A D V+V++ ++I + YG++ ++ K D YIV + TG
Sbjct: 1 APADNAA-----DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKP 55
Query: 252 --VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
VE E ++ N + + GS T K + D + ++G D++
Sbjct: 56 LIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 115
Query: 310 SRFYSRHR 317
R + R
Sbjct: 116 FRLFPFDR 123
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK-TGS--------- 251
P N A D V+V++ ++I + YG++ ++ K D YIV + TG
Sbjct: 1 APADNAA-----DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKP 55
Query: 252 --VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
VE E ++ N + + GS T K + D + ++G D++
Sbjct: 56 LIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 115
Query: 310 SRFYSRHR 317
R + R
Sbjct: 116 FRLFPFDR 123
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK-TGS--------- 251
P N A D V+V++ ++I + YG++ ++ K D YIV + TG
Sbjct: 3 APADNAA-----DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKP 57
Query: 252 --VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
VE E ++ N + + GS T K + D + ++G D++
Sbjct: 58 LIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 117
Query: 310 SRFYSRHR 317
R + R
Sbjct: 118 FRLFPFDR 125
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK-TGS--------- 251
P N A D V+V++ ++I + YG++ ++ K D YIV + TG
Sbjct: 3 APADNAA-----DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKP 57
Query: 252 --VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
VE E ++ N + + GS T K + D + ++G D++
Sbjct: 58 LIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 117
Query: 310 SRFYSRHR 317
R + R
Sbjct: 118 FRLFPFDR 125
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK-TGS--------- 251
P N A D V+V++ ++I + YG++ ++ K D YIV + TG
Sbjct: 3 APADNAA-----DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKP 57
Query: 252 --VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
VE E ++ N + + GS T K + D + ++G D++
Sbjct: 58 LIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 117
Query: 310 SRFYSRHR 317
R + R
Sbjct: 118 FRLFPFDR 125
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK-TGS--------- 251
P N A D V+V++ ++I + YG++ ++ K D YIV + TG
Sbjct: 1 APADNAA-----DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKP 55
Query: 252 --VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
VE E ++ N + + GS T K + D + ++G D++
Sbjct: 56 LIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 115
Query: 310 SRFYSRHR 317
R + R
Sbjct: 116 FRLFPFDR 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,198,668
Number of Sequences: 62578
Number of extensions: 459679
Number of successful extensions: 1031
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 48
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)