RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4895
(430 letters)
>gnl|CDD|238063 cd00115, LMWPc, Low molecular weight phosphatase family;.
Length = 141
Score = 152 bits (385), Expect = 1e-44
Identities = 64/176 (36%), Positives = 84/176 (47%), Gaps = 36/176 (20%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K VLFVC GNICRSPMA +F++L + VDSA
Sbjct: 1 KKVLFVCTGNICRSPMAEAIFRHLAPKLD-------------------------IEVDSA 35
Query: 309 GTGDWHVGHPADSRARDVLAKHNVP-CQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
GT WHVG D RA VLA+H + H+ARQ+ E+DF +FD + MDESN A +
Sbjct: 36 GTSGWHVGGRPDPRAIAVLAEHGIDISGHRARQLTEDDFDEFDLIITMDESNLAELLE-- 93
Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423
AK+ LG+Y G + V DPYY +AF+ Y+ + + L
Sbjct: 94 -----PPPGGRAKVELLGEYA--GDREVPDPYYGSL-EAFEEVYDLIEEAIKALLK 141
>gnl|CDD|197586 smart00226, LMWPc, Low molecular weight phosphatase family.
Length = 134
Score = 116 bits (293), Expect = 2e-31
Identities = 58/173 (33%), Positives = 77/173 (44%), Gaps = 40/173 (23%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
+LFVC GNICRSPMA +FK + DR +DSAGT
Sbjct: 1 ILFVCTGNICRSPMAEALFKAYV--------------------------GDRVKIDSAGT 34
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRA 370
G W VG AD RA VL +H + H A Q+ DF D + MD S+ N+
Sbjct: 35 GAW-VGGGADPRAVKVLKEHGIDLSHHASQLTSSDFKNADLVLAMDGSHLRNI-----CR 88
Query: 371 VKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423
+K + AK+ G Y V+DPYY D F+ Y+ + ++FL
Sbjct: 89 LKPPSR--AKVELFGHYV-----DVDDPYYG-GIDGFERVYDELENALQEFLK 133
>gnl|CDD|201802 pfam01451, LMWPc, Low molecular weight phosphotyrosine protein
phosphatase.
Length = 138
Score = 113 bits (284), Expect = 4e-30
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
VLFVC GNICRSPMA +F+ L+ + D+ VDSAGT
Sbjct: 1 VLFVCTGNICRSPMAEALFRALL-PKALGDKIEVDSAGTEAL------------------ 41
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKR 369
G AD RA +V+ +H + H+ARQ+ EE FD + MD + ++
Sbjct: 42 ----PGGSADPRAVEVMKEHGIDISGHRARQLTEELLKSFDLILTMDGEHIRDICPIAPG 97
Query: 370 AVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFL 422
+ AK++ LG + + DPY DAF + R ++ L
Sbjct: 98 GRR------AKVMLLGHH-----WDIPDPYGGSI-DAFREVRDEIERRVKKLL 138
>gnl|CDD|223471 COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction
mechanisms].
Length = 139
Score = 110 bits (278), Expect = 3e-29
Identities = 58/180 (32%), Positives = 80/180 (44%), Gaps = 51/180 (28%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
VLFVC GNICRSPMA + ++L D VDSAGTG
Sbjct: 2 MMKVLFVCTGNICRSPMAEALLRHLA-----PDNVEVDSAGTGG---------------- 40
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPC-QHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
H G P D RA +VLA+H + H+++Q+ EEDF +FD + MDESN A++
Sbjct: 41 ------HPGEPPDPRAVEVLAEHGIDISGHRSKQLTEEDFDEFDLIITMDESNAADLCPL 94
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYR----SCEQFL 422
N +L ++ V DPYY ++ +E YR + + L
Sbjct: 95 A--------PGNTLLLEYEHWE------VPDPYYGSGEE-----FEEVYRLIEDAIKALL 135
>gnl|CDD|138553 PRK11391, etp, phosphotyrosine-protein phosphatase; Provisional.
Length = 144
Score = 58.5 bits (141), Expect = 2e-10
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 45/182 (24%)
Query: 250 AVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAG 309
++L VC GNICRSP+ + R + V SAG
Sbjct: 4 SILVVCTGNICRSPIGERLL------RKRLPGVKVKSAGVHGL----------------- 40
Query: 310 TGDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEK 368
V HPAD+ A DV A H V + H R++ E +D + M+ + A V A
Sbjct: 41 -----VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTA--- 92
Query: 369 RAVKQGIKPN--AKILYLGDY-DPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
I P K + G + + K + DP Y +++DAF+ Y R+ +++ ++
Sbjct: 93 ------IAPEVRGKTMLFGQWLEQKEIP---DP-YRKSQDAFEHVYGMLERASQEWAKRL 142
Query: 426 EK 427
+
Sbjct: 143 SR 144
>gnl|CDD|182256 PRK10126, PRK10126, tyrosine phosphatase; Provisional.
Length = 147
Score = 55.3 bits (133), Expect = 2e-09
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 43/174 (24%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
+L VC+GNICRSP A + + R + V+SAG G
Sbjct: 5 ILVVCVGNICRSPTAERLLQ-----RYHPE-LKVESAGLGAL------------------ 40
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANV--KAFE 367
VG AD A V A+H + + H ARQ+ +D + M++ + + A E
Sbjct: 41 ----VGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPE 96
Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQF 421
R K++ G +D + + DP Y ++++AF+ Y RS Q+
Sbjct: 97 MR---------GKVMLFGHWDNE--CEIPDP-YRKSREAFEAVYTLLERSARQW 138
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.
Length = 190
Score = 47.7 bits (114), Expect = 2e-06
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 65 VYYIPDFITREEESHLLNKIYS-VPKPKWTQLSNRKLQN-------WGGIPHPKG----- 111
+ +P F++ EE++ LL ++ + P + + + G + G
Sbjct: 2 LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTDGPGYRYSG 61
Query: 112 --MIAEKLPEWLDTYL---ERINQLGVFESVKPNHVLINEYLAGQGIMPHFD 158
+ E P + L ER+ +PN L+N Y G + H D
Sbjct: 62 TPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRPGARMGLHQD 113
>gnl|CDD|237415 PRK13530, PRK13530, arsenate reductase; Provisional.
Length = 133
Score = 36.6 bits (85), Expect = 0.005
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAG 288
KK + F+C GN CRS MA K + D+W V SAG
Sbjct: 3 KKTIYFLCTGNSCRSQMAEGWGKQYL-----GDKWNVYSAG 38
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication,
recombination, and repair].
Length = 194
Score = 35.9 bits (83), Expect = 0.022
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 118 PEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFD--GPLYYPTISTISCGSHT 175
P L + + G + P VL+N Y G I H D P ++++S G+
Sbjct: 85 PPLLALFHDLFGAAG-YPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPC 143
Query: 176 ILNFYEPDRTSEGSEVCSIFVDARSLLIL 204
I R G + ++ ++++
Sbjct: 144 IFRLRGRRRRGPGL---RLRLEHGDVVVM 169
>gnl|CDD|131738 TIGR02691, arsC_pI258_fam, arsenate reductase (thioredoxin). This
family describes the well-studied thioredoxin-dependent
arsenate reductase of Staphylococcus aureaus plasmid
pI258 and other mechanistically similar arsenate
reductases. The mechanism involves an intramolecular
disulfide bond cascade, and aligned members of this
family have four absolutely conserved Cys residues. This
group of arsenate reductases belongs to the
low-molecular weight protein-tyrosine phosphatase family
(pfam01451), as does a group of glutathione/glutaredoxin
type arsenate reductases (TIGR02689). At least two
other, non-homologous groups of arsenate reductases
involved in arsenical resistance are also known. This
enzyme reduces arsenate to arsenite, which may be more
toxic but which is more easily exported [Cellular
processes, Detoxification].
Length = 129
Score = 32.8 bits (75), Expect = 0.12
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAG 288
+ F+C GN CRS MA K + D W V SAG
Sbjct: 1 IYFLCTGNSCRSQMAEGWGKKYL-----GDEWEVYSAG 33
>gnl|CDD|133128 cd06597, GH31_transferase_CtsY, CtsY (cyclic
tetrasaccharide-synthesizing enzyme Y) is a bacterial
3-alpha-isomaltosyltransferase, first identified in
Arthrobacter globiformis, that produces cyclic
tetrasaccharides together with a closely related enzyme
CtsZ. CtsY and CtsZ both have a glycosyl hydrolase
family 31 (GH31) catalytic domain. All GH31 enzymes
cleave a terminal carbohydrate moiety from a substrate
that varies considerably in size, depending on the
enzyme, and may be either a starch or a glycoprotein.
Length = 340
Score = 30.6 bits (69), Expect = 1.4
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 40 YSHNLLMTGNNVNVEKYVIKKA--------PPTVYYIPDFITREEESHLLNKIYSVPKPK 91
++ L M+ N + + V+++ P TV I + + E ++ N PK
Sbjct: 9 WAFGLWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQW-SDEATFYVFNDAQYTPKDG 67
Query: 92 WTQLSNRKLQ--NWGGIPHPKGMIAE 115
LS G P+PKGMI E
Sbjct: 68 GAPLSYDDFSFPVEGRWPNPKGMIDE 93
>gnl|CDD|220334 pfam09664, DUF2399, Protein of unknown function C-terminus
(DUF2399). Proteins in this entry are encoded within a
conserved gene four-gene neighborhood found sporadically
in a phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Beta-proteobacteria). Just the
C-terminal region is ioncluded here.
Length = 155
Score = 29.2 bits (66), Expect = 2.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 376 KPNAKILYLGDYDPKGVKI 394
A++ Y GD+D G++I
Sbjct: 65 AAGARLYYSGDFDWPGLRI 83
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 29.1 bits (66), Expect = 2.3
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 361 ANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYS---RAKDA 406
N+K F++ A K G+ DY K K P Y +AKDA
Sbjct: 47 ENLKKFKREAKKYGV----------DYAVKKDKNNGPPKYLVFFKAKDA 85
>gnl|CDD|131736 TIGR02689, ars_reduc_gluta, arsenate reductase,
glutathione/glutaredoxin type. Members of this protein
family represent a novel form of arsenate reductase,
using glutathione and glutaredoxin rather than
thioredoxin for reducing equivalents as do some
homologous arsenate reductases. An example of this type
is Synechocystis sp. strain PCC 6803 slr0946, and of
latter type (excluded from this model) is Staphylococcus
aureus plasmid pI258 ArsC. Both are among the subset of
arsenate reductases that belong the the
low-molecular-weight protein-tyrosine phosphatase
superfamily [Cellular processes, Detoxification].
Length = 126
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAG 288
K V+FVC N CRS MA K L A + V S G
Sbjct: 1 KKVMFVCKRNSCRSQMAEGFAKTL-----GAGKIAVTSCG 35
>gnl|CDD|217734 pfam03797, Autotransporter, Autotransporter beta-domain. Secretion
of protein products occurs by a number of different
pathways in bacteria. One of these pathways known as the
type V pathway was first described for the IgA1
protease. The protein component that mediates secretion
through the outer membrane is contained within the
secreted protein itself, hence the proteins secreted in
this way are called autotransporters. This family
corresponds to the presumed integral membrane
beta-barrel domain that transports the protein. This
domain is found at the C terminus of the proteins it
occurs in. The N terminus contains the variable
passenger domain that is translocated across the
membrane. Once the passenger domain is exported it is
cleaved auto-catalytically in some proteins, in others a
different protease is used and in some cases no cleavage
occurs.
Length = 268
Score = 29.0 bits (65), Expect = 4.4
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 276 RNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWH 314
N +D V ++ + GD+
Sbjct: 81 WNFDGGLYLDGVLAYGRFDNDVKRSVDLGTNYTSKGDYD 119
>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 28.3 bits (64), Expect = 6.6
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 325 DVLAKHNVPCQHQARQVIEEDFGKFDYL 352
DVL K ++ QARQ I EDFG D L
Sbjct: 67 DVLDKESL---EQARQQILEDFGPCDIL 91
>gnl|CDD|220872 pfam10765, DUF2591, Protein of unknown function (DUF2591). This
bacterial family of proteins has no known function.
Length = 110
Score = 27.4 bits (61), Expect = 6.9
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 273 INARNQADRWTVDSAGTGDWHVQHVNQ 299
IN ++ WT TG N
Sbjct: 72 INWQDVNGEWTARHLKTGPNEAYGENP 98
>gnl|CDD|226939 COG4573, GatZ, Predicted tagatose 6-phosphate kinase [Carbohydrate
transport and metabolism].
Length = 426
Score = 28.2 bits (63), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 66 YYIPDFITREEESH--LLNKI-YSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPE 119
YY D + H ++I Y P P+ + N G+ P +I++ LP
Sbjct: 333 YYHGDANAQRLARHYSYSDRIRYYWPHPRIAAAVETLMANLDGVDIPLPLISQYLPR 389
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,018,780
Number of extensions: 2124405
Number of successful extensions: 1771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 23
Length of query: 430
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 330
Effective length of database: 6,502,202
Effective search space: 2145726660
Effective search space used: 2145726660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)