BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4895
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4U|A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
pdb|2P4U|B Chain B, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
pdb|2P4U|C Chain C, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
pdb|2P4U|D Chain D, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus
Musculus
Length = 168
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 96/179 (53%), Gaps = 26/179 (14%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
G K+VLFVCLGNICRSP+A VF+ L+ D V +D W +D
Sbjct: 7 GSKSVLFVCLGNICRSPIAEAVFRKLVT----------------DEKV-----SDNWAID 45
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
S+ DW+VG P D RA L H + H+ARQ+ +EDF FDY+ MDESN ++
Sbjct: 46 SSAVSDWNVGRPPDPRAVSCLRNHGISTAHKARQITKEDFATFDYILCMDESNLRDL--- 102
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
R Q AKI LG YDP+ I+EDPYY D F++ Y+ C R C+ FL K
Sbjct: 103 -NRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FEVVYQQCLRCCKAFLEKT 159
>pdb|5PNT|A Chain A, Crystal Structure Of A Human Low Molecular Weight
Phosphotyrosyl Phosphatase. Implications For Substrate
Specificity
pdb|3N8I|A Chain A, Crystal Structure Of The A Isoform Of Human Cytoplasmic
Protein Tyrosine Phosphatase (Hcptp-A) In Complex With
1-Naphtylacetic Acid
Length = 157
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 26/177 (14%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K+VLFVCLGNICRSP+A VF+ L+ +N ++ W VDSA
Sbjct: 6 KSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSA--------------------- 44
Query: 309 GTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEK 368
T + +G+P D R + + +H +P H ARQ+ +EDF FDY+ MDESN ++
Sbjct: 45 ATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDL----N 100
Query: 369 RAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
R Q AKI LG YDP+ I+EDPYY D F+ Y+ C R C FL K
Sbjct: 101 RKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FETVYQQCVRCCRAFLEKA 156
>pdb|1DG9|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Hepes
pdb|1Z12|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Vanadate
pdb|1Z13|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase
Complexed With Molybdate
pdb|1PHR|A Chain A, The Crystal Structure Of A Low Molecular Phosphotyrosine
Protein Phosphatase
pdb|1PNT|A Chain A, Crystal Structure Of Bovine Heart Phosphotyrosyl
Phosphatase At 2.2 Angstroms Resolution
pdb|1BVH|A Chain A, Solution Structure Of A Low Molecular Weight Protein
Tyrosine Phosphatase
Length = 157
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K+VLFVCLGNICRSP+A VF+ L+ +N +D W +DS
Sbjct: 6 KSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGA-------------------- 45
Query: 309 GTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEK 368
DW+VG D RA L H + H+ARQV +EDF FDY+ MDESN ++
Sbjct: 46 -VSDWNVGRSPDPRAVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDL----N 100
Query: 369 RAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVE 426
R Q AKI LG YDP+ I+EDPYY D F+ Y+ C R C FL KV
Sbjct: 101 RKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDAD-FETVYQQCVRCCRAFLEKVR 157
>pdb|1C0E|A Chain A, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl
Phosphatase
pdb|1C0E|B Chain B, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl
Phosphatase
Length = 157
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K+VLFVCLGNICR+P+A VF+ L+ +N +D W +DS
Sbjct: 6 KSVLFVCLGNICRAPIAEAVFRKLVTDQNISDNWVIDSGA-------------------- 45
Query: 309 GTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEK 368
DW+VG D RA L H + H+ARQV +EDF FDY+ MDESN ++
Sbjct: 46 -VSDWNVGRSPDPRAVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDL----N 100
Query: 369 RAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVE 426
R Q AKI LG YDP+ I+EDPYY D F+ Y+ C R C FL KV
Sbjct: 101 RKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDAD-FETVYQQCVRCCRAFLEKVR 157
>pdb|1XWW|A Chain A, Crystal Structure Of Human B-Form Low Molecular Weight
Phosphotyrosyl Phosphatase At 1.6 Angstrom Resolution
Length = 157
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 91/179 (50%), Gaps = 26/179 (14%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
K+VLFVCLGNICRSP+A VF+ L+ +N ++ W +DS
Sbjct: 4 ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVS---------------- 47
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
DW+VG D RA L H + H+ARQ+ +EDF FDY+ MDESN ++
Sbjct: 48 -----DWNVGRSPDPRAVSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDL--- 99
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
R Q AKI LG YDP+ I+EDPYY D F+ Y+ C R C FL K
Sbjct: 100 -NRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FETVYQQCVRCCRAFLEKA 156
>pdb|2CWD|A Chain A, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
pdb|2CWD|B Chain B, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
pdb|2CWD|C Chain C, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
pdb|2CWD|D Chain D, Crystal Structure Of Tt1001 Protein From Thermus
Thermophilus Hb8
Length = 161
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 84/174 (48%), Gaps = 31/174 (17%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
VLFVCLGNICRSPMA +F+ L+ R DR+ VDSAG T
Sbjct: 7 VLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAG---------------------T 45
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRA 370
G WHVG P D RAR VL + H AR++ ED +D++ VMD N V
Sbjct: 46 GAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEV------- 98
Query: 371 VKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
+++ + K+ + + G V+DPYY +D F Y + + FL++
Sbjct: 99 LRRFPEARGKVRLV--LEELGGGEVQDPYYGDLED-FREVYWTLEAALQAFLDR 149
>pdb|1D1P|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
pdb|1D1P|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
Length = 160
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 30/180 (16%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K +V F+CLGN CRSPMA +FK+ + N +R+ +DS
Sbjct: 6 KISVAFICLGNFCRSPMAEAIFKHEVEKANLENRFN--------------------KIDS 45
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
GT ++HVG D R + +H V H+ +Q+ + F ++DY+ MDESN N+K +
Sbjct: 46 FGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQ 105
Query: 368 KRAVKQGIKPNAKILYLGDY---DPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
K AK+ GD+ D I+EDP+Y +D F+ ++ +QFL K
Sbjct: 106 PEGSK------AKVCLFGDWNTNDGTVQTIIEDPWYGDIQD-FEYNFKQITYFSKQFLKK 158
>pdb|1D1Q|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
pdb|1D1Q|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
Length = 161
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K +V F+ LGN CRSPMA +FK+ + N +R+ +DS
Sbjct: 7 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFN--------------------KIDS 46
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
GT ++HVG D R + +H V H+ +Q+ + F ++DY+ MDESN N+K +
Sbjct: 47 FGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQ 106
Query: 368 KRAVKQGIKPNAKILYLGDY---DPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
K AK+ GD+ D I+EDP+Y +D F+ ++ +QFL K
Sbjct: 107 PEGSK------AKVCLFGDWNTNDGTVQTIIEDPWYGDIQD-FEYNFKQITYFSKQFLKK 159
>pdb|1D2A|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
pdb|1D2A|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
Length = 160
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K +V F+ LGN CRSPMA +FK+ + N +R+ +DS
Sbjct: 6 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFN--------------------KIDS 45
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
GT ++HVG D R + +H V H+ +Q+ + F ++DY+ MDESN N+K +
Sbjct: 46 FGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQ 105
Query: 368 KRAVKQGIKPNAKILYLGDY---DPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
K AK+ GD+ D I+EDP+Y +D F+ ++ +QFL K
Sbjct: 106 PEGSK------AKVCLFGDWNTNDGTVQTIIEDPWYGDIQD-FEYNFKQITYFSKQFLKK 158
>pdb|4ETM|A Chain A, Crystal Structure Of Yfkj From Bacillus Subtilis
pdb|4ETM|B Chain B, Crystal Structure Of Yfkj From Bacillus Subtilis
Length = 173
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 35/199 (17%)
Query: 233 SSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDW 292
S + Q + R + +VLFVCLGNICRSPMA +F+ L + + DSA
Sbjct: 6 SMTGGQQMGRGSMI---SVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSA----- 57
Query: 293 HVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQ-ARQVIEEDFGKFDY 351
G G WH+G+P +++L + + ARQV E+D FDY
Sbjct: 58 ----------------GIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDY 101
Query: 352 LFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDY-DPKGVKIVEDPYYSRAKDAFDIC 410
+ MD N ++++ G K + I L DY + + V DPYY+ F+
Sbjct: 102 IIAMDAENIGSLRSM------AGFKNTSHIKRLLDYVEDSDLADVPDPYYT---GNFEEV 152
Query: 411 YEHCYRSCEQFLNKVEKNE 429
+ CEQ L ++K +
Sbjct: 153 CQLIKTGCEQLLASIQKEK 171
>pdb|3ROF|A Chain A, Crystal Structure Of The S. Aureus Protein Tyrosine
Phosphatase Ptpa
Length = 158
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 37/184 (20%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
G V FVCLGNICRSPMA + + + RN D V
Sbjct: 5 GMVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD----------------------IKVH 42
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
S GTG W++G P + +L KHN+P ++ E FDY+ MD+SN N+K+
Sbjct: 43 SRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEAT-DDFDYIVAMDQSNVDNIKS- 100
Query: 367 EKRAVKQGIKPNAK--ILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
I PN K + L ++ V DPYY+ + F+ Y+ SC+ ++
Sbjct: 101 --------INPNLKGQLFKLLEFSNMEESDVPDPYYT---NNFEGVYDMVLSSCDNLIDY 149
Query: 425 VEKN 428
+ K+
Sbjct: 150 IVKD 153
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Tritrichomonas Foetus
Length = 146
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTV 305
A KKAVLFVCLGNICRSP + + ++ D+ +
Sbjct: 2 AEKKAVLFVCLGNICRSPACEGICRDMV--------------------------GDKLII 35
Query: 306 DSAGTGDWHVGHPADSRARDVLAKHNVPCQHQ-ARQVIEEDFGKFDYLFVMDESNFANVK 364
DSA T +HVG D+R++ V + V Q ARQ+ + DF KFD + +D+S +++
Sbjct: 36 DSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQITKADFSKFDVIAALDQSILSDIN 95
Query: 365 AFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
+ + + AK++ P G V+DPYYS D F + + + FL +
Sbjct: 96 SMKPSNCR------AKVVLFN--PPNG---VDDPYYS--SDGFPTMFASISKEMKPFLTE 142
>pdb|3IDO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3IDO|B Chain B, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With A Phosphotyrosine Crude Mimic
Hepes Molecule In The Active Site
pdb|3ILY|A Chain A, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3ILY|B Chain B, Apo Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica Featuring A Disordered Active Site
pdb|3JS5|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From
Entamoeba Histolytica With Hepes In The Active Site.
High Resolution, Alternative Crystal Form With 1
Molecule In Asymmetric Unit
Length = 178
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
G +LFVCLGNICRSP A V K +I Q+ + +++ D
Sbjct: 20 GSMKLLFVCLGNICRSPAAEAVMKKVI---------------------QNHHLTEKYICD 58
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
SAGT +H G ADSR R V +R V+ DF FDY+F MD N+ +
Sbjct: 59 SAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDR 118
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVE--DPYYSRAKDAFDICYEHCYRSCEQFLNK 424
KQ KI + D+ +K E DPYY K F + +CE + K
Sbjct: 119 CPEQYKQ------KIFKMVDF-CTTIKTTEVPDPYYGGEK-GFHRVIDILEDACENLIIK 170
Query: 425 VEKNEV 430
+E+ ++
Sbjct: 171 LEEGKL 176
>pdb|3JVI|A Chain A, Product State Mimic Crystal Structure Of Protein Tyrosine
Phosphatase From Entamoeba Histolytica
Length = 161
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
G +LFVCLGNICRSP A V K +I Q+ + +++ D
Sbjct: 3 GSMKLLFVCLGNICRSPAAEAVMKKVI---------------------QNHHLTEKYICD 41
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
SAGT +H G ADSR R V +R V+ DF FDY+F MD N+ +
Sbjct: 42 SAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDR 101
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVE--DPYYSRAKDAFDICYEHCYRSCEQFLNK 424
KQ KI + D+ +K E DPYY K F + +CE + K
Sbjct: 102 CPEQYKQ------KIFKMVDF-CTTIKTTEVPDPYYGGEK-GFHRVIDILEDACENLIIK 153
Query: 425 VEKNEV 430
+E+ ++
Sbjct: 154 LEEGKL 159
>pdb|1U2P|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Low
Molecular Protein Tyrosine Phosphatase (Mptpa) At 1.9a
Resolution
pdb|1U2Q|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Low
Molecular Weight Protein Tyrosine Phosphatase (Mptpa) At
2.5a Resolution With Glycerol In The Active Site
Length = 163
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
V FVC GNICRSPMA +F + R D V SAGT
Sbjct: 7 VTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGT--------------------- 45
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRA 370
G+WHVG AD RA VL H P H+A QV E D L +D ++ R
Sbjct: 46 GNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAA-DLLVALDRNH--------ARL 96
Query: 371 VKQGIKPNAKILYLGDYDPKG---VKIVEDPYYSRAKD 405
++Q A++ L +DP+ VEDPYY D
Sbjct: 97 LRQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSD 134
>pdb|2LUO|A Chain A, Nmr Solution Structure Of Apo-Mptpa
Length = 164
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
V FVC GNICRSPMA +F + R D V SAGT
Sbjct: 8 VTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGT--------------------- 46
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRA 370
G+WHVG AD RA VL H P H+A QV E D L +D ++ R
Sbjct: 47 GNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAA-DLLVALDRNH--------ARL 97
Query: 371 VKQGIKPNAKILYLGDYDPKG---VKIVEDPYYSRAKD 405
++Q A++ L +DP+ VEDPYY D
Sbjct: 98 LRQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSD 135
>pdb|2GI4|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Campylobacter Jejuni
Length = 156
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 33/176 (18%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K +LF+CLGNICRSPMA + K L+ N + ++SAGT H D
Sbjct: 2 KKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSGEH------------DGE 49
Query: 309 GTGDWHVGHPADSRARDVLAKHNVPCQH-QARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
G H G ++ LA+ N+ ++ ++++ ++ + D+L MD SNF NV
Sbjct: 50 G---MHYG------TKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNV---- 96
Query: 368 KRAVKQGIKPNAKILYLGDYDPK-GVKIVEDPYYSRAKDAFDICYEHCYRSCEQFL 422
+K K+L + D+ P V DP+YS FD Y+ +C+ L
Sbjct: 97 ---LKNFTNTQNKVLKITDFSPSLNYDEVPDPWYS---GNFDETYKILSLACKNLL 146
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|B Chain B, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|C Chain C, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|D Chain D, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 113 IAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDG-PLYYPTISTISC 171
++ LP+ +++LE+ + G + KP+ + IN+Y GQGI H D + I ++S
Sbjct: 172 LSGGLPDICESFLEKWLRKGYIKH-KPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSL 230
Query: 172 GSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSS 226
GS +++F PD + + + RSLL++ + + HGI+ + DT+ +
Sbjct: 231 GSEIVMDFKHPDGIA-----VPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQA 280
>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 113 IAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDG-PLYYPTISTISC 171
++ LP+ +++LE+ + G + KP+ IN+Y GQGI H D + I ++S
Sbjct: 172 LSGGLPDICESFLEKWLRKGYIKH-KPDQXTINQYEPGQGIPAHIDTHSAFEDEIVSLSL 230
Query: 172 GSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSS 226
GS + +F PD + + + RSLL+ + + HGI+ + DT+ +
Sbjct: 231 GSEIVXDFKHPDGIA-----VPVXLPRRSLLVXTGESRYLWTHGITCRKFDTVQA 280
>pdb|4EGS|A Chain A, Crystal Structure Analysis Of Low Molecular Weight Protein
Tyrosine Phosphatase From T. Tengcongensis
pdb|4EGS|B Chain B, Crystal Structure Analysis Of Low Molecular Weight Protein
Tyrosine Phosphatase From T. Tengcongensis
Length = 180
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 230 NCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGT 289
+ S + Q + R G VLFVC GN CRSPMA +F NA+++A
Sbjct: 20 HMASMTGGQQMGR----GSMRVLFVCTGNTCRSPMAEGIF----NAKSKA---------- 61
Query: 290 GDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAK-HNVPCQ-HQARQVIEEDFG 347
W SAG G PA S A +VL K + + H+A+ + EED
Sbjct: 62 ---------LGKDWEAKSAGVFAPE-GFPASSEAVEVLKKEYGIDISDHRAKSLREEDLK 111
Query: 348 KFDYLFVM 355
D + M
Sbjct: 112 GADLVLAM 119
>pdb|2FEK|A Chain A, Structure Of A Protein Tyrosine Phosphatase
Length = 167
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 39/181 (21%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
+L VC+GNICRSP A + + +H + V+SAG
Sbjct: 25 ILVVCVGNICRSPTAERLLQ--------------------RYHPE-------LKVESAGL 57
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKR 369
G VG AD A V A+H + + H ARQ+ +D + M++ + +R
Sbjct: 58 GAL-VGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHI-------ER 109
Query: 370 AVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKNE 429
+ + K++ G +D + + DP Y ++++ F Y RS Q+ + +
Sbjct: 110 LCEMAPEMRGKVMLFGHWDNECE--IPDP-YRKSRETFAAVYTLLERSARQWAQALNAEQ 166
Query: 430 V 430
V
Sbjct: 167 V 167
>pdb|4ETI|A Chain A, Crystal Structure Of Ywle From Bacillus Subtilis
Length = 184
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 230 NCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGT 289
+ S + Q + R G ++FVC GN CRSPMA +FK + A + V SAG
Sbjct: 20 HMASMTGGQQMGR----GSMDIIFVCTGNTCRSPMAEALFKSI--AEREGLNVNVRSAGV 73
Query: 290 GDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHN--VPCQHQARQVIEEDFG 347
+A V++ + H + +++ + + HQ +Q+I FG
Sbjct: 74 ---FASPNGKATPHAVEALFEKHIALNHVSSPLTEELMESADLVLAMTHQHKQIIASQFG 130
Query: 348 KF-DYLFVMDE 357
++ D +F + E
Sbjct: 131 RYRDKVFTLKE 141
>pdb|1ZGG|A Chain A, Solution Structure Of A Low Molecular Weight Protein
Tyrosine Phosphatase From Bacillus Subtilis
Length = 150
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
++FVC GN CRSPMA +FK + A + V SAG +A V++
Sbjct: 3 IIFVCTGNTCRSPMAEALFKSI--AEREGLNVNVRSAGV---FASPNGKATPHAVEALFE 57
Query: 311 GDWHVGHPADSRARDVLAKHN--VPCQHQARQVIEEDFGKF-DYLFVMDE 357
+ H + +++ + + HQ +Q+I FG++ D +F + E
Sbjct: 58 KHIALNHVSSPLTEELMESADLVLAMTHQHKQIIASQFGRYRDKVFTLKE 107
>pdb|2WJA|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate.
pdb|2WJA|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate
Length = 168
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 250 AVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAG 309
++L +C GNICRSP+ + + L+ ++ ++SAG G
Sbjct: 28 SILVICTGNICRSPIGERLLRRLLPSKK------INSAGVGAL----------------- 64
Query: 310 TGDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEK 368
V H AD A V K+ + + H+ + ++D L VM+ S+ +
Sbjct: 65 -----VDHAADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQISRIAP 119
Query: 369 RAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
A K + G + K + DP Y + +AFD Y+ ++ +++ K+
Sbjct: 120 EA-------RGKTMLFGHWLDS--KEIPDP-YRMSDEAFDSVYQLLEQASKRWAEKL 166
>pdb|4ETN|A Chain A, Crystal Structure Of Ywle Mutant From Bacillus Subtilis
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 230 NCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGT 289
+ S + Q + R G ++FVC GN RSPMA +FK + A + V SAG
Sbjct: 20 HMASMTGGQQMGR----GSMDIIFVCTGNTSRSPMAEALFKSI--AEREGLNVNVRSAGV 73
Query: 290 GDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHN--VPCQHQARQVIEEDFG 347
+A V++ + H + +++ + + HQ +Q+I FG
Sbjct: 74 ---FASPNGKATPHAVEALFEKHIALNHVSSPLTEELMESADLVLAMTHQHKQIIASQFG 130
Query: 348 KF-DYLFVMDE 357
++ D +F + E
Sbjct: 131 RYRDKVFTLKE 141
>pdb|2WMY|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|C Chain C, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|D Chain D, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|E Chain E, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|F Chain F, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|G Chain G, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|H Chain H, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate
Length = 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 250 AVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAG 309
++L +C GNICRSP+ + + L+ ++ ++SAG G
Sbjct: 10 SILVICTGNICRSPIGERLLRRLLPSKK------INSAGVGAL----------------- 46
Query: 310 TGDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEK 368
V H AD A V K+ + + H+ + ++D L VM+ S+ +
Sbjct: 47 -----VDHTADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQISRIAP 101
Query: 369 RAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
A K + G + K + DP Y + +AFD Y+ ++ +++ K+
Sbjct: 102 EA-------RGKTMLFGHWLDS--KEIPDP-YRMSDEAFDSVYQLLEQASKRWAEKL 148
>pdb|2CD7|A Chain A, Staphylococcus Aureus Pi258 Arsenate Reductase (Arsc) H62q
Mutant
Length = 131
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 41/165 (24%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
KK + F+C GN CRS M A+ W + G G W V S
Sbjct: 3 KKTIYFICTGNSCRSQM--------------AEGWGKEILGEG------------WNVYS 36
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
AG H + +A + + + ++ +Q +I+ D K L V S+ N
Sbjct: 37 AGIE----THGVNPKAIEAMKEVDIDISNQTSDLIDNDILKQSDLVVTLCSDADNNCPI- 91
Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYE 412
+ PN K + G DP G + E + R +D + E
Sbjct: 92 -------LPPNVKKEHWGFDDPAGKEWSE---FQRVRDEIKLAIE 126
>pdb|1Y1L|A Chain A, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
pdb|1Y1L|B Chain B, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
pdb|1Y1L|C Chain C, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
pdb|1Y1L|D Chain D, Crystal Stracture Of Arsenate Reductase From Archaeoglobus
Fulgidus Dsm 4304, Structural Genomics
Length = 124
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 30/109 (27%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
VLFVC+ N RS MA +F + A W +SAG V +A+R
Sbjct: 2 VLFVCIHNTARSVMAEALFNAM------AKSWKAESAG--------VEKAER-------- 39
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESN 359
D + +LA+ + + + R V E + FD + + E +
Sbjct: 40 --------VDETVKRLLAERGLKAKEKPRTVDEVNLDDFDLIVTVCEES 80
>pdb|1LK0|A Chain A, Disulfide Intermediate Of C89l Arsenate Reductase From
Pi258
pdb|1LK0|B Chain B, Disulfide Intermediate Of C89l Arsenate Reductase From
Pi258
Length = 131
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 41/165 (24%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
KK + F+C GN CRS M A+ W + G G W V S
Sbjct: 3 KKTIYFICTGNSCRSQM--------------AEGWGKEILGEG------------WNVYS 36
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
AG H + +A + + + ++ + +I+ D K L V S+ N
Sbjct: 37 AGIE----THGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNLPI- 91
Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYE 412
+ PN K + G DP G + E + R +D + E
Sbjct: 92 -------LPPNVKKEHWGFDDPAGKEWSE---FQRVRDEIKLAIE 126
>pdb|1LJL|A Chain A, Wild Type Pi258 S. Aureus Arsenate Reductase
Length = 131
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAG 288
KK + F+C GN CRS MA K ++ + W V SAG
Sbjct: 3 KKTIYFICTGNSCRSQMAEGWGKEIL-----GEGWNVYSAG 38
>pdb|1JL3|A Chain A, Crystal Structure Of B. Subtilis Arsc
pdb|1JL3|B Chain B, Crystal Structure Of B. Subtilis Arsc
pdb|1JL3|C Chain C, Crystal Structure Of B. Subtilis Arsc
pdb|1JL3|D Chain D, Crystal Structure Of B. Subtilis Arsc
pdb|1Z2D|A Chain A, Solution Structure Of Bacillus Subtilis Arsc In Reduced
State
pdb|1Z2E|A Chain A, Solution Structure Of Bacillus Subtilis Arsc In Oxidized
State
Length = 139
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAG 288
K + F+C GN CRS MA K + D W V SAG
Sbjct: 4 KIIYFLCTGNSCRSQMAEGWAKQYL-----GDEWKVYSAG 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,837,610
Number of Sequences: 62578
Number of extensions: 616631
Number of successful extensions: 1623
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 37
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)