RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4890
(364 letters)
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 74.0 bits (182), Expect = 4e-16
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 7/146 (4%)
Query: 205 SNGALQESIDNEKVNV-TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTN 263
+ + ++ N +RV ++ GL KD G DPY+ + + T
Sbjct: 4 TCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTK 63
Query: 264 QI----NPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
I NP + + P +L E+ D + +++DD++G ++ L R
Sbjct: 64 TIKKSLNPKWNEEILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLE 122
Query: 320 CARWTSDLEVSGSSPGEVLPG-ITLQ 344
D + S + G + L+
Sbjct: 123 RPYTFKDFVLHPRSHKSRVKGYLRLK 148
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 69.3 bits (170), Expect = 1e-14
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-INPYFGRHFEIQGSF 279
T+ V +V A GL D DPY+ L + + + N P + F S
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWNETFIFTVSE 68
Query: 280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
T +L +I D D ++DD +G + LE
Sbjct: 69 GTT-ELKAKIFDKDVGTEDDAVGEATIPLEP 98
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 70.3 bits (172), Expect = 1e-14
Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 5/136 (3%)
Query: 205 SNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ 264
+G+ S+ + + +++ ++ A K PY+ + + N
Sbjct: 21 DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNT 78
Query: 265 INPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWT 324
+P + + + +KL + H ++ D +G +D+ +
Sbjct: 79 NSPKWKQPLTV--IVTPVSKLHFRVWSHQTLKSDVLLGTAALDI-YETLKSNNMKLEEVV 135
Query: 325 SDLEVSGSSPGEVLPG 340
L++ G G
Sbjct: 136 VTLQLGGDKEPTETIG 151
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 68.9 bits (169), Expect = 2e-14
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
++V +++A L D GK DP+ +L+ G+ + + + V +NP + + F
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL--QTHTVYKNLNPEWNKVFTFPIKDI 71
Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
D L V + D D D++G + L S
Sbjct: 72 HD-VLEVTVFDEDGDKPPDFLGKVAIPLLS 100
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 68.0 bits (166), Expect = 8e-14
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI----NPYFGRHFEIQ 276
+RV ++ GL KD G DPY+ + + T I NP + +
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGE 336
P ++ E+ D + +++DD++G ++ L R D + S
Sbjct: 69 VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127
Query: 337 VLPG 340
+ G
Sbjct: 128 RVKG 131
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 63.7 bits (155), Expect = 1e-12
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 16/123 (13%)
Query: 221 TIRVYIVRAYGLHPKD-----------KDGKCDPYIVLKTGSVEINDRENYVTNQINPYF 269
+++ I A L P + DPYI L I + +P +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI-GQTATKQKTNSPAW 65
Query: 270 GRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV 329
F K+ + + + DD++ + E W DLE
Sbjct: 66 HDEFVT--DVCNGRKIELAVFHDAPIGYDDFVANCTIQFEE-LLQNGSRHFEDWI-DLEP 121
Query: 330 SGS 332
G
Sbjct: 122 EGK 124
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 63.8 bits (155), Expect = 2e-12
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 221 TIRVYIVRAYGLHPKDKDGK----------CDPYIVLKTGSVEINDRENYVTNQINPYFG 270
+RV I A GL P + DPY+ + V + + + P +
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVG-QTSTKQKTNKPTYN 88
Query: 271 RHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES-RFYSRHRGSCARWTSDLEV 329
F L + + + D ++ + + + + W DLE
Sbjct: 89 EEFCAN--VTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWV-DLEP 145
Query: 330 SGS 332
G
Sbjct: 146 EGK 148
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 61.7 bits (150), Expect = 7e-12
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
+RV + A + PK K GK DP + + + + V N++NP + E
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKK--KTKKVDNELNPVWNEILEFDLRGI 64
Query: 281 ---TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+ L + +KD +++ ++ IG + L+
Sbjct: 65 PLDFSSSLGIIVKDFETIGQNKLIGTATVALKD 97
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 59.7 bits (145), Expect = 3e-11
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
GAL+ S+ ++ N ++ I+RA GL P D +G DPY + L G+ + N + N
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
NP + + G D + L + + D D +++IG T L+
Sbjct: 76 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 61.7 bits (150), Expect = 6e-11
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY-----V 261
G LQ S+D + N + V I++A L D G DPY+ + + D++
Sbjct: 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL----LPDKKKKFETKVH 61
Query: 262 TNQINPYFGRHF--EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
+NP F F ++ S L + + D D SK D IG ++ + + +
Sbjct: 62 RKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Query: 320 CARWTSDLEVSGSSPGEVLPGITLQS 345
S + G++ +
Sbjct: 122 WRDLQSAEKEEQEKLGDICFSLRYVP 147
Score = 50.2 bits (120), Expect = 3e-07
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGR--HFEIQ 276
+ V I+ A L D G DPY I L + ++ N +NPY+ FE+
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
++ V + D+D + K+D IG + S
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 58.7 bits (142), Expect = 8e-11
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
I + +V A GL KDK G DPY+ ++ G + R + +NP + +F + +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKK--RTKTIYGNLNPVWEENFHFECHNSS 76
Query: 282 DAKLTVEIKDHD-----------SVSKDDYIGMTEMDLES 310
D ++ V + D D DD++G T +++ +
Sbjct: 77 D-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT 115
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 58.1 bits (141), Expect = 1e-10
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
G LQ S+D + N + V I++A L D G DPY+ + + D++
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL----LPDKKKKFETKVH 76
Query: 262 TNQINPYFGRHFE--IQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+NP F F + S L + + D D SK D IG ++ + +
Sbjct: 77 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 58.2 bits (141), Expect = 1e-10
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
G LQ S+D + N + V I++A L D G DPY+ + + D++
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL----LPDKKKKFETKVH 84
Query: 262 TNQINPYFGRHFE--IQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+NP F F + S L + + D D SK D IG ++ + +
Sbjct: 85 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 57.3 bits (139), Expect = 2e-10
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQG 277
+ V + A L P D +G DPY + L + ++ + + +NP + F +
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 278 SF-PTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
D +L+VEI D D +++D++G +
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE 110
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI----NPYFGRHFEIQG 277
IR+ ++ A L KD DP+ + + + T+ + +P + +H+++
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVD----GSGQCHSTDTVKNTLDPKWNQHYDLYV 62
Query: 278 SFPTDAKLTVEIKDHDSVSKDD---YIGMTEMDLES 310
+T+ + +H + K ++G + +
Sbjct: 63 GKTD--SITISVWNHKKIHKKQGAGFLGCVRLLSNA 96
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 57.0 bits (138), Expect = 3e-10
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQG 277
+ V + A L P D +G DPY + L + ++ + +NP + F Q
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 278 SFP-TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
D +L+VEI D D S++D++G +
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 56.6 bits (137), Expect = 3e-10
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 223 RVYIVRAYGLH---PKDKDGKCDPYIVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGS 278
V ++RA + D DPY+ L + + + + N INP + FE
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 65
Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+ L + + D + D+ +G + S
Sbjct: 66 PNQENVLEITLMDAN-YVMDETLGTATFTVSS 96
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 56.6 bits (137), Expect = 3e-10
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
G +Q S+ T+ V I++A L KD G DP++ + + D+++
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVK 68
Query: 262 TNQINPYFGRHFEIQGSFPTDA---KLTVEIKDHDSVSKDDYIGMTEMDLES 310
+NP++ F +G L +++ D+D S++D IG + L
Sbjct: 69 RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNK 120
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 53.2 bits (128), Expect = 6e-09
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 223 RVYIVRAYGLHPKDKDGKCDPYIVL------------KTGSVEINDRENYVTNQINPYFG 270
++I++A L P+D +G DP++ + + S E R YV +NP +
Sbjct: 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80
Query: 271 RHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
+ + L V + D+D S +D++G +DL S
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 54.5 bits (131), Expect = 1e-08
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 12/147 (8%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
G + ++ + + V I++A L KD +G DPY+ + + DR+
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYL----LPDRKKKFQTKVH 62
Query: 262 TNQINPYFGRHFEIQGSF--PTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
+NP F F+ KL + D D S+ D IG +D +
Sbjct: 63 RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDR 122
Query: 320 CA-RWTSDLEVSGSSPGEVLPGITLQS 345
R + + GE+ +
Sbjct: 123 PLWRDILEGGSEKADLGELNFSLCYLP 149
Score = 54.1 bits (130), Expect = 2e-08
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 195 HLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEI 254
++ + G L S+ + V I++A L D G DPY+ S+
Sbjct: 127 DILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKA---SLIS 183
Query: 255 NDRENY------VTNQINPYFGR--HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEM 306
R N +NP + F++ + L++ + D+D + ++ IG+ +
Sbjct: 184 EGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Query: 307 DLES 310
E+
Sbjct: 244 GPEA 247
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 51.6 bits (124), Expect = 2e-08
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGK-CDPYIVLKTGSVEINDREN-----Y 260
G L S++ V I A GL D+ DPYI + + ++++
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI----LPEKKHKVKTRV 64
Query: 261 VTNQINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
+ ++P F F G T + L I D S+DD IG + L
Sbjct: 65 LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 52.0 bits (125), Expect = 2e-08
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK----TGSVEINDRENYVT 262
+Q ++ ++ N + I++ L + I + + S R +
Sbjct: 30 TRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD 89
Query: 263 NQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDL 308
F F + S+P L V++ D ++ +G ++ L
Sbjct: 90 ASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISL 137
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 52.0 bits (125), Expect = 2e-08
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGR--HFEIQ 276
+ V I+ A L D G DPY+ +++ G + N +NPY+ FE+
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
++ V + D+D + K+D IG + S
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 50.4 bits (121), Expect = 6e-08
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 205 SNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY---- 260
S G L S+ +I V I++A L D G DPY+ + + +
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVW----LMYKDKRVEKKK 56
Query: 261 ---VTNQINPYFGR--HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
+NP F F+I + + + + D D +S++D IG + +S
Sbjct: 57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 50.0 bits (120), Expect = 7e-08
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN------Y 260
L +D + + V + A + DG CD Y+ N +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSV----ANRTGSVEAQTAL 65
Query: 261 VTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
Q++ + + + A LT+ ++ D S+ G + L+
Sbjct: 66 KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 49.7 bits (119), Expect = 1e-07
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 200 SGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDR 257
G P G L S+ + T+ V +++A L D G DPY + L I+ +
Sbjct: 10 GGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK 69
Query: 258 E-NYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
+ + N F F + + + + D + S+++ IG + +
Sbjct: 70 KTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 49.7 bits (119), Expect = 1e-07
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKD-KDGKCDPY--IVLKTGSVEINDRE-NYVT 262
G + S+ E+ ++ V++ + L D + +PY L R+ +
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 263 NQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+ +NP + + L + H ++ ++G E+ ++S
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 49.3 bits (118), Expect = 2e-07
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 224 VYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGSFP 280
V I+R L D +G DP+ + LK + + +NP F F
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 281 T--DAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
L + + D+D +DYIG ++ + ++
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 48.1 bits (115), Expect = 3e-07
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 224 VYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGSFP 280
+ ++ L +D +PY L + + + R+ NP F G
Sbjct: 24 IMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK 82
Query: 281 TDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
+ L + + +S+ ++ ++G + L+
Sbjct: 83 ETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 48.1 bits (115), Expect = 3e-07
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
G L + +KV + V I+ A L ++ +PY I + N R V
Sbjct: 8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKD--DYIGMTEMDLES 310
+ P + + F + + L + + D V ++ +++G ++LE+
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 119
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 47.7 bits (114), Expect = 4e-07
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
G L + +KV + V I+ A L ++ +PY I + N R V
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKD--DYIGMTEMDLES 310
+ P + + F + + L + + D V ++ +++G ++LE+
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 116
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 46.6 bits (111), Expect = 1e-06
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 200 SGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHP-------KDKDGKCDPYIVLKTGSV 252
SG G L S + ++ + V ++ A L P + +PY+ +
Sbjct: 6 SGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL--- 62
Query: 253 EINDRENY-----VTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTE 305
+ D++N P F + + F L + + D D S+ IG
Sbjct: 63 -LPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
Query: 306 MDLES 310
+ L
Sbjct: 122 VPLCE 126
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 46.6 bits (111), Expect = 1e-06
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
G +Q +I + + V + L +DG DPY + L R+ +
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 264 QINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDD--YIGMTEMDLES 310
+NP F + F+ S P L V +K+ D +G + L S
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALAS 120
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 48.4 bits (114), Expect = 2e-06
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 223 RVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP-T 281
V RA L D Y+ + G E R V N NP + + + T
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEF--RTGVVWNNNNPRWTDKMDFENVLLST 453
Query: 282 DAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
L V++ D D DD +G + S
Sbjct: 454 GGPLRVQVWDADYGWDDDLLGSCDRSPHSG 483
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 48.4 bits (114), Expect = 2e-06
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 223 RVYIVRAYGLH---PKDKDGKCDPYIVLKTGSVEIND-RENYVTNQINPYFGRHFEIQGS 278
V ++RA + D DPY+ L + + R + N INP + FE
Sbjct: 21 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 80
Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARW 323
+ L + + D + V D+ +G + S + +
Sbjct: 81 PNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 8e-06
Identities = 42/242 (17%), Positives = 74/242 (30%), Gaps = 62/242 (25%)
Query: 11 LKLPERKQNFNICS-------IPYLVLTLLQILLWTGKK-------LFLFAMYCVCGYNR 56
L+ E ++ F+ S IP ++L+L+ W + Y + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLV--EK 419
Query: 57 TVKIRARYYKLIELEEKPSGSNVY-------DTFTIPEVDTDEEEKPDWWSLYYSS--VY 107
K I LE K N Y D + IP+ ++ P + Y+ S +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 108 SSGVVEKIQQIQRENE-----------ERKTIRLCKCCNIVPPKNELELVPEFEHFADVL 156
++ I+ +R E+K N + L
Sbjct: 480 H---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS------------ILNTL 524
Query: 157 QTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNE 216
Q F Y +N E V + F P ++L+ L AL ++E
Sbjct: 525 QQLKF-YKPYICDNDPKY-ERLVNAILD---FLPKIEENLICSKYTDLLRIALMA--EDE 577
Query: 217 KV 218
+
Sbjct: 578 AI 579
Score = 45.6 bits (107), Expect = 2e-05
Identities = 64/417 (15%), Positives = 119/417 (28%), Gaps = 130/417 (31%)
Query: 10 WLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGY-NRTVKIRARYYKLI 68
WL N C+ P VL +LQ LL+ + R I+A +L+
Sbjct: 186 WL-------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 69 ELEEKPSG----SNVYDTFTIPEVD--------TDEEEKPDWWSLYYSSVYSSGVVEKIQ 116
+ + + NV + + T + V
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----------FKQVTDFLSAATTT 287
Query: 117 QIQREN-----EERKTIRLC-KCCNIVP---PKNELELVPEF-----EHFADVLQTFDFY 162
I ++ + L K + P P+ L P E D L T+D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-N 346
Query: 163 YGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVT 221
+ + + T+ E + + PA+ R S + ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLS------------VFPPSAHIP 388
Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIV---LKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
+ + + D +V K VE +E+ ++ + E++
Sbjct: 389 TIL-LSLIWF----DVIKSDVMVVVNKLHKYSLVEKQPKESTIS-----IPSIYLELKVK 438
Query: 279 FPTDAKLTVEIKDHDSVSK------------DDYI-----------GMTEMD-------L 308
+ L I DH ++ K D Y E L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 309 ESRFYS---RHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTD 362
+ RF RH + + ++ G +L TLQ +++++ Y+ D
Sbjct: 499 DFRFLEQKIRHDST----------AWNASGSILN--TLQQ-------LKFYKPYICD 536
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 43/265 (16%), Positives = 76/265 (28%), Gaps = 94/265 (35%)
Query: 138 PPKNELELVPEF-------------EHFADVLQT----FDFYYGKLFSNNKNTLAEMKVG 180
P ELV +F F VL F+ Y L N+ + LA +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQ 110
Query: 181 SFKGNVM--------FYPADRDHLVTFSGKPLSNG---ALQESIDNEKVNVTIRVYIVRA 229
++ + A + +P AL ++ ++ +
Sbjct: 111 ENDTTLVKTKELIKNYITA-----RIMAKRPFDKKSNSALFRAVGEGNA----QLVAI-- 159
Query: 230 YGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ--INPYFGRHFEIQGSF---PTDAK 284
+G G D Y + E+ R+ Y T + E DA+
Sbjct: 160 FG-----GQGNTDDY--FE----EL--RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 285 ------LTVE--IKDHDSVSKDDY----------IGMTEMDLESRFYSRHRGSCARWTSD 326
L + +++ + DY IG+ A +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI--------------QLAHYVVT 252
Query: 327 LEVSGSSPGEV---LPGITLQSGEI 348
++ G +PGE+ L G T S +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGL 277
Score = 46.2 bits (109), Expect = 2e-05
Identities = 62/411 (15%), Positives = 121/411 (29%), Gaps = 157/411 (38%)
Query: 60 IRARYYKLIELEEKP--------------SGS-NVYDTFT---IPEVDTDEEEKPDWW-- 99
I+ Y + ++P G+ + F + D++
Sbjct: 123 IKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---------DYFEE 172
Query: 100 --SLYYSSVYSSGV-------VEKIQQIQRENEERKTIRLCKCCNIV---------PPKN 141
LY Y V E + ++ R + + + + NI+ P K+
Sbjct: 173 LRDLY--QTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKD 229
Query: 142 ELELVP---------EFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVG------------ 180
L +P + H+ + F G+L S K + G
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDS 288
Query: 181 --SFKGN------VMFYPADRDHLVTFSGKPLSNGALQESIDNEK------VNVT----- 221
SF + V+F+ R + + L L++S++N + ++++
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 222 -IRVYI--VRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV----------------- 261
++ Y+ ++ P K I L +N +N V
Sbjct: 348 QVQDYVNKTNSHL--PAGKQV----EISL------VNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 262 ------TNQIN-PYFGRHFEIQGSF-PTDA-------KLTVEIKDHDSVSKDDYIGMTEM 306
+Q P+ R + F P + ++ + D V + +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN--VSFNAK 453
Query: 307 DLESRFYSRHRGSCARWTSDL-EVSGSSPGEVLPGITLQSGEINSDPVRYW 356
D++ Y G SDL +SGS ++ I PV W
Sbjct: 454 DIQIPVYDTFDG------SDLRVLSGSISERIVDCII-------RLPV-KW 490
Score = 37.3 bits (86), Expect = 0.008
Identities = 52/314 (16%), Positives = 83/314 (26%), Gaps = 148/314 (47%)
Query: 76 GSNVYDTFTIPEVDT--DEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKT------ 127
G ++Y T + + ++ Y G I I N T
Sbjct: 1632 GMDLYKTS--KAAQDVWNRADN------HFKDTY--GF--SILDIVINNPVNLTIHFGGE 1679
Query: 128 ----IR--------------LCKCCNIVPPKNELELVPEFEHFADVL-QTFDFYYGKLFS 168
IR K I NE F +L T
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---------- 1729
Query: 169 NNKNT-----------LAEMKV-GSFKGNVMF-------YPADRDHLVTFSGKPLSNGAL 209
+ T ++K G + F Y A L + + +
Sbjct: 1730 --QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA----LASLA------DVM 1777
Query: 210 QESIDNEKVNVTIRVYIVRAYGLH-----PKDKDGK-------CDP-------------Y 244
SI++ + +V G+ P+D+ G+ +P Y
Sbjct: 1778 --SIES-----LVE--VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 245 IV----LKTGS-VEI-NDREN-----YV-----------TNQINPYFGRH----FEIQGS 278
+V +TG VEI N N YV TN +N + E+Q S
Sbjct: 1829 VVERVGKRTGWLVEIVNY--NVENQQYVAAGDLRALDTVTNVLN-FIKLQKIDIIELQKS 1885
Query: 279 FPTDAKLTVEIKDH 292
+ E++ H
Sbjct: 1886 LSLE-----EVEGH 1894
Score = 35.0 bits (80), Expect = 0.043
Identities = 42/274 (15%), Positives = 77/274 (28%), Gaps = 106/274 (38%)
Query: 6 YLNAWLKLPERKQ----------NFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYN 55
N+ LP KQ N + P L L + L +K G +
Sbjct: 355 KTNS--HLPAGKQVEISLVNGAKNLVVSG-PPQSLYGLNLTL---RKAK-----APSGLD 403
Query: 56 RTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKI 115
++ +I E K SN + P ++S + I
Sbjct: 404 QS-RIPFS-------ERKLKFSNRFLPVASP---------------FHSH-LLVPASDLI 439
Query: 116 QQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLA 175
++ + + +++ +P V TFD G +++
Sbjct: 440 N----KDLVKNNVSF--------NAKDIQ-IP-------VYDTFD---GSDLRVLSGSIS 476
Query: 176 EMKVGSFKGNVMFYPADRD--------HLVTF-SGKPLSNGALQESIDNEKVNVTIRVYI 226
E V ++ P + H++ F G G L T R
Sbjct: 477 ERIVDC----IIRLPVKWETTTQFKATHILDFGPGGASGLGVL-----------THR--N 519
Query: 227 VRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
G+ V+ G+++IN ++Y
Sbjct: 520 KDGTGVR------------VIVAGTLDINPDDDY 541
Score = 31.9 bits (72), Expect = 0.43
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 22/62 (35%)
Query: 4 GHYLN--AWLKLPERK--QNFNICSIPY-LVL-TLLQILLWTGKKLFLFAMYCV-C---G 53
LN WL+ P +++ + SIP L ++Q A Y V G
Sbjct: 210 TQGLNILEWLENPSNTPDKDY-LLSIPISCPLIGVIQ-----------LAHYVVTAKLLG 257
Query: 54 YN 55
+
Sbjct: 258 FT 259
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 43.2 bits (102), Expect = 3e-05
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 221 TIRVYIVRAYGLHPKD-KDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQ 276
+ V ++RA L K PY+ +L+ G+ + ++P + +
Sbjct: 31 QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
Query: 277 GSFPTDAKLTVEIK-DHDSVSKDDYIGMTEMDLES 310
S P L V + D+ + ++G+ ++ LE
Sbjct: 91 ES-PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 38.0 bits (88), Expect = 8e-04
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDA 283
V + +A ++K + Y+ LK +V+ P + + F + + D
Sbjct: 9 VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI---AVRGSQPSWEQDFMFEIN-RLDL 61
Query: 284 KLTVEIKDHDSVSKDDYIGMTEMDLESRFYS 314
LTVE+ + + D +G + L + S
Sbjct: 62 GLTVEVWNKGLI-WDTMVGTVWIPLRTIRQS 91
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 35.4 bits (80), Expect = 0.032
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 214 DNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY--VTNQINPYFGR 271
++ +V+ ++++I+ A L PK Y L + + + ++G
Sbjct: 5 NSRRVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGE 59
Query: 272 HFEIQGSFPTDAKLTVEIKDHDSV---SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLE 328
HFE A +D D K Y+G+ + + + R +W
Sbjct: 60 HFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL---AGRHFTEQWYPVTL 116
Query: 329 VSGSSPGEVLPGITLQSGEINSDP 352
+GS + S
Sbjct: 117 PTGSGGSGGMGSGGGGGSGGGSGG 140
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 35.3 bits (80), Expect = 0.035
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 217 KVNVTIRVYIVRAYGLHPKD--KDGKCDPYIVLKTGSVEINDRENYVT-----NQINPYF 269
+RV I+ L + K+ DP ++++ V D + T N NP +
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVG-RDTGSRQTAVITNNGFNPRW 552
Query: 270 GRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMT 304
FE + + P A + ++D+DS SK+D+IG +
Sbjct: 553 DMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQS 587
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 31.4 bits (71), Expect = 0.56
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 47 AMYCVCGYNRTVKI------------RARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEE 94
A+ C GYN+ + R+ +++ +EK G ++ +TF P
Sbjct: 826 AIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKP----QRTN 881
Query: 95 KPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFAD 154
Y + G++ ++ + + + K I P + EL + D
Sbjct: 882 TLRMKHGTYDKLDDDGLIAPGVRV-----SGEDVIIGKTTPISPDEEELGQRTAYHSKRD 936
Query: 155 V 155
Sbjct: 937 A 937
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 30.6 bits (69), Expect = 0.94
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 21/121 (17%)
Query: 47 AMYCVCGYNRTVKI------------RARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEE 94
A+ C GYN+ I R+ +Y+ +EK G V + F P T
Sbjct: 815 AILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRM 874
Query: 95 KPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFAD 154
K Y + G++ ++ + I + K I EL + D
Sbjct: 875 KHG----TYDKLEDDGLIAPGTRV-----SGEDIIIGKTAPIPLDHEELGQRTQLHAKRD 925
Query: 155 V 155
V
Sbjct: 926 V 926
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.0
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 59 KIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKIQQI 118
K R K L+E + S V + + D E +W V EK +
Sbjct: 89 KWREEQRK--RLQELDAASKVMEQEWREKAKKDLE---EWNQRQSEQV------EKNKIN 137
Query: 119 QRENEE 124
R ++
Sbjct: 138 NRIADK 143
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 27.9 bits (62), Expect = 6.4
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 61 RARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSL 101
R+ +++L EE D +PE + +++ L
Sbjct: 754 RSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRL 794
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 26.6 bits (58), Expect = 7.3
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 95 KPDWWSLYYSSVYSSGVVE---KIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEH 151
+ SLY S + +E ++ +R RK IRL C + E +
Sbjct: 31 RRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEAS--SPRDT 88
Query: 152 FADVLQTFDFYYGKLFSNNKNTLAE 176
A L+T + Y L + +
Sbjct: 89 SAFFLETKERLY--LLAAPAAERGD 111
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 9.3
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 116 QQIQRENEERKT----IRL-CKCCNIVPPKNELELVPEFEH 151
++ + R+ I L C C + PP ++V F
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPP----KIVERFSE 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,789,634
Number of extensions: 342538
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 57
Length of query: 364
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,049,298
Effective search space: 1089261162
Effective search space used: 1089261162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)