Query psy4890
Match_columns 364
No_of_seqs 314 out of 1849
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:24:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1326|consensus 100.0 1.7E-46 3.7E-51 396.3 7.1 239 74-334 486-726 (1105)
2 cd04016 C2_Tollip C2 domain pr 99.8 2.2E-19 4.7E-24 153.4 15.5 117 220-343 2-121 (121)
3 cd04037 C2E_Ferlin C2 domain f 99.8 6.5E-20 1.4E-24 156.2 12.2 107 221-328 1-107 (124)
4 cd08375 C2_Intersectin C2 doma 99.8 3.1E-19 6.7E-24 154.9 14.8 122 220-344 15-136 (136)
5 cd08682 C2_Rab11-FIP_classI C2 99.8 1.9E-19 4E-24 153.1 13.1 118 222-342 1-126 (126)
6 cd08681 C2_fungal_Inn1p-like C 99.8 8.6E-19 1.9E-23 146.7 13.3 115 221-343 2-118 (118)
7 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.4E-18 2.9E-23 148.5 13.7 122 221-343 1-132 (133)
8 cd08376 C2B_MCTP_PRT C2 domain 99.8 5E-18 1.1E-22 141.7 13.7 114 221-344 1-115 (116)
9 cd04019 C2C_MCTP_PRT_plant C2 99.8 7.3E-18 1.6E-22 148.8 14.8 124 222-347 2-135 (150)
10 cd04024 C2A_Synaptotagmin-like 99.8 1.6E-17 3.6E-22 140.3 14.3 120 221-342 2-127 (128)
11 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.2E-17 2.6E-22 142.2 13.4 119 222-344 2-126 (127)
12 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.2E-17 2.5E-22 142.0 13.3 114 222-343 2-119 (121)
13 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.6E-17 3.6E-22 141.1 13.9 118 222-343 2-121 (121)
14 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.8E-17 6.2E-22 138.8 14.7 118 222-341 2-122 (123)
15 cd04036 C2_cPLA2 C2 domain pre 99.7 1.2E-17 2.5E-22 140.6 12.2 116 222-344 2-118 (119)
16 cd04042 C2A_MCTP_PRT C2 domain 99.7 2.7E-17 5.8E-22 138.7 14.4 118 222-344 2-120 (121)
17 KOG1030|consensus 99.7 7.4E-18 1.6E-22 150.0 11.1 91 220-313 6-96 (168)
18 cd04017 C2D_Ferlin C2 domain f 99.7 6.3E-17 1.4E-21 139.5 14.0 119 221-343 2-131 (135)
19 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.5E-16 3.3E-21 135.9 15.5 120 220-345 4-124 (126)
20 cd08379 C2D_MCTP_PRT_plant C2 99.7 6.2E-17 1.3E-21 139.2 13.0 114 222-339 2-125 (126)
21 cd04043 C2_Munc13_fungal C2 do 99.7 1.2E-16 2.7E-21 135.1 14.4 121 221-346 2-123 (126)
22 cd08678 C2_C21orf25-like C2 do 99.7 9.2E-17 2E-21 136.7 13.5 121 222-346 1-122 (126)
23 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.9E-16 4.2E-21 134.1 14.7 117 222-342 2-120 (121)
24 cd08677 C2A_Synaptotagmin-13 C 99.7 4.2E-17 9E-22 138.8 10.0 95 216-313 10-108 (118)
25 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.6E-16 3.5E-21 132.8 13.3 114 221-343 2-121 (121)
26 cd04046 C2_Calpain C2 domain p 99.7 3.7E-16 7.9E-21 133.2 15.4 120 220-344 3-122 (126)
27 cd08395 C2C_Munc13 C2 domain t 99.7 9.6E-17 2.1E-21 136.9 11.5 91 222-313 2-100 (120)
28 cd04041 C2A_fungal C2 domain f 99.7 1.1E-16 2.4E-21 133.4 11.3 100 221-322 2-106 (111)
29 cd04044 C2A_Tricalbin-like C2 99.7 4.1E-16 9E-21 130.8 14.4 120 220-343 2-122 (124)
30 cd08381 C2B_PI3K_class_II C2 d 99.7 1.5E-16 3.3E-21 135.3 11.0 94 219-313 12-111 (122)
31 cd08377 C2C_MCTP_PRT C2 domain 99.7 7E-16 1.5E-20 128.9 14.8 117 221-343 2-118 (119)
32 cd08382 C2_Smurf-like C2 domai 99.7 5.5E-16 1.2E-20 131.6 13.5 116 222-341 2-122 (123)
33 cd04027 C2B_Munc13 C2 domain s 99.7 7.8E-16 1.7E-20 131.4 13.7 115 221-341 2-127 (127)
34 cd04014 C2_PKC_epsilon C2 doma 99.7 1.3E-15 2.9E-20 130.4 15.1 118 220-346 4-131 (132)
35 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.1E-16 4.5E-21 134.8 9.6 98 217-314 12-115 (125)
36 cd04028 C2B_RIM1alpha C2 domai 99.7 4.8E-16 1E-20 137.0 11.8 93 220-313 29-126 (146)
37 cd04010 C2B_RasA3 C2 domain se 99.7 7.2E-16 1.6E-20 136.0 12.6 118 222-341 2-147 (148)
38 cd04049 C2_putative_Elicitor-r 99.7 9.8E-16 2.1E-20 129.6 12.0 109 221-331 2-115 (124)
39 cd04031 C2A_RIM1alpha C2 domai 99.7 7.9E-16 1.7E-20 129.7 11.0 94 218-311 14-113 (125)
40 cd08392 C2A_SLP-3 C2 domain fi 99.7 5.6E-16 1.2E-20 133.2 10.1 98 217-314 12-115 (128)
41 cd04039 C2_PSD C2 domain prese 99.7 1.4E-15 3.1E-20 127.0 12.2 91 221-313 2-97 (108)
42 cd08387 C2A_Synaptotagmin-8 C2 99.6 7.1E-16 1.5E-20 130.4 10.2 97 218-314 14-113 (124)
43 cd04029 C2A_SLP-4_5 C2 domain 99.6 9.2E-16 2E-20 131.0 10.9 98 217-314 12-115 (125)
44 cd04018 C2C_Ferlin C2 domain t 99.6 1.3E-15 2.9E-20 134.8 12.1 115 222-338 2-132 (151)
45 cd04051 C2_SRC2_like C2 domain 99.6 1E-15 2.2E-20 129.5 10.5 116 221-339 1-125 (125)
46 cd08680 C2_Kibra C2 domain fou 99.6 9.4E-16 2E-20 131.4 10.3 98 216-313 10-113 (124)
47 cd04015 C2_plant_PLD C2 domain 99.6 7E-15 1.5E-19 130.8 15.8 121 219-343 6-157 (158)
48 cd04011 C2B_Ferlin C2 domain s 99.6 1.9E-15 4.1E-20 125.8 11.3 91 217-313 1-95 (111)
49 cd08688 C2_KIAA0528-like C2 do 99.6 1.7E-15 3.6E-20 126.2 10.9 90 222-313 1-94 (110)
50 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.4E-15 2.9E-20 128.5 10.4 96 218-313 14-112 (124)
51 cd04050 C2B_Synaptotagmin-like 99.6 2.4E-15 5.3E-20 124.0 10.7 87 222-313 2-88 (105)
52 cd08388 C2A_Synaptotagmin-4-11 99.6 2.3E-15 5E-20 129.1 10.6 96 218-313 14-114 (128)
53 cd04032 C2_Perforin C2 domain 99.6 6.6E-15 1.4E-19 126.8 12.7 94 216-312 24-118 (127)
54 cd08406 C2B_Synaptotagmin-12 C 99.6 2.2E-15 4.9E-20 131.0 9.4 93 217-309 12-109 (136)
55 cd08386 C2A_Synaptotagmin-7 C2 99.6 6.1E-15 1.3E-19 124.6 11.6 97 218-314 14-114 (125)
56 cd08676 C2A_Munc13-like C2 dom 99.6 5.2E-15 1.1E-19 131.4 11.4 96 213-312 21-143 (153)
57 cd08373 C2A_Ferlin C2 domain f 99.6 1.4E-14 3.1E-19 123.0 13.5 114 226-346 2-118 (127)
58 cd04009 C2B_Munc13-like C2 dom 99.6 5.8E-15 1.2E-19 127.0 10.6 93 220-312 16-117 (133)
59 cd08685 C2_RGS-like C2 domain 99.6 4.1E-15 8.9E-20 126.2 9.4 94 219-313 11-109 (119)
60 cd04038 C2_ArfGAP C2 domain pr 99.6 1.1E-14 2.3E-19 128.1 12.4 89 220-312 2-90 (145)
61 cd08390 C2A_Synaptotagmin-15-1 99.6 7.4E-15 1.6E-19 123.5 10.8 98 217-314 11-112 (123)
62 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.2E-15 1.3E-19 126.1 10.1 95 216-310 9-108 (133)
63 cd08389 C2A_Synaptotagmin-14_1 99.6 5E-15 1.1E-19 126.3 9.4 97 217-314 13-113 (124)
64 cd08521 C2A_SLP C2 domain firs 99.6 6.1E-15 1.3E-19 123.9 9.8 97 217-313 11-113 (123)
65 cd04040 C2D_Tricalbin-like C2 99.6 1.4E-14 3E-19 120.5 11.4 112 222-338 1-113 (115)
66 cd04045 C2C_Tricalbin-like C2 99.6 1.9E-14 4.2E-19 122.0 12.5 92 221-314 2-93 (120)
67 cd04030 C2C_KIAA1228 C2 domain 99.6 9.7E-15 2.1E-19 123.5 10.6 96 218-313 14-116 (127)
68 KOG1028|consensus 99.6 8.8E-15 1.9E-19 148.9 12.3 129 216-345 163-295 (421)
69 cd08402 C2B_Synaptotagmin-1 C2 99.6 8.5E-15 1.8E-19 126.0 9.6 93 218-310 13-110 (136)
70 cd08407 C2B_Synaptotagmin-13 C 99.6 7.4E-15 1.6E-19 128.2 9.0 94 217-310 12-112 (138)
71 cd08675 C2B_RasGAP C2 domain s 99.6 1.9E-14 4E-19 125.0 11.0 103 222-325 1-121 (137)
72 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.5E-14 3.2E-19 124.6 9.8 92 219-310 14-110 (136)
73 cd08394 C2A_Munc13 C2 domain f 99.6 3.6E-14 7.7E-19 122.2 12.0 86 221-314 3-88 (127)
74 cd08403 C2B_Synaptotagmin-3-5- 99.5 2.1E-14 4.5E-19 123.3 9.5 93 217-309 11-108 (134)
75 cd08405 C2B_Synaptotagmin-7 C2 99.5 2.6E-14 5.7E-19 122.9 10.0 94 218-311 13-111 (136)
76 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 2.8E-14 6E-19 127.5 9.9 95 218-312 25-125 (162)
77 cd04048 C2A_Copine C2 domain f 99.5 3.3E-14 7.2E-19 119.8 9.7 88 226-313 6-102 (120)
78 cd08408 C2B_Synaptotagmin-14_1 99.5 4.9E-14 1.1E-18 122.7 10.9 95 216-310 11-111 (138)
79 cd04021 C2_E3_ubiquitin_ligase 99.5 1.3E-13 2.8E-18 117.6 13.1 89 221-313 3-91 (125)
80 cd04052 C2B_Tricalbin-like C2 99.5 9.6E-14 2.1E-18 115.8 12.1 102 237-345 9-110 (111)
81 cd08383 C2A_RasGAP C2 domain ( 99.5 1.4E-13 3E-18 114.5 12.9 114 222-343 2-117 (117)
82 cd04026 C2_PKC_alpha_gamma C2 99.5 8.1E-14 1.7E-18 118.9 10.9 94 220-313 13-110 (131)
83 cd08410 C2B_Synaptotagmin-17 C 99.5 4.5E-14 9.8E-19 121.9 9.2 92 217-308 11-107 (135)
84 cd08686 C2_ABR C2 domain in th 99.5 2.6E-13 5.6E-18 115.5 12.6 85 222-313 1-95 (118)
85 cd00275 C2_PLC_like C2 domain 99.5 3.6E-13 7.9E-18 113.5 12.9 117 220-343 2-127 (128)
86 cd08692 C2B_Tac2-N C2 domain s 99.5 1.3E-13 2.8E-18 120.0 10.4 95 216-310 10-109 (135)
87 cd08690 C2_Freud-1 C2 domain f 99.5 4.8E-13 1E-17 119.1 13.8 119 223-345 5-138 (155)
88 KOG0696|consensus 99.5 2E-14 4.2E-19 143.6 5.4 105 218-322 178-286 (683)
89 cd04047 C2B_Copine C2 domain s 99.5 2.3E-13 5E-18 112.6 10.1 87 225-312 5-99 (110)
90 cd08691 C2_NEDL1-like C2 domai 99.5 7.2E-13 1.6E-17 115.5 13.2 115 221-341 2-136 (137)
91 cd00276 C2B_Synaptotagmin C2 d 99.5 2.5E-13 5.5E-18 115.4 9.6 92 219-310 13-109 (134)
92 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.3E-13 7.1E-18 113.9 10.1 97 216-313 11-113 (123)
93 cd08409 C2B_Synaptotagmin-15 C 99.5 2.9E-13 6.2E-18 117.4 9.9 92 217-309 12-108 (137)
94 PF00168 C2: C2 domain; Inter 99.4 1.2E-12 2.5E-17 101.2 9.2 84 222-305 1-85 (85)
95 cd08374 C2F_Ferlin C2 domain s 99.4 3.1E-12 6.8E-17 111.1 10.8 101 222-322 2-133 (133)
96 cd04013 C2_SynGAP_like C2 doma 99.4 2E-11 4.3E-16 107.8 15.3 123 218-347 9-142 (146)
97 PLN03008 Phospholipase D delta 99.3 7.4E-12 1.6E-16 134.6 13.1 105 238-346 74-179 (868)
98 PLN02223 phosphoinositide phos 99.2 6.7E-11 1.5E-15 122.6 12.0 158 134-313 327-510 (537)
99 PLN03200 cellulose synthase-in 99.2 2.9E-11 6.3E-16 140.1 10.2 115 219-343 1979-2099(2102)
100 KOG1011|consensus 99.2 6.3E-11 1.4E-15 122.9 8.5 119 218-343 293-423 (1283)
101 smart00239 C2 Protein kinase C 99.2 4.4E-10 9.6E-15 88.1 11.4 92 222-313 2-94 (101)
102 PLN02952 phosphoinositide phos 99.1 1.1E-09 2.3E-14 115.6 14.6 143 151-313 420-572 (599)
103 cd00030 C2 C2 domain. The C2 d 99.1 1.4E-09 2.9E-14 84.4 10.4 89 222-312 1-90 (102)
104 KOG2059|consensus 99.0 6.2E-10 1.3E-14 116.7 9.7 122 221-347 6-128 (800)
105 KOG1028|consensus 99.0 6.3E-10 1.4E-14 113.5 9.6 95 216-310 294-393 (421)
106 PLN02230 phosphoinositide phos 99.0 1.5E-09 3.2E-14 114.4 11.5 143 151-313 419-571 (598)
107 PLN02222 phosphoinositide phos 99.0 2.1E-09 4.6E-14 113.0 12.4 143 151-313 402-554 (581)
108 PLN02228 Phosphoinositide phos 99.0 5.6E-09 1.2E-13 109.6 14.2 168 151-347 384-564 (567)
109 COG5038 Ca2+-dependent lipid-b 98.9 2.8E-09 6E-14 117.0 9.5 126 220-348 1040-1165(1227)
110 KOG0169|consensus 98.9 3.3E-09 7.2E-14 112.5 9.7 166 151-344 568-744 (746)
111 KOG1328|consensus 98.9 7.8E-10 1.7E-14 116.1 4.0 91 222-312 949-1048(1103)
112 KOG1328|consensus 98.8 8.7E-10 1.9E-14 115.8 1.8 124 218-343 112-300 (1103)
113 COG5038 Ca2+-dependent lipid-b 98.7 7.9E-08 1.7E-12 105.8 11.8 123 216-343 432-556 (1227)
114 KOG1264|consensus 98.7 8.6E-08 1.9E-12 102.1 11.2 138 151-312 1016-1161(1267)
115 PLN02270 phospholipase D alpha 98.4 2.9E-06 6.2E-11 92.0 14.5 121 219-346 7-150 (808)
116 KOG2059|consensus 98.4 3.5E-07 7.5E-12 96.5 6.6 126 222-348 133-280 (800)
117 KOG1031|consensus 98.4 5.6E-07 1.2E-11 93.3 8.0 120 220-343 3-135 (1169)
118 cd08689 C2_fungal_Pkc1p C2 dom 98.3 3.8E-06 8.3E-11 70.4 8.4 83 222-312 1-87 (109)
119 KOG1013|consensus 98.0 1.1E-06 2.3E-11 86.1 -0.3 139 217-358 90-241 (362)
120 KOG1013|consensus 97.8 2E-05 4.3E-10 77.4 4.8 88 222-309 235-327 (362)
121 PLN02352 phospholipase D epsil 97.6 0.00053 1.2E-08 74.5 12.1 116 218-346 8-132 (758)
122 KOG0905|consensus 97.4 0.00011 2.3E-09 81.7 3.9 97 218-314 1522-1624(1639)
123 KOG1326|consensus 97.4 3.9E-05 8.4E-10 83.9 0.0 92 216-309 202-302 (1105)
124 PLN02964 phosphatidylserine de 97.3 0.00049 1.1E-08 73.9 6.5 87 216-311 50-137 (644)
125 KOG1011|consensus 97.1 0.0015 3.2E-08 69.3 8.3 122 221-346 1126-1256(1283)
126 KOG1327|consensus 96.9 0.0022 4.8E-08 67.0 7.5 87 225-312 141-235 (529)
127 cd08398 C2_PI3K_class_I_alpha 96.9 0.018 4E-07 51.5 12.2 121 221-345 9-153 (158)
128 cd08683 C2_C2cd3 C2 domain fou 96.6 0.0034 7.4E-08 54.7 5.2 91 223-313 2-132 (143)
129 KOG1265|consensus 96.4 0.0071 1.5E-07 66.1 7.0 134 151-311 652-794 (1189)
130 cd04012 C2A_PI3K_class_II C2 d 95.7 0.057 1.2E-06 48.7 8.6 106 220-325 8-135 (171)
131 cd08693 C2_PI3K_class_I_beta_d 95.7 0.1 2.2E-06 47.4 10.2 103 221-325 9-136 (173)
132 cd08684 C2A_Tac2-N C2 domain f 95.6 0.017 3.6E-07 47.4 4.1 86 224-311 3-92 (103)
133 KOG2060|consensus 95.5 0.0088 1.9E-07 60.0 2.7 94 220-314 269-367 (405)
134 cd08380 C2_PI3K_like C2 domain 95.5 0.1 2.2E-06 46.0 9.2 103 222-325 10-123 (156)
135 cd08397 C2_PI3K_class_III C2 d 95.5 0.067 1.5E-06 47.9 8.0 71 240-310 29-106 (159)
136 PF10358 NT-C2: N-terminal C2 95.1 0.68 1.5E-05 39.6 13.1 121 218-345 5-136 (143)
137 PF15627 CEP76-C2: CEP76 C2 do 92.4 1.6 3.4E-05 39.3 10.3 123 217-343 6-149 (156)
138 PF00792 PI3K_C2: Phosphoinosi 92.4 0.74 1.6E-05 39.9 8.2 53 259-311 25-85 (142)
139 KOG3837|consensus 90.8 0.33 7.1E-06 49.7 4.6 122 218-345 365-504 (523)
140 cd08687 C2_PKN-like C2 domain 90.4 3.2 6.9E-05 34.3 9.2 84 241-343 9-92 (98)
141 PF12416 DUF3668: Cep120 prote 89.7 5.3 0.00012 40.2 12.2 119 222-346 2-134 (340)
142 cd08399 C2_PI3K_class_I_gamma 88.8 2.7 5.9E-05 38.4 8.7 88 222-310 12-121 (178)
143 smart00142 PI3K_C2 Phosphoinos 88.5 3.2 6.8E-05 34.0 8.2 70 224-293 15-91 (100)
144 PF14429 DOCK-C2: C2 domain in 78.8 15 0.00033 33.1 9.0 87 217-310 26-120 (184)
145 PF10409 PTEN_C2: C2 domain of 77.8 20 0.00044 30.3 9.0 79 230-308 14-94 (134)
146 PF15625 CC2D2AN-C2: CC2D2A N- 72.8 21 0.00046 32.0 8.2 67 242-310 38-105 (168)
147 KOG1327|consensus 70.1 17 0.00036 38.7 7.8 57 257-313 44-104 (529)
148 cd08694 C2_Dock-A C2 domains f 68.0 54 0.0012 30.6 9.9 53 257-309 56-114 (196)
149 cd08695 C2_Dock-B C2 domains f 63.6 57 0.0012 30.2 9.1 53 257-309 56-112 (189)
150 PF07162 B9-C2: Ciliary basal 46.5 2.1E+02 0.0046 25.4 11.0 45 264-308 54-101 (168)
151 cd08679 C2_DOCK180_related C2 45.5 63 0.0014 29.0 6.3 49 262-310 60-115 (178)
152 cd08696 C2_Dock-C C2 domains f 43.8 2.6E+02 0.0056 25.6 10.2 52 258-309 58-117 (179)
153 PF01060 DUF290: Transthyretin 43.5 47 0.001 25.9 4.5 31 282-312 11-41 (80)
154 KOG1452|consensus 43.3 50 0.0011 33.3 5.5 80 218-300 49-130 (442)
155 PF11618 DUF3250: Protein of u 43.2 77 0.0017 26.5 6.0 81 261-343 17-104 (107)
156 cd08697 C2_Dock-D C2 domains f 37.4 3.3E+02 0.0072 25.1 10.8 53 258-310 60-123 (185)
157 PTZ00447 apical membrane antig 34.2 3.6E+02 0.0078 27.7 9.9 96 240-342 73-171 (508)
No 1
>KOG1326|consensus
Probab=100.00 E-value=1.7e-46 Score=396.26 Aligned_cols=239 Identities=33% Similarity=0.548 Sum_probs=218.0
Q ss_pred CCCcccccCcccccC--CCCCCCccchhhhhhhhccccccchhHHHHHhhhhhhhhhhccCeeeeecCCCCcCCcccCCC
Q psy4890 74 PSGSNVYDTFTIPEV--DTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEH 151 (364)
Q Consensus 74 ~~~~~~~~~~~~~~~--~~~~e~~iDWWsKyyaS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkvy~~eLE~~~~F~~ 151 (364)
|..+..++......+ ++.+|.++|||+|||+|.++..+++.|. ++.+++||||++|||+++||++
T Consensus 486 ~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~-------------~K~~~~LKiyn~ele~v~ef~~ 552 (1105)
T KOG1326|consen 486 DNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYE-------------HKINVTLKIYNMELEMVAEFRG 552 (1105)
T ss_pred hhhhhhccccCCCCCccccccceehhhhhhccccccccccccccc-------------cccceEEEEehhhhhhHHHHhh
Confidence 334445555554443 4567888999999999999999999883 6779999999999999999999
Q ss_pred ccccccccccccccccCCCCCccccceeeEEEeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEecC
Q psy4890 152 FADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYG 231 (364)
Q Consensus 152 f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A~d 231 (364)
|+||+++|+||||+.+.+ ..+++++|+|||+|+|||+|+++..+. +||+++.+ |.+.|+.++|||||++|.+
T Consensus 553 l~D~~~~f~l~rG~~~~e---~~e~~Ivg~fKgl~rIyp~~~~~~~p~-~pr~~~~~----~~~~pi~~LvrVyvv~A~~ 624 (1105)
T KOG1326|consen 553 LQDWAVTFKLYRGKEGLE---CLEQQIVGEFKGLFRIYPVPRNPSSPA-PPRHFLDL----PKEEPIKCLVRVYVVEAFS 624 (1105)
T ss_pred hhhccceeEeeeccccCC---CcccchhhhhhcceeeecCCCccCCCC-Chhhhhcc----cccCcceeeEEEEEEEeee
Confidence 999999999999998744 357899999999999999998887775 78999998 9999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccc
Q psy4890 232 LHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311 (364)
Q Consensus 232 L~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr 311 (364)
|+|.|.+|.+|||+++.+|++...++++++++|+||+|+++|++++.+|.+++|.|+|||+|.++.|+.||++.|||+|+
T Consensus 625 L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 625 LQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENR 704 (1105)
T ss_pred ccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccccCCCCCc
Q psy4890 312 FYSRHRGSCARWTSDLEVSGSSP 334 (364)
Q Consensus 312 ~~s~~~a~~gL~p~~y~~~G~~~ 334 (364)
++++|+++||+ +++|+++|++.
T Consensus 705 ~~T~~~a~cgl-aq~y~v~g~n~ 726 (1105)
T KOG1326|consen 705 WLTRHRARCGL-AQTYCVSGANI 726 (1105)
T ss_pred ccCcCCcccCc-cceeeeecccc
Confidence 99999999999 99999998763
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=2.2e-19 Score=153.37 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=93.1
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeec-CCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT-NQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD 298 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~-~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD 298 (364)
..|+|+|++|++++..+ .|++||||++.+++++.+|++ +. +++||+|||.|.|.+.. ....|.|+|||+|.+++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v--~~~~~~nP~WNe~F~f~v~~-~~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPT--AYNGAKNPRWNKTIQCTLPE-GVDSIYIEIFDERAFTMD 77 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEE--ccCCCCCCccCeEEEEEecC-CCcEEEEEEEeCCCCcCC
Confidence 46899999999988777 799999999999998876654 44 48999999999999864 346799999999999999
Q ss_pred ceeEEEEeeccccccc--cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 299 DYIGMTEMDLESRFYS--RHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 299 D~IGet~IdLenr~~s--~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
|+||++.|+|.+.+.. ....|..|.+ .......|+|+++|+|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~---~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSG---KQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcC---ccCCCCceEEEEEEeC
Confidence 9999999999754432 1233444421 1123678999999997
No 3
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=6.5e-20 Score=156.23 Aligned_cols=107 Identities=46% Similarity=0.891 Sum_probs=98.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
+|||+|++|++|++.|..|.+||||++.++++...++|.++.+++||.||+.|.|.+..+....|.|+|||+|.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 37999999999999999999999999999987766677778899999999999999988888899999999999999999
Q ss_pred eEEEEeeccccccccCCCcccccccccc
Q psy4890 301 IGMTEMDLESRFYSRHRGSCARWTSDLE 328 (364)
Q Consensus 301 IGet~IdLenr~~s~~~a~~gL~p~~y~ 328 (364)
||++.|+|+++++++++.+|++ ++.++
T Consensus 81 iG~~~i~l~~~~~~~~~~~~~~-~~~~~ 107 (124)
T cd04037 81 IGETVIDLEDRFFSKHRATCGL-PPTYE 107 (124)
T ss_pred eEEEEEeecccccchHHHhccC-CCccc
Confidence 9999999999999888999999 77776
No 4
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=3.1e-19 Score=154.92 Aligned_cols=122 Identities=26% Similarity=0.384 Sum_probs=101.8
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
..|+|+|++|++|++.|..|.+||||++.++++..+| .++.+++||.||++|.|.+..+....|.|+|||+|.+++|+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT--~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKT--KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeec--cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 6789999999999999999999999999998876655 56899999999999999998777889999999999999999
Q ss_pred eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890 300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ 344 (364)
Q Consensus 300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq 344 (364)
+||++.|+|.++..........+ ..+...++.++|+|++++.||
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~-~~~~~~~~~~~g~i~l~~~~~ 136 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPI-TKRLLLHEVPTGEVVVKLDLQ 136 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcE-EEEeccccccceeEEEEEEeC
Confidence 99999999988764211111222 334445788999999999885
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.9e-19 Score=153.12 Aligned_cols=118 Identities=17% Similarity=0.261 Sum_probs=94.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeec-----CCCCeEEEEEEecCCCC
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSF-----PTDAKLTVEIKDHDSVS 296 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~-----p~~~~L~V~V~D~D~is 296 (364)
|+|+|++|+||++.+.+|.+||||++.+++.+.+| +++.+++||+||+.|.|.+.. +....|.|+|||++.++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT--~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYST--SVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeee--eeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 58999999999999999999999999999876655 568899999999999999865 35778999999999999
Q ss_pred CCceeEEEEeeccccccc---cCCCccccccccccCCCCCceEEEEEEE
Q psy4890 297 KDDYIGMTEMDLESRFYS---RHRGSCARWTSDLEVSGSSPGEVLPGIT 342 (364)
Q Consensus 297 kDD~IGet~IdLenr~~s---~~~a~~gL~p~~y~~~G~~~GEIllSL~ 342 (364)
+|++||++.|+|.+.... ....|..|.+.. ......+|+|+++|+
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~-~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP-GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCC-CCCccccceEEEEeC
Confidence 999999999999987532 122345552211 112356899999874
No 6
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=8.6e-19 Score=146.71 Aligned_cols=115 Identities=27% Similarity=0.351 Sum_probs=94.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeee-cCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV-TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i-~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
.|+|+|++|++|++.+..|.+||||++.+++...+|+ ++ .+++||+||+.|.|.+..+....|.|+|||++..+ |+
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~--~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~ 78 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTK--TDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PD 78 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccc--cccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Cc
Confidence 5789999999999999999999999999988655553 34 45799999999999998767789999999999886 99
Q ss_pred eeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 300 YIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 300 ~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
+||++.++|.++... ....|..| ...|..+|+|+++|+|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L-----~~~~~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYEL-----TLKGRYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEe-----ccCCcEeeEEEEEEEC
Confidence 999999999987543 22334433 1245689999999987
No 7
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.4e-18 Score=148.45 Aligned_cols=122 Identities=19% Similarity=0.308 Sum_probs=98.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE-----eeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE-----INDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV 295 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~-----~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i 295 (364)
+|+|+|++|++|++.|..|.+||||++.+++.. ...+|.++.+++||.||+.|.|.+. +....|.|+|||+|.+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECCCC
Confidence 378999999999999999999999999986541 1235567899999999999999986 4467899999999999
Q ss_pred CCCceeEEEEeeccccccccCCCccccccccccCC-----CCCceEEEEEEEE
Q psy4890 296 SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVS-----GSSPGEVLPGITL 343 (364)
Q Consensus 296 skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~-----G~~~GEIllSL~f 343 (364)
++|++||++.+++.++.....+..+++.+.+|.++ +..+|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 99999999999999887653333244444555443 4579999999987
No 8
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=5e-18 Score=141.66 Aligned_cols=114 Identities=25% Similarity=0.420 Sum_probs=94.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
+|+|+|++|+||++.+.+|.+||||+++++++..+| .++.+++||.||+.|.|.+..+....|.|+|||++..++|++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKS--KVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEec--ccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence 378999999999999999999999999998766554 568899999999999999876668899999999999999999
Q ss_pred eEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890 301 IGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQ 344 (364)
Q Consensus 301 IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq 344 (364)
||++.++|.++... .+..|+.| . +..|+|++.+.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L-------~-~~~G~~~~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELEL-------E-DGEGSLLLLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEc-------c-CCCcEEEEEEEec
Confidence 99999999876543 22223333 3 2369999998873
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=7.3e-18 Score=148.84 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=98.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecC-CCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTN-QINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~-tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
|+|+|++|++|++.|.+|.+||||++.++++..+|++ +.+ ++||+|||.|+|.+..+....|.|.|||++..++|++
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~--~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRP--SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEe--ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCe
Confidence 7899999999999999999999999999987776654 444 7999999999999977777899999999999989999
Q ss_pred eEEEEeeccccccc-----cCCCccccccccc----cCCCCCceEEEEEEEEeecc
Q psy4890 301 IGMTEMDLESRFYS-----RHRGSCARWTSDL----EVSGSSPGEVLPGITLQSGE 347 (364)
Q Consensus 301 IGet~IdLenr~~s-----~~~a~~gL~p~~y----~~~G~~~GEIllSL~fq~g~ 347 (364)
||++.|+|.++... ....|..|....- ......+|+|+|+|+|.+++
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 99999999986432 1234554421110 01124679999999997664
No 10
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=1.6e-17 Score=140.30 Aligned_cols=120 Identities=24% Similarity=0.374 Sum_probs=96.0
Q ss_pred EEEEEEEEecCCCCCCC--CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890 221 TIRVYIVRAYGLHPKDK--DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD 298 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD 298 (364)
+|+|+|++|++|++.+. .|.+||||++.++.+..+| .++.+++||.||+.|.|.+..+....|.|+|||++..++|
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT--~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKT--QTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEec--ceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 57899999999999998 8999999999998776554 5688999999999999999876788999999999999999
Q ss_pred ceeEEEEeeccccccc----cCCCccccccccccCCCCCceEEEEEEE
Q psy4890 299 DYIGMTEMDLESRFYS----RHRGSCARWTSDLEVSGSSPGEVLPGIT 342 (364)
Q Consensus 299 D~IGet~IdLenr~~s----~~~a~~gL~p~~y~~~G~~~GEIllSL~ 342 (364)
++||++.|+|.++... ....|..|.+..-......+|+|+++++
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 9999999999987632 1223334422211112347999999886
No 11
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=1.2e-17 Score=142.17 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCC---CCeEEEEEEecCCCC-C
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT---DAKLTVEIKDHDSVS-K 297 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~---~~~L~V~V~D~D~is-k 297 (364)
|+|+|++|++|++.+.+|.+||||++.+++++.+| .++.+++||+||+.|.|.+..+. ...|.|+|||++.++ +
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT--~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRT--RTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecc--eeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 68999999999999999999999999999876654 56789999999999999987543 468999999999887 8
Q ss_pred CceeEEEEeecccccc-c-cCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890 298 DDYIGMTEMDLESRFY-S-RHRGSCARWTSDLEVSGSSPGEVLPGITLQ 344 (364)
Q Consensus 298 DD~IGet~IdLenr~~-s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq 344 (364)
|++||++.|+|.++.. + ....|..|+. ....+..+|||+|++++.
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~--~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEK--RGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeee--CCCCCCccEEEEEEEEEc
Confidence 9999999999988762 1 1223444411 111335799999999873
No 12
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=1.2e-17 Score=141.97 Aligned_cols=114 Identities=23% Similarity=0.315 Sum_probs=91.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
|+|+|++|+||++. .+||||++.++++..+| +++.+++||+||+.|.|.+..+....|.++|||+|.. +|++|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT--~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGST--KAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccc--cccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 68999999999987 78999999998765544 5688999999999999998767788999999999987 89999
Q ss_pred EEEEeeccccccccCCCccccccccccCC----CCCceEEEEEEEE
Q psy4890 302 GMTEMDLESRFYSRHRGSCARWTSDLEVS----GSSPGEVLPGITL 343 (364)
Q Consensus 302 Get~IdLenr~~s~~~a~~gL~p~~y~~~----G~~~GEIllSL~f 343 (364)
|++.++|.++........... +.||.+. ...+|+|+++|+|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~-~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLA-PQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCC-cceEEccCCCCCccceEEEEEEEe
Confidence 999999998765322111111 3344332 3578999999998
No 13
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.6e-17 Score=141.07 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=93.8
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 222 IRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
|+|.|++|+||++.+ .+|.+||||.+.++++.. .+|+++.+|+||+|||.|.|.+. .....|.|.|||+|.+++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~-~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEV-FRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccE-EEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCCCCCCce
Confidence 568899999999974 568999999999976532 34566889999999999999986 345799999999999999999
Q ss_pred eEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 301 IGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 301 IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
||++.++|+++... ....|..|+|. ...+..+|+|+++++|
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPV--DADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEcc--CCCCcccEEEEEEEEC
Confidence 99999999887532 23346666443 2234469999999975
No 14
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=2.8e-17 Score=138.80 Aligned_cols=118 Identities=24% Similarity=0.387 Sum_probs=97.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
|+|+|++|++|++.|.+|.+||||++.+++...+| .++.+++||.||+.|.|.+..+....|.|+|||++..++|++|
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLET--SVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEec--eeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 68999999999999999999999999998766554 5688999999999999999766678899999999999999999
Q ss_pred EEEEeeccccccc-cCCCcccccccccc--CCCCCceEEEEEE
Q psy4890 302 GMTEMDLESRFYS-RHRGSCARWTSDLE--VSGSSPGEVLPGI 341 (364)
Q Consensus 302 Get~IdLenr~~s-~~~a~~gL~p~~y~--~~G~~~GEIllSL 341 (364)
|++.++|.++... ....|..|.|.... .++.+.|.|.+.|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999887543 23456666443222 3567899998875
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.2e-17 Score=140.56 Aligned_cols=116 Identities=21% Similarity=0.282 Sum_probs=93.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
|+|+|++|++|++.+..|.+||||++.+++. ....+|+++.+++||+||+.|.|.+..+....|.|+|||+|.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 6899999999999998999999999998642 3344667789999999999999998766677899999999998 8999
Q ss_pred eEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890 301 IGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ 344 (364)
Q Consensus 301 IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq 344 (364)
||++.++|.++..+. . . ..++.+.....|+|.+.+.+|
T Consensus 81 iG~~~~~l~~l~~g~-~----~-~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLGE-K----V-RVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCCC-c----E-EEEEECCCCCCceEEEEEEee
Confidence 999999998765321 1 1 223334444689999999875
No 16
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=2.7e-17 Score=138.73 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=93.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
|+|+|++|++|+..|.+|.+||||++.+++.. ..+|.++.+++||.||+.|.|.+..+ ...|.|+|||+|..++|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT-VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE-EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 68999999999999999999999999997632 23445678999999999999998644 57899999999999999999
Q ss_pred EEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEe
Q psy4890 302 GMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQ 344 (364)
Q Consensus 302 Get~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq 344 (364)
|++.++|.++..+. ...+..|.. .......|+|++.++|.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~---~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLED---PNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCC---CCCccCceEEEEEEEEC
Confidence 99999998876432 223344411 11135789999999873
No 17
>KOG1030|consensus
Probab=99.75 E-value=7.4e-18 Score=150.03 Aligned_cols=91 Identities=27% Similarity=0.468 Sum_probs=83.9
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
.+++|.|++|.||..+|..+++||||++.+|+++.+|+ ++.+++||+||+.|.|.+.. ....|+++|||+|.+++||
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~--~v~~n~NPeWNe~ltf~v~d-~~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTR--VVYKNLNPEWNEELTFTVKD-PNTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeee--eecCCCCCcccceEEEEecC-CCceEEEEEEeCCCCCccc
Confidence 57899999999999999889999999999999999886 68999999999999999984 4678999999999999999
Q ss_pred eeEEEEeecccccc
Q psy4890 300 YIGMTEMDLESRFY 313 (364)
Q Consensus 300 ~IGet~IdLenr~~ 313 (364)
+||++.|+|...+-
T Consensus 83 ~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 83 FMGEATIPLKPLLE 96 (168)
T ss_pred ccceeeeccHHHHH
Confidence 99999999987653
No 18
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=6.3e-17 Score=139.53 Aligned_cols=119 Identities=22% Similarity=0.358 Sum_probs=91.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEe-ecCC--------CCeEEEEEEe
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQG-SFPT--------DAKLTVEIKD 291 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v-~~p~--------~~~L~V~V~D 291 (364)
.|+|+|++|++|+++|..|.+||||++.+++...+| .++.+++||.||+.|.|.+ .++. ...|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT--~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQET--EVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEe--eeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 578999999999999999999999999998766555 5689999999999999974 3221 2579999999
Q ss_pred cCCCCCCceeEEEEeeccccccccCCCccccccccccC--CCCCceEEEEEEEE
Q psy4890 292 HDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV--SGSSPGEVLPGITL 343 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~--~G~~~GEIllSL~f 343 (364)
+|..++|++||++.+.......... ..... ++|+.+ .|..+|||++++.+
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~-~~~~~-~~W~~L~~~~~~~Geil~~~~~ 131 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEE-DFPPK-LQWFPIYKGGQSAGELLAAFEL 131 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCC-CCCCC-ceEEEeecCCCchhheeEEeEE
Confidence 9999999999999985432222110 11111 455543 46789999999987
No 19
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.72 E-value=1.5e-16 Score=135.85 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=92.2
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
..|+|.|++|+||++. +.+||||++.+++... .+|++ .+++||.|||.|.|.+..+....|.|.|||++..++|+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~-~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKV-ARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeE-EEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 3589999999999875 5789999999987432 23444 56899999999999876454467999999999999999
Q ss_pred eeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEee
Q psy4890 300 YIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQS 345 (364)
Q Consensus 300 ~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~ 345 (364)
+||++.|+|.++..+ ....|..|.+.. .......|+|+++|+|..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~-~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSAS-PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCC-CCCCCcCcEEEEEEEEEc
Confidence 999999999987543 223466664331 112456899999999964
No 20
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=6.2e-17 Score=139.23 Aligned_cols=114 Identities=25% Similarity=0.257 Sum_probs=89.5
Q ss_pred EEEEEEEecC---CCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCC--
Q psy4890 222 IRVYIVRAYG---LHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVS-- 296 (364)
Q Consensus 222 LrV~Vv~A~d---L~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~is-- 296 (364)
|.|+|++|+| |+.+|..|.+||||++++++++.+| +++.+++||+|||+|.|.+..+. ..|.|+|||+|.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rT--k~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRT--RTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEc--CcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcccc
Confidence 6899999999 8899999999999999999887765 55789999999999999997544 58999999999874
Q ss_pred ----CCceeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEE
Q psy4890 297 ----KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLP 339 (364)
Q Consensus 297 ----kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIll 339 (364)
+|++||++.|+|..+... ....|..|.... ...+...|+|..
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN-PSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC-CCCccCCcEEEe
Confidence 899999999999887543 223455552111 112346777764
No 21
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.72 E-value=1.2e-16 Score=135.12 Aligned_cols=121 Identities=19% Similarity=0.334 Sum_probs=96.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
.++|+|++|++|++.+.+|.+||||++.+++. ....+|.++.+++||.||+.|.|.+..+....|.|+|||+|..++|+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999999999999999988643 33346677899999999999999987665788999999999999999
Q ss_pred eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890 300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSG 346 (364)
Q Consensus 300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g 346 (364)
+||++.++|.+...+..+.. +..++.+. .+|+|++.+++++.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~---~~~w~~l~--~~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLP---REIWLDLD--TQGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCC---ceEEEEcC--CCCeEEEEEEEeee
Confidence 99999999987654320111 12334443 37999999999665
No 22
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=9.2e-17 Score=136.67 Aligned_cols=121 Identities=20% Similarity=0.307 Sum_probs=95.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
|.|+|++|+||+. ..|.+||||++.++......+|.++.+++||+||+.|.|.+. +....|.|+|||+|..++|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-PNSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC-CCCCEEEEEEEECCCCCCCceE
Confidence 3588999999988 679999999999974333346677899999999999999985 4567899999999999999999
Q ss_pred EEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890 302 GMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQSG 346 (364)
Q Consensus 302 Get~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g 346 (364)
|++.++|..+... ....+..|++... ..+..+|+|.+++.|.+.
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGRPY-EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCCCC-CCCCcceEEEEEEEEecc
Confidence 9999999886533 2234555533221 134579999999999654
No 23
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.9e-16 Score=134.06 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=92.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
|.|+|++|++|++.|.+|.+||||++.+++... .+|.++.+++||+||+.|.|.+. +....|.|.|||++.+++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~kT~v~~~t~nP~Wne~f~~~~~-~~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI-IRTATVWKTLNPFWGEEYTVHLP-PGFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEee-eeeeeEcCCCCCcccceEEEeeC-CCCCEEEEEEEECCCCCCCCEE
Confidence 578999999999999999999999999986543 35567899999999999999985 3457899999999999999999
Q ss_pred EEEEeeccccccc--cCCCccccccccccCCCCCceEEEEEEE
Q psy4890 302 GMTEMDLESRFYS--RHRGSCARWTSDLEVSGSSPGEVLPGIT 342 (364)
Q Consensus 302 Get~IdLenr~~s--~~~a~~gL~p~~y~~~G~~~GEIllSL~ 342 (364)
|++.++++...-. ....|..|.+ ....+...|+|++++.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~--~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTE--VDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECee--eCCCCccccEEEEEEE
Confidence 9999998766421 1233454422 1223346899999875
No 24
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=4.2e-17 Score=138.82 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=80.2
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD 291 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D 291 (364)
.|....|.|.|++|++|+ ..|.+||||++.+.. +..+.+|+++++|+||+|||+|.|.++.. ....|.|+|||
T Consensus 10 ~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 567778899999999999 347799999999963 33355678899999999999999997542 36789999999
Q ss_pred cCCCCCCceeEEEEeecccccc
Q psy4890 292 HDSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLenr~~ 313 (364)
+|.++++|+||++.++|.+.-.
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred CCCCCCCceEEEEEEccccccC
Confidence 9999999999999999987643
No 25
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=1.6e-16 Score=132.78 Aligned_cols=114 Identities=25% Similarity=0.419 Sum_probs=94.0
Q ss_pred EEEEEEEEecCCCCCCC------CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC
Q psy4890 221 TIRVYIVRAYGLHPKDK------DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS 294 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~------~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~ 294 (364)
+|+|+|++|++|++.|. .|.+||||++.++++..+| .++.+++||.||+.|.|.+..+....|.|+|||++.
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT--~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKS--KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEc--cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 57899999999999875 3789999999998865554 568899999999999999976677899999999998
Q ss_pred CCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 295 VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 295 iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
. +|++||++.++|.++.... ....+|.+.+..+|+|++++.+
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~------~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKG------FIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccC------ccceEEECcCCCCceEEEEEeC
Confidence 8 8999999999998875321 1144555566678999998753
No 26
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=3.7e-16 Score=133.24 Aligned_cols=120 Identities=17% Similarity=0.331 Sum_probs=96.8
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
.+++|+|++|++|...|..|.+||||++.++++..+| .++.+++||+||+.|.|.+.. ....|.|+|||++.+ +|+
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~~-~d~ 78 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRS--PVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNLL-CDE 78 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEe--CccCCCCCCcccceEEEEecC-CCCEEEEEEEECCCC-CCC
Confidence 5789999999999999999999999999999877655 568999999999999998764 477899999999987 589
Q ss_pred eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890 300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ 344 (364)
Q Consensus 300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq 344 (364)
+||++.+++.+.. +....+..|.......++...|+|.+++.+.
T Consensus 79 ~lG~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND-SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC-CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999997642 2223344443222234678899999998874
No 27
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=9.6e-17 Score=136.92 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=77.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEE-C----CEEeeeeeeeecCCCCCccceEEEEEeec---CCCCeEEEEEEecC
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKT-G----SVEINDRENYVTNQINPYFGRHFEIQGSF---PTDAKLTVEIKDHD 293 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~L-g----~~~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L~V~V~D~D 293 (364)
|+|.|++|++|++.+ .|.+||||+|++ | .+..+.+|+++.+++||+|||.|.|.+.. +....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 689999999999988 499999999997 3 23334567788999999999999999863 34567999999999
Q ss_pred CCCCCceeEEEEeecccccc
Q psy4890 294 SVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 294 ~iskDD~IGet~IdLenr~~ 313 (364)
..++|++||++.++|.+...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~ 100 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQ 100 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcC
Confidence 88899999999999988764
No 28
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.70 E-value=1.1e-16 Score=133.38 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=84.5
Q ss_pred EEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEecCCC
Q psy4890 221 TIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKDHDSV 295 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~D~i 295 (364)
+|+|+|++|++|++.|.. |.+||||++.+... +...+|+++.+++||+||+.|.|.+..+ ....|.|+|||+|.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 589999999999999988 99999999998532 2334567889999999999999988655 357899999999999
Q ss_pred CCCceeEEEEeeccccccccCCCcccc
Q psy4890 296 SKDDYIGMTEMDLESRFYSRHRGSCAR 322 (364)
Q Consensus 296 skDD~IGet~IdLenr~~s~~~a~~gL 322 (364)
++||+||++.++|.++. ..+.|.++
T Consensus 82 ~~dd~lG~~~i~l~~l~--~~~~~~~~ 106 (111)
T cd04041 82 TADDRLGRVEIDLKELI--EDRNWMGR 106 (111)
T ss_pred CCCCcceEEEEEHHHHh--cCCCCCcc
Confidence 99999999999998875 35556655
No 29
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=4.1e-16 Score=130.84 Aligned_cols=120 Identities=24% Similarity=0.324 Sum_probs=93.6
Q ss_pred EEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890 220 VTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD 298 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD 298 (364)
..|+|+|++|++|+..+ ..|.+||||++.+++.....+|.++.+++||.||+.|.|.+. +....|.|+|||++..++|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence 35889999999999765 457799999999986212234466899999999999999987 5678999999999999999
Q ss_pred ceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 299 DYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 299 D~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
++||++.++|.++....... .+ ......++..+|+|+++|+|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~--~~-~~~~~~~~k~~G~i~~~l~~ 122 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE--NL-TKNLLRNGKPVGELNYDLRF 122 (124)
T ss_pred ceeEEEEEEHHHhccCcccc--Cc-chhhhcCCccceEEEEEEEe
Confidence 99999999999876432211 11 11112367789999999998
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.69 E-value=1.5e-16 Score=135.34 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=80.4
Q ss_pred eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEe-e--cCCCCeEEEEEEec
Q psy4890 219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQG-S--FPTDAKLTVEIKDH 292 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v-~--~p~~~~L~V~V~D~ 292 (364)
...|+|.|++|+||++.+ .|.+||||++.+.+ ...+.+|+++++++||+|||+|.|.+ . ......|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 355889999999999999 99999999999963 22344667889999999999999986 2 23577999999999
Q ss_pred CCCCCCceeEEEEeecccccc
Q psy4890 293 DSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~ 313 (364)
|.+++|++||++.|+|.+...
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~ 111 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDL 111 (122)
T ss_pred CCCcCCcEEEEEEEecccccc
Confidence 999999999999999988764
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.69 E-value=7e-16 Score=128.91 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=94.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
.|+|+|++|+||+..+..+.+||||++.+++...+ |+++.++.||.|+++|.|.+.. ....|.|+|||++..++|++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~--T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQ--THTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeee--cceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCce
Confidence 47899999999999999999999999999876654 4668899999999999999853 36789999999999899999
Q ss_pred eEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 301 IGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 301 IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
||++.++|.++..+ ...|..|... ...+..+|+|++++.+
T Consensus 79 iG~~~~~l~~~~~~-~~~~~~l~~~--~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG-ERKWYALKDK--KLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC-CceEEECccc--CCCCceeeEEEEEEEe
Confidence 99999999876432 2345555221 1234579999999876
No 32
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=5.5e-16 Score=131.63 Aligned_cols=116 Identities=15% Similarity=0.269 Sum_probs=91.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC--C
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK--D 298 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk--D 298 (364)
|+|+|++|++|++.+..|.+||||++.+++ +.. +|.++.+++||.||+.|.|.+.. ...|.|+|||++.+++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~--kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTH--STDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccce--EccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 689999999999999999999999999963 333 44678999999999999999853 7899999999998875 5
Q ss_pred ceeEEEEeeccccccccC--CCccccccccccCCCCCceEEEEEE
Q psy4890 299 DYIGMTEMDLESRFYSRH--RGSCARWTSDLEVSGSSPGEVLPGI 341 (364)
Q Consensus 299 D~IGet~IdLenr~~s~~--~a~~gL~p~~y~~~G~~~GEIllSL 341 (364)
++||++.+++.++..... ..|+.|++......+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 899999999998864432 2344443322222456688988876
No 33
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.68 E-value=7.8e-16 Score=131.39 Aligned_cols=115 Identities=22% Similarity=0.380 Sum_probs=90.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC-----
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV----- 295 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i----- 295 (364)
.|+|+|++|++|+..|..|.+||||++.+++...+ |.++.+++||.||+.|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~k--T~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKR--TKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeee--cceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence 47899999999999999999999999999876554 45688999999999999998644 56899999999853
Q ss_pred ------CCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEE
Q psy4890 296 ------SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGI 341 (364)
Q Consensus 296 ------skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL 341 (364)
++|++||++.|+|.+.. .....|+.|.+. ...+..+|+|++++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~-~~~~~w~~L~~~--~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLS-GEMDVWYNLEKR--TDKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHcc-CCCCeEEECccC--CCCCcEeEEEEEEC
Confidence 57999999999998752 233345555332 12335699999874
No 34
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=1.3e-15 Score=130.37 Aligned_cols=118 Identities=18% Similarity=0.332 Sum_probs=93.3
Q ss_pred EEEEEEEEEecCCCCCCCC----------CCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEE
Q psy4890 220 VTIRVYIVRAYGLHPKDKD----------GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEI 289 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~----------G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V 289 (364)
..|+|+|++|++|.+.|.+ |.+||||++.++++.. .+|.++.+++||.||++|+|.+. ....|.|.|
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~-~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI-GKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE-eEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 5689999999999998863 6899999999987553 24456788999999999999985 568899999
Q ss_pred EecCCCCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890 290 KDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSG 346 (364)
Q Consensus 290 ~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g 346 (364)
||++.+++|++||++.++|.++.... ... . ..++.++ .+|+|++++++.+.
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~--~-~~w~~L~--~~G~l~l~~~~~~~ 131 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRG-SGS--F-DLWVDLE--PQGKLHVKIELKGS 131 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccC-CCc--c-cEEEEcc--CCcEEEEEEEEecC
Confidence 99999999999999999999876420 110 1 2233333 57999999999653
No 35
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=2.1e-16 Score=134.79 Aligned_cols=98 Identities=18% Similarity=0.293 Sum_probs=82.0
Q ss_pred ceeEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK 290 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~ 290 (364)
+....|+|+|++|+||+++|.. |.+||||++.+.+. ..+.+|+++++++||+|||+|.|.+... ....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3445688999999999999986 89999999998521 2334678899999999999999997532 3578999999
Q ss_pred ecCCCCCCceeEEEEeeccccccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLenr~~s 314 (364)
|+|.+++|++||++.|+|.+...+
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccC
Confidence 999999999999999999887543
No 36
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=4.8e-16 Score=136.95 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=79.9
Q ss_pred EEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEE-ecCC
Q psy4890 220 VTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIK-DHDS 294 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~-D~D~ 294 (364)
..|.|.|++|+||++.+ .+|.+||||++++... ..+.||+++++++||+|||+|.|.+. +.+..|.|+|| |++.
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR 107 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence 35789999999999874 6789999999999532 23556778999999999999999998 67889999999 6888
Q ss_pred CCCCceeEEEEeecccccc
Q psy4890 295 VSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 295 iskDD~IGet~IdLenr~~ 313 (364)
++++++||++.|+|...-.
T Consensus 108 ~~~~~~iG~~~i~L~~l~~ 126 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDL 126 (146)
T ss_pred CCCCceEEEEEEEcccccC
Confidence 9999999999999988643
No 37
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=7.2e-16 Score=136.04 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=90.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeec-----------C----CCC
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSF-----------P----TDA 283 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~-----------p----~~~ 283 (364)
|+|.|++|+||++ .+|.+||||++.+... ....+|+++.+++||+|||.|.|.+.. | ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 6899999999998 5799999999999652 233456778999999999999999852 2 235
Q ss_pred eEEEEEEecCCCCCCceeEEEEeeccccccc--cCCCccccccccccC--------CCCCceEEEEEE
Q psy4890 284 KLTVEIKDHDSVSKDDYIGMTEMDLESRFYS--RHRGSCARWTSDLEV--------SGSSPGEVLPGI 341 (364)
Q Consensus 284 ~L~V~V~D~D~iskDD~IGet~IdLenr~~s--~~~a~~gL~p~~y~~--------~G~~~GEIllSL 341 (364)
.|.|.|||++..++|++||++.|+|.++..+ ....|+.|++..-.. .+..+|.+++.+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999999999999999999987654 235577775442111 124577776654
No 38
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=9.8e-16 Score=129.57 Aligned_cols=109 Identities=28% Similarity=0.493 Sum_probs=91.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeec-CCCCCccceEEEEEeecC---CCCeEEEEEEecCCCC
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT-NQINPYFGRHFEIQGSFP---TDAKLTVEIKDHDSVS 296 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~-~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~D~is 296 (364)
.|+|+|++|++|++.+..+.+||||+++++++..++ .++. +++||.||+.|.|.+..+ ....|.|+|||++.++
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T--~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKS--KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeee--eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 478999999999999989999999999998766544 3445 589999999999999866 3678999999999999
Q ss_pred CCceeEEEEeeccccccc-cCCCccccccccccCCC
Q psy4890 297 KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSG 331 (364)
Q Consensus 297 kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G 331 (364)
+|++||++.++|.++... ....|..|+|..|++.+
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~~~~ 115 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVL 115 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeeccceEEEE
Confidence 999999999999988654 44568888888887643
No 39
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=7.9e-16 Score=129.67 Aligned_cols=94 Identities=23% Similarity=0.396 Sum_probs=79.8
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEe
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKD 291 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D 291 (364)
....|+|+|++|+||++.+.+|.+||||++.+.+ .....+|.++++++||+||++|.|.+..+ ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4456889999999999999999999999999864 22344567789999999999999986432 36789999999
Q ss_pred cCCCCCCceeEEEEeecccc
Q psy4890 292 HDSVSKDDYIGMTEMDLESR 311 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLenr 311 (364)
++..++|++||++.++|.+.
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 94 YDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred CCCCCCCcEeeEEEEecccc
Confidence 99999999999999999883
No 40
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.65 E-value=5.6e-16 Score=133.24 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=82.5
Q ss_pred ceeEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK 290 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~ 290 (364)
+....|.|.|++|+||++.|.. |.+||||++.+.+. ..+.||+++++++||+|||+|.|.+... ....|.|+||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 3445788999999999999975 99999999998532 2344677899999999999999997542 2579999999
Q ss_pred ecCCCCCCceeEEEEeeccccccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLenr~~s 314 (364)
|++.++++++||++.|+|.+..++
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccC
Confidence 999999999999999999987654
No 41
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=1.4e-15 Score=126.98 Aligned_cols=91 Identities=15% Similarity=0.311 Sum_probs=78.1
Q ss_pred EEEEEEEEecCCCCCCCC----CCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCCC
Q psy4890 221 TIRVYIVRAYGLHPKDKD----GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDSV 295 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~----G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~i 295 (364)
+|+|+|++|++|++.+.. +.+||||++.++++..+ |+++.+++||+||+.|.|.+... ....|.|+|||+|..
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~k--T~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFR--TSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEe--eeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 588999999999998742 35899999999876654 56789999999999999988643 345899999999999
Q ss_pred CCCceeEEEEeecccccc
Q psy4890 296 SKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 296 skDD~IGet~IdLenr~~ 313 (364)
++|++||++.++|.++.-
T Consensus 80 ~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 80 SFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCcceEEEEEEHHHHHh
Confidence 999999999999998753
No 42
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.65 E-value=7.1e-16 Score=130.43 Aligned_cols=97 Identities=25% Similarity=0.363 Sum_probs=81.8
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS 294 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~ 294 (364)
....|+|+|++|+||++.+.+|.+||||++.+... ....+|+++++++||+||++|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 34568899999999999999999999999998421 2234567789999999999999997643 25689999999999
Q ss_pred CCCCceeEEEEeeccccccc
Q psy4890 295 VSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 295 iskDD~IGet~IdLenr~~s 314 (364)
+++|++||++.|+|.++..+
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~ 113 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLS 113 (124)
T ss_pred CCCCceeEEEEEecccccCC
Confidence 99999999999999988643
No 43
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=9.2e-16 Score=131.04 Aligned_cols=98 Identities=15% Similarity=0.271 Sum_probs=80.7
Q ss_pred ceeEEEEEEEEEecCCCCCCC-CCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDK-DGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK 290 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~-~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~ 290 (364)
+....|.|.|++|+||++.+. .|.+||||++.+.. ...+.+|+++++++||+|||+|.|.+... .+..|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 344558899999999999876 58999999999852 12234567889999999999999998643 3668999999
Q ss_pred ecCCCCCCceeEEEEeeccccccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLenr~~s 314 (364)
|+|.+++|++||++.|+|.+....
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCccccc
Confidence 999999999999999999887553
No 44
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.3e-15 Score=134.81 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=90.1
Q ss_pred EEEEEEEecCCCCCCCCC--------------CCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEE
Q psy4890 222 IRVYIVRAYGLHPKDKDG--------------KCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLT 286 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G--------------~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~ 286 (364)
+.|+|++|++|+++|..+ .+||||+|.+++++.+| +++.+++||+|||+|.|.+..| ....|.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT--~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKT--SVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeec--ceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 578999999999988654 68999999999887654 6689999999999999997655 366899
Q ss_pred EEEEecCCCCCCceeEEEEeeccccccccCCCccc-cccccccCCCCCceEEE
Q psy4890 287 VEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA-RWTSDLEVSGSSPGEVL 338 (364)
Q Consensus 287 V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~g-L~p~~y~~~G~~~GEIl 338 (364)
|+|||+|..++||+||++.|+|.++.......+.. +.|.|+.+-|..++...
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~~ 132 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYSL 132 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccccc
Confidence 99999999999999999999998765432222211 13566766666666543
No 45
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=1e-15 Score=129.48 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeee-cCCCCCccceEEEEEeecCC----CCeEEEEEEecCC
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYV-TNQINPYFGRHFEIQGSFPT----DAKLTVEIKDHDS 294 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i-~~tlnP~wne~Fef~v~~p~----~~~L~V~V~D~D~ 294 (364)
+|+|+|++|++|+..+..|.+||||++++++ ++.+| .++ .++.||.||+.|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T--~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQST--PVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCccccc--ccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 3789999999999999899999999999987 55544 344 46899999999999997653 6889999999999
Q ss_pred CCCCceeEEEEeeccccccccCCCcccccccccc---CCCCCceEEEE
Q psy4890 295 VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLE---VSGSSPGEVLP 339 (364)
Q Consensus 295 iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~---~~G~~~GEIll 339 (364)
+++|++||++.|+|.+......... .+++.+|. .+|..+|+|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~-~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAG-ELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCC-cceeEEEEeECCCCCcCeEEeC
Confidence 8899999999999998865422110 12233343 36788999864
No 46
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.64 E-value=9.4e-16 Score=131.40 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=83.7
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE----EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV----EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEI 289 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~----~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V 289 (364)
.+....|.|.|++|+||++.+..|.+||||++.+.+. ..+.+|.++.+++||+|||+|.|.+... .+..|.|+|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 4556678999999999999998999999999998532 2355677888999999999999997542 478999999
Q ss_pred EecCCCCCCceeEEEEeecccccc
Q psy4890 290 KDHDSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 290 ~D~D~iskDD~IGet~IdLenr~~ 313 (364)
||+|..+++++||++.|+|.+.-.
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccC
Confidence 999999999999999999998744
No 47
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.64 E-value=7e-15 Score=130.76 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=90.5
Q ss_pred eEEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEECCEEeeeeeeeecCCCCCc
Q psy4890 219 NVTIRVYIVRAYGLHPKD------------------------------KDGKCDPYIVLKTGSVEINDRENYVTNQINPY 268 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D------------------------------~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~ 268 (364)
...|+|+|++|++|+.+| ..|.+||||++++++.+. .+|+++.++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~-~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV-ARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe-eEEEEeCCCCCCc
Confidence 467889999999999887 356789999999987543 2446688999999
Q ss_pred cceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEE
Q psy4890 269 FGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 269 wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
|||.|.|.+..+ ...|.|.|||+|.++ +++||++.|+|.++..+. ...|..|... ........|+|++++.|
T Consensus 85 WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~-~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 85 WNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS-NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred cceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC-CCCCCCCCCEEEEEEEE
Confidence 999999998643 468999999999885 689999999998875321 1234444111 01111346899999988
No 48
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=1.9e-15 Score=125.76 Aligned_cols=91 Identities=19% Similarity=0.331 Sum_probs=79.9
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCC----CCeEEEEEEec
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT----DAKLTVEIKDH 292 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~----~~~L~V~V~D~ 292 (364)
|+.+.|+|+|++|++|+ +|.+||||++++++++.+| +++.+++||.||+.|.|.+..+. +..|.|+|||+
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT--~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYT--SVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeee--eEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 46788999999999998 5889999999999876654 56889999999999999986554 57899999999
Q ss_pred CCCCCCceeEEEEeecccccc
Q psy4890 293 DSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~ 313 (364)
+.+++|++||++.++|.+...
T Consensus 75 ~~~~~~~~iG~~~i~l~~v~~ 95 (111)
T cd04011 75 RSLRSDTLIGSFKLDVGTVYD 95 (111)
T ss_pred cccccCCccEEEEECCccccC
Confidence 999999999999999998754
No 49
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.64 E-value=1.7e-15 Score=126.15 Aligned_cols=90 Identities=27% Similarity=0.448 Sum_probs=78.7
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEECCEEeeeeeeeecCCCCCcc-ceEEEEEeecC--CCCeEEEEEEecCCCCC
Q psy4890 222 IRVYIVRAYGLHPKDK-DGKCDPYIVLKTGSVEINDRENYVTNQINPYF-GRHFEIQGSFP--TDAKLTVEIKDHDSVSK 297 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~-~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~w-ne~Fef~v~~p--~~~~L~V~V~D~D~isk 297 (364)
|+|+|++|++|++++. .|.+||||++.+++...+ |.++.+++||.| ||.|.|.+..+ .+..|.|+|||+|.+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~k--T~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYK--TDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEe--cceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence 4789999999999884 789999999999885554 466889999999 99999998654 35789999999999999
Q ss_pred CceeEEEEeecccccc
Q psy4890 298 DDYIGMTEMDLESRFY 313 (364)
Q Consensus 298 DD~IGet~IdLenr~~ 313 (364)
|++||++.++|.++..
T Consensus 79 ~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 79 NDAIGKVYIDLNPLLL 94 (110)
T ss_pred CCceEEEEEeHHHhcc
Confidence 9999999999998765
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=1.4e-15 Score=128.55 Aligned_cols=96 Identities=23% Similarity=0.324 Sum_probs=81.0
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS 294 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~ 294 (364)
....|+|+|++|+||++.+..|.+||||++.+.+ .....+|+++.+++||+||++|.|.+..+ ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 3446889999999999999999999999999853 22334567789999999999999998643 35689999999999
Q ss_pred CCCCceeEEEEeecccccc
Q psy4890 295 VSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 295 iskDD~IGet~IdLenr~~ 313 (364)
+++|++||++.++|.++..
T Consensus 94 ~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred CCCCceeEEEEEecCcccC
Confidence 9999999999999998644
No 51
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.63 E-value=2.4e-15 Score=124.01 Aligned_cols=87 Identities=21% Similarity=0.337 Sum_probs=78.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
|.|+|++|++|++.+..|.+||||+++++++..+| .++.++.||+||+.|.|.+..|....|.|+|||++. |++|
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~i 76 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKS--KVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSL 76 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeC--ccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCcc
Confidence 67999999999999989999999999999866655 567899999999999999988778899999999986 8999
Q ss_pred EEEEeecccccc
Q psy4890 302 GMTEMDLESRFY 313 (364)
Q Consensus 302 Get~IdLenr~~ 313 (364)
|++.|+|.++..
T Consensus 77 G~~~i~l~~l~~ 88 (105)
T cd04050 77 GSLTLPLSELLK 88 (105)
T ss_pred EEEEEEHHHhhc
Confidence 999999988764
No 52
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.62 E-value=2.3e-15 Score=129.11 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=79.1
Q ss_pred eeEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEE-eec--CCCCeEEEEEEec
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQ-GSF--PTDAKLTVEIKDH 292 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~-v~~--p~~~~L~V~V~D~ 292 (364)
....|+|+|++|+||++.+.. |.+||||++.+.+ ...+.||+++.+++||+|||+|.|. +.. .....|.++|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 445789999999999999886 9999999999853 2223356778999999999999994 431 2356799999999
Q ss_pred CCCCCCceeEEEEeecccccc
Q psy4890 293 DSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~ 313 (364)
|.+++|++||++.|+|.+...
T Consensus 94 d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 94 DRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred CCCCCCceeEEEEEeccccCC
Confidence 999999999999999987754
No 53
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.61 E-value=6.6e-15 Score=126.80 Aligned_cols=94 Identities=27% Similarity=0.352 Sum_probs=80.3
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEe-ecCCCCeEEEEEEecCC
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQG-SFPTDAKLTVEIKDHDS 294 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v-~~p~~~~L~V~V~D~D~ 294 (364)
..-...|+|+|++|++|+. +..|.+||||+|.++++.. +|.++.+++||+||+.|.|.. ..+....|.|+|||+|.
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~--kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEK--RTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccc--cCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 3445688999999999974 6778999999999987744 556789999999999999974 44567899999999999
Q ss_pred CCCCceeEEEEeeccccc
Q psy4890 295 VSKDDYIGMTEMDLESRF 312 (364)
Q Consensus 295 iskDD~IGet~IdLenr~ 312 (364)
+++||+||++.++|....
T Consensus 101 ~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeeEEEEEEecCCc
Confidence 999999999999998654
No 54
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=2.2e-15 Score=130.99 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=78.5
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD 291 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D 291 (364)
|....|.|.|++|+||++.|.+|.+||||++.+.+ ...+.+|.++++++||+|||+|.|.+... .+..|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 34446889999999999999999999999999842 22345677889999999999999997542 46789999999
Q ss_pred cCCCCCCceeEEEEeecc
Q psy4890 292 HDSVSKDDYIGMTEMDLE 309 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLe 309 (364)
+|.++++++||++.|...
T Consensus 92 ~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 92 STEDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCCCeeEEEEECCC
Confidence 999999999999999764
No 55
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=6.1e-15 Score=124.57 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=80.1
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeec---CCCCeEEEEEEecC
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSF---PTDAKLTVEIKDHD 293 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L~V~V~D~D 293 (364)
....|+|.|++|+||++.|.+|.+||||++.+.. .....+|.++++++||+||+.|.|.+.. .....|.++|||+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 3456889999999999999999999999999842 1223456778999999999999997531 23567999999999
Q ss_pred CCCCCceeEEEEeeccccccc
Q psy4890 294 SVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 294 ~iskDD~IGet~IdLenr~~s 314 (364)
..++|++||++.|+|.+...+
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~ 114 (125)
T cd08386 94 RFSRNDPIGEVSLPLNKVDLT 114 (125)
T ss_pred CCcCCcEeeEEEEecccccCC
Confidence 999999999999999987543
No 56
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.60 E-value=5.2e-15 Score=131.37 Aligned_cols=96 Identities=25% Similarity=0.413 Sum_probs=83.4
Q ss_pred CCCcceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE---------------------------eeeeeeeecCCC
Q psy4890 213 IDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE---------------------------INDRENYVTNQI 265 (364)
Q Consensus 213 p~~~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~---------------------------~~tkt~~i~~tl 265 (364)
+.+.|....|+|+|++|+||++.|.+|.+||||++.++... ...+|.++.+++
T Consensus 21 ~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 21 REAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred HhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 56678889999999999999999999999999999986321 124567789999
Q ss_pred CCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccc
Q psy4890 266 NPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRF 312 (364)
Q Consensus 266 nP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~ 312 (364)
||.||+.|.|.+..+....|.|+|||++ |++||++.++|.++.
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 9999999999997666789999999998 899999999998875
No 57
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=1.4e-14 Score=123.04 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=89.3
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCCCceeEE
Q psy4890 226 IVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGM 303 (364)
Q Consensus 226 Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~iskDD~IGe 303 (364)
|++|++|+. ..|.+||||++.+++.+.+ |.++.++.||+||+.|.|.+..+ ....|.|+|||++..++|++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~k--T~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKK--TRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeee--cceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence 789999998 6899999999999876554 46689999999999999998654 57889999999999999999999
Q ss_pred EEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890 304 TEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQSG 346 (364)
Q Consensus 304 t~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g 346 (364)
+.++|.++..+. ...+..|.. ......+|+|+++++|..-
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~---~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLD---SNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcC---CCCCcccEEEEEEEEEeCC
Confidence 999998876431 112333311 1122357999999999443
No 58
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.60 E-value=5.8e-15 Score=126.99 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=80.2
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-----EeeeeeeeecCCCCCccceEEEEEeecC----CCCeEEEEEE
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-----EINDRENYVTNQINPYFGRHFEIQGSFP----TDAKLTVEIK 290 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-----~~~tkt~~i~~tlnP~wne~Fef~v~~p----~~~~L~V~V~ 290 (364)
..|+|.|++|++|++.+.+|.+||||++.+.+. ....+|+++.+++||+|||.|.|.+... ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 457899999999999999999999999998632 2345677899999999999999998642 3568999999
Q ss_pred ecCCCCCCceeEEEEeeccccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLESRF 312 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLenr~ 312 (364)
|+|.+++|++||++.++|.++.
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCC
Confidence 9999999999999999998875
No 59
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.60 E-value=4.1e-15 Score=126.16 Aligned_cols=94 Identities=19% Similarity=0.365 Sum_probs=78.0
Q ss_pred eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCC
Q psy4890 219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDS 294 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~ 294 (364)
...|.|.|++|+||++.+ .|.+||||++.+.+. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||++.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 356889999999999998 899999999998642 2344667789999999999999998542 24578899999998
Q ss_pred CC-CCceeEEEEeecccccc
Q psy4890 295 VS-KDDYIGMTEMDLESRFY 313 (364)
Q Consensus 295 is-kDD~IGet~IdLenr~~ 313 (364)
.+ ++++||++.|+|.+...
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred CcCCCEEEEEEEecHHHhcc
Confidence 76 47999999999998753
No 60
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=1.1e-14 Score=128.12 Aligned_cols=89 Identities=31% Similarity=0.537 Sum_probs=80.0
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
..|+|.|++|++|+..+. +.+||||+++++++..+| +++.+++||+||+.|.|.+..+ ...|.|+|||+|.+++|+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT--~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKT--RVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEe--eeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 368999999999999887 899999999999877665 5688999999999999999766 778999999999999999
Q ss_pred eeEEEEeeccccc
Q psy4890 300 YIGMTEMDLESRF 312 (364)
Q Consensus 300 ~IGet~IdLenr~ 312 (364)
+||++.++|.++.
T Consensus 78 ~iG~a~i~l~~l~ 90 (145)
T cd04038 78 SMGEAEIDLEPLV 90 (145)
T ss_pred EEEEEEEEHHHhh
Confidence 9999999998764
No 61
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.59 E-value=7.4e-15 Score=123.55 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=81.2
Q ss_pred ceeEEEEEEEEEecCCCCCC-CCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890 217 KVNVTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH 292 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~ 292 (364)
+....++|+|++|+||++.+ ..|.+||||++.+.+ .....+|.++++++||+||+.|.|.+... ....|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 34456889999999999998 689999999999842 12233567889999999999999997543 246899999999
Q ss_pred CCCCCCceeEEEEeeccccccc
Q psy4890 293 DSVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~s 314 (364)
+..++|++||++.++|.++...
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred CcCCCCcEEEEEEEeccceecC
Confidence 9998999999999999987654
No 62
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.59 E-value=6.2e-15 Score=126.12 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=80.7
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK 290 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~ 290 (364)
.+....|.|+|++|+||++.|..|.+||||++.+.+ .....+|.++.+++||+||++|.|.+..+ ....|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 345567889999999999999999999999999853 22344667889999999999999998653 3568999999
Q ss_pred ecCCCCCCceeEEEEeeccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLen 310 (364)
|+|..++|++||++.+++..
T Consensus 89 d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred eCCCCCCccEEEEEEEecCC
Confidence 99999999999999999974
No 63
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.59 E-value=5e-15 Score=126.25 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=79.7
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CEEeeeeeeeecCCCCCccceEEEEE-eec--CCCCeEEEEEEec
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG-SVEINDRENYVTNQINPYFGRHFEIQ-GSF--PTDAKLTVEIKDH 292 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg-~~~~~tkt~~i~~tlnP~wne~Fef~-v~~--p~~~~L~V~V~D~ 292 (364)
+....|+|+|++|+||++.+.+|.+||||++.+. ....+.+|+++.+ +||+|||+|.|. +.. ..+..|.++|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 3445678999999999999999999999998764 3334445666666 999999999998 542 2477899999999
Q ss_pred CCCCCCceeEEEEeeccccccc
Q psy4890 293 DSVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~s 314 (364)
|.++++++||++.|+|.++...
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred CCcccCceEEEEEEeccccCCC
Confidence 9999999999999999988543
No 64
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.59 E-value=6.1e-15 Score=123.89 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=80.4
Q ss_pred ceeEEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890 217 KVNVTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK 290 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~ 290 (364)
+....|+|+|++|+||++.+ ..|.+||||++.+.+. ....+|+++.+++||+||++|.|.+... ....|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34456889999999999998 7889999999988421 1234567789999999999999987532 2568999999
Q ss_pred ecCCCCCCceeEEEEeecccccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLenr~~ 313 (364)
|++.++++++||++.++|.++..
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred eCCCCcCCceeeEEEEecccccc
Confidence 99999999999999999998754
No 65
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.4e-14 Score=120.53 Aligned_cols=112 Identities=24% Similarity=0.360 Sum_probs=87.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
++|.|++|++|+..+..|.+||||++.+.+... .+|..+.++.||.||++|.|.+.......+.|+|||++..++|++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~-~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV-FKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcc-eeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 478899999999999889999999999965332 3456688999999999999998766678899999999999999999
Q ss_pred EEEEeecccccccc-CCCccccccccccCCCCCceEEE
Q psy4890 302 GMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVL 338 (364)
Q Consensus 302 Get~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIl 338 (364)
|++.+++.++..+. ...+..|.+ .++...|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~----~g~~~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDG----QGGGKLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcC----CCCccCceEE
Confidence 99999998875431 122343421 2345566654
No 66
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.9e-14 Score=122.05 Aligned_cols=92 Identities=25% Similarity=0.465 Sum_probs=80.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
+|+|+|++|++|++.+..|.+||||++.+++. ...+|.++.++.||.||+.|.|.+..+ ...|.|+|||++..++|++
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI-VKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCE-EeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57899999999999999999999999999764 234456689999999999999988644 5689999999999999999
Q ss_pred eEEEEeeccccccc
Q psy4890 301 IGMTEMDLESRFYS 314 (364)
Q Consensus 301 IGet~IdLenr~~s 314 (364)
||++.++|.++.-.
T Consensus 80 IG~~~~~l~~l~~~ 93 (120)
T cd04045 80 LGSVEINVSDLIKK 93 (120)
T ss_pred eeEEEEeHHHhhCC
Confidence 99999999987643
No 67
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.58 E-value=9.7e-15 Score=123.50 Aligned_cols=96 Identities=22% Similarity=0.317 Sum_probs=80.6
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH 292 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~ 292 (364)
....|+|+|++|+||++.+..+.+||||++.+.+. ....+|+++.+++||+||+.|.|.+... ....|.|.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 34557899999999999999999999999998531 3344667889999999999999998542 357899999999
Q ss_pred CCC--CCCceeEEEEeecccccc
Q psy4890 293 DSV--SKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 293 D~i--skDD~IGet~IdLenr~~ 313 (364)
+.+ ++|++||++.|+|.++..
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDL 116 (127)
T ss_pred CcccCCCCceEEEEEEecccccc
Confidence 975 789999999999998744
No 68
>KOG1028|consensus
Probab=99.58 E-value=8.8e-15 Score=148.93 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=100.9
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH 292 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~ 292 (364)
......+.|+|++|.+|++.|..|.+||||++++... +.+.+|++.++++||+|||+|.|.+... ....|.++|||+
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF 242 (421)
T ss_pred cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence 3455677899999999999997788999999999753 3566778899999999999999996542 478999999999
Q ss_pred CCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEee
Q psy4890 293 DSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQS 345 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~ 345 (364)
|++++||+||++.++|....... ..-|..+.+......+ ..|||+++|||..
T Consensus 243 drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~-~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE-LAGELLLSLCYLP 295 (421)
T ss_pred CCcccccEEEEEEecCccccccccceeeeccccccCCccc-ccceEEEEEEeec
Confidence 99999999999999988765432 1235555443222222 2389999999943
No 69
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.57 E-value=8.5e-15 Score=126.02 Aligned_cols=93 Identities=24% Similarity=0.406 Sum_probs=77.9
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--E-EeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEec
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--V-EINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDH 292 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~ 292 (364)
....|+|.|++|++|++.|..|.+||||++.++. + ....+|.++.+++||.||+.|.|.+..+. ...|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 3456889999999999999999999999999842 2 23345667899999999999999985432 35799999999
Q ss_pred CCCCCCceeEEEEeeccc
Q psy4890 293 DSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 293 D~iskDD~IGet~IdLen 310 (364)
|.+++|++||++.|++..
T Consensus 93 ~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCCceeEEEEECCcc
Confidence 999999999999999864
No 70
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.57 E-value=7.4e-15 Score=128.22 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=78.1
Q ss_pred ceeEEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEE
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDK--DGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEI 289 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V 289 (364)
|....|.|.|++|+||++.|. .+.+||||++++.. +..+.+|.++.+++||+|||+|.|.++.. .+..|.|+|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 445568899999999999984 35599999999864 22344677889999999999999998642 267899999
Q ss_pred EecCCCCCCceeEEEEeeccc
Q psy4890 290 KDHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 290 ~D~D~iskDD~IGet~IdLen 310 (364)
||+|.+++||+||++.+.+..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCcCcceeceEEecCcC
Confidence 999999999999999999864
No 71
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.57 E-value=1.9e-14 Score=125.03 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=83.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC--EEeeeeeeeecCCCCCccceEEEEEeecC---------------CCCe
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VEINDRENYVTNQINPYFGRHFEIQGSFP---------------TDAK 284 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~~~tkt~~i~~tlnP~wne~Fef~v~~p---------------~~~~ 284 (364)
|+|+|++|++|+.+ ..|.+||||++.++. .....+|.+++++.||.||+.|.|.+..+ ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 46899999999998 789999999999872 12234556788999999999999998765 4678
Q ss_pred EEEEEEecCCCCCCceeEEEEeeccccccc-cCCCccccccc
Q psy4890 285 LTVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCARWTS 325 (364)
Q Consensus 285 L~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL~p~ 325 (364)
|.|+|||++..+++++||++.|+|.++... ....|+.|.+.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999998999999999999987543 33456666443
No 72
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.56 E-value=1.5e-14 Score=124.63 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=78.3
Q ss_pred eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--EE-eeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecC
Q psy4890 219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VE-INDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHD 293 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~-~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D 293 (364)
...|.|+|++|++|++.|.+|.+||||++.+.. +. ...+|.++++++||.|+++|.|.+... ....|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 345789999999999999999999999999842 22 345667889999999999999997532 3567899999999
Q ss_pred CCCCCceeEEEEeeccc
Q psy4890 294 SVSKDDYIGMTEMDLES 310 (364)
Q Consensus 294 ~iskDD~IGet~IdLen 310 (364)
.+++|++||++.+++..
T Consensus 94 ~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCccEEEEEECCcC
Confidence 99999999999999987
No 73
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.56 E-value=3.6e-14 Score=122.24 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=71.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
.|.|+|++|++|+..+ ..||||+|++++++.+| .+..+ .||.||+.|.|.+..+... |.|+|||+|.+ .||+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT--~v~~~-~nP~WnE~F~F~~~~~~~~-L~v~V~dkd~~-~DD~ 74 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTT--IAVRG-SQPCWEQDFMFEINRLDLG-LVIELWNKGLI-WDTL 74 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEe--eECCC-CCCceeeEEEEEEcCCCCE-EEEEEEeCCCc-CCCc
Confidence 4779999999997654 46999999999876655 44555 5999999999999754444 99999999976 8999
Q ss_pred eEEEEeeccccccc
Q psy4890 301 IGMTEMDLESRFYS 314 (364)
Q Consensus 301 IGet~IdLenr~~s 314 (364)
||++.|+|.+.+.+
T Consensus 75 lG~v~i~L~~v~~~ 88 (127)
T cd08394 75 VGTVWIPLSTIRQS 88 (127)
T ss_pred eEEEEEEhHHcccC
Confidence 99999999988754
No 74
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=2.1e-14 Score=123.29 Aligned_cols=93 Identities=18% Similarity=0.314 Sum_probs=77.9
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD 291 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D 291 (364)
+....|+|+|++|++|++.|..|.+||||++.+.. .....+|.++.+++||.|++.|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 34556899999999999999999999999999842 22344566788999999999999987532 23569999999
Q ss_pred cCCCCCCceeEEEEeecc
Q psy4890 292 HDSVSKDDYIGMTEMDLE 309 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLe 309 (364)
+|.+++|++||++.|++.
T Consensus 91 ~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 91 YDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCCCceeEEEEECCC
Confidence 999999999999999876
No 75
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=2.6e-14 Score=122.94 Aligned_cols=94 Identities=23% Similarity=0.380 Sum_probs=78.8
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--S-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH 292 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~ 292 (364)
....|+|+|++|+||++.+.+|.+||||++.+. + .....+|.++.+++||.||++|.|.+... .+..|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 345578999999999999999999999999983 2 22344667889999999999999987532 356899999999
Q ss_pred CCCCCCceeEEEEeecccc
Q psy4890 293 DSVSKDDYIGMTEMDLESR 311 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr 311 (364)
|.+++|++||++.|++...
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9999999999999998764
No 76
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.54 E-value=2.8e-14 Score=127.51 Aligned_cols=95 Identities=21% Similarity=0.377 Sum_probs=80.0
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEe
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKD 291 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D 291 (364)
....|+|+|++|+||++.+..|.+||||++.+.. .....+|+++.+++||+||+.|.|.+..+ .+..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 4567899999999999999999999999998742 22344667889999999999999985322 35689999999
Q ss_pred cCCCCCCceeEEEEeeccccc
Q psy4890 292 HDSVSKDDYIGMTEMDLESRF 312 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLenr~ 312 (364)
+|.+++|++||++.+++....
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred CCCCCCCceEEEEEEeCCccc
Confidence 999999999999999998754
No 77
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.54 E-value=3.3e-14 Score=119.83 Aligned_cols=88 Identities=28% Similarity=0.391 Sum_probs=77.2
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEECCEE-----eeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC----CC
Q psy4890 226 IVRAYGLHPKDKDGKCDPYIVLKTGSVE-----INDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS----VS 296 (364)
Q Consensus 226 Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~-----~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~----is 296 (364)
.++|++|++.+..|.+||||++.+.+.. ...+|.++.+++||+|++.|.|.+..+....|.|+|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 5899999999999999999999986542 34567889999999999999998766677889999999997 88
Q ss_pred CCceeEEEEeecccccc
Q psy4890 297 KDDYIGMTEMDLESRFY 313 (364)
Q Consensus 297 kDD~IGet~IdLenr~~ 313 (364)
+|++||++.+++.++..
T Consensus 86 ~~d~iG~~~i~l~~l~~ 102 (120)
T cd04048 86 DHDFLGEAECTLGEIVS 102 (120)
T ss_pred CCcEEEEEEEEHHHHhc
Confidence 99999999999998863
No 78
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.54 E-value=4.9e-14 Score=122.68 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=80.3
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EE-eeeeeeeecCCCCCccceEEEEEeec--CCCCeEEEEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VE-INDRENYVTNQINPYFGRHFEIQGSF--PTDAKLTVEI 289 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~-~~tkt~~i~~tlnP~wne~Fef~v~~--p~~~~L~V~V 289 (364)
.+....|.|+|++|+||++.+..|.+||||++.+.+ +. .+.+|+++.+++||+|||+|.|.++. ..+..|.|+|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 445566889999999999999999999999999842 11 24467888999999999999999864 3467999999
Q ss_pred EecCCCCCCceeEEEEeeccc
Q psy4890 290 KDHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 290 ~D~D~iskDD~IGet~IdLen 310 (364)
||+|.++++++||++.+++..
T Consensus 91 ~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 91 YNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred EECCCCCCCcEEEEEEECCcC
Confidence 999999999999999998764
No 79
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=1.3e-13 Score=117.62 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=75.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
.|+|+|++|+ |.+.+..+.+||||++.++++ ...+|.++.+++||.||+.|.|.+. ....|.|+|||++..++|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~-~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ-PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc-ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCcE
Confidence 4789999998 666666889999999999876 2334566889999999999999974 46789999999999999999
Q ss_pred eEEEEeecccccc
Q psy4890 301 IGMTEMDLESRFY 313 (364)
Q Consensus 301 IGet~IdLenr~~ 313 (364)
||++.++|.++..
T Consensus 79 iG~~~i~l~~l~~ 91 (125)
T cd04021 79 LGEASLDLSDILK 91 (125)
T ss_pred EEEEEEEHHHhHh
Confidence 9999999988764
No 80
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=9.6e-14 Score=115.81 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccccccC
Q psy4890 237 KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRH 316 (364)
Q Consensus 237 ~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~ 316 (364)
.+|.+||||++.++++.. .+|.++.++.||+||+.|.|.+..+....|.|.|||++.+ +|++||++.++|.++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~-~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLV-YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEE-EEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence 478999999999987532 2345578899999999999999766778899999999999 99999999999998754211
Q ss_pred CCccccccccccCCCCCceEEEEEEEEee
Q psy4890 317 RGSCARWTSDLEVSGSSPGEVLPGITLQS 345 (364)
Q Consensus 317 ~a~~gL~p~~y~~~G~~~GEIllSL~fq~ 345 (364)
. . ..++.+.+..+|+|+++++|.+
T Consensus 87 ~----~-~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 87 V----G-QQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred c----c-ceeEECCCCCCCEEEEEEEEec
Confidence 1 1 2344445567899999999853
No 81
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.53 E-value=1.4e-13 Score=114.54 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=83.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCCCc
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~iskDD 299 (364)
|+|.|++|+||+.. |.+||||++.++++.. .+|+.+.+ .||.||+.|.|.+... ....|.|.+||.+..++|.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~-~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV-ARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEe-EecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 57899999999986 8899999999987542 23455677 9999999999998643 2356888889988777777
Q ss_pred eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
.+|.+.|+.... ......|+.|+|... .+...|+|++.+.|
T Consensus 77 ~~g~v~l~~~~~-~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALSKLDL-GQGKDEWFPLTPVDP--DSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecCcCC-CCcceeEEECccCCC--CCCcCceEEEEEEC
Confidence 888776655433 113345666644322 34578999999986
No 82
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.52 E-value=8.1e-14 Score=118.93 Aligned_cols=94 Identities=23% Similarity=0.435 Sum_probs=80.4
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCCC
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDSV 295 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~i 295 (364)
..|+|+|++|++|+..+..|.+||||++.+.+ .....+|.++.++.||.||++|.|.+..+ ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 56789999999999999899999999999853 22344567789999999999999998644 357899999999999
Q ss_pred CCCceeEEEEeecccccc
Q psy4890 296 SKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 296 skDD~IGet~IdLenr~~ 313 (364)
++|++||++.++|.++.-
T Consensus 93 ~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 93 TRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCcceeEEEEEeHHHhCc
Confidence 999999999999988753
No 83
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.52 E-value=4.5e-14 Score=121.93 Aligned_cols=92 Identities=18% Similarity=0.334 Sum_probs=75.7
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CEE-eeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--SVE-INDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD 291 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~~~-~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D 291 (364)
|....|+|.|++|++|++.|.+|.+||||++.+. .+. ...+|.++++++||+||+.|.|.+... .+..|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 3445689999999999999999999999999973 221 234567789999999999999998532 24579999999
Q ss_pred cCCCCCCceeEEEEeec
Q psy4890 292 HDSVSKDDYIGMTEMDL 308 (364)
Q Consensus 292 ~D~iskDD~IGet~IdL 308 (364)
+|..++|++||++.|..
T Consensus 91 ~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCCCcEEEEEEEcC
Confidence 99999999999998764
No 84
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=2.6e-13 Score=115.52 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=71.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEec------
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDH------ 292 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~------ 292 (364)
|.|.|.+|+||+ |.+||||++.+.+. ....+|+++.+|+||+|||.|+|.+. ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 468999999995 56899999988531 33456678999999999999999985 577999999998
Q ss_pred -CCCCCCceeEEEEeecccccc
Q psy4890 293 -DSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 293 -D~iskDD~IGet~IdLenr~~ 313 (364)
|..++|++||.+.|.|+...+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~ 95 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSL 95 (118)
T ss_pred ccccCcccEEEEEEEEECHHHh
Confidence 577899999999999986554
No 85
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.50 E-value=3.6e-13 Score=113.54 Aligned_cols=117 Identities=23% Similarity=0.321 Sum_probs=89.2
Q ss_pred EEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC----EEeeeeeeeecCCC-CCccceEEEEEeecCCCCeEEEEEEec
Q psy4890 220 VTIRVYIVRAYGLHPKD--KDGKCDPYIVLKTGS----VEINDRENYVTNQI-NPYFGRHFEIQGSFPTDAKLTVEIKDH 292 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D--~~G~sDPYV~I~Lg~----~~~~tkt~~i~~tl-nP~wne~Fef~v~~p~~~~L~V~V~D~ 292 (364)
..|+|+|++|++|++.+ ..+.+||||++++.. .....+|.++.++. ||.||+.|.|.+..+....|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 35789999999999988 578999999999842 12333445566665 999999999998877767899999999
Q ss_pred CCCCCCceeEEEEeeccccccccCCCccccccccccCCC--CCceEEEEEEEE
Q psy4890 293 DSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSG--SSPGEVLPGITL 343 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G--~~~GEIllSL~f 343 (364)
+.. +|++||++.++|.++.- . ..+..| ....| ...|.|.+.+.+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~-g-~~~~~l----~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ-G-YRHVPL----LDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC-c-eEEEEe----cCCCCCCCcceeEEEEEEE
Confidence 988 99999999999987632 1 122333 22233 567899988875
No 86
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=1.3e-13 Score=120.00 Aligned_cols=95 Identities=13% Similarity=0.194 Sum_probs=78.8
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCC-CCccceEEEEEeecCC-CCeEEEEEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQI-NPYFGRHFEIQGSFPT-DAKLTVEIK 290 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tl-nP~wne~Fef~v~~p~-~~~L~V~V~ 290 (364)
.|....|.|.|++|+||++.+..+..||||++++. +...+.||.++.+|+ ||+|||.|.|.+..+. +..|.|+||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 56777899999999999998667778999999873 233455677888986 6999999999997543 457889999
Q ss_pred ecCCCCCCceeEEEEeeccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLen 310 (364)
|+|..+++|+||++.+....
T Consensus 90 d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred eCCCCcCCceEEEEEECCcc
Confidence 99999999999999999864
No 87
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.49 E-value=4.8e-13 Score=119.05 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=87.1
Q ss_pred EEEEEEecC--CCCCCCCCCCCcEEEEEE--C-CEEeeeeeeeecCCCCCccceEEEEEeecCC--------CCeEEEEE
Q psy4890 223 RVYIVRAYG--LHPKDKDGKCDPYIVLKT--G-SVEINDRENYVTNQINPYFGRHFEIQGSFPT--------DAKLTVEI 289 (364)
Q Consensus 223 rV~Vv~A~d--L~p~D~~G~sDPYV~I~L--g-~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--------~~~L~V~V 289 (364)
.++|.+|.+ |++.+.++.+||||++.+ . ....+.||+++.+|+||+|||.|.|.+.... ...|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 355666666 788888899999999987 2 3334556678999999999999999985432 45799999
Q ss_pred EecCCC-CCCceeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEee
Q psy4890 290 KDHDSV-SKDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQS 345 (364)
Q Consensus 290 ~D~D~i-skDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~ 345 (364)
||++.+ ++|++||++.++|+..... ....++.| ..-..+..|+|.+.+....
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L----~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDL----MDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEh----hhCCCCcCCEEEEEEEecC
Confidence 999986 5799999999999876432 11122322 1123366799999998844
No 88
>KOG0696|consensus
Probab=99.49 E-value=2e-14 Score=143.61 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=87.1
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeec-CCCCeEEEEEEecC
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSF-PTDAKLTVEIKDHD 293 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~-p~~~~L~V~V~D~D 293 (364)
..-.|.|.|..|+||.|+|.||.+||||++++.. ...+.+|+.++.++||+|||+|.|.+.. ..++.|.|+|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 4456789999999999999999999999999853 2334456679999999999999999862 23778999999999
Q ss_pred CCCCCceeEEEEeeccccccccCCCcccc
Q psy4890 294 SVSKDDYIGMTEMDLESRFYSRHRGSCAR 322 (364)
Q Consensus 294 ~iskDD~IGet~IdLenr~~s~~~a~~gL 322 (364)
+-+++||+|...+.++++.-....+|..|
T Consensus 258 rTsRNDFMGslSFgisEl~K~p~~GWyKl 286 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAPVDGWYKL 286 (683)
T ss_pred ccccccccceecccHHHHhhcchhhHHHH
Confidence 99999999999999988765545556655
No 89
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.48 E-value=2.3e-13 Score=112.59 Aligned_cols=87 Identities=29% Similarity=0.381 Sum_probs=73.4
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEECCE----EeeeeeeeecCCCCCccceEEEEEeec----CCCCeEEEEEEecCCCC
Q psy4890 225 YIVRAYGLHPKDKDGKCDPYIVLKTGSV----EINDRENYVTNQINPYFGRHFEIQGSF----PTDAKLTVEIKDHDSVS 296 (364)
Q Consensus 225 ~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~----~~~tkt~~i~~tlnP~wne~Fef~v~~----p~~~~L~V~V~D~D~is 296 (364)
-.++|++|++.|..|.+|||+++.+.+. ....+|.++.+++||+|| .|.|.+.. .....|.|+|||+|..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 3679999999999999999999987532 345677889999999999 68877532 12679999999999999
Q ss_pred CCceeEEEEeeccccc
Q psy4890 297 KDDYIGMTEMDLESRF 312 (364)
Q Consensus 297 kDD~IGet~IdLenr~ 312 (364)
+|++||++.++|.++.
T Consensus 84 ~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 84 KHDLIGEFETTLDELL 99 (110)
T ss_pred CCcEEEEEEEEHHHHh
Confidence 9999999999999876
No 90
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.47 E-value=7.2e-13 Score=115.55 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=84.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-E----------EeeeeeeeecCCCCCcc-ceEEEEEeecCCCCeEEEE
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-V----------EINDRENYVTNQINPYF-GRHFEIQGSFPTDAKLTVE 288 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~----------~~~tkt~~i~~tlnP~w-ne~Fef~v~~p~~~~L~V~ 288 (364)
...|.+++|+||+ ++..|++|||+++.+.. . ....+|.++.+++||+| |+.|.|.+. ....|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4578899999998 77889999999999853 1 12456788999999999 999999984 45689999
Q ss_pred EEecCCCCC---CceeEEEEeeccccccccCCCccccccccccC-----CCCCceEEEEEE
Q psy4890 289 IKDHDSVSK---DDYIGMTEMDLESRFYSRHRGSCARWTSDLEV-----SGSSPGEVLPGI 341 (364)
Q Consensus 289 V~D~D~isk---DD~IGet~IdLenr~~s~~~a~~gL~p~~y~~-----~G~~~GEIllSL 341 (364)
|||++..++ |++||++.|+|.++.-...... ..++|.+ .+.-+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~---~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGD---QELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCc---eEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875443 7999999999998754311111 1222222 234578887764
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=2.5e-13 Score=115.35 Aligned_cols=92 Identities=23% Similarity=0.411 Sum_probs=78.9
Q ss_pred eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEecC
Q psy4890 219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHD 293 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D 293 (364)
...|.|+|++|+||++.+..+.+||||++.+.+. ....+|.++.++.||.||++|.|.+..+. ...|.|+|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 3468899999999999998999999999998542 23345677889999999999999986543 678999999999
Q ss_pred CCCCCceeEEEEeeccc
Q psy4890 294 SVSKDDYIGMTEMDLES 310 (364)
Q Consensus 294 ~iskDD~IGet~IdLen 310 (364)
..+++++||++.|+|.+
T Consensus 93 ~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCceeEEEEECCCC
Confidence 98899999999999987
No 92
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.46 E-value=3.3e-13 Score=113.94 Aligned_cols=97 Identities=26% Similarity=0.384 Sum_probs=79.4
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEI 289 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V 289 (364)
.+....|+|.|++|++|++.+..+.+||||++.+.+ .....+|+++++++||.||+.|.|....+ ....|.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 344567899999999999999889999999998732 22345667789999999999999963322 256899999
Q ss_pred EecCCCCCCceeEEEEeecccccc
Q psy4890 290 KDHDSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 290 ~D~D~iskDD~IGet~IdLenr~~ 313 (364)
||++.. +|++||++.++|.++..
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCC
Confidence 999988 89999999999987753
No 93
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.46 E-value=2.9e-13 Score=117.42 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=76.3
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--EE-eeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VE-INDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD 291 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~-~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D 291 (364)
|....|.|.|++|+||++.+ .+.+||||++.+.. +. .+.+|+++.+++||+|||.|.|.++.. ....|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 34566889999999999999 88899999999753 22 234667788999999999999998532 34789999999
Q ss_pred cCCCCCCceeEEEEeecc
Q psy4890 292 HDSVSKDDYIGMTEMDLE 309 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLe 309 (364)
++..++|++||++.|...
T Consensus 91 ~~~~~~~~~lG~v~ig~~ 108 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPF 108 (137)
T ss_pred CCCCCCcceEEEEEECCc
Confidence 999999999999999854
No 94
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.41 E-value=1.2e-12 Score=101.18 Aligned_cols=84 Identities=31% Similarity=0.452 Sum_probs=73.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
|+|+|++|+||+..+..+..|||+++.+++. ....+|..++++.+|.|++.|.|.+..+....|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 6799999999999998999999999999752 223345678999999999999999887777779999999999999999
Q ss_pred eEEEE
Q psy4890 301 IGMTE 305 (364)
Q Consensus 301 IGet~ 305 (364)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 95
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.38 E-value=3.1e-12 Score=111.13 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=78.9
Q ss_pred EEEEEEEecCCCCCC--CCCC--CCcEEEEEECCE-EeeeeeeeecCCCC--CccceEEEEEeecC--------------
Q psy4890 222 IRVYIVRAYGLHPKD--KDGK--CDPYIVLKTGSV-EINDRENYVTNQIN--PYFGRHFEIQGSFP-------------- 280 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D--~~G~--sDPYV~I~Lg~~-~~~tkt~~i~~tln--P~wne~Fef~v~~p-------------- 280 (364)
|||.|.+|+|++..+ ..|. +||||++.+.+. ..+.+|.++.+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 3674 999999998653 44445566778888 99999999987652
Q ss_pred ---------CCCeEEEEEEecCCCCCCceeEEEEeeccccccc-cCCCcccc
Q psy4890 281 ---------TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCAR 322 (364)
Q Consensus 281 ---------~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL 322 (364)
....|.|+|||.|.+++||+||++.++|.....+ +....|||
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~~~~c~l 133 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKTSKKCGL 133 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccccccCCC
Confidence 2578999999999999999999999999977654 23344553
No 96
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.37 E-value=2e-11 Score=107.75 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC-CC
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS-VS 296 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~-is 296 (364)
..-.|+|.|++|++|++++ +|||.|.+++... .||.++.++.||.|+|.|+|.+. +.-..|.|.||+.+. .+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v-aRT~v~~~~~nP~W~E~F~f~~~-~~~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY-ARTTSKLKTDTLFWGEHFEFSNL-PPVSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE-EEEEEEcCCCCCcceeeEEecCC-CcccEEEEEEEEccCccc
Confidence 3456789999999999876 7999999998754 24567889999999999999875 345779999986543 22
Q ss_pred ---CCceeEEEEeeccccccc-cCCCccccccccccC-----C-CCCceEEEEEEEEeecc
Q psy4890 297 ---KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEV-----S-GSSPGEVLPGITLQSGE 347 (364)
Q Consensus 297 ---kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~-----~-G~~~GEIllSL~fq~g~ 347 (364)
+|++||.+.|+++++... ....|+.|.+..-.. + -...+.|++++.|+...
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 689999999999987632 223456553221110 0 13457999999998764
No 97
>PLN03008 Phospholipase D delta
Probab=99.34 E-value=7.4e-12 Score=134.58 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=78.4
Q ss_pred CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccccccc-C
Q psy4890 238 DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSR-H 316 (364)
Q Consensus 238 ~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~-~ 316 (364)
.+.+||||+|.+++++.. ||+++.+++||+|||.|.|.|..+ ...|.++|||+|.++ +|+||++.|+|+++.... .
T Consensus 74 ~~tSDPYV~I~Lg~~rv~-RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v 150 (868)
T PLN03008 74 VITSDPYVTVVVPQATLA-RTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI 150 (868)
T ss_pred cCCCCceEEEEECCccee-eEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce
Confidence 467899999999875432 556789999999999999999865 468999999999996 689999999999875532 2
Q ss_pred CCccccccccccCCCCCceEEEEEEEEeec
Q psy4890 317 RGSCARWTSDLEVSGSSPGEVLPGITLQSG 346 (364)
Q Consensus 317 ~a~~gL~p~~y~~~G~~~GEIllSL~fq~g 346 (364)
..|..| -......-...|+|+++|+|..-
T Consensus 151 d~Wl~L-l~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 151 SGWFPV-LGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred EEEEEc-cccCCCCCCCCcEEEEEEEEEEc
Confidence 234434 11111112346899999999443
No 98
>PLN02223 phosphoinositide phospholipase C
Probab=99.22 E-value=6.7e-11 Score=122.59 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=109.3
Q ss_pred eeeecCCCCcC--CcccCC--------------CccccccccccccccccCCCCCccccceeeEE-EeeEEEeecCCCCC
Q psy4890 134 CNIVPPKNELE--LVPEFE--------------HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSF-KGNVMFYPADRDHL 196 (364)
Q Consensus 134 ~~lkvy~~eLE--~~~~F~--------------~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~f-Kg~f~iyp~p~~~~ 196 (364)
.-++||+.-+- ....|+ |||.+...+.|.+|++..++. .|.+ |..|..-+.++ .
T Consensus 327 ~l~RiYPkG~R~~dSSNYnP~~~W~~GcQmVALN~QT~d~~M~LN~G~F~~NG~-------CGYVLKP~~Lr~~~~~--~ 397 (537)
T PLN02223 327 KFLRTRPKKKNLLINAPYKPQRAWMHGAQLIALSRKDDKEKLWLMQGMFRANGG-------CGYVKKPDFLLNAGPS--G 397 (537)
T ss_pred ceEEECCCCCccccCCCCCChhhcccceeEeeeccCCCChhHHhhcchhccCCC-------CCceECChhhccCCcc--c
Confidence 35788887763 344554 677778888899999988762 3433 22221111010 0
Q ss_pred CCCCCCccccccccccCC-CcceeEEEEEEEEEecCCCCC-----CCCCCCCcEEEEEECCE---EeeeeeeeecCCCCC
Q psy4890 197 VTFSGKPLSNGALQESID-NEKVNVTIRVYIVRAYGLHPK-----DKDGKCDPYIVLKTGSV---EINDRENYVTNQINP 267 (364)
Q Consensus 197 ~~~~~~~~~~~l~~~yp~-~~p~~~~LrV~Vv~A~dL~p~-----D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP 267 (364)
... |. +.+....|.|.|+.|+++++. +.....||||+|.+.+. ....+|.+..++.||
T Consensus 398 ~Fd-------------P~~~~~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nP 464 (537)
T PLN02223 398 VFY-------------PTENPVVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKP 464 (537)
T ss_pred ccC-------------CCCCcccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCc
Confidence 111 11 122345688999999998521 22345799999998531 112234567889999
Q ss_pred ccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccccc
Q psy4890 268 YFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 268 ~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~ 313 (364)
+||+.|+|.+..|+-..|.|.|+|+|..++|++||++.+|+..+..
T Consensus 465 vWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 465 TWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIE 510 (537)
T ss_pred eecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence 9999999999999999999999999998899999999999988753
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.22 E-value=2.9e-11 Score=140.10 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=90.8
Q ss_pred eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCC-CCeEEEEEEecCCCC
Q psy4890 219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPT-DAKLTVEIKDHDSVS 296 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~-~~~L~V~V~D~D~is 296 (364)
...|+|+|++|+||. +..|.+||||++.+|++ +. ||++++++.||+||+.|.|.+..|. +..|+|+|||+|.++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~--kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPR--QTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcc--cccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 467899999999998 45799999999999965 44 4467999999999999999988765 456999999999995
Q ss_pred CCceeEEEEeeccccccc-cCCCccccccccccCCCCCceE---EEEEEEE
Q psy4890 297 KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGE---VLPGITL 343 (364)
Q Consensus 297 kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GE---IllSL~f 343 (364)
+ |.||.+.|+|.+.... +...++.|. -+|...|. |.+.+..
T Consensus 2055 k-d~~G~~~i~l~~vv~~~~~~~~~~L~-----~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2055 K-SSLGKVTIQIDRVVMEGTYSGEYSLN-----PESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred C-CCCceEEEEHHHHhcCceeeeeeecC-----cccccCCCcceEEEEEEe
Confidence 4 5999999999988744 445566552 13445677 7776643
No 100
>KOG1011|consensus
Probab=99.17 E-value=6.3e-11 Score=122.90 Aligned_cols=119 Identities=24% Similarity=0.435 Sum_probs=89.6
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC--
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV-- 295 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i-- 295 (364)
....++++|+.|+||..+|..|++||||.+++|+.+.++++ +...+||+||+.|.|+|. .....++|.|||.|.-
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrt--i~~~lnpvw~ekfhfech-nstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRT--IHQELNPVWNEKFHFECH-NSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHh--hhhccchhhhhheeeeec-CCCceeEEEEecCcccHH
Confidence 34567899999999999999999999999999988777754 889999999999999998 4556789999998752
Q ss_pred ---------CCCceeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 296 ---------SKDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 296 ---------skDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
..|||+|++.|.+.. +| .-.-|..| ...-+.+ .-.|-|++.|..
T Consensus 370 sklrqkl~resddflgqtvievrt--lsgemdvwynl-ekrtdks-avsgairlhisv 423 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRT--LSGEMDVWYNL-EKRTDKS-AVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEe--cccchhhhcch-hhccchh-hccceEEEEEEE
Confidence 469999999997643 33 22234444 2111111 245777776666
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.16 E-value=4.4e-10 Score=88.08 Aligned_cols=92 Identities=32% Similarity=0.546 Sum_probs=76.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
++|.|++|++|......+..+|||++.+... ....+|..+.++.||.|++.|.|.+..+....|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 5789999999998876678999999999764 122344567888899999999999976668899999999998888999
Q ss_pred eEEEEeecccccc
Q psy4890 301 IGMTEMDLESRFY 313 (364)
Q Consensus 301 IGet~IdLenr~~ 313 (364)
+|.+.++|.+...
T Consensus 82 ~G~~~~~l~~~~~ 94 (101)
T smart00239 82 IGQVTIPLSDLLL 94 (101)
T ss_pred eEEEEEEHHHccc
Confidence 9999999877643
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=99.10 E-value=1.1e-09 Score=115.56 Aligned_cols=143 Identities=17% Similarity=0.218 Sum_probs=97.0
Q ss_pred CccccccccccccccccCCCCCccccceeeEE-EeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSF-KGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA 229 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~f-Kg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A 229 (364)
|||.+...+.|.+|++..++. .|.+ |..+..-..+.+ . ...| .. ..|..-.|+|.|+.|
T Consensus 420 N~Qt~d~~m~lN~g~F~~NG~-------cGYVlKP~~lr~~~~~~-~-~fdp---~~--------~~~~~~~L~V~VisG 479 (599)
T PLN02952 420 NMQGYGKSLWLMHGMFRANGG-------CGYLKKPDFLMKKGFHD-E-VFDP---KK--------KLPVKKTLKVKVYLG 479 (599)
T ss_pred cccCCChHHHhhhchhccCCC-------CCceECCHHHcccCCcc-c-ccCC---CC--------CCCccceEEEEEEEC
Confidence 677778888899999877751 2433 222211000000 0 1101 01 122345688999999
Q ss_pred cCCCCC------CCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 230 YGLHPK------DKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 230 ~dL~p~------D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
++++.. +.....||||+|.+-+ ...+.+|+++.++.||+||+.|.|.+..|.-..|.|.|||+|..+.||+
T Consensus 480 q~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddf 559 (599)
T PLN02952 480 DGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDF 559 (599)
T ss_pred cccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCe
Confidence 987532 1123359999998743 2233355678888999999999999998988899999999999999999
Q ss_pred eEEEEeecccccc
Q psy4890 301 IGMTEMDLESRFY 313 (364)
Q Consensus 301 IGet~IdLenr~~ 313 (364)
||++.++|..+..
T Consensus 560 iGq~~lPv~~Lr~ 572 (599)
T PLN02952 560 GGQTCLPVSELRP 572 (599)
T ss_pred EEEEEcchhHhcC
Confidence 9999999988754
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=1.4e-09 Score=84.43 Aligned_cols=89 Identities=36% Similarity=0.606 Sum_probs=76.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
+.|+|++|++|......+..+||+.+.+.+ ...+ |..+.++.||.|++.|.|.+.......|.|+|||.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~--T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFK--TKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEe--cceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 368899999998877778899999999987 4443 4567888999999999999975567889999999998888999
Q ss_pred eEEEEeeccccc
Q psy4890 301 IGMTEMDLESRF 312 (364)
Q Consensus 301 IGet~IdLenr~ 312 (364)
||.+.+++.++.
T Consensus 79 ig~~~~~l~~l~ 90 (102)
T cd00030 79 LGEVEIPLSELL 90 (102)
T ss_pred eEEEEEeHHHhh
Confidence 999999998765
No 104
>KOG2059|consensus
Probab=99.05 E-value=6.2e-10 Score=116.73 Aligned_cols=122 Identities=22% Similarity=0.301 Sum_probs=98.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
-|+|.|.+|+||++.+..|..|||+.|.+....+. ||.++.+++.|-|+|.|.|++. +.-..|.+-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~-RT~tv~ksL~PF~gEe~~~~iP-~~F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVC-RTATVEKSLCPFFGEEFYFEIP-RTFRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhh-hhhhhhhhcCCccccceEEecC-cceeeEEEEEeccc-cccccc
Confidence 46789999999999999999999999998764432 4567899999999999999885 34567899999999 999999
Q ss_pred eEEEEeeccccc-cccCCCccccccccccCCCCCceEEEEEEEEeecc
Q psy4890 301 IGMTEMDLESRF-YSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGE 347 (364)
Q Consensus 301 IGet~IdLenr~-~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g~ 347 (364)
||.+.|.=+++- ++....|..|+| .+.+..-||+|++++.+-.+.
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~--VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQP--VDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccc--cCCChhhceeEEEEEEecccc
Confidence 999999877764 234456777743 344556799999999995554
No 105
>KOG1028|consensus
Probab=99.04 E-value=6.3e-10 Score=113.54 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=80.7
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK 290 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~ 290 (364)
-|....|+|.|++|++|..++..+.+||||++.+- +...+.+|.+.++++||+||++|.|.+... .+..|.|+||
T Consensus 294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 56778899999999999999999999999999873 234455677889999999999999987532 3567999999
Q ss_pred ecCCCCCCceeEEEEeeccc
Q psy4890 291 DHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLen 310 (364)
|+|.++++++||.+.+-...
T Consensus 374 d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EcccccccceeeEEEecCCC
Confidence 99999999999988887653
No 106
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.02 E-value=1.5e-09 Score=114.39 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=98.6
Q ss_pred CccccccccccccccccCCCCCccccceeeEE-EeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSF-KGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA 229 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~f-Kg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A 229 (364)
|||.+...+.|.+|++..++. .|.+ |..|..-+.+ ....+.| +. + .+..-+|.|.|+.|
T Consensus 419 N~Qt~d~~M~LN~G~F~~NG~-------CGYVLKP~~Lr~~~~--~~~~fdP---~~------~--~~~~~~L~V~VisG 478 (598)
T PLN02230 419 NMQGYGRALWLMEGMFRANGG-------CGYVKKPDFLMDAGP--NGQDFYP---KD------N--SCPKKTLKVKVCMG 478 (598)
T ss_pred cccCCChHHHhhcchhccCCC-------CCceECCHHhcCCCc--cccccCC---Cc------C--CCcCcEEEEEEEEc
Confidence 688889999999999988762 3433 2222111100 0000001 00 1 12334578889999
Q ss_pred cCCCCC------CCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 230 YGLHPK------DKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 230 ~dL~p~------D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
++++.. +.....||||+|.+-+ .....+|++..++.||+||+.|+|.+..|+-..|.|.|+|+|..++||+
T Consensus 479 q~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddf 558 (598)
T PLN02230 479 DGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDF 558 (598)
T ss_pred cCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCE
Confidence 987521 2223469999998742 2233355677889999999999999999999999999999999889999
Q ss_pred eEEEEeecccccc
Q psy4890 301 IGMTEMDLESRFY 313 (364)
Q Consensus 301 IGet~IdLenr~~ 313 (364)
||++.+|+..+..
T Consensus 559 iGQ~~lPv~~Lr~ 571 (598)
T PLN02230 559 GGQTCLPVSEIRQ 571 (598)
T ss_pred EEEEEcchHHhhC
Confidence 9999999987653
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.02 E-value=2.1e-09 Score=112.96 Aligned_cols=143 Identities=18% Similarity=0.156 Sum_probs=98.5
Q ss_pred CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA 229 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A 229 (364)
|||.+...+.|.+|++..++. .|.+ +.|.- .+... ....|.- ....|....|+|.|+.|
T Consensus 402 N~QT~d~~M~LN~G~F~~NG~-------cGYV-----LKP~~lr~~~~---~~~~fdp-----~~~~~~~~~L~V~Visg 461 (581)
T PLN02222 402 NMQGYGRSLWLMQGMFRANGG-------CGYI-----KKPDLLLKSGS---DSDIFDP-----KATLPVKTTLRVTIYMG 461 (581)
T ss_pred cccCCChhhhhhcchhccCCC-------CceE-----ECCHHhccCCc---cccccCC-----CCCCCccceEEEEEEEc
Confidence 688888899999999988761 3332 23310 00000 0000100 01123345688999999
Q ss_pred cCCC--C-C---CCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890 230 YGLH--P-K---DKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY 300 (364)
Q Consensus 230 ~dL~--p-~---D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~ 300 (364)
++++ . . +.....||||+|.+.+ ...+.+|+++.++.||+||+.|+|.+..|+-..|.|.|+|+|..+.|++
T Consensus 462 q~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddf 541 (581)
T PLN02222 462 EGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDF 541 (581)
T ss_pred ccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcE
Confidence 8753 1 1 1224579999999842 2333456678888999999999999999999999999999999889999
Q ss_pred eEEEEeecccccc
Q psy4890 301 IGMTEMDLESRFY 313 (364)
Q Consensus 301 IGet~IdLenr~~ 313 (364)
||++.+|+..+..
T Consensus 542 igq~~lPv~~Lr~ 554 (581)
T PLN02222 542 GGQTCLPVWELSQ 554 (581)
T ss_pred EEEEEcchhhhhC
Confidence 9999999987653
No 108
>PLN02228 Phosphoinositide phospholipase C
Probab=98.99 E-value=5.6e-09 Score=109.55 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=111.7
Q ss_pred CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA 229 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A 229 (364)
|||.+...+.|..|++..++. .|.+ +.|.- .+......| +.. .|....|+|.|++|
T Consensus 384 N~QT~d~~M~lN~g~F~~NG~-------cGYV-----LKP~~Lr~~~~~f~p---~~~--------~p~~~~L~I~ViSG 440 (567)
T PLN02228 384 NMQGHGKQLWIMQGMFRANGG-------CGYV-----KKPRILLDEHTLFDP---CKR--------LPIKTTLKVKIYTG 440 (567)
T ss_pred cccCCChHHHhhcCchhhCCC-------CCce-----eCchhhcccccccCC---ccC--------CCcCceEEEEEEEC
Confidence 688888888899999877651 2332 22310 011101101 111 22345688999999
Q ss_pred cCCC---CCC---CCCCCCcEEEEEECC---EEeeeeeeeecCCCCCcc-ceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 230 YGLH---PKD---KDGKCDPYIVLKTGS---VEINDRENYVTNQINPYF-GRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 230 ~dL~---p~D---~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~w-ne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
++|+ +.+ .....||||+|.+.+ .....+|+++.++.||+| |+.|+|.+..|+-..|.|.|+|+|..+.|+
T Consensus 441 q~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~ 520 (567)
T PLN02228 441 EGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQND 520 (567)
T ss_pred CccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCC
Confidence 9873 122 123479999998742 122234556778899999 999999999999999999999999888999
Q ss_pred eeEEEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEeecc
Q psy4890 300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQSGE 347 (364)
Q Consensus 300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq~g~ 347 (364)
+||++.|++..+.. .+|. ..| ++..|. .-..|++.+.+++.+
T Consensus 521 figq~~lPv~~Lr~-GYR~-VpL----~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 521 FAGQTCLPLPELKS-GVRA-VRL----HDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEEEEEcchhHhhC-CeeE-EEc----cCCCCCCCCCeEEEEEEEEcCcc
Confidence 99999999987643 2331 223 333442 346799999987664
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.93 E-value=2.8e-09 Score=117.03 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=96.3
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD 299 (364)
.-+.|++..|.||+..|.+|.+||||++.+.+++ ..+++++++|+||+||+.|.+.+..-....|.|.|+|||.-.++|
T Consensus 1040 G~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~-vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd 1118 (1227)
T COG5038 1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS-VYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKND 1118 (1227)
T ss_pred CcEEEEEeccCCCcccccCCCCCceEEEEeccee-cccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcc
Confidence 4578999999999999999999999999998765 334577999999999999999998777888999999999999999
Q ss_pred eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeeccc
Q psy4890 300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEI 348 (364)
Q Consensus 300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g~~ 348 (364)
.||.+.|||+.+.... .....+ |..-...+...|.++....|.+-++
T Consensus 1119 ~lg~~~idL~~l~~~~-~~n~~i-~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038 1119 LLGTAEIDLSKLEPGG-TTNSNI-PLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred ccccccccHhhcCcCC-ccceee-eccCcceEecccEeecceecchhhh
Confidence 9999999999875421 111112 1110112345666776666654443
No 110
>KOG0169|consensus
Probab=98.93 E-value=3.3e-09 Score=112.51 Aligned_cols=166 Identities=23% Similarity=0.308 Sum_probs=111.3
Q ss_pred CccccccccccccccccCCCCCccccceeeEEEeeEEEeec-CCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPA-DRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA 229 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~-p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A 229 (364)
|||.....+.|..|.+..+++ .|.++ .|. -.++...+ .| -..+ | ...+ +|+|.|++|
T Consensus 568 N~Qt~G~~l~L~~G~Fr~NGg-------CGYVl-----KP~~L~~~~~~F-~P--~~~~----~--~~~~-tL~IkI~sG 625 (746)
T KOG0169|consen 568 NFQTPGRMLDLNQGMFRANGG-------CGYVL-----KPDFLLDSGSTF-DP--KSNL----P--PVKK-TLKIKIISG 625 (746)
T ss_pred ecCCCChhhhhhhhhhccCCC-------ccceE-----CcHHHcCCCCcc-CC--CCCC----C--CCCc-eeEEEEEec
Confidence 588888888999999988872 55543 231 11111111 11 1111 2 2233 788999999
Q ss_pred cCCCCCCC----CCCCCcEEEEEECCE---Eeeeeee-eecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890 230 YGLHPKDK----DGKCDPYIVLKTGSV---EINDREN-YVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 230 ~dL~p~D~----~G~sDPYV~I~Lg~~---~~~tkt~-~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
+++++.-. ...+||||.|.+.+- ....+|+ +..++.||.|++.|+|.++.|.-+.|++.|+|+|..++|||+
T Consensus 626 q~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~ 705 (746)
T KOG0169|consen 626 QGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFI 705 (746)
T ss_pred CcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCccccc
Confidence 97755322 245899999998542 2233444 567899999999999999999999999999999999999999
Q ss_pred EEEEeeccccccccCCCccccccccccCCC--CCceEEEEEEEEe
Q psy4890 302 GMTEMDLESRFYSRHRGSCARWTSDLEVSG--SSPGEVLPGITLQ 344 (364)
Q Consensus 302 Get~IdLenr~~s~~~a~~gL~p~~y~~~G--~~~GEIllSL~fq 344 (364)
|++.+|++.+.. .+|+ ..| ++..| ...-.|.+.++++
T Consensus 706 GQ~tlP~~~L~~-GyRh-VpL----~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 706 GQTTLPVSELRQ-GYRH-VPL----LSREGEALSSASLFVRIAIV 744 (746)
T ss_pred ceeeccHHHhhC-ceee-eee----cCCCCccccceeEEEEEEEe
Confidence 999999987643 2232 222 23333 2234566666664
No 111
>KOG1328|consensus
Probab=98.91 E-value=7.8e-10 Score=116.14 Aligned_cols=91 Identities=24% Similarity=0.404 Sum_probs=78.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-----EeeeeeeeecCCCCCccceEEEEEeecCC----CCeEEEEEEec
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-----EINDRENYVTNQINPYFGRHFEIQGSFPT----DAKLTVEIKDH 292 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-----~~~tkt~~i~~tlnP~wne~Fef~v~~p~----~~~L~V~V~D~ 292 (364)
+-|-|+-|+++.|.|+||.+||||+|.++++ ....+|+++.+|+||+|+|+|+|+++... ...+.++|||+
T Consensus 949 L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDH 1028 (1103)
T KOG1328|consen 949 LVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDH 1028 (1103)
T ss_pred hhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeecc
Confidence 3466899999999999999999999999863 23456788999999999999999987422 56899999999
Q ss_pred CCCCCCceeEEEEeeccccc
Q psy4890 293 DSVSKDDYIGMTEMDLESRF 312 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~ 312 (364)
|-++.+||-|++.+.|.+..
T Consensus 1029 D~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1029 DYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ceecccccchHHHHhhCCCC
Confidence 99999999999999988864
No 112
>KOG1328|consensus
Probab=98.84 E-value=8.7e-10 Score=115.79 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=99.0
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--E---------------------------EeeeeeeeecCCCCCc
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--V---------------------------EINDRENYVTNQINPY 268 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~---------------------------~~~tkt~~i~~tlnP~ 268 (364)
..+.+.|.+.+|+||..+|.+|.+|||+++.+-. . +...-|.+.++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 3345567789999999999999999999986521 0 1112356788999999
Q ss_pred cceEEEEEeecCCCCeEEEEEEecCC---------------------------------CCC---CceeEEEEeeccccc
Q psy4890 269 FGRHFEIQGSFPTDAKLTVEIKDHDS---------------------------------VSK---DDYIGMTEMDLESRF 312 (364)
Q Consensus 269 wne~Fef~v~~p~~~~L~V~V~D~D~---------------------------------isk---DD~IGet~IdLenr~ 312 (364)
|+|.|.|++..-....+++-|||+|. .+. |||+|.+.|+|.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99999999988888999999999985 133 899999999999998
Q ss_pred cccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 313 YSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 313 ~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
.....+|+.|+|.+- ...-+|.|++.|++
T Consensus 272 ~~Gld~WFkLepRS~--~S~VqG~~~LklwL 300 (1103)
T KOG1328|consen 272 PDGLDQWFKLEPRSD--KSKVQGQVKLKLWL 300 (1103)
T ss_pred cchHHHHhccCcccc--cccccceEEEEEEE
Confidence 767778888866432 23569999999999
No 113
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.71 E-value=7.9e-08 Score=105.83 Aligned_cols=123 Identities=21% Similarity=0.301 Sum_probs=95.5
Q ss_pred cceeEEEEEEEEEecCCCCCC--CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecC
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKD--KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHD 293 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D--~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D 293 (364)
+..-.+|.|+|.+|.+|...| .++..|||+.+...+.... ||++..+++||+|||+|-+.+. .....|.++|||.+
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~g-kT~v~~nt~nPvwNEt~Yi~ln-s~~d~L~LslyD~n 509 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIG-KTRVKKNTLNPVWNETFYILLN-SFTDPLNLSLYDFN 509 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCC-ccceeeccCCccccceEEEEec-ccCCceeEEEEecc
Confidence 445678899999999999988 5899999999986543332 6678899999999999988875 55778999999999
Q ss_pred CCCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890 294 SVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 294 ~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f 343 (364)
...+|+.+|.+.++|..+...... .-.+ . +......+.|++...+.|
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~-~ne~-~-e~~~~~k~vGrL~yDl~f 556 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVK-KNEL-Y-EFLRNTKNVGRLTYDLRF 556 (1227)
T ss_pred ccCCcceeeeEEechHHhhhcccc-ccce-e-eeeccCccceEEEEeeee
Confidence 999999999999998766432111 1112 1 112256789999999998
No 114
>KOG1264|consensus
Probab=98.70 E-value=8.6e-08 Score=102.08 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=101.2
Q ss_pred CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC--CCCCCCCCCCccccccccccCCCcceeEEEEEEEEE
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD--RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVR 228 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p--~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~ 228 (364)
+||.--+.+.|.+|++..++ .+...+.|.. .+.=.|. +|..+.++ ..+.|.|.|+.
T Consensus 1016 N~QTgDKpMQmNqa~F~~ng------------rcGYvLqPs~Mrte~fdP~-n~e~~~~l---------~p~~lsv~vig 1073 (1267)
T KOG1264|consen 1016 NFQTGDKPMQMNQALFSLNG------------RCGYVLQPSSMRTEKFDPM-NPESQRGL---------LPMTLSVKVLG 1073 (1267)
T ss_pred eccCCCchhhhhHHHhhcCC------------ceeeEecchhcccccCCCC-ChHHhccc---------cceEEEEEEee
Confidence 57777788888898887776 2223333421 1111221 33345555 34677888999
Q ss_pred ecCCCCCCCCCCCCcEEEEEECC-----EEeeeeeeeecCCCCCccc-eEEEEEeecCCCCeEEEEEEecCCCCCCceeE
Q psy4890 229 AYGLHPKDKDGKCDPYIVLKTGS-----VEINDRENYVTNQINPYFG-RHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIG 302 (364)
Q Consensus 229 A~dL~p~D~~G~sDPYV~I~Lg~-----~~~~tkt~~i~~tlnP~wn-e~Fef~v~~p~~~~L~V~V~D~D~iskDD~IG 302 (364)
|+.|+... .|.+.|||.|.+.+ .+.+ ++.++.+++||+|| +.|+|++..|+-..|.+.|+|.|.++...|||
T Consensus 1074 aRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~-t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~Fia 1151 (1267)
T KOG1264|consen 1074 ARHLPKLG-RSIACPFVEVEIIGAEYDTNKFK-TTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLA 1151 (1267)
T ss_pred ccccccCC-CCccCCcEEEEEeccccCCCceE-EEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceee
Confidence 99998542 46678999998743 2333 34578999999999 99999999999999999999999999888999
Q ss_pred EEEeeccccc
Q psy4890 303 MTEMDLESRF 312 (364)
Q Consensus 303 et~IdLenr~ 312 (364)
++..|+..+.
T Consensus 1152 qA~yPv~~ik 1161 (1267)
T KOG1264|consen 1152 QATYPVKAIK 1161 (1267)
T ss_pred eeecchhhhh
Confidence 9999987653
No 115
>PLN02270 phospholipase D alpha
Probab=98.44 E-value=2.9e-06 Score=91.96 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=87.3
Q ss_pred eEEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEECCEEeeeeeeeecC-CCCCccceEEEEEeec
Q psy4890 219 NVTIRVYIVRAYGLHPKD------------------KDGKCDPYIVLKTGSVEINDRENYVTN-QINPYFGRHFEIQGSF 279 (364)
Q Consensus 219 ~~~LrV~Vv~A~dL~p~D------------------~~G~sDPYV~I~Lg~~~~~tkt~~i~~-tlnP~wne~Fef~v~~ 279 (364)
...|.|+|.+|++|+..+ ..+.+||||.|.+++.++. ||.++.+ ..||+|+|.|.+.|..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~-rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVG-RTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEE-EEeecCCCCCCCccccceEEeecc
Confidence 456788899999887521 1256799999999876543 3456777 4699999999999976
Q ss_pred CCCCeEEEEEEecCCCCCCceeEEEEeeccccccc-cCCCccccccccccCCC-CCc--eEEEEEEEEeec
Q psy4890 280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSG-SSP--GEVLPGITLQSG 346 (364)
Q Consensus 280 p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G-~~~--GEIllSL~fq~g 346 (364)
+. ..+.++|-|.|.++ ..+||.+.|+.+++.-. ....|..+ ...+| +.. ..|+++|+|-..
T Consensus 86 ~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~----~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 86 MA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEI----LDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred Cc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEec----cCCCCCcCCCCCEEEEEEEEEEc
Confidence 54 78999999999996 45999999999987543 23344443 11222 222 489999999443
No 116
>KOG2059|consensus
Probab=98.42 E-value=3.5e-07 Score=96.50 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=96.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEE--eeeeeeeecCCCCCccceEEEEEeecC---------------CCCe
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE--INDRENYVTNQINPYFGRHFEIQGSFP---------------TDAK 284 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~--~~tkt~~i~~tlnP~wne~Fef~v~~p---------------~~~~ 284 (364)
+++.++.++++.|.+ +|.+|||+.+...+.. ...+|..+.+|.+|.|+|.|.|.++.+ ....
T Consensus 133 ~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ 211 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLE 211 (800)
T ss_pred chhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceee
Confidence 345566777777776 5569999999875422 123556789999999999999998754 2346
Q ss_pred EEEEEEe-cCCCCCCceeEEEEeeccccc-cccCCCcccccccccc---CCCCCceEEEEEEEEeeccc
Q psy4890 285 LTVEIKD-HDSVSKDDYIGMTEMDLESRF-YSRHRGSCARWTSDLE---VSGSSPGEVLPGITLQSGEI 348 (364)
Q Consensus 285 L~V~V~D-~D~iskDD~IGet~IdLenr~-~s~~~a~~gL~p~~y~---~~G~~~GEIllSL~fq~g~~ 348 (364)
|+|++|+ .+....++|+|++.+++.+.. .+...+|+-|+|..-. .+|.+.|.+++.++|.+..+
T Consensus 212 irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 212 IRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred EEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 8899999 677778999999999998776 5577889999775332 24578999999999977653
No 117
>KOG1031|consensus
Probab=98.42 E-value=5.6e-07 Score=93.25 Aligned_cols=120 Identities=21% Similarity=0.307 Sum_probs=93.2
Q ss_pred EEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCEEeeeeeeeecCCCCCccce-EEEEEeec--CCCCeEEEEEEecCCC
Q psy4890 220 VTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSVEINDRENYVTNQINPYFGR-HFEIQGSF--PTDAKLTVEIKDHDSV 295 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne-~Fef~v~~--p~~~~L~V~V~D~D~i 295 (364)
..|.|.|..|++|+.+|.. ...|.||.|++++...+| .+..+++||.||. .|.|++.. -++..|.|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~kt--dvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKT--DVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceeh--hhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 3467889999999999874 467999999999877766 5678999999994 68888864 3588999999999999
Q ss_pred CCCceeEEEEeecccccccc-----CCC---ccccccccccC-CCCCceEEEEEEEE
Q psy4890 296 SKDDYIGMTEMDLESRFYSR-----HRG---SCARWTSDLEV-SGSSPGEVLPGITL 343 (364)
Q Consensus 296 skDD~IGet~IdLenr~~s~-----~~a---~~gL~p~~y~~-~G~~~GEIllSL~f 343 (364)
+.+|-||.+.|++..+.++. |+. -.|+ -.-|++ +| -+|||.+-+..
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw-~pifdtihg-irgeinvivkv 135 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGW-FPIFDTIHG-IRGEINVIVKV 135 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeee-eecceeccc-ccceeEEEEEE
Confidence 99999999999998877651 221 1233 233443 44 68999887654
No 118
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.28 E-value=3.8e-06 Score=70.35 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=65.7
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC
Q psy4890 222 IRVYIVRAYGLHPKD---KDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK 297 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D---~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk 297 (364)
|.|+|..|+|+.-.+ ..+.+||||.|++++. +.+|+ -+.||.||+.|.|.+. ....+.+.|||... .+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr-----~srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTK-----PSRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEecc-----CCCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 467899999998777 5788999999999976 44443 2589999999999994 58889999999853 24
Q ss_pred CceeEEEEeeccccc
Q psy4890 298 DDYIGMTEMDLESRF 312 (364)
Q Consensus 298 DD~IGet~IdLenr~ 312 (364)
.-.||-..+.|.++.
T Consensus 73 ~~Pi~llW~~~sdi~ 87 (109)
T cd08689 73 PVPVGLLWLRLSDIA 87 (109)
T ss_pred ecceeeehhhHHHHH
Confidence 457899888887654
No 119
>KOG1013|consensus
Probab=98.01 E-value=1.1e-06 Score=86.07 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=94.9
Q ss_pred ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEE--eecC-CCCeEEEEEE
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQ--GSFP-TDAKLTVEIK 290 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~--v~~p-~~~~L~V~V~ 290 (364)
.....+.++|.+|++|+|++.+|..|||+++.++. ...+-++++..+++||.|++.-... ...+ ..+.+.+.|.
T Consensus 90 ~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 90 SESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeec
Confidence 34567789999999999999999999999999864 2222344567899999999865544 3333 3678889999
Q ss_pred ecCCCCCCceeEEEEeeccccccc---cCCC--ccccccc-cccC-CCCCceEEEEEEEEeecccCCCCccceee
Q psy4890 291 DHDSVSKDDYIGMTEMDLESRFYS---RHRG--SCARWTS-DLEV-SGSSPGEVLPGITLQSGEINSDPVRYWRS 358 (364)
Q Consensus 291 D~D~iskDD~IGet~IdLenr~~s---~~~a--~~gL~p~-~y~~-~G~~~GEIllSL~fq~g~~~~~~~~g~~~ 358 (364)
|.+.+.+++++|+..+.|.-+-.. .++. ..++ |. .-+. +-.++|+|++||.|..- -...+-+|.+
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~l-p~~rad~~~~E~rg~i~isl~~~s~--~~~l~vt~iR 241 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSL-PSERADRDEDEERGAILISLAYSST--TPGLIVTIIR 241 (362)
T ss_pred cCcccccccCcccchhhhhccChhhcchhhhhhhccC-CcccccccchhhccceeeeeccCcC--CCceEEEEEE
Confidence 999999999999999777432211 1222 1233 21 1111 23689999999999322 1224555543
No 120
>KOG1013|consensus
Probab=97.82 E-value=2e-05 Score=77.36 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=72.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeec--CCCCeEEEEEEecCCCC
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSF--PTDAKLTVEIKDHDSVS 296 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~--p~~~~L~V~V~D~D~is 296 (364)
+.|.+++|..|...|.+|-+||||...+. +.+.+.++...++++||.|++.|.+.... -....+.|+|||++.-+
T Consensus 235 l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~ 314 (362)
T KOG1013|consen 235 LIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGK 314 (362)
T ss_pred eEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCc
Confidence 45889999999999999999999999875 24555667778999999999999998752 13678999999999887
Q ss_pred CCceeEEEEeecc
Q psy4890 297 KDDYIGMTEMDLE 309 (364)
Q Consensus 297 kDD~IGet~IdLe 309 (364)
..|++|-...-+.
T Consensus 315 s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 315 SNDSIGGSMLGGY 327 (362)
T ss_pred CccCCCccccccc
Confidence 8999987665543
No 121
>PLN02352 phospholipase D epsilon
Probab=97.61 E-value=0.00053 Score=74.46 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=78.8
Q ss_pred eeEEEEEEEEEecCCCCC----CCC-CCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEec
Q psy4890 218 VNVTIRVYIVRAYGLHPK----DKD-GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDH 292 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~----D~~-G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~ 292 (364)
-...|.++|.+|.-+... +.. ...|||+.|.+++.++.. | .+.-||+|+|.|.+.|..+.+..+.++|-|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~r-t---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAK-T---SHEYDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEec-C---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence 345677888888633221 111 112999999998866542 2 455699999999999988877889999988
Q ss_pred CCCCCCceeEEEEeeccccccc-c-CCCccccccccccCCC-CCce-EEEEEEEEeec
Q psy4890 293 DSVSKDDYIGMTEMDLESRFYS-R-HRGSCARWTSDLEVSG-SSPG-EVLPGITLQSG 346 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~s-~-~~a~~gL~p~~y~~~G-~~~G-EIllSL~fq~g 346 (364)
.-.+||.+.|+.+++.-. . ...|..+ ...+| +..| .|+++|+|...
T Consensus 83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 ----KCSILGRFHIQAHQIVTEASFINGFFPL----IMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ----CCeEEEEEEEEHHHhhCCCcccceEEEc----ccCCCCCCCCCEEEEEEEEEEh
Confidence 267999999999987543 1 2334433 12222 3344 89999999444
No 122
>KOG0905|consensus
Probab=97.42 E-value=0.00011 Score=81.68 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=78.6
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEee---cCCCCeEEEEEEe
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGS---FPTDAKLTVEIKD 291 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~---~p~~~~L~V~V~D 291 (364)
.+.+|.|-|.-|++|+-..-....||||+.++.. +..+.||+++++|.||.|||+.+..-. .-..+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 3567888899999996554456689999999853 445567788999999999999888732 2346899999999
Q ss_pred cCCCCCCceeEEEEeeccccccc
Q psy4890 292 HDSVSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 292 ~D~iskDD~IGet~IdLenr~~s 314 (364)
.+.+..+.++|.+.|+|....+.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~ 1624 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLL 1624 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchh
Confidence 99999999999999999876554
No 123
>KOG1326|consensus
Probab=97.38 E-value=3.9e-05 Score=83.89 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=77.4
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEE-eecCC--------CCeEE
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQ-GSFPT--------DAKLT 286 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~-v~~p~--------~~~L~ 286 (364)
..+...+|+||.+|+.|...|..+.+|||+.+...++...| .++++|+||.|+++..|. +.+++ ...+.
T Consensus 202 e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T--~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v 279 (1105)
T KOG1326|consen 202 EVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKET--EVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRV 279 (1105)
T ss_pred hhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccccccee--EeecCcCCCCccceeeccceeecCccchhhcCCCeEE
Confidence 45677889999999999999999999999999877776655 568999999999999985 44443 36788
Q ss_pred EEEEecCCCCCCceeEEEEeecc
Q psy4890 287 VEIKDHDSVSKDDYIGMTEMDLE 309 (364)
Q Consensus 287 V~V~D~D~iskDD~IGet~IdLe 309 (364)
++|||.|..+.||++|.+.....
T Consensus 280 ~e~yd~dr~g~~ef~gr~~~~p~ 302 (1105)
T KOG1326|consen 280 FEVYDLDRSGINEFKGRKKQRPY 302 (1105)
T ss_pred EEeehhhhhchHHhhcccccceE
Confidence 99999999999999999876543
No 124
>PLN02964 phosphatidylserine decarboxylase
Probab=97.25 E-value=0.00049 Score=73.87 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=70.0
Q ss_pred cceeEEEEEEEEEecCCCCCCCCCCCCcEEE-EEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC
Q psy4890 216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIV-LKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS 294 (364)
Q Consensus 216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~-I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~ 294 (364)
++...++++++++|. ++ ..|||.. +++|.+..+| +...+|+||+||+...|.+...+....++.|||.+.
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRT--ETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeee--ccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 456677889999987 32 2588766 4678888776 668999999999998888875555667999999999
Q ss_pred CCCCceeEEEEeecccc
Q psy4890 295 VSKDDYIGMTEMDLESR 311 (364)
Q Consensus 295 iskDD~IGet~IdLenr 311 (364)
+++++++|-+.+||.+.
T Consensus 121 ~s~n~lv~~~e~~~t~f 137 (644)
T PLN02964 121 LSKNTLVGYCELDLFDF 137 (644)
T ss_pred CCHHHhhhheeecHhhc
Confidence 99999999999987543
No 125
>KOG1011|consensus
Probab=97.13 E-value=0.0015 Score=69.27 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=87.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----EEeeeeeeeecCCCCCccceEEEEEeec---CCCCeEEEEEEec
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-----VEINDRENYVTNQINPYFGRHFEIQGSF---PTDAKLTVEIKDH 292 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-----~~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L~V~V~D~ 292 (364)
.|+|.|+.|.+|.-.. +|.--|||.+.+-+ ++.+..|+...++-.|.+||+|.|.... |+...|.++|-|+
T Consensus 1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 3567899999998865 68889999998632 2333334557788999999999998754 6678999999999
Q ss_pred CCCCCCceeEEEEeeccccccccCCCccccc-cccccCCCCCceEEEEEEEEeec
Q psy4890 293 DSVSKDDYIGMTEMDLESRFYSRHRGSCARW-TSDLEVSGSSPGEVLPGITLQSG 346 (364)
Q Consensus 293 D~iskDD~IGet~IdLenr~~s~~~a~~gL~-p~~y~~~G~~~GEIllSL~fq~g 346 (364)
-....|..+|-+.+.|.+.-. ++.|+.| |....++-...|=+.++|--||.
T Consensus 1205 CFAReDRvvGl~VlqL~~va~---kGS~a~W~pLgrrihmDeTGLtiLRILSQRs 1256 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVAD---KGSCACWVPLGRRIHMDETGLTILRILSQRS 1256 (1283)
T ss_pred eeecccceeeeeeeehhhHhh---cCceeEeeeccccccccccchhHHHHhhhcc
Confidence 988788899999999988753 2333332 22333444556766666655554
No 126
>KOG1327|consensus
Probab=96.93 E-value=0.0022 Score=67.03 Aligned_cols=87 Identities=33% Similarity=0.442 Sum_probs=68.5
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEE----CCEEeeeeeeeecCCCCCccceEEEEEe----ecCCCCeEEEEEEecCCCC
Q psy4890 225 YIVRAYGLHPKDKDGKCDPYIVLKT----GSVEINDRENYVTNQINPYFGRHFEIQG----SFPTDAKLTVEIKDHDSVS 296 (364)
Q Consensus 225 ~Vv~A~dL~p~D~~G~sDPYV~I~L----g~~~~~tkt~~i~~tlnP~wne~Fef~v----~~p~~~~L~V~V~D~D~is 296 (364)
-.++|.+|.++|..+++|||..+.- +......++.++++++||.|.. |.+.. ....+..+.|.+||++.-+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 3567899999999999999999853 2344556778899999999954 44442 2234688999999999999
Q ss_pred CCceeEEEEeeccccc
Q psy4890 297 KDDYIGMTEMDLESRF 312 (364)
Q Consensus 297 kDD~IGet~IdLenr~ 312 (364)
++++||++...+..+-
T Consensus 220 ~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQ 235 (529)
T ss_pred CcCceeEecccHHHhc
Confidence 9999999998877653
No 127
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.89 E-value=0.018 Score=51.54 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=76.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEeee--eeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIND--RENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD 293 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~t--kt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D 293 (364)
.++|.|+.+.++...+ .+|-||.+.+ |++.... .|.+++. -++.|||...|.+ .+|.++.|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 3578899998887643 3578888865 5543321 2334444 6799999988875 4588999999999976
Q ss_pred CCC----CCceeEEEEeeccccc--cccCCCccccccccc-----------cCCCCCceEEEEEEEEee
Q psy4890 294 SVS----KDDYIGMTEMDLESRF--YSRHRGSCARWTSDL-----------EVSGSSPGEVLPGITLQS 345 (364)
Q Consensus 294 ~is----kDD~IGet~IdLenr~--~s~~~a~~gL~p~~y-----------~~~G~~~GEIllSL~fq~ 345 (364)
.-. ..-.||.+.+.|-+.. +.+......+|+... +.+.++.+...+++.|++
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~~~~~~~np~g~~~~Np~~~~~~l~~~f~~ 153 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPHGLEDLLNPIGVTGSNPNKDTPCLELEFDR 153 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCcCchhhcCCcCcCcCCCCCCceEEEEEECC
Confidence 421 1246999999985522 223333455555311 112245566777777743
No 128
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.63 E-value=0.0034 Score=54.65 Aligned_cols=91 Identities=22% Similarity=0.337 Sum_probs=64.9
Q ss_pred EEEEEEecCCCCCCC-----C--------CCCCcEEEEEEC--CEEeeeeeeeecCCCCCccceEEEEEeecC-------
Q psy4890 223 RVYIVRAYGLHPKDK-----D--------GKCDPYIVLKTG--SVEINDRENYVTNQINPYFGRHFEIQGSFP------- 280 (364)
Q Consensus 223 rV~Vv~A~dL~p~D~-----~--------G~sDPYV~I~Lg--~~~~~tkt~~i~~tlnP~wne~Fef~v~~p------- 280 (364)
.|.|++|.||+.... + =..++||.+.+. ++....+|+.+.++..|.|+..++|.|++-
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge 81 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGE 81 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCc
Confidence 467888888864321 0 124789999864 333334456689999999999999998731
Q ss_pred --------CCCeEEEEEEecCCC----------CCCceeEEEEeecccccc
Q psy4890 281 --------TDAKLTVEIKDHDSV----------SKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 281 --------~~~~L~V~V~D~D~i----------skDD~IGet~IdLenr~~ 313 (364)
+...+.++||+...- .+|=++|.+.||+.+++-
T Consensus 82 ~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~ 132 (143)
T cd08683 82 AISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLT 132 (143)
T ss_pred cccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhh
Confidence 146789999997542 245578999999988764
No 129
>KOG1265|consensus
Probab=96.40 E-value=0.0071 Score=66.15 Aligned_cols=134 Identities=15% Similarity=0.194 Sum_probs=91.6
Q ss_pred CccccccccccccccccCCCCCccccceeeEEEeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEec
Q psy4890 151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAY 230 (364)
Q Consensus 151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A~ 230 (364)
|||.-+.-+.|.-|++.-++. .|. .+.|. =.+.|+...+.|..- |-.+.+...+.|.|++|+
T Consensus 652 NfQT~dlaMQlN~g~FEyNG~-------sGY-----llKPd--fmRrpDr~fdPFse~----~VdgvIA~t~sV~VISgq 713 (1189)
T KOG1265|consen 652 NFQTPDLAMQLNMGMFEYNGG-------SGY-----LLKPD--FMRRPDRQFDPFSES----PVDGVIAATLSVTVISGQ 713 (1189)
T ss_pred eccCccHHHHhhhhheeecCC-------ccc-----eeChH--HhhCCCcCcCCcccC----cccceEEeeEEEEEEeee
Confidence 688888889999999877762 222 22332 011111111113332 445668889999999999
Q ss_pred CCCCCCCCCCCCcEEEEEECC-------EEeeeeeeeecCCCCCccce-EEEEE-eecCCCCeEEEEEEecCCCCCCcee
Q psy4890 231 GLHPKDKDGKCDPYIVLKTGS-------VEINDRENYVTNQINPYFGR-HFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYI 301 (364)
Q Consensus 231 dL~p~D~~G~sDPYV~I~Lg~-------~~~~tkt~~i~~tlnP~wne-~Fef~-v~~p~~~~L~V~V~D~D~iskDD~I 301 (364)
-|..++ ...||.|.+-+ +..+|++ ...+++||+|++ .|.|. +.+|.-..|.|.||+.. ..+|
T Consensus 714 FLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt-~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~i 784 (1189)
T KOG1265|consen 714 FLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRT-VQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFI 784 (1189)
T ss_pred eccccc----cCceEEEEecCCCchhhhhhhhhcc-ccCCCCCcccccCCcccceecccchhheeeeeeccC----Ccee
Confidence 997765 44899998632 2334443 346899999996 58986 67799999999999965 4699
Q ss_pred EEEEeecccc
Q psy4890 302 GMTEMDLESR 311 (364)
Q Consensus 302 Get~IdLenr 311 (364)
|+-.+++..+
T Consensus 785 g~RIlpvd~l 794 (1189)
T KOG1265|consen 785 GQRILPVDGL 794 (1189)
T ss_pred eeeccchhcc
Confidence 9999998755
No 130
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.73 E-value=0.057 Score=48.70 Aligned_cols=106 Identities=11% Similarity=0.104 Sum_probs=70.6
Q ss_pred EEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEeeee--ee----eecCCCCCccceEEEEEe---ecCCCCeEEEE
Q psy4890 220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEINDR--EN----YVTNQINPYFGRHFEIQG---SFPTDAKLTVE 288 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~tk--t~----~i~~tlnP~wne~Fef~v---~~p~~~~L~V~ 288 (364)
..++|.|..+.++++.......|-||.+.+ |++..... |. +..-...+.||+...|.+ .+|.++.|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 446788889999988765556788888865 55433211 11 111223577999988875 45889999999
Q ss_pred EEecCCCC---------CCceeEEEEeecccc--ccccCCCccccccc
Q psy4890 289 IKDHDSVS---------KDDYIGMTEMDLESR--FYSRHRGSCARWTS 325 (364)
Q Consensus 289 V~D~D~is---------kDD~IGet~IdLenr--~~s~~~a~~gL~p~ 325 (364)
||+....+ .+..||-+.++|-+. .+....-..+||+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~ 135 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPP 135 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccC
Confidence 99987554 356899999998553 22233344566654
No 131
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.73 E-value=0.1 Score=47.37 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=67.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD 293 (364)
Q Consensus 221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D 293 (364)
.++|+|+.+.++...+ ...+-||.+.+ |++... ..|.+++..-++.|||...|.+ .+|.+..|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 4678889988887622 33566777654 554432 1334455556799999998875 4588999999999975
Q ss_pred CCC----------------CCceeEEEEeeccccc--cccCCCccccccc
Q psy4890 294 SVS----------------KDDYIGMTEMDLESRF--YSRHRGSCARWTS 325 (364)
Q Consensus 294 ~is----------------kDD~IGet~IdLenr~--~s~~~a~~gL~p~ 325 (364)
... .+..||.+.+.|-+.. +........+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~ 136 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTY 136 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCC
Confidence 422 2468999999985522 2223334555553
No 132
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.60 E-value=0.017 Score=47.37 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=61.5
Q ss_pred EEEEEecCCCCCCCCCC-CCcEEEEEE-CCEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCCCc
Q psy4890 224 VYIVRAYGLHPKDKDGK-CDPYIVLKT-GSVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDD 299 (364)
Q Consensus 224 V~Vv~A~dL~p~D~~G~-sDPYV~I~L-g~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~iskDD 299 (364)
++|+.|+||.-....|. ..-|++--+ .++....|+.....+.||+|.|+|.|.+.+- .+-.|.+.|+. ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 67899999976544332 223444222 2344555667788999999999999997653 36678899998 455788
Q ss_pred eeEEEEeecccc
Q psy4890 300 YIGMTEMDLESR 311 (364)
Q Consensus 300 ~IGet~IdLenr 311 (364)
.||.+.+.|.+.
T Consensus 81 ~iG~~sL~l~s~ 92 (103)
T cd08684 81 TIGECSLSLRTL 92 (103)
T ss_pred eeeEEEeecccC
Confidence 999999988764
No 133
>KOG2060|consensus
Probab=95.52 E-value=0.0088 Score=60.02 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=73.3
Q ss_pred EEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEE-ecCC
Q psy4890 220 VTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIK-DHDS 294 (364)
Q Consensus 220 ~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~-D~D~ 294 (364)
..+.|-|++|++|..+... ..++|||+|++... ..+.+++...+|+.|.+-....|.-+ |..+.|.++|| |+..
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdygR 347 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDYGR 347 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccccc
Confidence 3567889999999876543 36899999997432 23335566789999988877777776 67888999998 5677
Q ss_pred CCCCceeEEEEeeccccccc
Q psy4890 295 VSKDDYIGMTEMDLESRFYS 314 (364)
Q Consensus 295 iskDD~IGet~IdLenr~~s 314 (364)
+-++.|+|.+.|-|+++-++
T Consensus 348 md~k~fmg~aqi~l~eL~ls 367 (405)
T KOG2060|consen 348 MDHKSFMGVAQIMLDELNLS 367 (405)
T ss_pred cchHHHhhHHHHHhhhhccc
Confidence 77889999999999988775
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.48 E-value=0.1 Score=45.98 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=63.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee-e-eeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecCC
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN-D-RENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHDS 294 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~-t-kt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D~ 294 (364)
++|.|....++.+.+ ....+-||.+++ |++... . .+.......++.|||...|.+ .+|.++.|.|+||+.+.
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 455566666665521 233556666654 443221 1 112222336799999988874 46889999999999876
Q ss_pred CC--CCceeEEEEeeccccc--cccCCCccccccc
Q psy4890 295 VS--KDDYIGMTEMDLESRF--YSRHRGSCARWTS 325 (364)
Q Consensus 295 is--kDD~IGet~IdLenr~--~s~~~a~~gL~p~ 325 (364)
.+ ++..||.+.++|-+.. +........+|+.
T Consensus 89 ~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~ 123 (156)
T cd08380 89 PGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPG 123 (156)
T ss_pred CCCCcceEEEEEeEEeEcccCcEecCCEEEeccCC
Confidence 54 4679999999985532 2233334556553
No 135
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.48 E-value=0.067 Score=47.93 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=51.4
Q ss_pred CCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEee---cCCCCeEEEEEEecCCCCCCceeEEEEeeccc
Q psy4890 240 KCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQGS---FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 240 ~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v~---~p~~~~L~V~V~D~D~iskDD~IGet~IdLen 310 (364)
.+|-||.+.+ +++... ..|.+++-+..+.|||...|.+. +|.++.|.|+|||.+..++...||.+.++|-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3566666654 333221 13345666677899999888764 58899999999998866667799999999865
No 136
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.14 E-value=0.68 Score=39.64 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=74.8
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE--eeeeeeeecCCCCCccceEEEEEeecC--------CCCeEEE
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE--INDRENYVTNQINPYFGRHFEIQGSFP--------TDAKLTV 287 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~--~~tkt~~i~~tlnP~wne~Fef~v~~p--------~~~~L~V 287 (364)
.++.+.|.|.+..+++. ...--+|+...++.. ..+.......+-.-.|++.|.+.+++. ....+.+
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45677888888888877 224456666666553 222223344566789999999998752 2567899
Q ss_pred EEEecCCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEee
Q psy4890 288 EIKDHDSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQS 345 (364)
Q Consensus 288 ~V~D~D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~ 345 (364)
.|+....-++...+|.+.|||.+..-.. ......+ +..-+ ......|.++|.+..
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~-~l~~~--~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRL-LLKKC--KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEE-eCccC--CCCCcEEEEEEEEEE
Confidence 9998753333368999999998764321 1111112 22212 133466777777743
No 137
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.41 E-value=1.6 Score=39.28 Aligned_cols=123 Identities=12% Similarity=0.137 Sum_probs=79.7
Q ss_pred ceeEEEEEEEEEecCCCCCCC--CCCCCcEEEEE--ECCEEeeeeeeeecCCCCCccceEEEEEeecCC-----------
Q psy4890 217 KVNVTIRVYIVRAYGLHPKDK--DGKCDPYIVLK--TGSVEINDRENYVTNQINPYFGRHFEIQGSFPT----------- 281 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~--Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~----------- 281 (364)
|.+..+.+.|+.|+-....-. .|..+.-+.+. +++++..+ +.++.+.+|.|++.|-|++....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S--~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRS--KPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEec--CCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 455566788888764322111 14444444444 46777766 55899999999999999875331
Q ss_pred --CCeEEEEEEecCCCCCCceeEEEEeeccccccccCCCcccccccccc-CCC---CCceEEEEEEEE
Q psy4890 282 --DAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLE-VSG---SSPGEVLPGITL 343 (364)
Q Consensus 282 --~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~-~~G---~~~GEIllSL~f 343 (364)
...+++.|.-.|..+...++|...+|....+.+....+ ++ +.+.+ +.. ..+|-|.++|.+
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~-~~-~vEL~G~~~e~kv~~GiL~l~lEL 149 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGST-SF-TVELCGVGPESKVPVGILDLRLEL 149 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCcc-ce-eEEEeccCCCCccceeEEEEEEEe
Confidence 45688888888877777899999999876665433211 22 22222 222 368999998877
No 138
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.41 E-value=0.74 Score=39.93 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=40.4
Q ss_pred eeecCC-CCCccceEEEEEe---ecCCCCeEEEEEEecCCCCCC----ceeEEEEeecccc
Q psy4890 259 NYVTNQ-INPYFGRHFEIQG---SFPTDAKLTVEIKDHDSVSKD----DYIGMTEMDLESR 311 (364)
Q Consensus 259 ~~i~~t-lnP~wne~Fef~v---~~p~~~~L~V~V~D~D~iskD----D~IGet~IdLenr 311 (364)
...+-+ .++.|++...|.+ .+|.++.|.|+||..+....+ ..||.+.++|-+.
T Consensus 25 ~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 25 SYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred cccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 334444 7999999999985 458899999999998876555 6999999998653
No 139
>KOG3837|consensus
Probab=90.76 E-value=0.33 Score=49.73 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=83.9
Q ss_pred eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeec-CC----------CC
Q psy4890 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSF-PT----------DA 283 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~-p~----------~~ 283 (364)
..-.+.+.|+++++++.....-..|-|+++... ....+++|+++..|-+|.|++.|-+.+.- |+ ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 445567888999888654322235778887642 35677788999999999999999998753 21 46
Q ss_pred eEEEEEEecCC-CCCCceeEEEEeeccccccccCCCccccccccccC-CC--CCceEEEEEEEEee
Q psy4890 284 KLTVEIKDHDS-VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV-SG--SSPGEVLPGITLQS 345 (364)
Q Consensus 284 ~L~V~V~D~D~-iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~-~G--~~~GEIllSL~fq~ 345 (364)
.++|+||+... +.+|.++|.+.|.|+-+- ..|.+ -..|.+ +| ..-|.+.+.+...+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Le-----n~cei-~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILE-----NMCEI-CEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhh-----cccch-hhceeccccccccCCeeEEEEEEec
Confidence 68999999865 457889999999987542 23444 223332 34 34577777766643
No 140
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.43 E-value=3.2 Score=34.29 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccccccCCCcc
Q psy4890 241 CDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320 (364)
Q Consensus 241 sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~ 320 (364)
++-.+++.+.+..... |.- +...+..|++.|.++.. ..+.|.|+||-.|- ..+.|-..+.||+. .|..
T Consensus 9 ~eV~avLklDn~~Vgq-T~W-k~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~---~~~~-- 76 (98)
T cd08687 9 SEVSAVLKLDNTVVGQ-TQW-KPKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDE---RHEV-- 76 (98)
T ss_pred cceEEEEEEcCeEEee-ccc-cccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhh---cccc--
Confidence 5677778777654432 222 23357899999998884 67899999998874 45788889999983 2322
Q ss_pred ccccccccCCCCCceEEEEEEEE
Q psy4890 321 ARWTSDLEVSGSSPGEVLPGITL 343 (364)
Q Consensus 321 gL~p~~y~~~G~~~GEIllSL~f 343 (364)
+..-..+|.+...+.|
T Consensus 77 -------~~~lepqg~l~~ev~f 92 (98)
T cd08687 77 -------QLDMEPQLCLVAELTF 92 (98)
T ss_pred -------eeccccccEEEEEEEe
Confidence 2233568889888888
No 141
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=89.68 E-value=5.3 Score=40.22 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=83.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeec-------CCCCeEEEEEEecC-
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSF-------PTDAKLTVEIKDHD- 293 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~-------p~~~~L~V~V~D~D- 293 (364)
|-|.|++|+|.+... .-.-.+..++.+....| ..++.+-.|.||.....++.- .+...++++.|-.|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~T--Dpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLET--DPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeee--cCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 447899999998762 23445666787777766 457889999999988888753 34778999999998
Q ss_pred CCCCCceeEEEEeeccccccccCCCccccccccccCCC------CCceEEEEEEEEeec
Q psy4890 294 SVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSG------SSPGEVLPGITLQSG 346 (364)
Q Consensus 294 ~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G------~~~GEIllSL~fq~g 346 (364)
.-++-+.||.+.+||-....+..+... ..+.||.+-+ ...-||+++|..+..
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~~-~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQK-QKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCCcceeccEEEEEccccccccccccc-cCCCeeEccccccccccCCccEEEEEEEecc
Confidence 556788999999999776332222111 2244554322 246789999999544
No 142
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.84 E-value=2.7 Score=38.44 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=52.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEe-eeeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecCCC
Q psy4890 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEI-NDRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHDSV 295 (364)
Q Consensus 222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~-~tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D~i 295 (364)
+||.|..+..+. .+.+....-||.+.+ |++.. ..+|.+.+.+-++.|||...|.+ .+|.++.|.|+||+...-
T Consensus 12 friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 12 FRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred EEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 456666665332 222222234555433 44322 22345666677899999988875 458899999999997321
Q ss_pred C----------------CCceeEEEEeeccc
Q psy4890 296 S----------------KDDYIGMTEMDLES 310 (364)
Q Consensus 296 s----------------kDD~IGet~IdLen 310 (364)
+ .+-.||-+.+.|-+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEc
Confidence 1 14467778888754
No 143
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.54 E-value=3.2 Score=34.03 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=43.9
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890 224 VYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD 293 (364)
Q Consensus 224 V~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D 293 (364)
+++....+.........++-||.+.+ |++... ..|.+++-...+.|||...|.+ .+|.+..|.|+||+..
T Consensus 15 ~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 15 ITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred EEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44455555444332222577787765 444332 1234555566799999988875 4588999999999964
No 144
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=78.82 E-value=15 Score=33.14 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=43.8
Q ss_pred ceeEEEEEEEEEecCCC-CCC-C-CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEe
Q psy4890 217 KVNVTIRVYIVRAYGLH-PKD-K-DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKD 291 (364)
Q Consensus 217 p~~~~LrV~Vv~A~dL~-p~D-~-~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D 291 (364)
.....|+|.+....+.. +.. . .+...+ .......+.+...+.+|.|++.|-+.+..+. ...|.+++++
T Consensus 26 ~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~-------~~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h 98 (184)
T PF14429_consen 26 ARNIEVTVELRDSDGNIKPLPCIYSRSSGP-------SFVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYH 98 (184)
T ss_dssp ---EEEEEEEEETTS--B--S-EE-TTS---------S-BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE
T ss_pred cccEEEEEEEEeCCCCccccceEECCCCCC-------CcceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEe
Confidence 46677888888866542 111 0 111110 0011112345567789999999999886544 6789999999
Q ss_pred cCCCCCC---ceeEEEEeeccc
Q psy4890 292 HDSVSKD---DYIGMTEMDLES 310 (364)
Q Consensus 292 ~D~iskD---D~IGet~IdLen 310 (364)
...-.+. ..+|-+.++|-+
T Consensus 99 ~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 99 VSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp ---SSSS-SS-EEEEEEEESB-
T ss_pred eccccccCccceeEEEEEEeee
Confidence 6543222 689999999865
No 145
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=77.75 E-value=20 Score=30.33 Aligned_cols=79 Identities=14% Similarity=0.229 Sum_probs=46.9
Q ss_pred cCCCCCCCCCCCCcEEEEEECCEEee-eeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC-CCCCceeEEEEee
Q psy4890 230 YGLHPKDKDGKCDPYIVLKTGSVEIN-DRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS-VSKDDYIGMTEMD 307 (364)
Q Consensus 230 ~dL~p~D~~G~sDPYV~I~Lg~~~~~-tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~-iskDD~IGet~Id 307 (364)
.++|.-+..|.+.||+.|.-+++... +...+......-.-.-.+.+....+...++.|.+|+... ...++.+.++.+.
T Consensus 14 ~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~~~Fn 93 (134)
T PF10409_consen 14 HGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKEKMFRFWFN 93 (134)
T ss_dssp ES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCEEEEEEEEE
T ss_pred ECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccCeEEEEEEe
Confidence 45565566778999999998877663 222111111111111244555445567889999999873 4467778887775
Q ss_pred c
Q psy4890 308 L 308 (364)
Q Consensus 308 L 308 (364)
-
T Consensus 94 T 94 (134)
T PF10409_consen 94 T 94 (134)
T ss_dssp G
T ss_pred e
Confidence 3
No 146
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=72.80 E-value=21 Score=31.97 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred CcEEEEEECCEE-eeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccc
Q psy4890 242 DPYIVLKTGSVE-INDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310 (364)
Q Consensus 242 DPYV~I~Lg~~~-~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLen 310 (364)
--|++|.+.++. ..|+.........-.||+.|.+.+.. -...|.|.||.... ..+.+|+++.+++-+
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPG 105 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence 346666666543 34444444455566788999999864 45678899999887 589999999999854
No 147
>KOG1327|consensus
Probab=70.09 E-value=17 Score=38.74 Aligned_cols=57 Identities=32% Similarity=0.520 Sum_probs=47.6
Q ss_pred eeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC----CCCCceeEEEEeecccccc
Q psy4890 257 RENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS----VSKDDYIGMTEMDLESRFY 313 (364)
Q Consensus 257 kt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~----iskDD~IGet~IdLenr~~ 313 (364)
++..+.+.+||.|-+.|.+...+.....|++.++|-+. ++.+||+|++...|.....
T Consensus 44 rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 44 RTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 56788999999999999988877778889999999764 3567899999999876653
No 148
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=68.05 E-value=54 Score=30.60 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred eeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCC-CCC---ceeEEEEeecc
Q psy4890 257 RENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSV-SKD---DYIGMTEMDLE 309 (364)
Q Consensus 257 kt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~i-skD---D~IGet~IdLe 309 (364)
++.+...+-+|.|+|++.+.++.. ....|.+++++...- .+| ..+|-+.++|-
T Consensus 56 ~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 56 KSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 334556788999999999988543 477899999875321 122 47999999984
No 149
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=63.56 E-value=57 Score=30.22 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=38.6
Q ss_pred eeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCC-C-ceeEEEEeecc
Q psy4890 257 RENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSK-D-DYIGMTEMDLE 309 (364)
Q Consensus 257 kt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~isk-D-D~IGet~IdLe 309 (364)
++.+...+-+|.|+|++.+.++.. ....|.+++++...-.+ + ..+|-+.++|-
T Consensus 56 ~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 56 RSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred EEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 345567888999999999988543 36788898887543211 2 57999999984
No 150
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=46.49 E-value=2.1e+02 Score=25.42 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCCCccceEEEEEeec--CC-CCeEEEEEEecCCCCCCceeEEEEeec
Q psy4890 264 QINPYFGRHFEIQGSF--PT-DAKLTVEIKDHDSVSKDDYIGMTEMDL 308 (364)
Q Consensus 264 tlnP~wne~Fef~v~~--p~-~~~L~V~V~D~D~iskDD~IGet~IdL 308 (364)
+-.-.||-.|++.... +. =+.|.|+||..|..+++...|-..+.|
T Consensus 54 ~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 54 DDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 4456799888887643 33 378999999999999999987665554
No 151
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=45.54 E-value=63 Score=29.01 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=37.4
Q ss_pred cCCCCCccceEEEEEeecC--CCCeEEEEEEecCCC-----CCCceeEEEEeeccc
Q psy4890 262 TNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSV-----SKDDYIGMTEMDLES 310 (364)
Q Consensus 262 ~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~i-----skDD~IGet~IdLen 310 (364)
....+|.|++.|-+.++.. ....|.+++++-+.- .....+|-+.++|-+
T Consensus 60 ~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 60 YYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3448999999999988543 377899999986532 235689999999965
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=43.78 E-value=2.6e+02 Score=25.62 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=38.0
Q ss_pred eeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCC------CceeEEEEeecc
Q psy4890 258 ENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSK------DDYIGMTEMDLE 309 (364)
Q Consensus 258 t~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~isk------DD~IGet~IdLe 309 (364)
+.+...+-+|.|++.+-+.+..+ ....|.+++++-+.-.+ ...+|-+.++|-
T Consensus 58 S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 58 TAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred EEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 34566788999999988887543 46789999998543211 346999999983
No 153
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=43.53 E-value=47 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.9
Q ss_pred CCeEEEEEEecCCCCCCceeEEEEeeccccc
Q psy4890 282 DAKLTVEIKDHDSVSKDDYIGMTEMDLESRF 312 (364)
Q Consensus 282 ~~~L~V~V~D~D~iskDD~IGet~IdLenr~ 312 (364)
....+|++||.|.+..||+++++..+-.-.|
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F 41 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTDSDGNF 41 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEECCCceE
Confidence 4456699999998889999999988765443
No 154
>KOG1452|consensus
Probab=43.30 E-value=50 Score=33.26 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=53.6
Q ss_pred eeEEEEEEEEEecCCCCCC--CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890 218 VNVTIRVYIVRAYGLHPKD--KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV 295 (364)
Q Consensus 218 ~~~~LrV~Vv~A~dL~p~D--~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i 295 (364)
...++-++++.++||.-.. ..-..+-|+++....+ ...+|.+.....--.|.+.|++.+. ....+.+-||.|+.-
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drq-h~aRt~vrs~~~~f~w~e~F~~Dvv--~~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQ-HPARTRVRSSGPGFAWAEDFKHDVV--NIEVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeeccc-CccccccccCCCCccchhhceeecc--cceeeeEEEeecCch
Confidence 4456778899999986432 2334688999876543 2344455556666788899998874 356677888888765
Q ss_pred CCCce
Q psy4890 296 SKDDY 300 (364)
Q Consensus 296 skDD~ 300 (364)
.++.+
T Consensus 126 ~RHKL 130 (442)
T KOG1452|consen 126 RRHKL 130 (442)
T ss_pred hhccc
Confidence 44443
No 155
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=43.21 E-value=77 Score=26.53 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=41.4
Q ss_pred ecCCCCCccceEEEEEeecC-------CCCeEEEEEEecCCCCCCceeEEEEeeccccccccCCCccccccccccCCCCC
Q psy4890 261 VTNQINPYFGRHFEIQGSFP-------TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSS 333 (364)
Q Consensus 261 i~~tlnP~wne~Fef~v~~p-------~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~ 333 (364)
+-.+.+|.+|-+-.+.+... +...+.|+++..-. .....||.+.|+|...+-+....-.+- ......+|..
T Consensus 17 vv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~-~~l~g~~~~~ 94 (107)
T PF11618_consen 17 VVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGS-ATLVGVSGED 94 (107)
T ss_dssp -EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEE-EEE-BSSS-T
T ss_pred ceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEE-EEEeccCCCe
Confidence 34588999998877776532 26778899988652 235789999999998774432111111 1223456667
Q ss_pred ceEEEEEEEE
Q psy4890 334 PGEVLPGITL 343 (364)
Q Consensus 334 ~GEIllSL~f 343 (364)
-|.|...+.+
T Consensus 95 ~g~l~y~~rl 104 (107)
T PF11618_consen 95 FGTLEYWIRL 104 (107)
T ss_dssp SEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 8888777665
No 156
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=37.45 E-value=3.3e+02 Score=25.06 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=38.2
Q ss_pred eeeecCCCCCccceEEEEEeec--CCCCeEEEEEEecCCC--C-------CCceeEEEEeeccc
Q psy4890 258 ENYVTNQINPYFGRHFEIQGSF--PTDAKLTVEIKDHDSV--S-------KDDYIGMTEMDLES 310 (364)
Q Consensus 258 t~~i~~tlnP~wne~Fef~v~~--p~~~~L~V~V~D~D~i--s-------kDD~IGet~IdLen 310 (364)
+.+...+-+|.|++.+-+.+.. .....|.++.++-+-- . ....+|-+.++|-.
T Consensus 60 s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 60 AAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3556677899999988887754 3467899999996521 1 13468999999843
No 157
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=34.19 E-value=3.6e+02 Score=27.72 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=57.0
Q ss_pred CCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeec-CCCCeEEEEEEecCCCCCCceeEEEEeeccccccccCCC
Q psy4890 240 KCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSF-PTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRG 318 (364)
Q Consensus 240 ~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~-p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a 318 (364)
....|+.++.|+....|.. ++-+-.-.-+=.-...+.. ..+..|+|.+|-.... +..-||.+.|++..-... +
T Consensus 73 ~khiyIef~~Gr~d~TT~~--IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~dIId---k 146 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDE--IPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINASVIS---K 146 (508)
T ss_pred ceeEEEEEEcCceEEEccc--cccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccHHHHh---c
Confidence 4567889988877665522 2222221111111122222 3478899999998765 678899999999754433 1
Q ss_pred cccccccccc--CCCCCceEEEEEEE
Q psy4890 319 SCARWTSDLE--VSGSSPGEVLPGIT 342 (364)
Q Consensus 319 ~~gL~p~~y~--~~G~~~GEIllSL~ 342 (364)
.|+= -+||. ..|..++.|.+|+.
T Consensus 147 ~FPK-nkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 147 SFPK-NEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred cCCc-cceEEEecCCceeeeEEEEeh
Confidence 2211 23343 26888999999863
Done!