Query psy4895
Match_columns 430
No_of_seqs 341 out of 2702
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:30:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3200|consensus 100.0 1.1E-40 2.3E-45 289.9 11.7 201 6-253 1-214 (224)
2 KOG3217|consensus 100.0 3.5E-38 7.6E-43 266.9 14.9 153 248-425 6-158 (159)
3 PRK11391 etp phosphotyrosine-p 100.0 1.8E-35 4E-40 260.8 13.5 141 248-426 2-143 (144)
4 PRK10126 tyrosine phosphatase; 100.0 2E-35 4.4E-40 261.6 13.8 143 249-429 3-146 (147)
5 COG0394 Wzb Protein-tyrosine-p 100.0 5.3E-35 1.2E-39 255.4 13.5 137 248-426 2-139 (139)
6 smart00226 LMWPc Low molecular 100.0 4.5E-34 9.6E-39 251.0 12.6 139 251-423 1-139 (140)
7 PF01451 LMWPc: Low molecular 100.0 2.7E-33 5.8E-38 245.4 13.5 137 251-422 1-138 (138)
8 cd00115 LMWPc Substituted upda 100.0 7.5E-33 1.6E-37 243.6 13.9 140 249-423 1-141 (141)
9 PRK13530 arsenate reductase; P 100.0 5.9E-31 1.3E-35 229.0 12.7 128 247-424 2-131 (133)
10 TIGR02689 ars_reduc_gluta arse 100.0 1E-30 2.2E-35 225.7 10.6 125 249-422 1-126 (126)
11 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.8E-30 3.9E-35 240.0 10.6 170 64-251 1-194 (194)
12 PRK15401 alpha-ketoglutarate-d 100.0 2.5E-28 5.3E-33 226.1 18.0 175 59-252 14-212 (213)
13 TIGR02691 arsC_pI258_fam arsen 100.0 2.6E-29 5.7E-34 217.5 9.2 122 251-421 1-129 (129)
14 TIGR00568 alkb DNA alkylation 99.9 3.3E-25 7.1E-30 199.6 15.4 144 69-216 2-169 (169)
15 COG3145 AlkB Alkylated DNA rep 99.9 6.4E-22 1.4E-26 179.9 13.9 157 59-222 11-187 (194)
16 KOG4176|consensus 99.9 2.5E-21 5.5E-26 189.1 12.9 218 17-254 70-305 (323)
17 KOG3959|consensus 99.8 1.5E-20 3.2E-25 171.4 2.2 154 63-219 72-263 (306)
18 COG4551 Predicted protein tyro 99.0 4.3E-10 9.2E-15 88.7 5.0 106 248-422 1-106 (109)
19 KOG2731|consensus 98.3 7.8E-07 1.7E-11 87.1 5.1 118 97-218 164-293 (378)
20 PRK05467 Fe(II)-dependent oxyg 97.6 0.00081 1.8E-08 63.6 12.0 139 65-219 2-164 (226)
21 smart00702 P4Hc Prolyl 4-hydro 97.5 0.0042 9.1E-08 56.4 14.5 149 63-219 1-165 (178)
22 PF03171 2OG-FeII_Oxy: 2OG-Fe( 96.8 0.00075 1.6E-08 55.0 2.7 84 139-252 1-96 (98)
23 COG3128 PiuC Uncharacterized i 95.4 0.079 1.7E-06 48.0 8.1 146 64-219 3-167 (229)
24 PLN00052 prolyl 4-hydroxylase; 95.0 0.18 3.9E-06 50.1 10.1 105 53-159 42-151 (310)
25 PF12933 FTO_NTD: FTO catalyti 93.5 0.088 1.9E-06 49.7 4.1 81 136-219 135-239 (253)
26 PF13640 2OG-FeII_Oxy_3: 2OG-F 93.3 0.075 1.6E-06 43.1 3.0 73 142-219 1-86 (100)
27 KOG3200|consensus 91.8 0.4 8.8E-06 43.1 5.7 34 53-87 3-36 (224)
28 KOG2424|consensus 91.5 0.86 1.9E-05 41.2 7.5 109 245-364 2-120 (195)
29 KOG1591|consensus 89.8 1.8 3.9E-05 42.6 8.8 138 54-204 86-250 (289)
30 PF04722 Ssu72: Ssu72-like pro 89.5 0.18 3.9E-06 46.2 1.5 99 249-364 2-118 (195)
31 PF13532 2OG-FeII_Oxy_2: 2OG-F 87.2 0.49 1.1E-05 43.2 2.9 23 19-41 1-23 (194)
32 PF09859 Oxygenase-NA: Oxygena 81.3 7.5 0.00016 34.9 7.5 96 116-218 42-157 (173)
33 cd05569 PTS_IIB_fructose PTS_I 78.6 5.1 0.00011 32.6 5.3 65 251-362 3-67 (96)
34 TIGR00829 FRU PTS system, fruc 68.4 11 0.00023 30.0 4.7 64 252-362 3-66 (85)
35 TIGR01762 chlorin-enz chlorina 68.2 55 0.0012 32.1 10.7 24 63-86 14-37 (288)
36 COG3414 SgaB Phosphotransferas 68.2 9.9 0.00021 30.9 4.5 26 249-274 2-27 (93)
37 COG2850 Uncharacterized conser 61.8 20 0.00044 36.2 6.2 89 122-218 101-202 (383)
38 COG1445 FrwB Phosphotransferas 57.6 17 0.00036 31.0 4.1 64 252-362 7-70 (122)
39 PF08007 Cupin_4: Cupin superf 55.9 18 0.0004 36.0 4.9 62 140-205 112-189 (319)
40 PRK10427 putative PTS system f 54.6 27 0.00059 29.4 5.0 62 251-359 7-68 (114)
41 cd05563 PTS_IIB_ascorbate PTS_ 54.5 16 0.00035 28.5 3.4 28 250-277 1-28 (86)
42 PF09652 Cas_VVA1548: Putative 52.9 16 0.00034 29.6 3.1 42 320-361 6-47 (93)
43 COG5211 SSU72 RNA polymerase I 50.3 98 0.0021 27.7 7.8 39 245-291 3-41 (197)
44 PF12851 Tet_JBP: Oxygenase do 49.7 1.1E+02 0.0023 27.7 8.4 76 136-220 73-153 (171)
45 KOG2731|consensus 48.3 10 0.00022 38.1 1.6 47 137-184 312-364 (378)
46 PRK09590 celB cellobiose phosp 45.9 16 0.00034 30.3 2.2 29 249-278 2-30 (104)
47 PF12441 DUF3680: Protein of u 44.2 28 0.00061 23.9 2.8 16 23-38 5-20 (42)
48 COG5092 NMT1 N-myristoyl trans 44.0 16 0.00035 36.1 2.2 59 241-301 158-218 (451)
49 PF02302 PTS_IIB: PTS system, 43.1 22 0.00047 27.9 2.5 29 250-278 1-29 (90)
50 cd02980 TRX_Fd_family Thioredo 39.8 38 0.00081 25.6 3.4 25 251-275 2-26 (77)
51 KOG3959|consensus 39.2 19 0.00042 34.1 1.9 29 15-43 68-97 (306)
52 TIGR02620 cas_VVA1548 putative 36.2 41 0.0009 27.2 3.1 41 320-360 6-46 (93)
53 PRK10474 putative PTS system f 35.7 83 0.0018 25.0 4.8 23 338-360 28-50 (88)
54 PLN02904 oxidoreductase 35.1 97 0.0021 31.4 6.4 71 141-221 209-285 (357)
55 PLN02683 pyruvate dehydrogenas 34.3 1.3E+02 0.0027 30.6 7.1 55 301-360 229-291 (356)
56 cd05567 PTS_IIB_mannitol PTS_I 33.5 53 0.0011 25.8 3.4 29 250-278 2-30 (87)
57 PRK10310 PTS system galactitol 32.2 41 0.00088 27.1 2.5 30 249-278 3-32 (94)
58 PRK10222 PTS system L-ascorbat 32.1 39 0.00085 26.7 2.4 36 322-357 6-43 (85)
59 PRK11404 putative PTS system 30.4 63 0.0014 34.3 4.3 59 252-357 9-67 (482)
60 TIGR00639 PurN phosphoribosylg 30.4 1.1E+02 0.0024 28.0 5.5 23 249-274 1-23 (190)
61 TIGR01244 conserved hypothetic 30.3 69 0.0015 27.5 3.8 21 249-270 87-107 (135)
62 PRK09548 PTS system ascorbate- 29.2 93 0.002 33.9 5.3 33 246-278 504-536 (602)
63 PRK00994 F420-dependent methyl 28.2 1.4E+02 0.0029 28.7 5.5 105 249-361 3-122 (277)
64 COG2213 MtlA Phosphotransferas 28.1 67 0.0014 33.0 3.7 34 246-279 376-409 (472)
65 PRK00652 lpxK tetraacyldisacch 27.6 1.7E+02 0.0037 29.4 6.6 47 242-291 43-91 (325)
66 PLN02156 gibberellin 2-beta-di 27.6 1.9E+02 0.0042 29.0 7.0 73 140-221 178-258 (335)
67 PRK10712 PTS system fructose-s 27.6 82 0.0018 34.1 4.6 65 250-361 107-171 (563)
68 PF02817 E3_binding: e3 bindin 27.2 44 0.00096 22.4 1.6 29 318-346 4-37 (39)
69 TIGR00557 pdxA 4-hydroxythreon 27.0 54 0.0012 32.9 2.9 52 306-358 199-262 (320)
70 cd00133 PTS_IIB PTS_IIB: subun 26.8 53 0.0012 24.5 2.3 29 250-278 1-29 (84)
71 cd05564 PTS_IIB_chitobiose_lic 26.0 60 0.0013 26.2 2.5 28 250-278 1-28 (96)
72 PTZ00273 oxidase reductase; Pr 25.9 1.6E+02 0.0035 29.1 6.2 72 140-221 177-256 (320)
73 CHL00144 odpB pyruvate dehydro 25.8 2E+02 0.0043 28.8 6.8 55 301-360 202-264 (327)
74 PF01993 MTD: methylene-5,6,7, 25.8 27 0.00059 33.3 0.5 103 249-361 2-121 (276)
75 PF01233 NMT: Myristoyl-CoA:pr 25.7 69 0.0015 28.7 3.0 39 246-284 108-147 (162)
76 KOG0409|consensus 25.6 2.5E+02 0.0053 28.1 7.0 73 247-363 34-108 (327)
77 KOG2915|consensus 25.4 6.4E+02 0.014 24.9 9.6 174 152-423 44-225 (314)
78 TIGR02408 ectoine_ThpD ectoine 25.3 2.2E+02 0.0048 27.6 6.8 25 63-87 28-52 (277)
79 PRK09765 PTS system 2-O-a-mann 25.1 1.4E+02 0.0029 33.0 5.8 64 250-360 167-230 (631)
80 PRK09212 pyruvate dehydrogenas 25.1 2.2E+02 0.0047 28.5 6.8 53 302-359 203-263 (327)
81 PLN00052 prolyl 4-hydroxylase; 25.1 65 0.0014 32.1 3.1 35 7-41 41-77 (310)
82 PF10087 DUF2325: Uncharacteri 24.2 59 0.0013 26.1 2.2 42 318-359 10-59 (97)
83 cd03064 TRX_Fd_NuoE TRX-like [ 23.3 1.5E+02 0.0032 22.7 4.2 27 250-276 2-28 (80)
84 PLN02515 naringenin,2-oxogluta 23.2 2.4E+02 0.0051 28.7 6.8 73 140-220 195-273 (358)
85 COG4282 SMI1 Protein involved 23.2 3.1E+02 0.0067 24.8 6.5 95 29-130 79-177 (191)
86 cd05566 PTS_IIB_galactitol PTS 22.2 1E+02 0.0022 24.0 3.2 30 249-278 1-30 (89)
87 PLN02947 oxidoreductase 22.1 2.3E+02 0.005 28.9 6.5 72 140-221 225-302 (374)
88 PF02606 LpxK: Tetraacyldisacc 21.6 1.3E+02 0.0029 30.1 4.6 66 256-334 45-110 (326)
89 PLN02254 gibberellin 3-beta-di 21.6 2.2E+02 0.0047 28.9 6.1 70 141-220 211-287 (358)
90 cd05565 PTS_IIB_lactose PTS_II 21.5 1.2E+02 0.0026 24.8 3.4 28 250-278 2-29 (99)
91 PLN03001 oxidoreductase, 2OG-F 20.9 2.2E+02 0.0048 27.5 5.8 70 141-220 117-192 (262)
92 PF12426 DUF3674: RNA dependen 20.7 51 0.0011 22.4 0.9 20 10-29 17-36 (41)
93 KOG0143|consensus 20.2 2.4E+02 0.0053 28.1 6.1 68 141-218 177-252 (322)
No 1
>KOG3200|consensus
Probab=100.00 E-value=1.1e-40 Score=289.88 Aligned_cols=201 Identities=49% Similarity=0.876 Sum_probs=180.5
Q ss_pred cccccccccCCCCceeeccCCcChHHHHHHHHHHhhcccccCCCCccccccccccCCCceEEeCCCCCHHHHHHHHHHHh
Q psy4895 6 VNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIY 85 (430)
Q Consensus 6 ~~~~~~~~~~~p~~~~yip~fi~~~ee~~ll~~i~~~~~~~~~~~~~l~~~~~~~lp~Gl~~ipdfls~~ee~~Ll~~l~ 85 (430)
+++++|+|++.| +++|||||||+|||+.+|++|+++|. +
T Consensus 1 m~~~~F~V~~~p-t~~YIPnfIt~EEe~~~lshIe~ap~---p------------------------------------- 39 (224)
T KOG3200|consen 1 MNIKKFIVKSAP-TMIYIPNFITEEEENLYLSHIENAPQ---P------------------------------------- 39 (224)
T ss_pred CCcceeEecccc-eEEEcCCccChHHHHHHHHHHhcCCC---c-------------------------------------
Confidence 368899999999 89999999999999999999988877 2
Q ss_pred cCCCCcccccccceEEEecCcCCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCCCCCCCc
Q psy4895 86 SVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPT 165 (430)
Q Consensus 86 ~~~~~~w~~~~~rr~~~~G~~~~~~~~~~~~~P~~l~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~~~~~~~ 165 (430)
+|+.+.+||+|+||+..+.++++++.+|+||+.+.+++...++|++ ..|+++||+|.||+||+||.|.+.|-+.
T Consensus 40 -----kW~~L~NRRLqNyGGvvh~~glipeelP~wLq~~v~kinnlglF~s-~~NHVLVNeY~pgqGImPHtDGPaf~pi 113 (224)
T KOG3200|consen 40 -----KWRVLANRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNLGLFKS-PANHVLVNEYLPGQGIMPHTDGPAFHPI 113 (224)
T ss_pred -----hhHHHHhhhhhhcCCccccCCcCccccCHHHHHHHHHhhcccccCC-CcceeEeecccCCCCcCcCCCCCcccce
Confidence 5888889999999999999999999999999999999999999966 9999999999999999999999999999
Q ss_pred eEEEcCCCceEEEEecCCCCC----------CCCeeEEEEeCCCeEEEecchhhccccccccCCCCCCCccccccc--cC
Q psy4895 166 ISTISCGSHTILNFYEPDRTS----------EGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNC--CS 233 (430)
Q Consensus 166 Ia~lSLgs~~~m~f~~~~~~~----------~~~~~~~l~L~~gSlliMsG~aR~~w~H~I~~~~~d~~~~~~~~~--~~ 233 (430)
|++|||||+++|.|....+.. .....+.+.|+++|++|+.++++.+|.|||.....|.++..++|+ |.
T Consensus 114 VstiSlGsh~vldf~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~ 193 (224)
T KOG3200|consen 114 VSTISLGSHTVLDFYDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACS 193 (224)
T ss_pred EEEEecCCceEEecccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhcc
Confidence 999999999999998743211 246778999999999999999999999999999999988877775 43
Q ss_pred -CCCCcccccccccccceEEE
Q psy4895 234 -SSPNQMLNRSTRAGKKAVLF 253 (430)
Q Consensus 234 -~~~~~~l~r~~R~s~t~~lf 253 (430)
...|..+.|++|+|+|.+++
T Consensus 194 s~k~Gd~lvr~tRvSLTiR~V 214 (224)
T KOG3200|consen 194 SRKDGDKLVRQTRVSLTIRLV 214 (224)
T ss_pred ccCCcceeeecceeEEEEecc
Confidence 48888899999999987654
No 2
>KOG3217|consensus
Probab=100.00 E-value=3.5e-38 Score=266.87 Aligned_cols=153 Identities=44% Similarity=0.855 Sum_probs=136.1
Q ss_pred cceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHH
Q psy4895 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVL 327 (430)
Q Consensus 248 ~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L 327 (430)
..+|+|||.||+||||||||+|+.++.++|+.. +|.|+||||..||+|+.+||+++.+|
T Consensus 6 ~~svlFvclGNiCRSP~AEaVFr~~v~K~~l~~---------------------~~~iDSagt~~yh~G~~PD~R~~s~l 64 (159)
T KOG3217|consen 6 TKSVLFVCLGNICRSPIAEAVFRDLVKKRNLSE---------------------EWHIDSAGTSGYHTGRSPDPRTLSIL 64 (159)
T ss_pred ceEEEEEEecccccCHHHHHHHHHHHHHcCcce---------------------eeeeccccccccccCCCCChHHHHHH
Confidence 478999999999999999999999999998854 46778888899999999999999999
Q ss_pred HhCCCCCCCcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHH
Q psy4895 328 AKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAF 407 (430)
Q Consensus 328 ~e~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f 407 (430)
++|||.+.|.+|+++.+||..||||++||++|+++|.++.-- ++....+||.+++.|++.+...|+||||++ ...|
T Consensus 65 K~hGI~~~H~aRqit~~DF~~FDYI~~MDesN~~dL~~~a~~---~~~~~kakV~Llgsy~~~~~~~I~DPyYg~-~~~F 140 (159)
T KOG3217|consen 65 KKHGIKIDHLARQITTSDFREFDYILAMDESNLRDLLRKASN---QPKGSKAKVLLLGSYDKNGQKIIEDPYYGG-DSKF 140 (159)
T ss_pred HHcCCcchhhcccccHhHhhhcceeEEecHHHHHHHHHHhcc---CCCCcceEEEEeeccCCCCCeecCCCCCCc-cccH
Confidence 999999999999999999999999999999999999875311 122345899999999998778999999997 4569
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4895 408 DICYEHCYRSCEQFLNKV 425 (430)
Q Consensus 408 ~~~~~~I~~~i~~ll~~l 425 (430)
+.+|+||.+.|++|++..
T Consensus 141 e~vy~qi~~~c~~~l~s~ 158 (159)
T KOG3217|consen 141 ETVYQQIVDCCKAFLKSI 158 (159)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999864
No 3
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=100.00 E-value=1.8e-35 Score=260.77 Aligned_cols=141 Identities=31% Similarity=0.562 Sum_probs=124.8
Q ss_pred cceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHH
Q psy4895 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVL 327 (430)
Q Consensus 248 ~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L 327 (430)
+++|||||+||+|||||||++|+++.. ++.|+||||.++ .|.++||.|+++|
T Consensus 2 ~~~ILfVC~gN~cRSpmAEa~~~~~~~---------------------------~~~v~SaG~~~~-~g~~~~~~a~~~l 53 (144)
T PRK11391 2 FNSILVVCTGNICRSPIGERLLRKRLP---------------------------GVKVKSAGVHGL-VKHPADATAADVA 53 (144)
T ss_pred CCeEEEEcCCcHhHHHHHHHHHHHhcC---------------------------CeEEEcccccCC-CCCCCCHHHHHHH
Confidence 368999999999999999999998863 267778888764 6899999999999
Q ss_pred HhCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHH
Q psy4895 328 AKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDA 406 (430)
Q Consensus 328 ~e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~ 406 (430)
+++|||++ |++++|+++++.+||+|||||.+|++.+.+.+|. ...|++++++|.+. .+|+||||++ .++
T Consensus 54 ~~~Gid~~~h~s~~lt~~~~~~~DlIl~M~~~~~~~l~~~~p~-------~~~k~~~l~~~~~~--~~I~DPy~~~-~~~ 123 (144)
T PRK11391 54 ANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPE-------VRGKTMLFGQWLEQ--KEIPDPYRKS-QDA 123 (144)
T ss_pred HHcCCCcCCCccCcCCHHHHhhCCEEEECCHHHHHHHHHHCCC-------CcCeEEehhHhCCC--CCCCCCccCC-HHH
Confidence 99999997 8999999999999999999999999999887762 34689898988654 3799999985 899
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4895 407 FDICYEHCYRSCEQFLNKVE 426 (430)
Q Consensus 407 f~~~~~~I~~~i~~ll~~l~ 426 (430)
|++++++|+++|+.|+++|+
T Consensus 124 f~~~~~~I~~~i~~ll~~l~ 143 (144)
T PRK11391 124 FEHVYGMLERASQEWAKRLS 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 4
>PRK10126 tyrosine phosphatase; Provisional
Probab=100.00 E-value=2e-35 Score=261.64 Aligned_cols=143 Identities=29% Similarity=0.540 Sum_probs=126.5
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLA 328 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~ 328 (430)
++|||||+||+|||||||+|+|++.. +++|+||||.++ .|.++|+.|+++|+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~---------------------------~~~v~SAG~~~~-~g~~~~~~a~~~l~ 54 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP---------------------------ELKVESAGLGAL-VGKGADPTAISVAA 54 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC---------------------------CeEEEeeeccCC-CCCCCCHHHHHHHH
Confidence 68999999999999999999999863 267888888874 79999999999999
Q ss_pred hCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHH
Q psy4895 329 KHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAF 407 (430)
Q Consensus 329 e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f 407 (430)
++|||++ |++++++++++.+||+|||||.+|++.+...+|. ...|+.++++|++. .+|+||||++ .++|
T Consensus 55 ~~Gid~~~h~sr~lt~~~~~~~DlIl~Md~~~~~~l~~~~p~-------~~~k~~~l~~~~~~--~~I~DP~~~~-~~~f 124 (147)
T PRK10126 55 EHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPE-------MRGKVMLFGHWDNE--CEIPDPYRKS-REAF 124 (147)
T ss_pred HcCCCcCCCccccCCHHHhccCCEEEECCHHHHHHHHHhcCc-------ccCcEEehhhhCCC--CCCCCCCCCC-HHHH
Confidence 9999997 9999999999999999999999999988776652 34688888899654 3799999985 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy4895 408 DICYEHCYRSCEQFLNKVEKNE 429 (430)
Q Consensus 408 ~~~~~~I~~~i~~ll~~l~~~~ 429 (430)
++++++|+++|..|+++|....
T Consensus 125 ~~~~~~I~~~i~~l~~~l~~~~ 146 (147)
T PRK10126 125 EAVYTLLERSARQWAQALNAEQ 146 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998654
No 5
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-35 Score=255.40 Aligned_cols=137 Identities=42% Similarity=0.708 Sum_probs=114.7
Q ss_pred cceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHH
Q psy4895 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVL 327 (430)
Q Consensus 248 ~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L 327 (430)
+++|||||+||+|||||||+|||++++ + +|+|+||||.. |.|+++||+|+++|
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~-----~---------------------~~~v~SAGt~~-~~g~~~~~~a~~vl 54 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAP-----D---------------------NVEVDSAGTGG-HPGEPPDPRAVEVL 54 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhcc-----C---------------------CeEEECCccCC-CCCCCCCHHHHHHH
Confidence 478999999999999999999999985 2 46777777765 56999999999999
Q ss_pred HhCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHH
Q psy4895 328 AKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDA 406 (430)
Q Consensus 328 ~e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~ 406 (430)
+++|||++ |++|+++++++++||+|||||++|++.+..++|. .........| +|+||||++ .+.
T Consensus 55 ~e~Gid~~~~~~k~i~~~~~~~~DlIitmd~~~~~~~~~~~p~--------~~~~~~~~~~------~v~DP~~~~-~e~ 119 (139)
T COG0394 55 AEHGIDISGHRSKQLTEEDFDEFDLIITMDESNAADLCPLAPG--------NTLLLEYEHW------EVPDPYYGS-GEE 119 (139)
T ss_pred HHcCCCcCCccCccCchhhhhhCCEEEEeChHHHhhHhhcCcc--------ccccccccCC------CCCCCCCCc-hHH
Confidence 99999998 9999999999999999999999999888766541 0001111113 699999985 589
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy4895 407 FDICYEHCYRSCEQFLNKVE 426 (430)
Q Consensus 407 f~~~~~~I~~~i~~ll~~l~ 426 (430)
|+++|++|+.+|++|+++|.
T Consensus 120 ~~~~~~~i~~~~~~l~~~l~ 139 (139)
T COG0394 120 FEEVYRLIEDAIKALLKRLL 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999873
No 6
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=100.00 E-value=4.5e-34 Score=251.02 Aligned_cols=139 Identities=42% Similarity=0.756 Sum_probs=120.7
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhC
Q psy4895 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKH 330 (430)
Q Consensus 251 ~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~ 330 (430)
|||||+||+|||||||+|||++++ ++++|.||||.++ .|.++|+.|+++|+++
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~--------------------------~~~~v~SAG~~~~-~g~~~~~~a~~~l~~~ 53 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVG--------------------------DRVKIDSAGTGAW-VGGGADPRAVEVLKEH 53 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcC--------------------------CCEEEEcCcccCC-CCCCCCHHHHHHHHHc
Confidence 699999999999999999999873 2377888888854 5899999999999999
Q ss_pred CCCCCCcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHHHHH
Q psy4895 331 NVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDIC 410 (430)
Q Consensus 331 Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f~~~ 410 (430)
|||+++++++++++++.++|+||+||+.+++.+...+|. ....|+++|++|.+....+|+|||+++ .++|+++
T Consensus 54 Gid~~~~~~~l~~~~~~~~DlIv~m~~~~~~~~~~~~p~------~~~~kv~~~~~~~~~~~~dI~DP~~~~-~~~f~~~ 126 (140)
T smart00226 54 GIALSHHASQLTSSDFKNADLVLAMDHSHLRNICRLKPR------VSRAKVELFGEYVTGSHGDVDDPYYGG-IDGFEQV 126 (140)
T ss_pred CcCccceeccCCHHHHHhCCEEEEeCHHHHHHHHHHccc------cccceeEeHhhhCcCCCCcCCCCCCCC-hHHHHHH
Confidence 999997777999999999999999999998877766552 124699999999875556899999984 8899999
Q ss_pred HHHHHHHHHHHHH
Q psy4895 411 YEHCYRSCEQFLN 423 (430)
Q Consensus 411 ~~~I~~~i~~ll~ 423 (430)
+++|+++|+.|++
T Consensus 127 ~~~I~~~i~~ll~ 139 (140)
T smart00226 127 YDELENALQEFLK 139 (140)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999986
No 7
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=100.00 E-value=2.7e-33 Score=245.43 Aligned_cols=137 Identities=38% Similarity=0.661 Sum_probs=119.2
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhC
Q psy4895 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKH 330 (430)
Q Consensus 251 ~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~ 330 (430)
|||||+||+|||||||+||++++.++ ++ ++++|+||||..+ .|.++||.|+++|+++
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~-~~---------------------~~~~v~SAG~~~~-~~~~~~~~a~~~l~~~ 57 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQR-LG---------------------DRFEVESAGTEAW-PGEPVDPRAIAVLKEH 57 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHT-HT---------------------TTEEEEEEESSST-TTSSSTHHHHHHHHHT
T ss_pred CEEEeCCCcchHHHHHHHHHHhcccc-cc---------------------CCcEEEEEeeccc-ccccccchHHHHHHHh
Confidence 79999999999999999999998865 32 3578888888854 5899999999999999
Q ss_pred CCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHHHH
Q psy4895 331 NVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDI 409 (430)
Q Consensus 331 Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f~~ 409 (430)
|||++ |++++++++++.+||+|||||+++.+.+...+|. ....|+.+|+.. .+|+|||+++ .+.|++
T Consensus 58 gid~~~~~s~~l~~~~~~~~D~Ii~m~~~~~~~~~~~~~~------~~~~kv~~l~~~-----~~I~DP~~~~-~~~f~~ 125 (138)
T PF01451_consen 58 GIDISGHRSRQLTEEDLDEADLIITMDDSHREELCPLFPG------DYRAKVFLLGEH-----WDIPDPYGGS-LEAFRR 125 (138)
T ss_dssp TSSCTTSBBCBGGHHHHHHSSEEEESSHHHHHHHHHHHGT------TGGGCEEEGGGE-----SSS-HHTTSS-HHHHHH
T ss_pred CCCcccceeccccccccccCCEEEEccHHHhhhhhhhcch------hhhhhheecccc-----CcCCCCCCCC-HHHHHH
Confidence 99998 9999999999999999999999999888887773 134689888752 3699999985 899999
Q ss_pred HHHHHHHHHHHHH
Q psy4895 410 CYEHCYRSCEQFL 422 (430)
Q Consensus 410 ~~~~I~~~i~~ll 422 (430)
++++|+++|+.|+
T Consensus 126 ~~~~I~~~~~~ll 138 (138)
T PF01451_consen 126 VRDQIERRVKALL 138 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 8
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=100.00 E-value=7.5e-33 Score=243.58 Aligned_cols=140 Identities=45% Similarity=0.737 Sum_probs=120.5
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLA 328 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~ 328 (430)
++|||||++|+|||||||+|+|+++.+ . +++|.|||+.|.+.|.++++.|+++|+
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~----~---------------------~~~v~SaG~~~~~~g~~~~~~a~~~l~ 55 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPK----L---------------------DIEVDSAGTSGWHVGGRPDPRAIAVLA 55 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhh----C---------------------CEEEECCCCCCccCCCCCCHHHHHHHH
Confidence 379999999999999999999999852 1 367788888885558899999999999
Q ss_pred hCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHH
Q psy4895 329 KHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAF 407 (430)
Q Consensus 329 e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f 407 (430)
++|||++ |+++++++.++.++|+||+||+.+.+.+...+| ....|+++|++|.. ..+|+|||+++ .++|
T Consensus 56 ~~Gid~s~h~s~~l~~~~~~~aDlIi~m~~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~~~i~DP~~~~-~~~f 125 (141)
T cd00115 56 EHGIDISGHRARQLTEDDFDEFDLIITMDESNLAELLEPPP-------GGRAKVELLGEYAG--DREVPDPYYGS-LEAF 125 (141)
T ss_pred HcCCCcccCeeeeCCHHHHHhCCEEEEECHHHHHHHHhcCC-------CCcceEEeHhhhCc--CCCCCCCCCCC-hHHH
Confidence 9999997 999999999999999999999999888764333 13468999999973 25799999985 8999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4895 408 DICYEHCYRSCEQFLN 423 (430)
Q Consensus 408 ~~~~~~I~~~i~~ll~ 423 (430)
++++++|+++|+.|++
T Consensus 126 ~~~~~~I~~~v~~l~~ 141 (141)
T cd00115 126 EEVYDLIEEAIKALLK 141 (141)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999874
No 9
>PRK13530 arsenate reductase; Provisional
Probab=99.97 E-value=5.9e-31 Score=228.99 Aligned_cols=128 Identities=22% Similarity=0.338 Sum_probs=104.5
Q ss_pred ccceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHH
Q psy4895 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDV 326 (430)
Q Consensus 247 s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~ 326 (430)
+.++|||||+||+|||||||+||+++++ + ++.|+|||+.+ .++||.|+++
T Consensus 2 ~~~~vLFvC~~N~cRS~mAEal~~~~~~-----~---------------------~~~v~SAG~~~----~~~~~~a~~~ 51 (133)
T PRK13530 2 NKKTIYFLCTGNSCRSQMAEGWGKQYLG-----D---------------------KWNVYSAGIEA----HGVNPNAIKA 51 (133)
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHHhcC-----C---------------------CEEEECCCCCC----CCCCHHHHHH
Confidence 4689999999999999999999998863 2 36777888776 4799999999
Q ss_pred HHhCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCC-CCeEEEecccCCCCCCccCCCCCCCch
Q psy4895 327 LAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKP-NAKILYLGDYDPKGVKIVEDPYYSRAK 404 (430)
Q Consensus 327 L~e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~-~~kv~~~~~~~p~~~~di~DP~~~~~~ 404 (430)
|+++|||++ |++++++++++.+||+||+||+ +.+++ +|. .+ .....+| +|+|||+.+ .
T Consensus 52 l~e~Gi~~~~~~s~~l~~~~~~~~D~ii~m~~-~~~~~---~~~------~p~~~~~~~w---------~i~DP~~~~-~ 111 (133)
T PRK13530 52 MKEVGIDISNQTSDIIDNDILNNADLVVTLCS-HADDV---CPS------TPPHVKRVHW---------GFDDPAGKE-W 111 (133)
T ss_pred HHHcCCCcCCCccccCChhHhccCCEEEEech-Hhhhh---ccc------cCCCceEEEC---------CCCCCCCCc-H
Confidence 999999997 8999999999999999999994 43433 231 12 1233344 389999885 8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4895 405 DAFDICYEHCYRSCEQFLNK 424 (430)
Q Consensus 405 ~~f~~~~~~I~~~i~~ll~~ 424 (430)
++|++++++|+++|+.|++.
T Consensus 112 ~~f~~~~~~I~~~v~~l~~~ 131 (133)
T PRK13530 112 SEFQRVRDEIGERIKRFAET 131 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999763
No 10
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=99.97 E-value=1e-30 Score=225.73 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=102.2
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLA 328 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~ 328 (430)
++|||||+||+|||||||+|+|++.+ + +++|.||||.+ .++||.|+++|+
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~-----~---------------------~~~v~SAG~~~----~~~~p~a~~~l~ 50 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGA-----G---------------------NIAVTSAGLEV----SRVHPTAIEVMS 50 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcC-----C---------------------CEEEEcCcCCC----CCCCHHHHHHHH
Confidence 47999999999999999999999863 2 36777777775 589999999999
Q ss_pred hCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHH
Q psy4895 329 KHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAF 407 (430)
Q Consensus 329 e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f 407 (430)
++|||++ |+++++++.++.+||+|||||+.+.. +|. ...+...+.+| +|+|||+++ .++|
T Consensus 51 e~Gid~~~~~s~~l~~~~~~~~D~iitm~~~~~~-----~p~-------~~~~~~~~~~w------~i~DP~~~~-~~~f 111 (126)
T TIGR02689 51 EIGIDISGQTSKPLENFHPEDYDVVISLCGCGVN-----LPE-------AWVTREIFEDW------QLEDPDGQS-IEVF 111 (126)
T ss_pred HhCCCcccCccccCChhHhcCCCEEEEeCCCccc-----CCC-------ccCCCceeecC------CCCCCCCCc-HHHH
Confidence 9999997 99999999999999999999987642 331 11222233445 489999874 8999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4895 408 DICYEHCYRSCEQFL 422 (430)
Q Consensus 408 ~~~~~~I~~~i~~ll 422 (430)
++++++|+++|+.|+
T Consensus 112 ~~~~~~I~~~v~~l~ 126 (126)
T TIGR02689 112 RRVRDEIKERVVNLI 126 (126)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999874
No 11
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.97 E-value=1.8e-30 Score=239.98 Aligned_cols=170 Identities=31% Similarity=0.457 Sum_probs=119.0
Q ss_pred ceEEeCCCCCHHHHHHHHHHHhcCCCCccccc--------ccc-e----EEEe--cCcCCCCC------CCCCCChhHHH
Q psy4895 64 TVYYIPDFITREEESHLLNKIYSVPKPKWTQL--------SNR-K----LQNW--GGIPHPKG------MIAEKLPEWLD 122 (430)
Q Consensus 64 Gl~~ipdfls~~ee~~Ll~~l~~~~~~~w~~~--------~~r-r----~~~~--G~~~~~~~------~~~~~~P~~l~ 122 (430)
|++|+|||||++|++.|++++.+.. .|.+. ..+ + +... |..|.+++ ....++|++|.
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESA--PFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS----B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhC--CCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 8999999999999999999999543 23211 111 1 1222 23344433 23678999999
Q ss_pred HHHHHHHhcCC-CCCCCCceEEEeeecCCCCCCCCCCCC--CCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCC
Q psy4895 123 TYLERINQLGV-FESVKPNHVLINEYLAGQGIMPHFDGP--LYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDAR 199 (430)
Q Consensus 123 ~l~~rl~~~~~-~~~~~pn~~lvN~Y~~G~~I~~H~D~~--~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~g 199 (430)
.+++++.+... .+...||+|+||+|.+|++|++|+|+. .++++|++||||++|+|.|++... ..+.+.+.|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~---~~~~~~~~L~~g 155 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD---DDEPIEVPLPPG 155 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG---TS-EEEEEE-TT
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeeccC---CCccEEEEcCCC
Confidence 99999977543 447899999999999999999999995 479999999999999999998753 368999999999
Q ss_pred eEEEecchhhccccccccCCCCCCCccccccccCCCCCcccccccccccceE
Q psy4895 200 SLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAV 251 (430)
Q Consensus 200 SlliMsG~aR~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~l~r~~R~s~t~~ 251 (430)
|||||+|++|+.| |+|++.+.+..+. .+.++.|+|+||+
T Consensus 156 sl~vm~g~~r~~~-H~I~~~~~~~~~~------------~~~~~~RislTfR 194 (194)
T PF13532_consen 156 SLLVMSGEARYDW-HGIPPVKKDTHPS------------HYVRGRRISLTFR 194 (194)
T ss_dssp EEEEEETTHHHHE-EEE-S-SCEEEES------------TEE-S-EEEEEEE
T ss_pred CEEEeChHHhhhe-eEcccccCCcccc------------ccCCCCEEEEEeC
Confidence 9999999999999 9999987643221 1578999999985
No 12
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.96 E-value=2.5e-28 Score=226.14 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=134.9
Q ss_pred ccCCCceEEeCCCCCHHHHHHHHHHHhcCC-CCcccccc-------cceEE-----Ee-----cCcCCC----CCCCCCC
Q psy4895 59 KKAPPTVYYIPDFITREEESHLLNKIYSVP-KPKWTQLS-------NRKLQ-----NW-----GGIPHP----KGMIAEK 116 (430)
Q Consensus 59 ~~lp~Gl~~ipdfls~~ee~~Ll~~l~~~~-~~~w~~~~-------~rr~~-----~~-----G~~~~~----~~~~~~~ 116 (430)
..+.+|..++|+|. .++++.|++.|.+.. ..+|.+.. .-|+. .| ||.|+. ++..+.+
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 45778999999995 899999999988721 12454211 11222 22 344442 2334677
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCC--CCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEE
Q psy4895 117 LPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDG--PLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSI 194 (430)
Q Consensus 117 ~P~~l~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~--~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l 194 (430)
+|++|..|.+++.....+..+.||+||||+|.+|++|++|+|+ ..++++|+|||||++|+|.|++... ..++.++
T Consensus 93 ~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~---~~~~~~l 169 (213)
T PRK15401 93 MPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKR---SDPLQRI 169 (213)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEecccCC---CCceEEE
Confidence 8889999999998776666789999999999999999999997 4688999999999999999997653 2567899
Q ss_pred EeCCCeEEEecchhhccccccccCCCCCCCccccccccCCCCCcccccccccccceEE
Q psy4895 195 FVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVL 252 (430)
Q Consensus 195 ~L~~gSlliMsG~aR~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~l~r~~R~s~t~~l 252 (430)
.|++|||+||+|++|+.| |+|++++..+.+ +....|||+||+.
T Consensus 170 ~L~~Gdllvm~G~sr~~~-HgVp~~~~~~~p--------------~~g~~RINLTFR~ 212 (213)
T PRK15401 170 LLEHGDVVVWGGPSRLRY-HGILPLKAGEHP--------------LTGECRINLTFRK 212 (213)
T ss_pred EeCCCCEEEECchHhhee-ccCCcCCCCcCC--------------CCCCCeEEEEeEc
Confidence 999999999999999855 999998754321 2456899999974
No 13
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=99.96 E-value=2.6e-29 Score=217.50 Aligned_cols=122 Identities=21% Similarity=0.297 Sum_probs=97.6
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhC
Q psy4895 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKH 330 (430)
Q Consensus 251 ~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~ 330 (430)
|||||+||+|||||||+|++++++ + ++.|.|||+.+ .++||.|+++|+++
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~-----~---------------------~~~v~SaG~~~----~~~~~~a~~~l~e~ 50 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLG-----D---------------------EWEVYSAGIEA----HGLNPNAVKAMKEV 50 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcC-----C---------------------CEEEEcCCCCC----CCcCHHHHHHHHHc
Confidence 699999999999999999999863 2 36777777765 57999999999999
Q ss_pred CCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCC-CeEEEecccCCCCCCccCCCCCCCc-----
Q psy4895 331 NVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPN-AKILYLGDYDPKGVKIVEDPYYSRA----- 403 (430)
Q Consensus 331 Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~-~kv~~~~~~~p~~~~di~DP~~~~~----- 403 (430)
|||++ |++++++++++.+||+|||||+.+.+. +|. .+. .+..+| +|+||++.+.
T Consensus 51 Gid~~~~~~~~l~~~~~~~~D~vitm~~~~~~~----~~~------~p~~~~~~~w---------~i~DP~~~~g~~~~~ 111 (129)
T TIGR02691 51 GIDISNQTSDLIDLDILNKADLVVTLCGDARDK----CPA------TPPHVKREHW---------GLDDPARAEGTEEEK 111 (129)
T ss_pred CCCcCCcccccCChhhcccCCEEEEeCchhccC----CCc------cCCCCeEEEC---------CCCCCCCCCCCHHHH
Confidence 99997 899999999999999999999544332 231 122 233455 3899987631
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy4895 404 KDAFDICYEHCYRSCEQF 421 (430)
Q Consensus 404 ~~~f~~~~~~I~~~i~~l 421 (430)
.++|++++++|+++|..|
T Consensus 112 ~~~~~~~~~~I~~~v~~l 129 (129)
T TIGR02691 112 WAVFRRVRDEIKERVKDF 129 (129)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 779999999999999865
No 14
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.93 E-value=3.3e-25 Score=199.55 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=113.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCC-Cccccc--------ccceEE-----Ee--cCcCCCCCC------CCCCChhHHHHHHH
Q psy4895 69 PDFITREEESHLLNKIYSVPK-PKWTQL--------SNRKLQ-----NW--GGIPHPKGM------IAEKLPEWLDTYLE 126 (430)
Q Consensus 69 pdfls~~ee~~Ll~~l~~~~~-~~w~~~--------~~rr~~-----~~--G~~~~~~~~------~~~~~P~~l~~l~~ 126 (430)
.+++...++..|++.+..... -+|.+. +.+|+. ++ |+.|++++. ...+||++|..|.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~~ 81 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCE 81 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcCeEecCCeEeeehhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHHH
Confidence 578888999999988776432 246531 112222 22 667776654 23458899999999
Q ss_pred HHHhcCCCCCCCCceEEEeeecCCCCCCCCCCCC--CCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEe
Q psy4895 127 RINQLGVFESVKPNHVLINEYLAGQGIMPHFDGP--LYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLIL 204 (430)
Q Consensus 127 rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~~--~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliM 204 (430)
++++...+....||+||||+|++|++|++|+|.+ .++++|+|||||++|+|.|+++.. ...+.++.|++||||||
T Consensus 82 ~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~---~~~~~~l~L~sGsllvM 158 (169)
T TIGR00568 82 RVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKR---NDPPKRLRLHSGDVVIM 158 (169)
T ss_pred HHHHHhCCCCCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcC---CCceEEEEeCCCCEEEE
Confidence 9988765566799999999999999999999983 467999999999999999998754 35688999999999999
Q ss_pred cchhhccccccc
Q psy4895 205 QDDMYEKYVHGI 216 (430)
Q Consensus 205 sG~aR~~w~H~I 216 (430)
+|++|+.| |||
T Consensus 159 ~G~sR~~~-Hgv 169 (169)
T TIGR00568 159 GGESRLAF-HGV 169 (169)
T ss_pred CCchhccc-cCC
Confidence 99999965 997
No 15
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.88 E-value=6.4e-22 Score=179.89 Aligned_cols=157 Identities=16% Similarity=0.235 Sum_probs=109.5
Q ss_pred ccCCCceEEeCCCCCHHHHHHHHHHHhcCC-CCccc---------ccccceEEEecCcCC-----CCCC---CCCCChhH
Q psy4895 59 KKAPPTVYYIPDFITREEESHLLNKIYSVP-KPKWT---------QLSNRKLQNWGGIPH-----PKGM---IAEKLPEW 120 (430)
Q Consensus 59 ~~lp~Gl~~ipdfls~~ee~~Ll~~l~~~~-~~~w~---------~~~~rr~~~~G~~~~-----~~~~---~~~~~P~~ 120 (430)
.++++|+.+.++|+ -.++..+++.+.... ..+|. .++-.| .+||.++ ++.. ...++|++
T Consensus 11 ~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r--~~~W~~d~~gy~y~~~~p~~~~p~p~l 87 (194)
T COG3145 11 RQLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPR--LLGWVTDRRGYRYSLRSPLTGKPWPPL 87 (194)
T ss_pred ccCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeee--ccceecccccccccccccCCCCCCCcc
Confidence 35667999999999 444445544433321 11342 122222 3555444 2221 12344443
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCCCCCC--CceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCC
Q psy4895 121 LDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYY--PTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDA 198 (430)
Q Consensus 121 l~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~~~~~--~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~ 198 (430)
+. +...+.....++.+.|++||||+|+||++|++|+|...++ ++|+|||||++|+|.|++..+ ..+..++.|.+
T Consensus 88 ~~-~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r---~~~~~~~~L~~ 163 (194)
T COG3145 88 LA-LFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR---RGPGLRLRLEH 163 (194)
T ss_pred HH-HHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC---CCCceeEEecC
Confidence 33 3333333444557899999999999999999999995443 569999999999999999874 37899999999
Q ss_pred CeEEEecchhhccccccccCCCCC
Q psy4895 199 RSLLILQDDMYEKYVHGISSKTDD 222 (430)
Q Consensus 199 gSlliMsG~aR~~w~H~I~~~~~d 222 (430)
||++||+|.+|+.|.|.||++...
T Consensus 164 Gdvvvm~G~~r~~~~h~~p~~~~~ 187 (194)
T COG3145 164 GDVVVMGGPSRLAWHHIIPKTSRL 187 (194)
T ss_pred CCEEEecCCccccccccccccccC
Confidence 999999999999999999997653
No 16
>KOG4176|consensus
Probab=99.86 E-value=2.5e-21 Score=189.06 Aligned_cols=218 Identities=18% Similarity=0.168 Sum_probs=160.1
Q ss_pred CCceeeccCCcChHHHHHHHH-HHhhcccccCCCCcccc-----------ccccccCCCceEEeCCCCCHHHHHHHHHHH
Q psy4895 17 PPTVYYIPDFITREEESHLLN-KIYSHNLLMTGNNVNVE-----------KYVIKKAPPTVYYIPDFITREEESHLLNKI 84 (430)
Q Consensus 17 p~~~~yip~fi~~~ee~~ll~-~i~~~~~~~~~~~~~l~-----------~~~~~~lp~Gl~~ipdfls~~ee~~Ll~~l 84 (430)
|++-++...-++.+|++.-.. .........+.....+. .+..-..|..+.+++||+++.+++.+...+
T Consensus 70 ~~s~~~~~~~~~~e~~~~~~~~~~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~ 149 (323)
T KOG4176|consen 70 PGSEDSLFRELYSEESRLRYRTDANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGAL 149 (323)
T ss_pred CCcccchhhhhchhhhhhhhhhhccccccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhccc
Confidence 445566666666666655544 22222222222211111 111222333499999999999999999999
Q ss_pred hcCCCCcccccccceEEEecCcCCCCC------CCCCCChhHHHHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCC
Q psy4895 85 YSVPKPKWTQLSNRKLQNWGGIPHPKG------MIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFD 158 (430)
Q Consensus 85 ~~~~~~~w~~~~~rr~~~~G~~~~~~~------~~~~~~P~~l~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D 158 (430)
..+.+.-|.+.++|++.+||+.+.+.. ....|+|..++.+++|+..+..++. .||+|+||+|.+|++|.||+|
T Consensus 150 ~~e~~~~~~~gk~R~~iq~G~~f~y~~~~~d~~~~~~piPs~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~ 228 (323)
T KOG4176|consen 150 VDETFTYQESGKHREVIQLGYPFDYRTNNVDESKPVDPIPSLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHID 228 (323)
T ss_pred ccccceeeccccceeeeecCceeccCCCcccccCccCCCchHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCC
Confidence 887643455699999999998765421 1267899999999999999999977 899999999999999999998
Q ss_pred CCCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhccccccccCCCCCCCccccccccCCCCCc
Q psy4895 159 GPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQ 238 (430)
Q Consensus 159 ~~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~H~I~~~~~d~~~~~~~~~~~~~~~~ 238 (430)
.+.|+++|+++||.|+|+|.|++.... .....+.. .|++++||.|.|.|+.+..|+.+-..
T Consensus 229 ~~~F~~Pi~slS~lSe~~m~Fg~~~~~----~~~~~~~g-----~~s~p~~~g~~lvi~~~~ad~~~~~~---------- 289 (323)
T KOG4176|consen 229 HSAFLDPISSLSFLSECTMEFGHGLLS----DNIGNFRG-----SLSLPLRYGSVLVIRGRSADVAPHCI---------- 289 (323)
T ss_pred hHHhcCceEEEEeecceeEEecccccc----cCcccccc-----ccccccccCeEEEeCCCccccccccc----------
Confidence 899999999999999999999997641 22222222 78889999999999998888764321
Q ss_pred ccccccccccceEEEe
Q psy4895 239 MLNRSTRAGKKAVLFV 254 (430)
Q Consensus 239 ~l~r~~R~s~t~~lf~ 254 (430)
...|..|+|+||+.+.
T Consensus 290 ~~~~~kRisitfrki~ 305 (323)
T KOG4176|consen 290 RPSRNKRISITFRKIR 305 (323)
T ss_pred CCCCCceEEEEEEEec
Confidence 1279999999998664
No 17
>KOG3959|consensus
Probab=99.79 E-value=1.5e-20 Score=171.44 Aligned_cols=154 Identities=27% Similarity=0.416 Sum_probs=126.5
Q ss_pred CceEEeCCCCCHHHHHHHHHHHhcCCCCccc-ccccceEEEecCcCCCCCC--C---CCCChhHHHHHHHHHHhcCCCCC
Q psy4895 63 PTVYYIPDFITREEESHLLNKIYSVPKPKWT-QLSNRKLQNWGGIPHPKGM--I---AEKLPEWLDTYLERINQLGVFES 136 (430)
Q Consensus 63 ~Gl~~ipdfls~~ee~~Ll~~l~~~~~~~w~-~~~~rr~~~~G~~~~~~~~--~---~~~~P~~l~~l~~rl~~~~~~~~ 136 (430)
+|+.++.||+|++|+++|++.++..+ |. +.++||.|.||...+++.. . -..||.+-..+..|+....++.+
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~p---W~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~P~~~~~v~rrm~~yp~l~g 148 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVP---WAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGMPEYADMVLRRMSEYPVLKG 148 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCc---hhhhcccccccccCCccchhhhhhccCcccCCchHHHHHHHHhhccchhhc
Confidence 59999999999999999999999985 97 7899999999998876432 1 36799999999999999877766
Q ss_pred CCCceEEEeeecC--CCCCCCCCCC-CCCCCceEEEcCCCceEEEEecCCCC--C-------------------------
Q psy4895 137 VKPNHVLINEYLA--GQGIMPHFDG-PLYYPTISTISCGSHTILNFYEPDRT--S------------------------- 186 (430)
Q Consensus 137 ~~pn~~lvN~Y~~--G~~I~~H~D~-~~~~~~Ia~lSLgs~~~m~f~~~~~~--~------------------------- 186 (430)
++|=...-.+|.| |..|.||+|+ ..||..++++.+.++.+..+.++.-. +
T Consensus 149 fqp~EqCnLeYep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~ 228 (306)
T KOG3959|consen 149 FQPFEQCNLEYEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVM 228 (306)
T ss_pred cCcHHHcCcccccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhhccceeeeccCccccccccchhhcccchh
Confidence 6544333458888 6799999999 89999999988777766665532211 0
Q ss_pred --CCCeeEEEEeCCCeEEEecchhhccccccccCC
Q psy4895 187 --EGSEVCSIFVDARSLLILQDDMYEKYVHGISSK 219 (430)
Q Consensus 187 --~~~~~~~l~L~~gSlliMsG~aR~~w~H~I~~~ 219 (430)
.....+.|.+|++||++|.|+|||.|+|+|.+.
T Consensus 229 ~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~ 263 (306)
T KOG3959|consen 229 TLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRH 263 (306)
T ss_pred hhccceEEEeecCcceeEEeechhHhhHHHHHHHH
Confidence 456778999999999999999999999999985
No 18
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.01 E-value=4.3e-10 Score=88.68 Aligned_cols=106 Identities=24% Similarity=0.309 Sum_probs=75.7
Q ss_pred cceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHH
Q psy4895 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVL 327 (430)
Q Consensus 248 ~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L 327 (430)
+.++||+|..|--|||.||-+|.+.- +++++|||+.++ +
T Consensus 1 m~r~lficsrnrlrsptae~~Fa~~~----------------------------~vetdSAGl~~d--A----------- 39 (109)
T COG4551 1 MKRILFICSRNRLRSPTAEVMFATWP----------------------------GVETDSAGLAHD--A----------- 39 (109)
T ss_pred CceEEEEeccccccCcchhHHhhcCC----------------------------CCcccccccccc--c-----------
Confidence 46899999999999999999886542 478899998863 2
Q ss_pred HhCCCCCCCcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHH
Q psy4895 328 AKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAF 407 (430)
Q Consensus 328 ~e~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f 407 (430)
-.+++.+.+.++|+|++|+..|++.+.+.+..+. .+.++.-+ ||||-|.--.
T Consensus 40 ----------e~Plt~e~leWAdiIfVMEr~HrqkL~krf~~~l-----k~kRviCL---------DIPDdy~yMq---- 91 (109)
T COG4551 40 ----------ETPLTREQLEWADIIFVMERVHRQKLQKRFKASL-----KGKRVICL---------DIPDDYEYMQ---- 91 (109)
T ss_pred ----------CCCccHHHhhhhhhhhhHHHHHHHHHHHHhhHHh-----cCCeEEEE---------eCCchHhhcC----
Confidence 3467888999999999999999999875553222 12344332 6888884211
Q ss_pred HHHHHHHHHHHHHHH
Q psy4895 408 DICYEHCYRSCEQFL 422 (430)
Q Consensus 408 ~~~~~~I~~~i~~ll 422 (430)
-+..+.+++++-.++
T Consensus 92 ~eLi~lLkrkv~p~L 106 (109)
T COG4551 92 PELIDLLKRKVGPYL 106 (109)
T ss_pred HHHHHHHHHhhhhhh
Confidence 235666776665554
No 19
>KOG2731|consensus
Probab=98.29 E-value=7.8e-07 Score=87.06 Aligned_cols=118 Identities=13% Similarity=-0.004 Sum_probs=87.6
Q ss_pred cceEEEecCcCCCCCC--------CCCCChhHHH-HHHHHHHhcCCCCC-CCCceEEEeeecCCCCCCCCCCC--CCCCC
Q psy4895 97 NRKLQNWGGIPHPKGM--------IAEKLPEWLD-TYLERINQLGVFES-VKPNHVLINEYLAGQGIMPHFDG--PLYYP 164 (430)
Q Consensus 97 ~rr~~~~G~~~~~~~~--------~~~~~P~~l~-~l~~rl~~~~~~~~-~~pn~~lvN~Y~~G~~I~~H~D~--~~~~~ 164 (430)
+.|+++.|..++.... ...-+|+++. ....++.....|.. ..++.+|+|+|.+++.++.|.|. ...+.
T Consensus 164 KlRw~T~G~~~dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~~~ 243 (378)
T KOG2731|consen 164 KLRWVTLGNQYDWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDLSK 243 (378)
T ss_pred hhcccccccccCCccccccccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhcccCC
Confidence 3456666776652211 1234555554 44455555554533 35555799999999999999999 36678
Q ss_pred ceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhccccccccC
Q psy4895 165 TISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISS 218 (430)
Q Consensus 165 ~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~H~I~~ 218 (430)
++.+.|||..+++.++..... ..+..++|+.|+++||.|.+|..+ |+|+.
T Consensus 244 pf~s~s~g~~ai~lLg~m~l~---e~p~p~~lrsGdv~im~Gfsrlv~-haIp~ 293 (378)
T KOG2731|consen 244 PFYSPSLGQGAILLLGMMCLG---ENPDPMTLRSGDVVIMDGFSRLVE-HAIPE 293 (378)
T ss_pred ccccccccccceeeecccccC---CCCCccccccCceEeecchHHHHh-hccch
Confidence 899999999999999987642 678899999999999999999975 99994
No 20
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.61 E-value=0.00081 Score=63.63 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=76.9
Q ss_pred eEEeCCCCCHHHHHHHHHHHhcCCCCcccccccceEEEecC-cCCCCCCCCCCChhHHHH----HHHHHHhcCCCC-CCC
Q psy4895 65 VYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGG-IPHPKGMIAEKLPEWLDT----YLERINQLGVFE-SVK 138 (430)
Q Consensus 65 l~~ipdfls~~ee~~Ll~~l~~~~~~~w~~~~~rr~~~~G~-~~~~~~~~~~~~P~~l~~----l~~rl~~~~~~~-~~~ 138 (430)
+..|||+||++|.+.+++.+.... |.. .+..+.++. .+..+......-| .... |.+++.....|. ...
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~---~~d--g~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l~~sa~l 75 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAE---WVD--GRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPLFFSAAL 75 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcC---Ccc--CCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCchhhhhcc
Confidence 578999999999999999998763 652 222221111 1112222222223 3233 333443333331 122
Q ss_pred Cc---eEEEeeecCCCCCCCCCCCCCC---C--Cce-----EEEcCCC-----ceEEEEecCCCCCCCCeeEEEEeCCCe
Q psy4895 139 PN---HVLINEYLAGQGIMPHFDGPLY---Y--PTI-----STISCGS-----HTILNFYEPDRTSEGSEVCSIFVDARS 200 (430)
Q Consensus 139 pn---~~lvN~Y~~G~~I~~H~D~~~~---~--~~I-----a~lSLgs-----~~~m~f~~~~~~~~~~~~~~l~L~~gS 200 (430)
|. ..++|.|.+|+..++|+|+... + ..+ +.|-|.. .....|.. ......|.++.|+
T Consensus 76 p~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~------~~g~~~Vkp~aG~ 149 (226)
T PRK05467 76 PRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIED------TYGEHRVKLPAGD 149 (226)
T ss_pred ccccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEec------CCCcEEEecCCCe
Confidence 33 5679999999999999999421 1 111 1111211 01122221 1234688999999
Q ss_pred EEEecchhhccccccccCC
Q psy4895 201 LLILQDDMYEKYVHGISSK 219 (430)
Q Consensus 201 lliMsG~aR~~w~H~I~~~ 219 (430)
+++.... ..|++.++
T Consensus 150 ~vlfps~----~lH~v~pV 164 (226)
T PRK05467 150 LVLYPST----SLHRVTPV 164 (226)
T ss_pred EEEECCC----Cceeeeec
Confidence 9999863 45888774
No 21
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.47 E-value=0.0042 Score=56.37 Aligned_cols=149 Identities=16% Similarity=0.122 Sum_probs=84.8
Q ss_pred CceEEeCCCCCHHHHHHHHHHHhcCCCCcccccccceE----EEecCcCCCCCCC-CCCChhHHHHHHHHHHhcCCCC--
Q psy4895 63 PTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKL----QNWGGIPHPKGMI-AEKLPEWLDTYLERINQLGVFE-- 135 (430)
Q Consensus 63 ~Gl~~ipdfls~~ee~~Ll~~l~~~~~~~w~~~~~rr~----~~~G~~~~~~~~~-~~~~P~~l~~l~~rl~~~~~~~-- 135 (430)
|++++++||||++|.+.|++...... |........ ....++.+....+ ...-++....+.+++.....++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~ 77 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLG---WRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRG 77 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhc---ccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCch
Confidence 48999999999999999999887652 321000000 0000111100011 1112455666777777765443
Q ss_pred -CCCCceEEEeeecCCCCCCCCCCCCCC---CCceEEEcCC--C---ceEEEEecCCCCCCCCeeEEEEeCCCeEEEecc
Q psy4895 136 -SVKPNHVLINEYLAGQGIMPHFDGPLY---YPTISTISCG--S---HTILNFYEPDRTSEGSEVCSIFVDARSLLILQD 206 (430)
Q Consensus 136 -~~~pn~~lvN~Y~~G~~I~~H~D~~~~---~~~Ia~lSLg--s---~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG 206 (430)
......+.++.|.+|+...+|.|.... +..++++-+= . .-.+.|-... ......+.-..|+++++..
T Consensus 78 ~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~----~~~~~~v~P~~G~~v~f~~ 153 (178)
T smart00702 78 LPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG----LMVCATVKPKKGDLLFFPS 153 (178)
T ss_pred hhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC----CccceEEeCCCCcEEEEeC
Confidence 456678899999999999999998421 2333333221 0 0112222111 1235577888999999874
Q ss_pred hhhccccccccCC
Q psy4895 207 DMYEKYVHGISSK 219 (430)
Q Consensus 207 ~aR~~w~H~I~~~ 219 (430)
.-. ...|++.++
T Consensus 154 ~~~-~~~H~v~pv 165 (178)
T smart00702 154 GRG-RSLHGVCPV 165 (178)
T ss_pred CCC-CccccCCcc
Confidence 421 345888885
No 22
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=96.85 E-value=0.00075 Score=54.97 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=47.6
Q ss_pred CceEEEeeec---CCCCCCCCCCCCCCCCceEEEcCC-CceEEEEecCCCCCCCCeeEEEEeCCCeEEEecch-------
Q psy4895 139 PNHVLINEYL---AGQGIMPHFDGPLYYPTISTISCG-SHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDD------- 207 (430)
Q Consensus 139 pn~~lvN~Y~---~G~~I~~H~D~~~~~~~Ia~lSLg-s~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~------- 207 (430)
++++.+|+|. .+.++++|.|.. ..+++|-+. ...-+.|.... ..+.+...+++++|+.|+
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~------~~~~v~~~~~~~~v~~G~~l~~~t~ 71 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDG------EWVDVPPPPGGFIVNFGDALEILTN 71 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETT------EEEE----TTCEEEEEBHHHHHHTT
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheeccccc------cccCccCccceeeeeceeeeecccC
Confidence 4788999999 677999999974 235566555 66677776553 455566666666666666
Q ss_pred -hhccccccccCCCCCCCccccccccCCCCCcccccccccccceEE
Q psy4895 208 -MYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVL 252 (430)
Q Consensus 208 -aR~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~l~r~~R~s~t~~l 252 (430)
.+..+.|+|... ..+.|+|+++.+
T Consensus 72 g~~~~~~HrV~~~---------------------~~~~R~s~~~f~ 96 (98)
T PF03171_consen 72 GRYPATLHRVVPP---------------------TEGERYSLTFFL 96 (98)
T ss_dssp TSS----EEEE-----------------------STS-EEEEEEEE
T ss_pred CccCCceeeeEcC---------------------CCCCEEEEEEEE
Confidence 666777777773 256788887653
No 23
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=95.40 E-value=0.079 Score=48.04 Aligned_cols=146 Identities=16% Similarity=0.261 Sum_probs=79.3
Q ss_pred ceEEeCCCCCHHHHHHHHHHHhcCCCCcccccccceEEEecC-cCCCCCCC--CCCChhHHH-HHHHHHHhcCCC-CCCC
Q psy4895 64 TVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGG-IPHPKGMI--AEKLPEWLD-TYLERINQLGVF-ESVK 138 (430)
Q Consensus 64 Gl~~ipdfls~~ee~~Ll~~l~~~~~~~w~~~~~rr~~~~G~-~~~~~~~~--~~~~P~~l~-~l~~rl~~~~~~-~~~~ 138 (430)
-+.-||..||+++...+-+.+... .|.-. |-.+-+-+ ....+... ..++-..+. .+++++.+...| ....
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A---~w~dG--rat~g~q~a~vk~n~qlp~~s~l~~~vg~~il~al~~~plff~aAL 77 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQA---EWVDG--RATQGPQGAQVKNNLQLPQDSALARELGNEILQALTAHPLFFAAAL 77 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhc---ccccc--ccccCcchhhhhccccCCcccHHHHHHHHHHHHHHHhchhHHHhhc
Confidence 466799999999998888888766 36531 22221111 11111111 122222332 345555554332 2222
Q ss_pred Cc---eEEEeeecCCCCCCCCCCCC--CCCC--ceEEEcCCCceEEEEecCCC-CC------CCCeeEEEEeCCCeEEEe
Q psy4895 139 PN---HVLINEYLAGQGIMPHFDGP--LYYP--TISTISCGSHTILNFYEPDR-TS------EGSEVCSIFVDARSLLIL 204 (430)
Q Consensus 139 pn---~~lvN~Y~~G~~I~~H~D~~--~~~~--~Ia~lSLgs~~~m~f~~~~~-~~------~~~~~~~l~L~~gSlliM 204 (430)
|- .=+-|.|+.|++.++|+|+. ...+ .. .|+---.|+..+.-++. ++ +.-....|.||.|||++.
T Consensus 78 p~t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~-~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVly 156 (229)
T COG3128 78 PRTCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGF-RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLY 156 (229)
T ss_pred ccccCCchhhhccCCCcccccccCcccccCCCCCc-eeEeeeeeeeecCCccccCCceEEEeccccceEEeccCCCEEEc
Confidence 22 22568999999999999993 2111 11 23222234444432221 11 334577999999999998
Q ss_pred cchhhccccccccCC
Q psy4895 205 QDDMYEKYVHGISSK 219 (430)
Q Consensus 205 sG~aR~~w~H~I~~~ 219 (430)
-+.+ .|.|.++
T Consensus 157 pStS----lH~VtPV 167 (229)
T COG3128 157 PSTS----LHEVTPV 167 (229)
T ss_pred cccc----ceecccc
Confidence 7765 5777774
No 24
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=94.98 E-value=0.18 Score=50.08 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=63.1
Q ss_pred ccccccccC--CCceEEeCCCCCHHHHHHHHHHHhcCCCCcccc---cccceEEEecCcCCCCCCCCCCChhHHHHHHHH
Q psy4895 53 VEKYVIKKA--PPTVYYIPDFITREEESHLLNKIYSVPKPKWTQ---LSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLER 127 (430)
Q Consensus 53 l~~~~~~~l--p~Gl~~ipdfls~~ee~~Ll~~l~~~~~~~w~~---~~~rr~~~~G~~~~~~~~~~~~~P~~l~~l~~r 127 (430)
....+++.+ -|-+++++||||++|.+.|++.-.... .+.+- .+.... .-..+.+....+...--+.+..|.+|
T Consensus 42 ~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l-~~S~v~~~~~g~~~-~s~~RTS~~~~l~~~~dpvv~~I~~R 119 (310)
T PLN00052 42 FNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKI-QRSMVADNKSGKSV-MSEVRTSSGMFLDKRQDPVVSRIEER 119 (310)
T ss_pred cCCceEEEecCCCCEEEECCcCCHHHHHHHHHhccccc-ccceeecCCCCccc-cCCCEEecceeecCCCCHHHHHHHHH
Confidence 345555544 478999999999999999997764421 01110 000000 00001111111111113467888899
Q ss_pred HHhcCCCCCCCCceEEEeeecCCCCCCCCCCC
Q psy4895 128 INQLGVFESVKPNHVLINEYLAGQGIMPHFDG 159 (430)
Q Consensus 128 l~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~ 159 (430)
|.....++-..-+.+-|-.|.+|+...+|.|-
T Consensus 120 ia~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~ 151 (310)
T PLN00052 120 IAAWTFLPEENAENIQILRYEHGQKYEPHFDY 151 (310)
T ss_pred HHHHhCCCcccCcceEEEecCCCCCCCCCCCc
Confidence 98887665555667788899999999999995
No 25
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=93.48 E-value=0.088 Score=49.74 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=43.1
Q ss_pred CCCCceEEEeeecC--C--------------C-CCCCCCCCC-CCCCceEEEcCCCce------EEEEecCCCCCCCCee
Q psy4895 136 SVKPNHVLINEYLA--G--------------Q-GIMPHFDGP-LYYPTISTISCGSHT------ILNFYEPDRTSEGSEV 191 (430)
Q Consensus 136 ~~~pn~~lvN~Y~~--G--------------~-~I~~H~D~~-~~~~~Ia~lSLgs~~------~m~f~~~~~~~~~~~~ 191 (430)
...+|-.+||++.| . . .++||.|.. .-..+||-=|--++. -.-|+.-+ ...+.
T Consensus 135 ~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~StVAVY~~s~~~~~~~~W~VgLka~D---~~tP~ 211 (253)
T PF12933_consen 135 SCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVERSTVAVYSYSCEEPEPADWHVGLKAWD---IETPG 211 (253)
T ss_dssp -----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT--EEEEEEE-----TTSEEEEEETT-----SS-E
T ss_pred ceeeehhhhhccCcccccccccccccccCCcceeeeeccccccccccceEEEEecCCCCCCCceEEEEeecC---CCCCe
Confidence 34799999999998 1 1 368999983 223456655544421 22333222 23689
Q ss_pred EEEEeCCCeEEEecchhhccccccccCC
Q psy4895 192 CSIFVDARSLLILQDDMYEKYVHGISSK 219 (430)
Q Consensus 192 ~~l~L~~gSlliMsG~aR~~w~H~I~~~ 219 (430)
+.+.|++||.|.|-++..-..+|+|...
T Consensus 212 L~vPL~sgd~Y~Mldd~N~tHqH~VlaG 239 (253)
T PF12933_consen 212 LAVPLRSGDCYYMLDDFNATHQHCVLAG 239 (253)
T ss_dssp EEEEE-TT-EEEE-TTHHHHEEEEEE--
T ss_pred eEEeccCCCeEEEccccchhhHHHHhcC
Confidence 9999999999999999999999999884
No 26
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=93.30 E-value=0.075 Score=43.14 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=43.7
Q ss_pred EEEeeecCCCCCCCCCCCCCCCCceEEE--cCCC------ceEEEEecCCCCCCCCeeEEEE-----eCCCeEEEecchh
Q psy4895 142 VLINEYLAGQGIMPHFDGPLYYPTISTI--SCGS------HTILNFYEPDRTSEGSEVCSIF-----VDARSLLILQDDM 208 (430)
Q Consensus 142 ~lvN~Y~~G~~I~~H~D~~~~~~~Ia~l--SLgs------~~~m~f~~~~~~~~~~~~~~l~-----L~~gSlliMsG~a 208 (430)
|-+|.|.+|+.+.||.|.......++++ -|.. .-.+.|..... .......+. ..+|+++++.+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~--~~~~~~~~~~~~~~p~~g~~v~F~~-- 76 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKD--SDDVSREVEDFDIVPKPGRLVIFPS-- 76 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS---TSSTCEEEGGGSEE-BTTEEEEEES--
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEecccc--CCCcceEEEeccccCCCCEEEEEeC--
Confidence 3588999999999999993222333333 2442 23455554310 012333443 88999999999
Q ss_pred hccccccccCC
Q psy4895 209 YEKYVHGISSK 219 (430)
Q Consensus 209 R~~w~H~I~~~ 219 (430)
....|++.+.
T Consensus 77 -~~~~H~v~~v 86 (100)
T PF13640_consen 77 -DNSLHGVTPV 86 (100)
T ss_dssp -CTCEEEEEEE
T ss_pred -CCCeecCccc
Confidence 4456999995
No 27
>KOG3200|consensus
Probab=91.78 E-value=0.4 Score=43.06 Aligned_cols=34 Identities=47% Similarity=0.868 Sum_probs=28.7
Q ss_pred ccccccccCCCceEEeCCCCCHHHHHHHHHHHhcC
Q psy4895 53 VEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSV 87 (430)
Q Consensus 53 l~~~~~~~lp~Gl~~ipdfls~~ee~~Ll~~l~~~ 87 (430)
++.+++...| -..||||||+++||..+++.|.+.
T Consensus 3 ~~~F~V~~~p-t~~YIPnfIt~EEe~~~lshIe~a 36 (224)
T KOG3200|consen 3 IKKFIVKSAP-TMIYIPNFITEEEENLYLSHIENA 36 (224)
T ss_pred cceeEecccc-eEEEcCCccChHHHHHHHHHHhcC
Confidence 4567777776 889999999999999999998653
No 28
>KOG2424|consensus
Probab=91.55 E-value=0.86 Score=41.21 Aligned_cols=109 Identities=24% Similarity=0.287 Sum_probs=60.1
Q ss_pred ccccceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCC-ceEEeecccCCCC-CCCCCCHH
Q psy4895 245 RAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQAD-RWTVDSAGTGDWH-VGHPADSR 322 (430)
Q Consensus 245 R~s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~-~~~v~SAGt~p~~-~g~~~~~~ 322 (430)
++|..++..||..|--||==|-.++++. ++.+.|-|||+ ++..|+++. +-.|+.=||. |. .-......
T Consensus 2 ~~~~l~~avvC~sN~NRSMeaH~~L~~~--------G~~v~S~GTg~-~vklPG~~~dkPNvY~Fgt~-Y~~iy~dL~~k 71 (195)
T KOG2424|consen 2 LSSNLRVAVVCASNQNRSMEAHNILKKK--------GLNVRSFGTGS-HVKLPGPSPDKPNVYDFGTT-YKQIYNDLLRK 71 (195)
T ss_pred CCccceeeeeehhcccchHHHHHHHHHc--------CCcceeecCCC-ceeCCCCCCCCCCccccCCc-HHHHHHHHHhh
Confidence 4577899999999999998887776654 26788999975 334443332 3334444422 10 00000011
Q ss_pred HHHHHHhCCCCC--C------CcccccchhhhccCCEEEEeCcccHHHHH
Q psy4895 323 ARDVLAKHNVPC--Q------HQARQVIEEDFGKFDYLFVMDESNFANVK 364 (430)
Q Consensus 323 a~~~L~e~Gid~--~------~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~ 364 (430)
-.+.-+..||=. + .+|.++- +--+.||+|+|.+++....+.
T Consensus 72 d~~~Y~~nGiL~mldRNrriK~~Per~q-~~t~~FDvV~TcEErvyD~Vv 120 (195)
T KOG2424|consen 72 DRELYTRNGILHMLDRNRRIKPAPERFQ-ECTEVFDVVFTCEERVFDSVV 120 (195)
T ss_pred hHHHHhhcccchhhhcccccccCCcchh-hccccceEEEEehhHHHHHHH
Confidence 111223445421 1 1122221 122569999999998887654
No 29
>KOG1591|consensus
Probab=89.78 E-value=1.8 Score=42.60 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred ccccccc--CCCceEEeCCCCCHHHHHHHHHHHhcCCCCcccccccceEEEecC--cCC------CCCC-CCCCChhHHH
Q psy4895 54 EKYVIKK--APPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGG--IPH------PKGM-IAEKLPEWLD 122 (430)
Q Consensus 54 ~~~~~~~--lp~Gl~~ipdfls~~ee~~Ll~~l~~~~~~~w~~~~~rr~~~~G~--~~~------~~~~-~~~~~P~~l~ 122 (430)
.+.+++. +-|.+.+++|||+.+|.+.|+..-.... ...++..-+. ... .++. +...=.+.+.
T Consensus 86 ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l-------~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~ 158 (289)
T KOG1591|consen 86 APVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKL-------ERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVS 158 (289)
T ss_pred cchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhh-------hceeeeccCCcccccceeeEecceeEecCCCCHHHH
Confidence 3444443 3378999999999999999976644321 1111211110 000 0111 1122355677
Q ss_pred HHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCCCC-----------CCCceEEEcCCCceEEEEecCCCCC---CC
Q psy4895 123 TYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPL-----------YYPTISTISCGSHTILNFYEPDRTS---EG 188 (430)
Q Consensus 123 ~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~~~-----------~~~~Ia~lSLgs~~~m~f~~~~~~~---~~ 188 (430)
.|-+||.....++-..-...-|.-|..|+.-.+|.|--. .|..||++ +|.+.....-+ -+
T Consensus 159 ~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~------l~yls~v~~GG~TvFP 232 (289)
T KOG1591|consen 159 RIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATV------LMYLSDVEQGGETVFP 232 (289)
T ss_pred HHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeE------EEEecccCCCCcccCC
Confidence 888889888888777788888889999999999988621 23455544 45554433211 11
Q ss_pred Cee--EEEEeCCCeEEEe
Q psy4895 189 SEV--CSIFVDARSLLIL 204 (430)
Q Consensus 189 ~~~--~~l~L~~gSlliM 204 (430)
... ..|....||.+..
T Consensus 233 ~~~~~~~V~PkkGdal~w 250 (289)
T KOG1591|consen 233 NLGMKPAVKPKKGDALFW 250 (289)
T ss_pred CCCCcccccCCCCCeeEE
Confidence 222 3777778888775
No 30
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=89.48 E-value=0.18 Score=46.20 Aligned_cols=99 Identities=27% Similarity=0.342 Sum_probs=53.0
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCC-CceEEeecccCCCCCCCCCCHHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQA-DRWTVDSAGTGDWHVGHPADSRARDVL 327 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~-~~~~v~SAGt~p~~~g~~~~~~a~~~L 327 (430)
.++-+||..|--||--|-.++++. .|.+.|-|||. .+--|+++ ++-.|+.=||. | ...-+-|
T Consensus 2 l~~avVCasN~NRSMEAH~~L~~~--------G~~V~SfGTGs-~VkLPGps~d~PnvY~FgT~-Y-------~~iy~dL 64 (195)
T PF04722_consen 2 LRFAVVCASNQNRSMEAHNVLKKA--------GFNVRSFGTGS-HVKLPGPSIDKPNVYDFGTP-Y-------DDIYNDL 64 (195)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHT--------T-EEEEEE-SS-SEEEEESSTTCEEEE-TTS--H-------HHHHHHH
T ss_pred ceEEEEccCCCCcCHHHHHHHHHC--------CCceEeecCCC-cccCCCCCCCCCcccCCCCc-H-------HHHHHHH
Confidence 367899999999999998877652 37899999974 22223333 34556555532 2 2222222
Q ss_pred --------HhCCCC--------CCCcccccchh-hhccCCEEEEeCcccHHHHH
Q psy4895 328 --------AKHNVP--------CQHQARQVIEE-DFGKFDYLFVMDESNFANVK 364 (430)
Q Consensus 328 --------~e~Gid--------~~~~~~~l~~~-d~~~~D~Vi~m~~~~~~~l~ 364 (430)
.+.||= +...|.++-+. +...||+|||.++.-...+.
T Consensus 65 ~~kd~~lY~~NGlL~ML~RN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vv 118 (195)
T PF04722_consen 65 LRKDKELYTQNGLLHMLDRNRRIKPAPERFQDCKEKGKFDVIITCEERVFDQVV 118 (195)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHCH-SS--BGGG-------SEEEESSHHHHHHHH
T ss_pred HHhCHHHHHHcCcHHHHhcCccccCCccchhcCCCCcceeEEEEechHHHHHHH
Confidence 344541 11234444322 22459999999988877654
No 31
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=87.23 E-value=0.49 Score=43.19 Aligned_cols=23 Identities=43% Similarity=0.937 Sum_probs=19.8
Q ss_pred ceeeccCCcChHHHHHHHHHHhh
Q psy4895 19 TVYYIPDFITREEESHLLNKIYS 41 (430)
Q Consensus 19 ~~~yip~fi~~~ee~~ll~~i~~ 41 (430)
.+||+|||||++|+..|++.+..
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~ 23 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRE 23 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHh
Confidence 37999999999999999999993
No 32
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=81.31 E-value=7.5 Score=34.86 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCC--CCCCC--ceEEEcC------CCceEEEEecCCCC
Q psy4895 116 KLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDG--PLYYP--TISTISC------GSHTILNFYEPDRT 185 (430)
Q Consensus 116 ~~P~~l~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~--~~~~~--~Ia~lSL------gs~~~m~f~~~~~~ 185 (430)
.+|+.+.+.+++-.+.+ ..+| ..++..|.+|++...|.|. +.+-| .++.||= |.+=+|+=-+..
T Consensus 42 ~yP~~~~~fl~~ch~aG---Q~rp-tplllrY~~gdyn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR-- 115 (173)
T PF09859_consen 42 RYPATLAEFLARCHAAG---QTRP-TPLLLRYGPGDYNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPR-- 115 (173)
T ss_pred CCCccHHHHHHHHHhcc---CCCC-chhhheeCCCCccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCC--
Confidence 46777777777766554 3344 4567799999999999998 33323 3444442 223233322222
Q ss_pred CCCCeeEEEEeCCCeEEEecch----------hhccccccccC
Q psy4895 186 SEGSEVCSIFVDARSLLILQDD----------MYEKYVHGISS 218 (430)
Q Consensus 186 ~~~~~~~~l~L~~gSlliMsG~----------aR~~w~H~I~~ 218 (430)
..+...-+.|+.|+.+|++-. .|-.-.|||..
T Consensus 116 -~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~ 157 (173)
T PF09859_consen 116 -MQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSR 157 (173)
T ss_pred -ccCccccCCcCCCCEEEEecCCCCcCCCccceeccccccccc
Confidence 235667889999999999743 34445566655
No 33
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=78.62 E-value=5.1 Score=32.58 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=47.6
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhC
Q psy4895 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKH 330 (430)
Q Consensus 251 ~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~ 330 (430)
.++.|....+.|.||...+++.++++|.. +.|.-.|.. |
T Consensus 3 ~i~ac~~G~a~s~laa~~L~~aa~~~g~~-----------------------~~ve~~~~~----g-------------- 41 (96)
T cd05569 3 AVTACPTGIAHTYMAAEALEKAAKKLGWE-----------------------IKVETQGSL----G-------------- 41 (96)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCe-----------------------EEEEEecCc----C--------------
Confidence 46889999999999999999999877652 333333322 1
Q ss_pred CCCCCCcccccchhhhccCCEEEEeCcccHHH
Q psy4895 331 NVPCQHQARQVIEEDFGKFDYLFVMDESNFAN 362 (430)
Q Consensus 331 Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~ 362 (430)
....++.++...+|+||...+...+.
T Consensus 42 ------~~~~l~~~~i~~Ad~vi~~~~~~~~~ 67 (96)
T cd05569 42 ------IENELTAEDIAEADAVILAADVPVDD 67 (96)
T ss_pred ------ccCcCCHHHHhhCCEEEEecCCCCch
Confidence 23457888999999999998765443
No 34
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=68.43 E-value=11 Score=30.03 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=46.3
Q ss_pred EEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhCC
Q psy4895 252 LFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHN 331 (430)
Q Consensus 252 lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~G 331 (430)
..-|......+-||+..+++.++++|.. +.|.--|...
T Consensus 3 vtacp~G~Aht~lAae~L~~aA~~~G~~-----------------------i~VE~qg~~g------------------- 40 (85)
T TIGR00829 3 VTACPTGIAHTFMAAEALEKAAKKRGWE-----------------------VKVETQGSVG------------------- 40 (85)
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHCCCe-----------------------EEEEecCCcC-------------------
Confidence 3568888899999999999888876642 4444434321
Q ss_pred CCCCCcccccchhhhccCCEEEEeCcccHHH
Q psy4895 332 VPCQHQARQVIEEDFGKFDYLFVMDESNFAN 362 (430)
Q Consensus 332 id~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~ 362 (430)
....++.+++..+|+||...+...+.
T Consensus 41 -----~~~~lt~~~i~~Ad~viia~d~~~~~ 66 (85)
T TIGR00829 41 -----AQNALTAEDIAAADGVILAADREIDL 66 (85)
T ss_pred -----ccCCCCHHHHHhCCEEEEeccCCCch
Confidence 24568899999999999998765443
No 35
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=68.22 E-value=55 Score=32.14 Aligned_cols=24 Identities=13% Similarity=-0.050 Sum_probs=21.6
Q ss_pred CceEEeCCCCCHHHHHHHHHHHhc
Q psy4895 63 PTVYYIPDFITREEESHLLNKIYS 86 (430)
Q Consensus 63 ~Gl~~ipdfls~~ee~~Ll~~l~~ 86 (430)
+|+.+++++|+++|-+.|.+.+..
T Consensus 14 ~Gyv~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 14 NGFIGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred CCEEeCcCCCCHHHHHHHHHHHHH
Confidence 599999999999999999888754
No 36
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=68.22 E-value=9.9 Score=30.88 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=18.2
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLIN 274 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~ 274 (430)
.+||++|-...+-|.|.+-=.+++++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~ 27 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLK 27 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHH
Confidence 47888888888888887654444443
No 37
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=61.77 E-value=20 Score=36.22 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCC-CCCCCceEEEcCCCceEEEEecCCCC------------CCC
Q psy4895 122 DTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDG-PLYYPTISTISCGSHTILNFYEPDRT------------SEG 188 (430)
Q Consensus 122 ~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~-~~~~~~Ia~lSLgs~~~m~f~~~~~~------------~~~ 188 (430)
..+..-++....++.++-+.++|-+-.+|++.++|.|. .+| .|=.-..+.-+.+..... ...
T Consensus 101 p~v~~l~~~FrflP~wr~ddiMIS~a~~GGgvg~H~D~YDVf-----liQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f 175 (383)
T COG2850 101 PEVAALMEPFRFLPDWRIDDIMISFAAPGGGVGPHFDQYDVF-----LIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPF 175 (383)
T ss_pred HHHHHHHHHhccCccccccceEEEEecCCCccCccccchhee-----EEeecccceeecCCcccccCcCCCcchhhcCCC
Confidence 33444455566678999999999966779999999998 432 222222222222222110 034
Q ss_pred CeeEEEEeCCCeEEEecchhhccccccccC
Q psy4895 189 SEVCSIFVDARSLLILQDDMYEKYVHGISS 218 (430)
Q Consensus 189 ~~~~~l~L~~gSlliMsG~aR~~w~H~I~~ 218 (430)
.+..+..|++|++|.+ +.++ |-|||..
T Consensus 176 ~~~~d~vlepGDiLYi--Pp~~-~H~gvae 202 (383)
T COG2850 176 EPDIDEVLEPGDILYI--PPGF-PHYGVAE 202 (383)
T ss_pred CchhhhhcCCCceeec--CCCC-CcCCccc
Confidence 5677889999996655 4444 5577776
No 38
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=57.62 E-value=17 Score=30.97 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred EEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhCC
Q psy4895 252 LFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHN 331 (430)
Q Consensus 252 lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~G 331 (430)
...|....+-.-||+.-+.+.+.+.|. .|.|..-|+..
T Consensus 7 VTACPtGIAHTyMAAeaLe~~A~~~g~-----------------------~IKVETqGs~G------------------- 44 (122)
T COG1445 7 VTACPTGIAHTYMAAEALEKAAKKLGV-----------------------EIKVETQGAVG------------------- 44 (122)
T ss_pred EecCCchHHHHHHHHHHHHHHHHHcCC-----------------------eEEEEcCCccc-------------------
Confidence 346888888889998878777765442 47888777653
Q ss_pred CCCCCcccccchhhhccCCEEEEeCcccHHH
Q psy4895 332 VPCQHQARQVIEEDFGKFDYLFVMDESNFAN 362 (430)
Q Consensus 332 id~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~ 362 (430)
.-.+||.+|+.++|+||..+|-..+.
T Consensus 45 -----~eN~LT~edI~~Ad~VI~AaD~~i~~ 70 (122)
T COG1445 45 -----IENRLTAEDIAAADVVILAADIEVDL 70 (122)
T ss_pred -----ccCcCCHHHHHhCCEEEEEecccccH
Confidence 34579999999999999998776553
No 39
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=55.86 E-value=18 Score=35.99 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=38.4
Q ss_pred ceEEEeeecC-CC--CCCCCCCCCCCCCceEEEcCCCceEEEEecCCCCC-------------CCCeeEEEEeCCCeEEE
Q psy4895 140 NHVLINEYLA-GQ--GIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTS-------------EGSEVCSIFVDARSLLI 203 (430)
Q Consensus 140 n~~lvN~Y~~-G~--~I~~H~D~~~~~~~Ia~lSLgs~~~m~f~~~~~~~-------------~~~~~~~l~L~~gSlli 203 (430)
..|.+|.|.. ++ ++++|.|.. .+..|=+......++....... ...+..++.|++|++|.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~----dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LY 187 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH----DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLY 187 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS----EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEE
T ss_pred cccceEEEecCCCCCCccCEECCc----ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEE
Confidence 5688999944 44 999999984 2666777777778877621110 12567799999999987
Q ss_pred ec
Q psy4895 204 LQ 205 (430)
Q Consensus 204 Ms 205 (430)
+=
T Consensus 188 lP 189 (319)
T PF08007_consen 188 LP 189 (319)
T ss_dssp E-
T ss_pred EC
Confidence 73
No 40
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=54.62 E-value=27 Score=29.40 Aligned_cols=62 Identities=15% Similarity=0.308 Sum_probs=45.6
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhC
Q psy4895 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKH 330 (430)
Q Consensus 251 ~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~ 330 (430)
...-|-...+.+-||...+++.++++|. .+.|.--|...
T Consensus 7 aVtacp~GiAht~lAAeaL~kAA~~~G~-----------------------~i~VE~qg~~g------------------ 45 (114)
T PRK10427 7 AVTACVSGVAHTYMAAERLEKLCQLEKW-----------------------GVKIETQGALG------------------ 45 (114)
T ss_pred EEeeCCCcHHHHHHHHHHHHHHHHHCCC-----------------------eEEEEecCCcC------------------
Confidence 3467888888999998888888876654 24454444432
Q ss_pred CCCCCCcccccchhhhccCCEEEEeCccc
Q psy4895 331 NVPCQHQARQVIEEDFGKFDYLFVMDESN 359 (430)
Q Consensus 331 Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~ 359 (430)
...++++++...+|+||...+..
T Consensus 46 ------~~~~lt~~~i~~Ad~VIia~d~~ 68 (114)
T PRK10427 46 ------TENRLTDEDIRRADVVLLITDIE 68 (114)
T ss_pred ------cCCCCCHHHHHhCCEEEEEecCC
Confidence 24568999999999999998765
No 41
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=54.51 E-value=16 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=22.8
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhcc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARN 277 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~ 277 (430)
+++++|-.+.+-|.|.++=+++++++.+
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~ 28 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELG 28 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 4799999999999999988888776443
No 42
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=52.89 E-value=16 Score=29.59 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=35.8
Q ss_pred CHHHHHHHHhCCCCCCCcccccchhhhccCCEEEEeCcccHH
Q psy4895 320 DSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFA 361 (430)
Q Consensus 320 ~~~a~~~L~e~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~ 361 (430)
||.|++-+++.|+++++.-..++..++..=|.||..=.-|+.
T Consensus 6 H~GAieW~~~qg~~iD~~v~Hld~~~i~~GD~ViGtLPvhLa 47 (93)
T PF09652_consen 6 HPGAIEWAKQQGIQIDHFVDHLDPADIQPGDVVIGTLPVHLA 47 (93)
T ss_pred cccHHHHHHHhCCCcceeeccCCHHHccCCCEEEEeCcHHHH
Confidence 678999999999999987779999999999999977655543
No 43
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=50.29 E-value=98 Score=27.66 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=28.4
Q ss_pred ccccceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCC
Q psy4895 245 RAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGD 291 (430)
Q Consensus 245 R~s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~ 291 (430)
|.+..++-.+|..|--||-=+.-++.+ + .+.+.|=|||+
T Consensus 3 ~~~nlk~~v~CAsNqNRSMetH~vL~~----a----Gy~V~SfGTgs 41 (197)
T COG5211 3 PMPNLKLAVTCASNQNRSMETHDVLAK----A----GYPVKSFGTGS 41 (197)
T ss_pred CCCCceEEeeeccCCCcchHHHHHHHH----c----CCcccccCCCc
Confidence 445677889999999999766654433 2 36688888875
No 44
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=49.70 E-value=1.1e+02 Score=27.70 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCCCceEEEeeecCCCCCCCCCCCCCC--C-CceEEEcCC--CceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhc
Q psy4895 136 SVKPNHVLINEYLAGQGIMPHFDGPLY--Y-PTISTISCG--SHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYE 210 (430)
Q Consensus 136 ~~~pn~~lvN~Y~~G~~I~~H~D~~~~--~-~~Ia~lSLg--s~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~ 210 (430)
+..|..+.++. .-.-..|.|...+ + +.++.+--| ....+.+-..+. .-.-+.+.+.+||++++.|..
T Consensus 73 ~~pFs~~sv~~---nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~---~~~g~~~~~~~GtVl~~~~~~-- 144 (171)
T PF12851_consen 73 GRPFSGVSVIS---NRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDP---NILGVAFAYQPGTVLIFCAKR-- 144 (171)
T ss_pred CcceeceEEEe---ecCccceecCCCCCCCeEEEEecCCccccCceEecccccc---ccCCEEEecCCCcEEEEcccc--
Confidence 45666666552 2257899999332 2 223333222 234444433111 125678999999999998764
Q ss_pred cccccccCCC
Q psy4895 211 KYVHGISSKT 220 (430)
Q Consensus 211 ~w~H~I~~~~ 220 (430)
+.|++.+..
T Consensus 145 -~~Hgvtpv~ 153 (171)
T PF12851_consen 145 -ELHGVTPVE 153 (171)
T ss_pred -eeeecCccc
Confidence 569999964
No 45
>KOG2731|consensus
Probab=48.28 E-value=10 Score=38.15 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=40.7
Q ss_pred CCCceEEEeeecCCCCCCCCCCCC------CCCCceEEEcCCCceEEEEecCCC
Q psy4895 137 VKPNHVLINEYLAGQGIMPHFDGP------LYYPTISTISCGSHTILNFYEPDR 184 (430)
Q Consensus 137 ~~pn~~lvN~Y~~G~~I~~H~D~~------~~~~~Ia~lSLgs~~~m~f~~~~~ 184 (430)
..|+-|++|+|.+...++-|+|.. .-+=+|..+|.|. +.|.++..+.
T Consensus 312 plp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~d 364 (378)
T KOG2731|consen 312 PLPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQRD 364 (378)
T ss_pred CCcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchhh
Confidence 479999999999999999999982 4456899999999 9999988764
No 46
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=45.94 E-value=16 Score=30.32 Aligned_cols=29 Identities=21% Similarity=0.372 Sum_probs=24.4
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
.+||++|.+...-|-||+.+ ++.+.++|+
T Consensus 2 kkILlvCg~G~STSlla~k~-k~~~~e~gi 30 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKT-TEYLKEQGK 30 (104)
T ss_pred cEEEEECCCchHHHHHHHHH-HHHHHHCCC
Confidence 57999999999999888777 888887765
No 47
>PF12441 DUF3680: Protein of unknown function (DUF3680) ; InterPro: IPR022148 This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length.
Probab=44.17 E-value=28 Score=23.91 Aligned_cols=16 Identities=38% Similarity=0.744 Sum_probs=14.9
Q ss_pred ccCCcChHHHHHHHHH
Q psy4895 23 IPDFITREEESHLLNK 38 (430)
Q Consensus 23 ip~fi~~~ee~~ll~~ 38 (430)
||.|-|++||...+..
T Consensus 5 iP~f~se~Ee~eFW~~ 20 (42)
T PF12441_consen 5 IPEFKSEEEEREFWDT 20 (42)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 8999999999999887
No 48
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=43.99 E-value=16 Score=36.11 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=49.2
Q ss_pred ccccccccceEEEeecCCCCCC-hhHHHHHHHHHHhcccccccee-ccCCCCCcccccccCCC
Q psy4895 241 NRSTRAGKKAVLFVCLGNICRS-PMAACVFKYLINARNQADRWTV-DSAGTGDWHVQHVNQAD 301 (430)
Q Consensus 241 ~r~~R~s~t~~lf~c~~N~~RS-~mAea~~~~~~~~~~~~~~~~~-~sag~~~~~~~~~~~~~ 301 (430)
.|+.|++..-|-|+|.+---|| .|+--+.+.+..+.++.+-|++ |.||+. .+++|+++.
T Consensus 158 vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~avyTaG~~--LpspVS~~R 218 (451)
T COG5092 158 VRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWRAVYTAGTE--LPSPVSQGR 218 (451)
T ss_pred EcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHHHhhhccce--ecCccccch
Confidence 6888999999999999999998 6888999999999898888886 888884 455665554
No 49
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=43.13 E-value=22 Score=27.87 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=24.8
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
+|+++|.+..+-|.|++.-+++.+.++|+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi 29 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGI 29 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccC
Confidence 58999999999999997778888876653
No 50
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=39.79 E-value=38 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHh
Q psy4895 251 VLFVCLGNICRSPMAACVFKYLINA 275 (430)
Q Consensus 251 ~lf~c~~N~~RS~mAea~~~~~~~~ 275 (430)
.++||++..|+.-=|++++.++-.+
T Consensus 2 ~I~VC~~~~C~~~G~~~l~~~l~~~ 26 (77)
T cd02980 2 HILVCTGTACGLRGAEELLEALEKE 26 (77)
T ss_pred EEEEccCCCcccCCHHHHHHHHHHH
Confidence 4799999999987788887777654
No 51
>KOG3959|consensus
Probab=39.15 E-value=19 Score=34.11 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.1
Q ss_pred CCC-CceeeccCCcChHHHHHHHHHHhhcc
Q psy4895 15 KAP-PTVYYIPDFITREEESHLLNKIYSHN 43 (430)
Q Consensus 15 ~~p-~~~~yip~fi~~~ee~~ll~~i~~~~ 43 (430)
++| |.+..|-||+|++||..|++-|...|
T Consensus 68 ~~p~pG~~lie~Fls~~Eea~l~~~~D~~p 97 (306)
T KOG3959|consen 68 SIPIPGLTLIENFLSESEEAKLLNMIDTVP 97 (306)
T ss_pred ccccCCeeehhhhhccchHhHHHHHhccCc
Confidence 344 48899999999999999999998877
No 52
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=36.24 E-value=41 Score=27.18 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=34.7
Q ss_pred CHHHHHHHHhCCCCCCCcccccchhhhccCCEEEEeCcccH
Q psy4895 320 DSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNF 360 (430)
Q Consensus 320 ~~~a~~~L~e~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~ 360 (430)
|+.|++-+++.|+++++....|+..++..=|.||..=.-++
T Consensus 6 H~Ga~eW~~~qG~~iD~~v~HLd~~~i~~GD~ViGtLPv~L 46 (93)
T TIGR02620 6 HSGAQEWLSQQGIQIDHFVDHLDPIDISQGDKVIGTLPVSL 46 (93)
T ss_pred cccHHHHHHhcCCccceeecccCHHHhcCCCEEEEeCCHHH
Confidence 56789999999999998777999999999999996655443
No 53
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=35.66 E-value=83 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=19.1
Q ss_pred ccccchhhhccCCEEEEeCcccH
Q psy4895 338 ARQVIEEDFGKFDYLFVMDESNF 360 (430)
Q Consensus 338 ~~~l~~~d~~~~D~Vi~m~~~~~ 360 (430)
-..|+.+++..+|+||...+...
T Consensus 28 ~~~lt~~~i~~Ad~VIia~d~~i 50 (88)
T PRK10474 28 ENELTAEDVASADMVILTKDIGI 50 (88)
T ss_pred CCCCCHHHHHhCCEEEEEecCCC
Confidence 45689999999999999987653
No 54
>PLN02904 oxidoreductase
Probab=35.08 E-value=97 Score=31.43 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=47.5
Q ss_pred eEEEeeecCC------CCCCCCCCCCCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhccccc
Q psy4895 141 HVLINEYLAG------QGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVH 214 (430)
Q Consensus 141 ~~lvN~Y~~G------~~I~~H~D~~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~H 214 (430)
.+-+|.|.+- -++++|.|... |..|- ....=+.....+ +.-+.|.-.+|+++|--|+.=..|+-
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g~----lTlL~-qd~~GLQV~~~~-----g~Wi~V~p~pgalVVNiGD~Le~~TN 278 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFGS----LTILL-QSSQGLQIMDCN-----KNWVCVPYIEGALIVQLGDQVEVMSN 278 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCCc----eEEEe-cCCCeeeEEeCC-----CCEEECCCCCCeEEEEccHHHHHHhC
Confidence 5678999771 28899999732 33331 111223333333 36888888999999999999999977
Q ss_pred cccCCCC
Q psy4895 215 GISSKTD 221 (430)
Q Consensus 215 ~I~~~~~ 221 (430)
|.-+...
T Consensus 279 G~~kSt~ 285 (357)
T PLN02904 279 GIYKSVV 285 (357)
T ss_pred CeeeccC
Confidence 7666443
No 55
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=34.26 E-value=1.3e+02 Score=30.64 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=39.7
Q ss_pred CceEEeecccCCCCCCCCCCHHHHHHHHhCCCCCC----Ccccccchhhh----ccCCEEEEeCcccH
Q psy4895 301 DRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQ----HQARQVIEEDF----GKFDYLFVMDESNF 360 (430)
Q Consensus 301 ~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~Gid~~----~~~~~l~~~d~----~~~D~Vi~m~~~~~ 360 (430)
.++.|-+.|+.- ..--.|.+.|++.||+.+ +.-++++.+.+ .+.+.|||+++...
T Consensus 229 ~dvtIia~G~~v-----~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~ 291 (356)
T PLN02683 229 KDVTIVAFSKMV-----GYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWP 291 (356)
T ss_pred CCEEEEEccHHH-----HHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCc
Confidence 468888888653 234466777889999964 55677777644 56899999998764
No 56
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=33.52 E-value=53 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.9
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
+|+++|..+.+-|.|++.-+++.+++.+.
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~ 30 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGL 30 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 68999999999999999989888876554
No 57
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=32.19 E-value=41 Score=27.12 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.8
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
.+|+++|....+-|.|++.=++.+++++|.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 379999999999999988888888887665
No 58
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=32.07 E-value=39 Score=26.74 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCCC--CcccccchhhhccCCEEEEeCc
Q psy4895 322 RARDVLAKHNVPCQ--HQARQVIEEDFGKFDYLFVMDE 357 (430)
Q Consensus 322 ~a~~~L~e~Gid~~--~~~~~l~~~d~~~~D~Vi~m~~ 357 (430)
.+.++|++.||+.. |..-.-.......+|+|||..+
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~ 43 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTH 43 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECcc
Confidence 46789999999865 3211111334457899999975
No 59
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=30.43 E-value=63 Score=34.30 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=43.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhCC
Q psy4895 252 LFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHN 331 (430)
Q Consensus 252 lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~G 331 (430)
..-|....+.+-||+..+++.++++|. ++.|+.-|...
T Consensus 9 Vtacp~GiAht~mAaeaL~~aA~~~G~-----------------------~i~VEtqg~~g------------------- 46 (482)
T PRK11404 9 ITNCPAGIAHTYMVAEALEQKARSLGH-----------------------TIKVETQGSSG------------------- 46 (482)
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHCCC-----------------------eEEEEecCCcc-------------------
Confidence 456888889999999888888887654 24555444432
Q ss_pred CCCCCcccccchhhhccCCEEEEeCc
Q psy4895 332 VPCQHQARQVIEEDFGKFDYLFVMDE 357 (430)
Q Consensus 332 id~~~~~~~l~~~d~~~~D~Vi~m~~ 357 (430)
...++|+++.+++|.||...|
T Consensus 47 -----~~~~lt~~~i~~Ad~VIia~d 67 (482)
T PRK11404 47 -----VENRLSSEEIAAADYVILATG 67 (482)
T ss_pred -----CCCCCCHHHHHhCCEEEEeec
Confidence 245688899999999998855
No 60
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=30.38 E-value=1.1e+02 Score=28.01 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=16.9
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLIN 274 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~ 274 (430)
++|.+.|.||. .+++++++++..
T Consensus 1 ~riail~sg~g---s~~~~ll~~~~~ 23 (190)
T TIGR00639 1 KRIVVLISGNG---SNLQAIIDACKE 23 (190)
T ss_pred CeEEEEEcCCC---hhHHHHHHHHHc
Confidence 35677777654 589999998864
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=30.29 E-value=69 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.5
Q ss_pred ceEEEeecCCCCCChhHHHHHH
Q psy4895 249 KAVLFVCLGNICRSPMAACVFK 270 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~ 270 (430)
.-|||=|+.+. |+-++-++..
T Consensus 87 ~pvL~HC~sG~-Rt~~l~al~~ 107 (135)
T TIGR01244 87 GPVLAYCRSGT-RSSLLWGFRQ 107 (135)
T ss_pred CCEEEEcCCCh-HHHHHHHHHH
Confidence 56999999999 9877766543
No 62
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=29.22 E-value=93 Score=33.87 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=27.7
Q ss_pred cccceEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 246 ~s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
.+..+|+++|-...+-|.|++.-.++..+++|.
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI 536 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGI 536 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCC
Confidence 445689999999999999999888888876654
No 63
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=28.21 E-value=1.4e+02 Score=28.71 Aligned_cols=105 Identities=17% Similarity=0.315 Sum_probs=61.0
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCccc--c-------cc-cCCCceEEeecccCCCCCCCC
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHV--Q-------HV-NQADRWTVDSAGTGDWHVGHP 318 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~--~-------~~-~~~~~~~v~SAGt~p~~~g~~ 318 (430)
.+|-|+=.||++-|+|.+-++...+.+- .++++-.|+|.--. + -. .-..++.|. ++| +.+.|
T Consensus 3 vKiGiiKlGNig~s~~idl~lDErAdRe----dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~---isP-N~a~P 74 (277)
T PRK00994 3 VKIGIIKLGNIGMSPVIDLLLDERADRE----DIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIV---ISP-NPAAP 74 (277)
T ss_pred EEEEEEEecccchHHHHHHHHHhhhccc----CceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEE---ECC-CCCCC
Confidence 4788899999999999999999888643 24555555542110 0 00 001122222 122 11223
Q ss_pred CCHHHHHHHHhCCCCC---C-Ccccccchh-hhccCCEEEEeCcccHH
Q psy4895 319 ADSRARDVLAKHNVPC---Q-HQARQVIEE-DFGKFDYLFVMDESNFA 361 (430)
Q Consensus 319 ~~~~a~~~L~e~Gid~---~-~~~~~l~~~-d~~~~D~Vi~m~~~~~~ 361 (430)
=-..|++.|++.||+. + ...++..+. .-..|-|||.-++.-+.
T Consensus 75 GP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpMIG 122 (277)
T PRK00994 75 GPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPMIG 122 (277)
T ss_pred CchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecCcccc
Confidence 3456888899999984 3 223332222 23568999999887654
No 64
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=28.10 E-value=67 Score=32.95 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=30.6
Q ss_pred cccceEEEeecCCCCCChhHHHHHHHHHHhcccc
Q psy4895 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQA 279 (430)
Q Consensus 246 ~s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~ 279 (430)
.+++++.|+|...-.-|-|.+.++|+..+++|+.
T Consensus 376 ~~v~~iifaCDAGMGSSAMGAsilrkk~k~agl~ 409 (472)
T COG2213 376 SNVKKIIFACDAGMGSSAMGASILRKKLKNAGLN 409 (472)
T ss_pred cceeEEEEEEcCCCChhhhhHHHHHHHHHhCCCC
Confidence 4578999999999999999999999999988773
No 65
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=27.64 E-value=1.7e+02 Score=29.36 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=31.4
Q ss_pred cccccccceEEE--eecCCCCCChhHHHHHHHHHHhccccccceeccCCCCC
Q psy4895 242 RSTRAGKKAVLF--VCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGD 291 (430)
Q Consensus 242 r~~R~s~t~~lf--~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~ 291 (430)
+..|....-|-+ +..|+++..|+.++|++.+. ++|. +.-+-|.|.|+
T Consensus 43 ~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~-~~g~--~~~ilsRGYg~ 91 (325)
T PRK00652 43 KPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQ-ARGL--KPGVVSRGYGG 91 (325)
T ss_pred cccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHH-HCCC--eEEEECCCCCC
Confidence 344455554444 55677789999999999875 4443 35567888865
No 66
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=27.63 E-value=1.9e+02 Score=29.04 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=46.8
Q ss_pred ceEEEeeecCC-------C-CCCCCCCCCCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhcc
Q psy4895 140 NHVLINEYLAG-------Q-GIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEK 211 (430)
Q Consensus 140 n~~lvN~Y~~G-------~-~I~~H~D~~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~ 211 (430)
..+-+|.|.+- . ++++|.|... |..|-=-..-=+....++ +.-+.+.-.+|+++|--|+.=..
T Consensus 178 ~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~----lTlL~Qd~v~GLQV~~~~-----g~Wi~Vpp~pga~VVNiGD~l~~ 248 (335)
T PLN02156 178 SCLRMNHYPEKEETPEKVEIGFGEHTDPQL----ISLLRSNDTAGLQICVKD-----GTWVDVPPDHSSFFVLVGDTLQV 248 (335)
T ss_pred ceEeEEeCCCCCCCccccccCCCCccCCCc----eEEEEeCCCCceEEEeCC-----CCEEEccCCCCcEEEEhHHHHHH
Confidence 35678999661 2 7899999632 222210000012222222 46888888999999999999999
Q ss_pred ccccccCCCC
Q psy4895 212 YVHGISSKTD 221 (430)
Q Consensus 212 w~H~I~~~~~ 221 (430)
|+.|.-+...
T Consensus 249 wTNg~~kSt~ 258 (335)
T PLN02156 249 MTNGRFKSVK 258 (335)
T ss_pred HhCCeeeccc
Confidence 9888776543
No 67
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=27.58 E-value=82 Score=34.14 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=48.1
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHh
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAK 329 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e 329 (430)
-...-|....+.+-||+..+++.++++|. ++.|+.-|...
T Consensus 107 vaVtacptGiAht~mAAeaL~~aA~~~G~-----------------------~i~VEtqg~~g----------------- 146 (563)
T PRK10712 107 VAVTACPTGVAHTFMAAEAIETEAKKRGW-----------------------WVKVETRGSVG----------------- 146 (563)
T ss_pred EEEecCCCchhHHHHHHHHHHHHHHHCCC-----------------------eEEEEecCCcc-----------------
Confidence 33467999999999999999998887664 35555545432
Q ss_pred CCCCCCCcccccchhhhccCCEEEEeCcccHH
Q psy4895 330 HNVPCQHQARQVIEEDFGKFDYLFVMDESNFA 361 (430)
Q Consensus 330 ~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~ 361 (430)
...++|+++.+++|.||...+...+
T Consensus 147 -------~~n~lt~~~i~~Ad~VIia~d~~vd 171 (563)
T PRK10712 147 -------AGNAITPEEVAAADLVIVAADIEVD 171 (563)
T ss_pred -------cCCCCCHHHHHhCCEEEEecCCCcc
Confidence 2456889999999999998776543
No 68
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=27.20 E-value=44 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHhCCCCCC-----Ccccccchhhh
Q psy4895 318 PADSRARDVLAKHNVPCQ-----HQARQVIEEDF 346 (430)
Q Consensus 318 ~~~~~a~~~L~e~Gid~~-----~~~~~l~~~d~ 346 (430)
.+.|.|.+.++|+|||++ ...-+++.+|+
T Consensus 4 ~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv 37 (39)
T PF02817_consen 4 KASPAARKLAAELGIDLSQVKGTGPGGRITKEDV 37 (39)
T ss_dssp CCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHH
T ss_pred ccCHHHHHHHHHcCCCcccccccCCCCcEeHHHh
Confidence 468999999999999985 12335666554
No 69
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=27.04 E-value=54 Score=32.86 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=34.7
Q ss_pred eecccCCCCCCC---------CCCHHHHHHHHhCCCCCC--Ccccc-cchhhhccCCEEEEeCcc
Q psy4895 306 DSAGTGDWHVGH---------PADSRARDVLAKHNVPCQ--HQARQ-VIEEDFGKFDYLFVMDES 358 (430)
Q Consensus 306 ~SAGt~p~~~g~---------~~~~~a~~~L~e~Gid~~--~~~~~-l~~~d~~~~D~Vi~m~~~ 358 (430)
.=+|..| |.|+ .+=..|++.+++.|+++. .-+-. +......+||.|++|-..
T Consensus 199 aV~gLNP-HAGE~G~~G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHD 262 (320)
T TIGR00557 199 AVAGLNP-HAGEGGHLGREEIDIIIPALEALRAEGIDLIGPLPADTLFHPAALAKYDAVLAMYHD 262 (320)
T ss_pred EEEecCC-CCCCCCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEEECccc
Confidence 3368888 6665 345568899999999985 22222 223334679999999644
No 70
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=26.76 E-value=53 Score=24.54 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=24.9
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
+++++|..+..-|.|+..-+++.+++.+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~ 29 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGI 29 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999986544
No 71
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.04 E-value=60 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=22.3
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
+||++|.+...-|.||+. +++.+.++|+
T Consensus 1 kIl~~Cg~G~sTS~~~~k-i~~~~~~~~~ 28 (96)
T cd05564 1 KILLVCSAGMSTSILVKK-MKKAAEKRGI 28 (96)
T ss_pred CEEEEcCCCchHHHHHHH-HHHHHHHCCC
Confidence 489999999999999884 5666666655
No 72
>PTZ00273 oxidase reductase; Provisional
Probab=25.91 E-value=1.6e+02 Score=29.14 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=46.3
Q ss_pred ceEEEeeecCC------C-CCCCCCCCCCCCCceEEEcCCCc-eEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhcc
Q psy4895 140 NHVLINEYLAG------Q-GIMPHFDGPLYYPTISTISCGSH-TILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEK 211 (430)
Q Consensus 140 n~~lvN~Y~~G------~-~I~~H~D~~~~~~~Ia~lSLgs~-~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~ 211 (430)
..+-+|.|.+. . ++++|.|... |..| +... .=+.....+ +.-+.|.-.+|+++|.-|++=..
T Consensus 177 ~~lrl~~YP~~~~~~~~~~g~~~HTD~g~----lTlL-~qd~~~GLqV~~~~-----g~Wi~V~p~pg~lvVNvGD~l~~ 246 (320)
T PTZ00273 177 SVFRMKHYPALPQTKKGRTVCGEHTDYGI----ITLL-YQDSVGGLQVRNLS-----GEWMDVPPLEGSFVVNIGDMMEM 246 (320)
T ss_pred ceeeeeecCCCCCccccCcccccccCCCe----EEEE-ecCCCCceEEECCC-----CCEEeCCCCCCeEEEEHHHHHHH
Confidence 35678899762 2 7899999631 2222 1111 113333233 35788888899999999999999
Q ss_pred ccccccCCCC
Q psy4895 212 YVHGISSKTD 221 (430)
Q Consensus 212 w~H~I~~~~~ 221 (430)
|+-|.-+...
T Consensus 247 ~TnG~~kSt~ 256 (320)
T PTZ00273 247 WSNGRYRSTP 256 (320)
T ss_pred HHCCeeeCCC
Confidence 9887766543
No 73
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=25.78 E-value=2e+02 Score=28.78 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=40.1
Q ss_pred CceEEeecccCCCCCCCCCCHHHHHHHHhCCCCCC----Ccccccchhhh----ccCCEEEEeCcccH
Q psy4895 301 DRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQ----HQARQVIEEDF----GKFDYLFVMDESNF 360 (430)
Q Consensus 301 ~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~Gid~~----~~~~~l~~~d~----~~~D~Vi~m~~~~~ 360 (430)
.++.|-+.|..- ..--.|.+.|++.||+.+ +.-++++.+.+ .+...||++++...
T Consensus 202 ~ditiia~G~~v-----~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~ 264 (327)
T CHL00144 202 NDITILTYSRMR-----HHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMK 264 (327)
T ss_pred CCEEEEEccHHH-----HHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCC
Confidence 468888888653 345677778889999974 56778877644 46789999988653
No 74
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.77 E-value=27 Score=33.31 Aligned_cols=103 Identities=17% Similarity=0.309 Sum_probs=48.0
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccc-----------cCCCceEEeecccCCCCCCC
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHV-----------NQADRWTVDSAGTGDWHVGH 317 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~-----------~~~~~~~v~SAGt~p~~~g~ 317 (430)
.+|-|+=.||.+-|+|++-++...+.+- .++++..|+|.-- ++- .-..++.|.. +| +.+.
T Consensus 2 vKiGiiKlGNig~s~~idl~LDErAdRe----dI~vrv~gsGaKm-~pe~~e~~~~~~~~~~~pdf~I~i---sP-N~~~ 72 (276)
T PF01993_consen 2 VKIGIIKLGNIGTSVVIDLLLDERADRE----DIDVRVVGSGAKM-GPEDVEEVVTKMLKEWDPDFVIVI---SP-NAAA 72 (276)
T ss_dssp EEEEEEEES--HHHHHTTGGGSTTS--S----SEEEEEEEEET---SHHHHHHHHHHHHHHH--SEEEEE----S--TTS
T ss_pred eEEEEEEecccchHHHHHHHHHhhhccC----CceEEEeccCCCC-CHHHHHHHHHHHHHhhCCCEEEEE---CC-CCCC
Confidence 3678888999999999998887776532 2444444443210 000 0001222221 23 1111
Q ss_pred CCCHHHHHHHHhCCCCC---C-Ccccccchhh--hccCCEEEEeCcccHH
Q psy4895 318 PADSRARDVLAKHNVPC---Q-HQARQVIEED--FGKFDYLFVMDESNFA 361 (430)
Q Consensus 318 ~~~~~a~~~L~e~Gid~---~-~~~~~l~~~d--~~~~D~Vi~m~~~~~~ 361 (430)
|=-..|++.|++.||+. + ...++. .+. -..|-|||.-++.-+.
T Consensus 73 PGP~~ARE~l~~~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~DpMIG 121 (276)
T PF01993_consen 73 PGPTKAREMLSAKGIPCIVISDAPTKKA-KDALEEEGFGYIIVKADPMIG 121 (276)
T ss_dssp HHHHHHHHHHHHSSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS----
T ss_pred CCcHHHHHHHHhCCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecCcccc
Confidence 11234777888888884 3 222332 232 3568888888876544
No 75
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=25.71 E-value=69 Score=28.72 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=30.7
Q ss_pred cccceEEEeecCCCCCC-hhHHHHHHHHHHhcccccccee
Q psy4895 246 AGKKAVLFVCLGNICRS-PMAACVFKYLINARNQADRWTV 284 (430)
Q Consensus 246 ~s~t~~lf~c~~N~~RS-~mAea~~~~~~~~~~~~~~~~~ 284 (430)
+.+.-|-|+|.+.--|| .||--|.+.+..+-++.+-|+|
T Consensus 108 ~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qA 147 (162)
T PF01233_consen 108 IKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQA 147 (162)
T ss_dssp EEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EE
T ss_pred eeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceee
Confidence 46788999999999998 6999999999988888776654
No 76
>KOG0409|consensus
Probab=25.60 E-value=2.5e+02 Score=28.07 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=49.5
Q ss_pred ccceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHH
Q psy4895 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDV 326 (430)
Q Consensus 247 s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~ 326 (430)
|.++|-|+-.||-. -++.++|.+ . | ..+.|+ -++....+.
T Consensus 34 s~~~iGFIGLG~MG-----~~M~~nLik-~-----------G------------~kVtV~-----------dr~~~k~~~ 73 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMG-----SAMVSNLIK-A-----------G------------YKVTVY-----------DRTKDKCKE 73 (327)
T ss_pred ccceeeEEeeccch-----HHHHHHHHH-c-----------C------------CEEEEE-----------eCcHHHHHH
Confidence 58999999999754 555566664 1 1 134443 378888999
Q ss_pred HHhCCCCCCCcccccchhhhccCCEEEEe--CcccHHHH
Q psy4895 327 LAKHNVPCQHQARQVIEEDFGKFDYLFVM--DESNFANV 363 (430)
Q Consensus 327 L~e~Gid~~~~~~~l~~~d~~~~D~Vi~m--~~~~~~~l 363 (430)
+++.|-.+...|.. -.+..|+|||| +..+.+++
T Consensus 74 f~~~Ga~v~~sPae----Vae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 74 FQEAGARVANSPAE----VAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred HHHhchhhhCCHHH----HHhhcCEEEEEcCChHhhHHH
Confidence 99999887554443 34679999999 44444444
No 77
>KOG2915|consensus
Probab=25.37 E-value=6.4e+02 Score=24.93 Aligned_cols=174 Identities=17% Similarity=0.231 Sum_probs=100.4
Q ss_pred CCCCCCCC--CCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhccccccccCCCCCCCccccc
Q psy4895 152 GIMPHFDG--PLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDIL 229 (430)
Q Consensus 152 ~I~~H~D~--~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~H~I~~~~~d~~~~~~~ 229 (430)
|--+|.|- ..+|..|++ |-|. -+|.+.+.. +-..+.||+|.-++.+.++-+-- .-...
T Consensus 44 Ga~~h~~iIGK~~G~~v~s-skG~-~vylL~PTp------ELWTl~LphRTQI~Yt~Dia~I~--~~L~i---------- 103 (314)
T KOG2915|consen 44 GALPHSDIIGKPYGSKVAS-SKGK-FVYLLQPTP------ELWTLALPHRTQILYTPDIAMIL--SMLEI---------- 103 (314)
T ss_pred cccchhheecCCccceeee-cCCc-EEEEecCCh------HHhhhhccCcceEEecccHHHHH--HHhcC----------
Confidence 56678887 578887777 8887 444444442 56688899999888887776621 11110
Q ss_pred cccCCCCCcccccccccccceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecc
Q psy4895 230 NCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAG 309 (430)
Q Consensus 230 ~~~~~~~~~~l~r~~R~s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAG 309 (430)
..+ -.||-..++---|.-||+|..+..-.+ + .+++
T Consensus 104 -----------~PG--------svV~EsGTGSGSlShaiaraV~ptGhl------~----------------tfef---- 138 (314)
T KOG2915|consen 104 -----------RPG--------SVVLESGTGSGSLSHAIARAVAPTGHL------Y----------------TFEF---- 138 (314)
T ss_pred -----------CCC--------CEEEecCCCcchHHHHHHHhhCcCcce------E----------------EEEe----
Confidence 111 137888888889999999988752111 0 1121
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCC--Ccccccchhhh----ccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEE
Q psy4895 310 TGDWHVGHPADSRARDVLAKHNVPCQ--HQARQVIEEDF----GKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILY 383 (430)
Q Consensus 310 t~p~~~g~~~~~~a~~~L~e~Gid~~--~~~~~l~~~d~----~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~ 383 (430)
-+.--..|++.-+++||+-. -.-|-+...-| ..||-|+.==.+-...++.. .++.
T Consensus 139 ------H~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha------------~~~l- 199 (314)
T KOG2915|consen 139 ------HETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHA------------AKIL- 199 (314)
T ss_pred ------cHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEEcCCChhhhhhhh------------HHHh-
Confidence 12344566777788998743 23444443322 34676553222222222211 1211
Q ss_pred ecccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy4895 384 LGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423 (430)
Q Consensus 384 ~~~~~p~~~~di~DP~~~~~~~~f~~~~~~I~~~i~~ll~ 423 (430)
.. -++ ..=.|..|.+|+++.|+.|..
T Consensus 200 -k~------------~g~-r~csFSPCIEQvqrtce~l~~ 225 (314)
T KOG2915|consen 200 -KD------------EGG-RLCSFSPCIEQVQRTCEALRS 225 (314)
T ss_pred -hh------------cCc-eEEeccHHHHHHHHHHHHHHh
Confidence 00 011 123588899999999998865
No 78
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=25.26 E-value=2.2e+02 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.6
Q ss_pred CceEEeCCCCCHHHHHHHHHHHhcC
Q psy4895 63 PTVYYIPDFITREEESHLLNKIYSV 87 (430)
Q Consensus 63 ~Gl~~ipdfls~~ee~~Ll~~l~~~ 87 (430)
.|+.++++||++++-+.|.+.+...
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~ 52 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERM 52 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHH
Confidence 5999999999999999999888664
No 79
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=25.12 E-value=1.4e+02 Score=32.97 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=47.4
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHh
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAK 329 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e 329 (430)
....-|....+.+-||+.-+++.++++|. ++.|+.-|...
T Consensus 167 ~avtacp~G~aht~mAae~L~~aA~~~g~-----------------------~i~vE~~g~~g----------------- 206 (631)
T PRK09765 167 VCVTACPAGIAHTYMAAEYLEKAGRKLGV-----------------------NVYVEKQGANG----------------- 206 (631)
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHHHCCC-----------------------eEEEEecCCcC-----------------
Confidence 44567999999999999999988887654 34555444432
Q ss_pred CCCCCCCcccccchhhhccCCEEEEeCcccH
Q psy4895 330 HNVPCQHQARQVIEEDFGKFDYLFVMDESNF 360 (430)
Q Consensus 330 ~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~ 360 (430)
...++++++.+++|+||...+...
T Consensus 207 -------~~~~lt~~~i~~Ad~Viia~d~~~ 230 (631)
T PRK09765 207 -------IEGRLTADQLNSATACIFAAEVAI 230 (631)
T ss_pred -------CCCCCCHHHHHhCCEEEEeecCcc
Confidence 245688999999999999877653
No 80
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=25.08 E-value=2.2e+02 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=37.7
Q ss_pred ceEEeecccCCCCCCCCCCHHHHHHHHhCCCCCC----Ccccccchhh----hccCCEEEEeCccc
Q psy4895 302 RWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQ----HQARQVIEED----FGKFDYLFVMDESN 359 (430)
Q Consensus 302 ~~~v~SAGt~p~~~g~~~~~~a~~~L~e~Gid~~----~~~~~l~~~d----~~~~D~Vi~m~~~~ 359 (430)
++.+-+-|+.- ..--.|.+.|++.||+.. +.-+++..+. +++.+.||+++++.
T Consensus 203 di~iva~G~~~-----~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~ 263 (327)
T PRK09212 203 DVTIVTFSIQV-----KLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGW 263 (327)
T ss_pred CEEEEEccHHH-----HHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCC
Confidence 57777777653 344567778888999975 3455666553 35789999999887
No 81
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=25.05 E-value=65 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=28.0
Q ss_pred ccccccccCC--CCceeeccCCcChHHHHHHHHHHhh
Q psy4895 7 NVEKYVIKKA--PPTVYYIPDFITREEESHLLNKIYS 41 (430)
Q Consensus 7 ~~~~~~~~~~--p~~~~yip~fi~~~ee~~ll~~i~~ 41 (430)
.++.++|+.| -|-+++|.||+|++|=.+|++....
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~ 77 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKK 77 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhccc
Confidence 3566777744 5789999999999999999988654
No 82
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.19 E-value=59 Score=26.13 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHhCCCCCC-C------cccc-cchhhhccCCEEEEeCccc
Q psy4895 318 PADSRARDVLAKHNVPCQ-H------QARQ-VIEEDFGKFDYLFVMDESN 359 (430)
Q Consensus 318 ~~~~~a~~~L~e~Gid~~-~------~~~~-l~~~d~~~~D~Vi~m~~~~ 359 (430)
.--..-.+.++++|...- | ..+. .-+..+.++|+||++.+-.
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v 59 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV 59 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc
Confidence 445677888999999975 4 2221 1355778999999996643
No 83
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=23.33 E-value=1.5e+02 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.1
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINAR 276 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~ 276 (430)
..++||++.+|+.-=|+.+++++..+.
T Consensus 2 ~~v~vC~~~~C~~~Ga~~~~~~l~~~l 28 (80)
T cd03064 2 HVIRVCTGTACHLRGAEALLEALEKKL 28 (80)
T ss_pred EEEEECCCcHHHhCCHHHHHHHHHHHh
Confidence 458999999999999999999887653
No 84
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=23.22 E-value=2.4e+02 Score=28.67 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=45.8
Q ss_pred ceEEEeeecC------CCCCCCCCCCCCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhcccc
Q psy4895 140 NHVLINEYLA------GQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYV 213 (430)
Q Consensus 140 n~~lvN~Y~~------G~~I~~H~D~~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~ 213 (430)
..+.+|+|.+ .-++++|.|... |..|-=-...=+......+ ..-+.|.-.+|+++|--|+.=..|+
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~g~----lTlL~Qd~v~GLQV~~~~~----~~Wi~Vpp~pgalVVNiGD~L~~~T 266 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDPGT----ITLLLQDQVGGLQATRDGG----KTWITVQPVEGAFVVNLGDHGHYLS 266 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCCCe----EEEEecCCCCceEEEECCC----CeEEECCCCCCeEEEEccHHHHHHh
Confidence 3567899986 128999999731 2222100001122222221 3588888899999999999999998
Q ss_pred ccccCCC
Q psy4895 214 HGISSKT 220 (430)
Q Consensus 214 H~I~~~~ 220 (430)
-|.-+..
T Consensus 267 NG~~kSt 273 (358)
T PLN02515 267 NGRFKNA 273 (358)
T ss_pred CCeeeee
Confidence 7766543
No 85
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=23.18 E-value=3.1e+02 Score=24.84 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhcccccCCCCccccccccccCCCceEEeCCCCCHHHHHHHHHHHhcCC----CCcccccccceEEEec
Q psy4895 29 REEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVP----KPKWTQLSNRKLQNWG 104 (430)
Q Consensus 29 ~~ee~~ll~~i~~~~~~~~~~~~~l~~~~~~~lp~Gl~~ipdfls~~ee~~Ll~~l~~~~----~~~w~~~~~rr~~~~G 104 (430)
-++|..+++.+-.......++.......+ ..+|+|++..|++|+-..- -.... ..+=...+--++..||
T Consensus 79 ~~~~~~aWrdlaq~~~T~~G~~s~~e~s~-~sfppgvywhPaWIPL~~d------~~Gnhi~IDLaPgp~g~ygQiI~Fg 151 (191)
T COG4282 79 LDLELIAWRDLAQRDGTYGGEVSPSEGSG-RSFPPGVYWHPAWIPLFGD------PRGNHICIDLAPGPTGGYGQIIWFG 151 (191)
T ss_pred HHHHHHHHHHHHHhcCCcCCccccccccc-ccCCCCccccCceeeeccc------CCCCeEEEecCCCCCCCcceEEEec
Confidence 35577777777664333334332222222 5677899999998874321 00000 0000122234578899
Q ss_pred CcCCCCCCCCCCChhHHHHHHHHHHh
Q psy4895 105 GIPHPKGMIAEKLPEWLDTYLERINQ 130 (430)
Q Consensus 105 ~~~~~~~~~~~~~P~~l~~l~~rl~~ 130 (430)
+..+.+-.+++.++++|..+..-++.
T Consensus 152 rD~dtk~vVa~swaefls~~And~e~ 177 (191)
T COG4282 152 RDEDTKPVVAQSWAEFLSRIANDVET 177 (191)
T ss_pred cccccCeehhccHHHHHHHHHhHHhh
Confidence 98888878888999999887766644
No 86
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=22.21 E-value=1e+02 Score=24.02 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=22.7
Q ss_pred ceEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 249 KAVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 249 t~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
.+++++|..+..-|.|...=+++.+++.+.
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 368999999999897777767677665443
No 87
>PLN02947 oxidoreductase
Probab=22.11 E-value=2.3e+02 Score=28.93 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=46.3
Q ss_pred ceEEEeeecCC------CCCCCCCCCCCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhcccc
Q psy4895 140 NHVLINEYLAG------QGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYV 213 (430)
Q Consensus 140 n~~lvN~Y~~G------~~I~~H~D~~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~ 213 (430)
..+-+|+|.+- -|+++|.|... |..|-=....=+...+ + +.-+.|.-.+|+++|--|+.=..|.
T Consensus 225 ~~lrln~YPp~p~~~~~~G~~~HTD~g~----lTlL~Qd~v~GLQV~~-~-----g~Wi~V~p~pga~VVNvGD~Lq~~S 294 (374)
T PLN02947 225 QMMVVNCYPACPEPELTLGMPPHSDYGF----LTLLLQDEVEGLQIMH-A-----GRWVTVEPIPGSFVVNVGDHLEIFS 294 (374)
T ss_pred eeeeeecCCCCCCcccccCCCCccCCCc----eEEEEecCCCCeeEeE-C-----CEEEeCCCCCCeEEEEeCceeeeee
Confidence 35678999872 28999999631 2222110111122222 2 4688888889999999999999898
Q ss_pred ccccCCCC
Q psy4895 214 HGISSKTD 221 (430)
Q Consensus 214 H~I~~~~~ 221 (430)
-|.-+...
T Consensus 295 NG~~kS~~ 302 (374)
T PLN02947 295 NGRYKSVL 302 (374)
T ss_pred CCEEeccc
Confidence 77666433
No 88
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.60 E-value=1.3e+02 Score=30.06 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=40.2
Q ss_pred cCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHHHhCCCCC
Q psy4895 256 LGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPC 334 (430)
Q Consensus 256 ~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L~e~Gid~ 334 (430)
.|.++.+||.++|++.+.+ +|. +.-+-|.|.|+.. .+...+.+.|+.|...|+ +.....++.++.+
T Consensus 45 vGGTGKTP~v~~L~~~L~~-~G~--~~~IlSRGYg~~~------~~~~~~v~~~~~~~~~GD----Ep~lla~~~~~~V 110 (326)
T PF02606_consen 45 VGGTGKTPLVIWLARLLQA-RGY--RPAILSRGYGRKS------KGEPILVSDGSDAEEVGD----EPLLLARKLPVPV 110 (326)
T ss_pred cCCCCchHHHHHHHHHHHh-cCC--ceEEEcCCCCCCC------CCCeEEEeCCCChhhhcC----HHHHHHHhcCCcE
Confidence 4557899999999998875 443 4556888987532 222455555656644454 3444444555443
No 89
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=21.57 E-value=2.2e+02 Score=28.92 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=45.2
Q ss_pred eEEEeeecCC-----C-CCCCCCCCCCCCCceEEEcCCCc-eEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhcccc
Q psy4895 141 HVLINEYLAG-----Q-GIMPHFDGPLYYPTISTISCGSH-TILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYV 213 (430)
Q Consensus 141 ~~lvN~Y~~G-----~-~I~~H~D~~~~~~~Ia~lSLgs~-~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~ 213 (430)
.+-+|+|.+- . ++++|.|-.. |..| +... .=+...... ..-+.|.-.+|.++|--|+.=..|.
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g~----lTiL-~Qd~v~GLQV~~~~-----~~Wi~V~p~pgalVVNiGD~lq~~S 280 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSSL----LTIL-YQSNTSGLQVFREG-----VGWVTVPPVPGSLVVNVGDLLHILS 280 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCCc----EEEE-ecCCCCCceEECCC-----CEEEEcccCCCCEEEEhHHHHHHHh
Confidence 4558999871 2 8999999631 2222 1110 012222221 3688888889999999999999998
Q ss_pred ccccCCC
Q psy4895 214 HGISSKT 220 (430)
Q Consensus 214 H~I~~~~ 220 (430)
-|.-+..
T Consensus 281 Ng~~kS~ 287 (358)
T PLN02254 281 NGRFPSV 287 (358)
T ss_pred CCeeccc
Confidence 7766643
No 90
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.52 E-value=1.2e+02 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCChhHHHHHHHHHHhccc
Q psy4895 250 AVLFVCLGNICRSPMAACVFKYLINARNQ 278 (430)
Q Consensus 250 ~~lf~c~~N~~RS~mAea~~~~~~~~~~~ 278 (430)
+|+++|.+. .-|.|+..=+++.++++|+
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~~gi 29 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKERGV 29 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHHCCC
Confidence 589999777 5555655667777777765
No 91
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.88 E-value=2.2e+02 Score=27.47 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=44.9
Q ss_pred eEEEeeecCC------CCCCCCCCCCCCCCceEEEcCCCceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhccccc
Q psy4895 141 HVLINEYLAG------QGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVH 214 (430)
Q Consensus 141 ~~lvN~Y~~G------~~I~~H~D~~~~~~~Ia~lSLgs~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w~H 214 (430)
.+-+|.|.+- -++++|.|.. .|..|-=....=+.... + ..-+.|.-.+|+++|.-|+.=..|..
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g----~lTlL~qd~v~GLqV~~-~-----g~Wi~V~p~p~a~vVNiGD~l~~~tn 186 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFG----AITLLIQDDVEGLQLLK-D-----AEWLMVPPISDAILIIIADQTEIITN 186 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCC----eeEEEEeCCCCceEEee-C-----CeEEECCCCCCcEEEEccHHHHHHhC
Confidence 3568889761 2789999963 13333111111122221 2 36778888899999999999999988
Q ss_pred cccCCC
Q psy4895 215 GISSKT 220 (430)
Q Consensus 215 ~I~~~~ 220 (430)
|.-+..
T Consensus 187 g~~~S~ 192 (262)
T PLN03001 187 GNYKSA 192 (262)
T ss_pred Cccccc
Confidence 766643
No 92
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=20.69 E-value=51 Score=22.40 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=13.6
Q ss_pred cccccCCCCceeeccCCcCh
Q psy4895 10 KYVIKKAPPTVYYIPDFITR 29 (430)
Q Consensus 10 ~~~~~~~p~~~~yip~fi~~ 29 (430)
+|-|...=.-.||||+|--.
T Consensus 17 KFhi~~~k~~~y~IP~Y~~~ 36 (41)
T PF12426_consen 17 KFHIGGPKTQPYYIPDYRGI 36 (41)
T ss_pred eeeeCCcccccccCCCCCCc
Confidence 35566555667999998643
No 93
>KOG0143|consensus
Probab=20.25 E-value=2.4e+02 Score=28.12 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=45.4
Q ss_pred eEEEeeecC---C---CCCCCCCCCCCCCCceEEEcCCC--ceEEEEecCCCCCCCCeeEEEEeCCCeEEEecchhhccc
Q psy4895 141 HVLINEYLA---G---QGIMPHFDGPLYYPTISTISCGS--HTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKY 212 (430)
Q Consensus 141 ~~lvN~Y~~---G---~~I~~H~D~~~~~~~Ia~lSLgs--~~~m~f~~~~~~~~~~~~~~l~L~~gSlliMsG~aR~~w 212 (430)
..-+|.|.+ . -|+++|.|... |.+| |.. -.=+.+..++ ..-++|.--+|+++|.-|+.=..|
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~~----lTiL-lqd~~V~GLQv~~~d-----g~Wi~V~P~p~a~vVNiGD~l~~l 246 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKSF----LTIL-LQDDDVGGLQVFTKD-----GKWIDVPPIPGAFVVNIGDMLQIL 246 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcCc----eEEE-EccCCcCceEEEecC-----CeEEECCCCCCCEEEEcccHHhHh
Confidence 668999987 2 29999999752 3333 221 1112332233 468888888899999999998888
Q ss_pred cccccC
Q psy4895 213 VHGISS 218 (430)
Q Consensus 213 ~H~I~~ 218 (430)
.=|+=+
T Consensus 247 SNG~yk 252 (322)
T KOG0143|consen 247 SNGRYK 252 (322)
T ss_pred hCCccc
Confidence 766444
Done!