RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4890
(364 letters)
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 65.5 bits (159), Expect = 1e-13
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQINPYFGRHFEIQG 277
+ V + A L P D +G DPY+ LK E + + +NP + F Q
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75
Query: 278 SFP-TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
D +L+VEI D D S++D++G +
Sbjct: 76 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 109
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 63.6 bits (154), Expect = 4e-13
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV-TNQI 265
G LQ S+D + N + V I++A L D G DPY+ + + E V +
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80
Query: 266 NPYFGRH--FEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
NP F F++ S L + + D D SK D IG ++ + +
Sbjct: 81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 61.6 bits (149), Expect = 2e-12
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTN 263
G L + +KV + V I+ A L ++ +PY+ L S + R V
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 264 QINPYFGRHFEIQGSFPTD---AKLTVEIKDHDSVSKD--DYIGMTEMDLES 310
+ P + + F + L + + D V ++ +++G ++LE+
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 112
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 60.5 bits (146), Expect = 5e-12
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 5/118 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
T+ V +V A GL D DPY+ L + + P + F S
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT-TPEWNETFIFTVS-E 68
Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVL 338
+L +I D D ++DD +G + LE F GS ++ GE+
Sbjct: 69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE---GSIPPTAYNVVKDEEYKGEIW 123
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 59.1 bits (142), Expect = 3e-11
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIV---LKTGSVEINDRENYVTN 263
G + S+ + V I+ A L D G DPY+ ++ G + N
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 264 QINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+NPY+ F + F ++ V + D+D + K+D IG + S
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 58.2 bits (140), Expect = 3e-11
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 220 VTIRVYIVRAYGLHPKDKD--GKCDPYIVLKTGSVEINDRENYVT----NQINPYFGRHF 273
+RV I+ L +K+ DP ++++ V + N NP + F
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 274 EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRH 316
E + + P A + ++D+DS SK+D+IG + + S
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 106
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 56.4 bits (135), Expect = 2e-10
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV----- 261
G L S+ + V I++A L D G DPY+ S ++
Sbjct: 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66
Query: 262 TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
T F++ + L++ + D+D + ++ IG+ + E+
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA 115
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 55.6 bits (133), Expect = 2e-10
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
++V +++A L D GK DP+ +L+ G+ + Y +NP + + F
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY--KNLNPEWNKVFTFPIKDI 64
Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
D V + D D D++G + L S
Sbjct: 65 HDVL-EVTVFDEDGDKPPDFLGKVAIPLLS 93
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 55.5 bits (133), Expect = 3e-10
Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 5/120 (4%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
+++ ++ A K PY+ + + N +P + + + +
Sbjct: 7 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNTNSPKWKQPLTVIVTPV 64
Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPG 340
+ + H ++ D +G +D+ + L++ G G
Sbjct: 65 SKLHF--RVWSHQTLKSDVLLGTAALDI-YETLKSNNMKLEEVVVTLQLGGDKEPTETIG 121
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 54.7 bits (131), Expect = 6e-10
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGK-CDPYIVLKTGSVEINDRE-NYVTNQ 264
G L S++ V I A GL D+ DPYI + + + + +
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT 68
Query: 265 INPYFGRHFEIQGSFPTD---AKLTVEIKDHDSVSKDDYIGMTEMDLES 310
++P F F G T L I D S+DD IG + L
Sbjct: 69 LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 54.9 bits (131), Expect = 7e-10
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVL------------KTGSVEINDRENYVTNQINPY 268
+ ++I++A L P+D +G DP++ + + S E R YV +NP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 269 FGRHF---EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+ + I L V + D+D S +D++G +DL S
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 54.7 bits (131), Expect = 7e-10
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEIND---RENYVTN 263
G L S+ + T+ V +++A L D G DPY+ + + + +
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 264 QINPYFGRHFEIQGSFPTDA--KLTVEIKDHDSVSKDDYIGMTEMDLESR 311
N F F + + + D + S+++ IG + +
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 53.8 bits (128), Expect = 1e-09
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 7/134 (5%)
Query: 201 GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
G P G + ++ + + V I++A L KD +G DPY+ + +
Sbjct: 1 GAPC--GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 58
Query: 261 V---TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHR 317
V T F + + KL + D D S+ D IG +D +
Sbjct: 59 VHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP 118
Query: 318 GSCARWTSDLEVSG 331
W D+ G
Sbjct: 119 DR-PLW-RDILEGG 130
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 53.6 bits (128), Expect = 1e-09
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 222 IRVYIVRAYGLHP---KDKDGKCDPYIVLKTGSVEIND-RENYVTNQINPYFGRHFEIQG 277
V ++RA + D DPY+ L + + R + N INP + FE
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 278 SFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
+ L + + D + V D+ +G + S
Sbjct: 65 DPNQENVLEITLMDANYV-MDETLGTATFTVSS 96
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 47.5 bits (112), Expect = 2e-07
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK---TGSVEINDRENYVTN 263
G + S+ + V I+R L D +G DP++ L + +
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 264 QINPYFGRHFEIQGSFPTDAKLTVEIK--DHDSVSKDDYIGMTEMDLES 310
+NP F F AK +++I D+D +DYIG ++ + +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 46.8 bits (110), Expect = 3e-07
Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 16/123 (13%)
Query: 221 TIRVYIVRAYGLHPKD-----------KDGKCDPYIVLKTGSVEINDRENYVTNQINPYF 269
+++ I A L P + DPYI L + +P +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR-IGQTATKQKTNSPAW 65
Query: 270 GRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV 329
F +L V + DD++ + E W DLE
Sbjct: 66 HDEFVTDVCNGRKIELAV--FHDAPIGYDDFVANCTIQFEE-LLQNGSRHFEDWI-DLEP 121
Query: 330 SGS 332
G
Sbjct: 122 EGK 124
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 43.2 bits (101), Expect = 5e-06
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 10/132 (7%)
Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDA 283
V + +A ++K + Y+ LK +V+ P + + F + +
Sbjct: 6 VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI---AVRGSQPSWEQDFMFEINRLDL- 58
Query: 284 KLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343
LTVE+ + + D +G + L + S G W + + + E+
Sbjct: 59 GLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGP-GEWLTLDSQAIMADSEICGTKDP 116
Query: 344 QSGEINSDPVRY 355
I D +
Sbjct: 117 TFHRILLD-AHF 127
>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 102
Score = 29.4 bits (66), Expect = 0.21
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 147 PEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSN 206
++ F + + F Y + + ++ + + + VT KP S
Sbjct: 32 EHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTL-KLNEIDFYEAFM-EEPVTIPDKPNSE 89
Query: 207 GALQESI 213
+ +
Sbjct: 90 EEIVNFV 96
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia
coli [TaxId: 562]}
Length = 394
Score = 29.9 bits (66), Expect = 0.53
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 226 IVRAYGLHPKDKDGKCDPYIVLKTGSVEIN------DRENYVTNQINPYFGRHFE-IQGS 278
+ G + ++ Y+ G ++ D E+Y+T Q+ P I+ +
Sbjct: 323 ENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDN 382
Query: 279 FPT 281
F T
Sbjct: 383 FAT 385
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
[TaxId: 1404]}
Length = 371
Score = 29.4 bits (66), Expect = 0.62
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 115 IQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTL 174
++ RE +E+ + + + +L + + QT+ G L K L
Sbjct: 260 LKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRRL 319
Query: 175 AEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNG---ALQESIDNEKVN 219
+ N+M P + D + ++ G AL +D E
Sbjct: 320 IHEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNAALHHEVDQENFG 367
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622
{Shewanella amazonensis [TaxId: 60478]}
Length = 144
Score = 27.5 bits (61), Expect = 1.6
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 61 RARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQR 120
R ++ S V + + DTDE +S Y V + + E ++++++
Sbjct: 69 RCVFHGFYLANAWIQLSIVARDISELQ-DTDEAIAEQEYSGLYVRVAEAALKESVKKLKK 127
Query: 121 ENEER 125
+R
Sbjct: 128 ARTDR 132
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor
{Streptococcus pyogenes [TaxId: 1314]}
Length = 48
Score = 25.4 bits (55), Expect = 1.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 55 NRTVKIRARYYKLIELEEKPSGSNVYDTFTI 85
++TV++RA + +I++E +G NV +
Sbjct: 4 DKTVRVRADLHHIIKIETAKNGGNVKEVMDQ 34
>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 113
Score = 25.2 bits (55), Expect = 6.1
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 73 KPSGSNVYDTFTIPEVDTDEEEKP-DWWSLYYSSVYSSGV 111
+ ++ +T E + ++ EKP W+LY++ SS +
Sbjct: 74 ERVVQKLFTPYTEIEAENEQVEKPRLLWALYFNMRDSSDI 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,846
Number of extensions: 69437
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 23
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)