RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4895
(430 letters)
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, hydrolase, protein-ligand complex; HET:
NLA; 1.50A {Homo sapiens} PDB: 5pnt_A* 1xww_A 1bvh_A
1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Length = 157
Score = 212 bits (542), Expect = 4e-68
Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 26/180 (14%)
Query: 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTV 305
K+VLFVCLGNICRSP+A VF+ L+ +N ++ W VDSA T
Sbjct: 3 QATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATS--------------- 47
Query: 306 DSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKA 365
+ +G+P D R + + +H +P H ARQ+ +EDF FDY+ MDESN ++
Sbjct: 48 ------GYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDL-- 99
Query: 366 FEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
R Q AKI LG YDP+ I+EDPYY D F+ Y+ C R C FL K
Sbjct: 100 --NRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FETVYQQCVRCCRAFLEKA 156
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural
genomics center for infect disease, parasitic protozoan,
dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A*
3ily_A 3ido_A*
Length = 161
Score = 205 bits (525), Expect = 2e-65
Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
G +LFVCLGNICRSP A V K +I + +++ DSAGT
Sbjct: 3 GSMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTC---------------- 46
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
+H G ADSR R V +R V+ DF FDY+F MD N+ +
Sbjct: 47 -----SYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDR 101
Query: 367 EKRAVKQGIKPNAKILYLGDYDP-KGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
K KI + D+ V DPYY K F + +CE + K+
Sbjct: 102 CPEQYK------QKIFKMVDFCTTIKTTEVPDPYYGGEKG-FHRVIDILEDACENLIIKL 154
Query: 426 EKNE 429
E+ +
Sbjct: 155 EEGK 158
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase;
HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP:
c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Length = 161
Score = 204 bits (522), Expect = 5e-65
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 30/185 (16%)
Query: 243 STRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADR 302
+ K +V F+ LGN CRSPMA +FK+ + N +R+
Sbjct: 2 TIEKPKISVAFIALGNFCRSPMAEAIFKHEVEKANLENRF-------------------- 41
Query: 303 WTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFAN 362
+DS GT ++HVG D R + +H V H+ +Q+ + F ++DY+ MDESN N
Sbjct: 42 NKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINN 101
Query: 363 VKAFEKRAVKQGIKPNAKILYLGDYDP---KGVKIVEDPYYSRAKDAFDICYEHCYRSCE 419
+K Q AK+ GD++ I+EDP+Y +D F+ ++ +
Sbjct: 102 LKKI------QPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQD-FEYNFKQITYFSK 154
Query: 420 QFLNK 424
QFL K
Sbjct: 155 QFLKK 159
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, structural genomics; 1.90A {Thermus
thermophilus}
Length = 161
Score = 197 bits (503), Expect = 3e-62
Identities = 61/184 (33%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
VLFVCLGNICRSPMA +F+ L+ R DR+ VDSAGTG
Sbjct: 4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTG----------------- 46
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
WHVG P D RAR VL + H AR++ ED +D++ VMD N V
Sbjct: 47 ----AWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLR-- 100
Query: 368 KRAVKQGIKPN--AKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
P K+ + + V+DPYY +D F Y + + FL++
Sbjct: 101 -------RFPEARGKVRLVLEELGG--GEVQDPYYGDLED-FREVYWTLEAALQAFLDRH 150
Query: 426 EKNE 429
Sbjct: 151 GSPS 154
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight,
protein tyrosine phosphatase, bacterial phosphatase; NMR
{Campylobacter jejuni}
Length = 156
Score = 191 bits (489), Expect = 4e-60
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 37/184 (20%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K +LF+CLGNICRSPMA + K L+ N + ++SA
Sbjct: 2 KKILFICLGNICRSPMAEFIMKDLVKKA---------------------NLEKEFFINSA 40
Query: 309 GTGDWHVGHPADSRARDVLAKHNVPC-QHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
GT H G ++ LA+ N+ ++++ ++ + D+L MD SNF NV
Sbjct: 41 GTSGEHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLK-- 98
Query: 368 KRAVKQGIKPN--AKILYLGDYDP-KGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
N K+L + D+ P V DP+YS FD Y+ +C+ L
Sbjct: 99 -------NFTNTQNKVLKITDFSPSLNYDEVPDPWYS---GNFDETYKILSLACKNLLVF 148
Query: 425 VEKN 428
+ K+
Sbjct: 149 LSKH 152
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase,
hydrolase; 1.03A {Staphylococcus aureus}
Length = 158
Score = 191 bits (489), Expect = 5e-60
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 39/185 (21%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
G V FVCLGNICRSPMA + + + RN D V
Sbjct: 5 GMVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD----------------------IKVH 42
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQ-ARQVIEEDFGKFDYLFVMDESNFANVKA 365
S GTG W++G P + +L KHN+P + D FDY+ MD+SN N+K+
Sbjct: 43 SRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATD--DFDYIVAMDQSNVDNIKS 100
Query: 366 FEKRAVKQGIKPN--AKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423
I PN ++ L ++ V DPYY+ + F+ Y+ SC+ ++
Sbjct: 101 ---------INPNLKGQLFKLLEFSNMEESDVPDPYYT---NNFEGVYDMVLSSCDNLID 148
Query: 424 KVEKN 428
+ K+
Sbjct: 149 YIVKD 153
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas
foetus} SCOP: c.44.1.1
Length = 146
Score = 191 bits (487), Expect = 6e-60
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTV 305
A KKAVLFVCLGNICRSP + + ++ D+ +
Sbjct: 2 AEKKAVLFVCLGNICRSPACEGICRDMV--------------------------GDKLII 35
Query: 306 DSAGTGDWHVGHPADSRARDVLAKHNVPC-QHQARQVIEEDFGKFDYLFVMDESNFANVK 364
DSA T +HVG D+R++ V + V + +ARQ+ + DF KFD + +D+S +++
Sbjct: 36 DSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQITKADFSKFDVIAALDQSILSDIN 95
Query: 365 AFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
+ + + AK++ + V+DPYYS D F + + + FL +
Sbjct: 96 SMKPSNCR------AKVVLFNPPNG-----VDDPYYSS--DGFPTMFASISKEMKPFLTE 142
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase;
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
1u2q_A
Length = 163
Score = 190 bits (486), Expect = 2e-59
Identities = 55/184 (29%), Positives = 75/184 (40%), Gaps = 36/184 (19%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
V FVC GNICRSPMA +F + R D V S
Sbjct: 4 PLHVTFVCTGNICRSPMAEKMFAQQLRHR---------------------GLGDAVRVTS 42
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
AGTG+WHVG AD RA VL H P H+A QV E D L +D ++ ++
Sbjct: 43 AGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHL-AADLLVALDRNHARLLRQ-- 99
Query: 368 KRAVKQGIKPN-AKILYLGDYDPKG---VKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423
+ A++ L +DP+ VEDPYY D F+ + + +
Sbjct: 100 -------LGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSD-FEEVFAVIESALPGLHD 151
Query: 424 KVEK 427
V++
Sbjct: 152 WVDE 155
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase;
dephosphorylation, hydrolase; 1.10A {Bacillus subtilis}
PDB: 4eti_A 1zgg_A
Length = 184
Score = 184 bits (469), Expect = 9e-57
Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 40/202 (19%)
Query: 230 NCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGT 289
+ S + Q + R G ++FVC GN RSPMA +FK +
Sbjct: 20 HMASMTGGQQMGR----GSMDIIFVCTGNTSRSPMAEALFKSIAEREG------------ 63
Query: 290 GDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKF 349
V SAG G A A + L + ++ H + + EE
Sbjct: 64 -----------LNVNVRSAGVFASPNG-KATPHAVEALFEKHIALNHVSSPLTEELMESA 111
Query: 350 DYLFVMDESNFANVKAFEKRAVKQGIKPNA--KILYLGDYDPKGVKIVEDPYYSRAKDAF 407
D + M + + + K+ L +Y V DP+ + D +
Sbjct: 112 DLVLAMTHQHKQIIAS---------QFGRYRDKVFTLKEYVTGSHGDVLDPFG-GSIDIY 161
Query: 408 DICYEHCYRSCEQFLNKVEKNE 429
+ Q +++K+
Sbjct: 162 KQTRDELEELLRQLAKQLKKDR 183
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate
binding, hydrolase; NMR {Escherichia coli K12}
Length = 167
Score = 183 bits (467), Expect = 1e-56
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 43/186 (23%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
+L VC+GNICRSP A + + V+SAG G
Sbjct: 22 FNNILVVCVGNICRSPTAERLL------QRYHPELKVESAGLG----------------- 58
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPC-QHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
VG AD A V A+H + H ARQ+ +D + M++ + +
Sbjct: 59 -----ALVGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCE- 112
Query: 367 EKRAVKQGIKPN--AKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
+ P K++ G +D + + DPY ++++ F Y RS Q+
Sbjct: 113 --------MAPEMRGKVMLFGHWDNE--CEIPDPYR-KSRETFAAVYTLLERSARQWAQA 161
Query: 425 VEKNEV 430
+ +V
Sbjct: 162 LNAEQV 167
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia
coli}
Length = 150
Score = 180 bits (459), Expect = 8e-56
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 43/187 (22%)
Query: 244 TRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRW 303
+ ++L +C GNICRSP+ + R ++SAG G
Sbjct: 4 AKLMFDSILVICTGNICRSPIGERLL------RRLLPSKKINSAGVGALV---------- 47
Query: 304 TVDSAGTGDWHVGHPADSRARDVLAKHNVPC-QHQARQVIEEDFGKFDYLFVMDESNFAN 362
H AD A V K+ + H+ + ++D L VM+ S+
Sbjct: 48 ------------DHTADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLLLVMEYSHLEQ 95
Query: 363 VKAFEKRAVKQGIKPN--AKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQ 420
+ I P K + G + K + DPY +AFD Y+ ++ ++
Sbjct: 96 ISR---------IAPEARGKTMLFGHWLDS--KEIPDPYRMSD-EAFDSVYQLLEQASKR 143
Query: 421 FLNKVEK 427
+ K+ +
Sbjct: 144 WAEKLGE 150
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Length = 168
Score = 179 bits (456), Expect = 4e-55
Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 43/191 (22%)
Query: 240 LNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQ 299
+ + ++L +C GNICRSP+ + R ++SAG G
Sbjct: 18 GSHMAKLMFDSILVICTGNICRSPIGERLL------RRLLPSKKINSAGVGALV------ 65
Query: 300 ADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPC-QHQARQVIEEDFGKFDYLFVMDES 358
H AD A V K+ + H+ + ++D L VM+ S
Sbjct: 66 ----------------DHAADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLLLVMEYS 109
Query: 359 NFANVKAFEKRAVKQGIKPN--AKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYR 416
+ + I P K + G + K + DPY +AFD Y+ +
Sbjct: 110 HLEQISR---------IAPEARGKTMLFGHWLDS--KEIPDPYRMSD-EAFDSVYQLLEQ 157
Query: 417 SCEQFLNKVEK 427
+ +++ K+ +
Sbjct: 158 ASKRWAEKLGE 168
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Length = 345
Score = 135 bits (340), Expect = 2e-36
Identities = 47/214 (21%), Positives = 93/214 (43%), Gaps = 23/214 (10%)
Query: 49 NNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIY----SVPKPKWTQLSNRKLQNWG 104
V ++ + PP + + + I+ EEE LL + + + L +R+++++G
Sbjct: 97 EKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFG 156
Query: 105 GIPH-------PKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHF 157
H ++ LP+ +++LE+ + G + KP+ + IN+Y GQGI H
Sbjct: 157 YEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKH-KPDQMTINQYEPGQGIPAHI 215
Query: 158 DG-PLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGI 216
D + I ++S GS +++F PD + + RSLL++ + + HGI
Sbjct: 216 DTHSAFEDEIVSLSLGSEIVMDFKHPDG-----IAVPVMLPRRSLLVMTGESRYLWTHGI 270
Query: 217 SSKTDDTLSSDILNCCSSSPNQ-----MLNRSTR 245
+ + DT+ + + + R R
Sbjct: 271 TCRKFDTVQASESLKSGIITSDVGDLTLSKRGLR 304
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA
damage, DNA repair, iron, M binding, oxidoreductase;
HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A*
2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A*
3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A*
3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Length = 211
Score = 60.4 bits (146), Expect = 8e-11
Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 29/186 (15%)
Query: 62 PPTVYYIPDFITREEESHLLNKI-------------YSVPKPKWTQLSN-RKLQ------ 101
+ F E L+ I ++N L
Sbjct: 6 AAGAVILRRFAFNAAEQ-LIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQ 64
Query: 102 --NWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDG 159
+ I +P+ +R + +P+ LIN Y G + H D
Sbjct: 65 GYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDK 124
Query: 160 --PLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGIS 217
P I ++S G I F R + + ++ +++ + Y HGI
Sbjct: 125 DEPDLRAPIVSVSLGLPAIFQFGGLKR---NDPLKRLLLEHGDVVVWGGESRLFY-HGIQ 180
Query: 218 SKTDDT 223
Sbjct: 181 PLKAGF 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 1e-10
Identities = 70/499 (14%), Positives = 147/499 (29%), Gaps = 158/499 (31%)
Query: 6 VNVEKYVIKKAPPTVYYIPDF----ITREEESHLLNKIYSHN--------LLMTGNNVNV 53
V + +V + D +++EE H++ + + LL + V
Sbjct: 24 VFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-V 79
Query: 54 EKYV----------IKKAPPTVYYIPDFITR---EEESHLLNKI-----YSVPKPK-WTQ 94
+K+V + T P +TR E+ L N Y+V + + + +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 95 LSN--RKLQNWGGIP-HPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQ 151
L +L+ + G+ LG ++ + +
Sbjct: 140 LRQALLELRPAKNVLID--GV------------------LGSGKTW-----VALDVCLSY 174
Query: 152 GIMPHFDGPLYYPTISTISCGSHTIL-----NFY---EPDRTSEGSEVCSIFVD------ 197
+ D +++ ++ +C S + +P+ TS +I +
Sbjct: 175 KVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 198 -----------ARSLLILQDDMYEKYV---HGISSK----TDDTLSSDILNCCSSSPNQM 239
LL+L ++ +S K T +D L+ +++ +
Sbjct: 233 ELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 240 LNRS---TRAGKKAVLFVCLGN--------ICR-SPMAACVFKYLINARNQADRWTVDSA 287
+ S T K++L L + +P + I R+ W
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWD---- 345
Query: 288 GTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRAR---------DVLAKHNVPCQHQA 338
+W +HVN + + +V PA+ R ++P
Sbjct: 346 ---NW--KHVN---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----HIP----- 388
Query: 339 RQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGV------ 392
++ + VM N K + V++ K + + + K
Sbjct: 389 TILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 393 ---KIVEDPYYSRAKDAFD 408
IV+ +Y FD
Sbjct: 445 LHRSIVD--HY-NIPKTFD 460
Score = 47.9 bits (113), Expect = 6e-06
Identities = 55/403 (13%), Positives = 105/403 (26%), Gaps = 130/403 (32%)
Query: 44 LLMTGNNVNVEKYVI---KKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKL 100
+L+T V ++ ++ E +S LL K+ + L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---------KYLDCRPQDL 318
Query: 101 --QNWGGIPHPKGMIAEKLPEWLDTY----------LERINQLGVFESVKPNHVLINEYL 148
+ P +IAE + + L T+ L I + + ++P +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPA--EYRKMF 375
Query: 149 AGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDM 208
+ P + +S ++ F V + SL+ Q
Sbjct: 376 DRLSVFPP-SAHI---PTILLS-----LIWFDVIKSDVM--VVVNKLHK-YSLVEKQPKE 423
Query: 209 YEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACV 268
+ I + + + A+
Sbjct: 424 STISIPSI---------------------YLELKVKLENEYAL----------------- 445
Query: 269 FKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLA 328
+ +++ N + D D++ H+GH
Sbjct: 446 HRSIVDHYNIPKTF--------DSDDLIPPYLDQYFY-------SHIGH----------- 479
Query: 329 KHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEK-RAVKQGIKPNAKIL-YLGD 386
H +H E F +F+ +F ++ K R + IL L
Sbjct: 480 -HLKNIEH------PERMTLFRMVFL----DFRFLEQ--KIRHDSTAWNASGSILNTLQQ 526
Query: 387 YDPKGVKIVE-DPYYSRAKDAFDICYEHCYRSCEQFLNKVEKN 428
I + DP Y R +A FL K+E+N
Sbjct: 527 LKFYKPYICDNDPKYERLVNAI-----------LDFLPKIEEN 558
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium
glutamicum}
Length = 148
Score = 54.2 bits (131), Expect = 3e-09
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 30/109 (27%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K+VLFVC+GN +S MAA + + A D + S
Sbjct: 20 MKSVLFVCVGNGGKSQMAAALAQKY--------------AS------------DSVEIHS 53
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGK-FDYLFVM 355
AGT + + + +A+ + I+ + + D + ++
Sbjct: 54 AGT---KPAQGLNQLSVESIAEVGADMSQGIPKAIDPELLRTVDRVVIL 99
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold,
reduction of to arsenite, oxidoreductase; 2.20A
{Corynebacterium glutamicum}
Length = 213
Score = 54.4 bits (131), Expect = 8e-09
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 42/145 (28%)
Query: 221 DDTLSSDILNCCSSSPNQMLNRSTRA------GKKAVLFVCLGNICRSPMAACVFKYLIN 274
+ + + L+ A VLF+C+ N RS +A+ + +
Sbjct: 48 TAKIHTHLPILAEGFAKDRLHALAVAEGKVASPVPQVLFICVHNAGRSQIASALLSHY-- 105
Query: 275 ARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADS---RARDVLAKHN 331
AG V SAG+ PA ++L++
Sbjct: 106 ------------AG------------SSVEVRSAGS------LPASEIHPLVLEILSERG 135
Query: 332 VPCQHQARQVIEEDFG-KFDYLFVM 355
V + + +D DY+ M
Sbjct: 136 VNISDAFPKPLTDDVIRASDYVITM 160
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA
repair, demethylase, beta jellyroll; HET: AKG; 1.50A
{Homo sapiens} SCOP: b.82.2.10
Length = 238
Score = 54.5 bits (130), Expect = 1e-08
Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 28/177 (15%)
Query: 63 PTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEK------ 116
V P F+ +E +L ++ W Q + + P E
Sbjct: 40 SRVCLYPGFVDVKEADWILEQLCQ--DVPWKQRTGIREDITYQQPRLTAWYGELPYTYSR 97
Query: 117 --------LPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQ-GIMPHFDGPLYY---P 164
L T RI + N +L N Y + + H D P
Sbjct: 98 ITMEPNPHWHPVLRTLKNRIEE---NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCP 154
Query: 165 TISTISCGSHTILNF-----YEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGI 216
I+++S G+ E + E I +D +LLI++ + H +
Sbjct: 155 IIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRV 211
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form,
structural genomics, PSI, protein structure initiative;
2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Length = 124
Score = 51.8 bits (125), Expect = 1e-08
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 36/108 (33%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
VLFVC+ N RS MA +F + A W +SAG
Sbjct: 2 VLFVCIHNTARSVMAEALFNAM------AKSWKAESAGV--------------------- 34
Query: 311 GDWHVGHPADS---RARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVM 355
A+ + +LA+ + + + R V E + FD + +
Sbjct: 35 ------EKAERVDETVKRLLAERGLKAKEKPRTVDEVNLDDFDLIVTV 76
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase;
1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A
1z2e_A 2ipa_B
Length = 139
Score = 49.9 bits (120), Expect = 1e-07
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 35/111 (31%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K + F+C GN CRS MA K D W V SAG
Sbjct: 3 NKIIYFLCTGNSCRSQMAEGWAKQY-----LGDEWKVYSAGI------------------ 39
Query: 308 AGTGDWHVGHPA--DSRARDVLAKHNVPCQHQARQVIEEDFG-KFDYLFVM 355
+ A + + + +Q +I+ D D + +
Sbjct: 40 ---------EAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTL 81
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase;
NMR {Synechocystis} PDB: 2l18_A 2l19_A
Length = 134
Score = 49.1 bits (118), Expect = 2e-07
Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 31/109 (28%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K V+FVC N CRS MA K L A + V S G V+
Sbjct: 4 MKKVMFVCKRNSCRSQMAEGFAKTL-----GAGKIAVTSCGL---ESSRVHP-------- 47
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFG-KFDYLFVM 355
A ++ + + Q IE +D + +
Sbjct: 48 --------------TAIAMMEEVGIDISGQTSDPIENFNADDYDVVISL 82
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid,
oxidoreductase; 1.12A {Staphylococcus aureus} SCOP:
c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A
2cd7_A 1lk0_A
Length = 131
Score = 48.3 bits (116), Expect = 3e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGT 289
KK + F+ GN RS MA K ++ + W V SAG
Sbjct: 3 KKTIYFISTGNSARSQMAEGWGKEILG-----EGWNVYSAGI 39
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA
complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma,
oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo
sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A*
3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A*
3btx_A* 3bu0_A* 3btz_A*
Length = 204
Score = 37.8 bits (87), Expect = 0.003
Identities = 29/205 (14%), Positives = 55/205 (26%), Gaps = 40/205 (19%)
Query: 20 VYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESH 79
+ E + ++ + F
Sbjct: 12 DSSYTVLFGKAEADEIFQELEKE-------------------------VEYFTGALARVQ 46
Query: 80 LLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKP 139
+ K +SVP+ + T + G+ + L+ + ++
Sbjct: 47 VFGKWHSVPRKQATYGDAGLTYTFSGLTLS----PKPWIPVLERIRDHVSG---VTGQTF 99
Query: 140 NHVLINEYLAGQ-GIMPHFDGPLYY---PTISTISCGSHTILNF----YEPDRTSEGSEV 191
N VLIN Y G I H D I+++S G+ F S V
Sbjct: 100 NFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAV 159
Query: 192 CSIFVDARSLLILQDDMYEKYVHGI 216
+ + SLL++ + H +
Sbjct: 160 VRLPLAHGSLLMMNHPTNTHWYHSL 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.019
Identities = 38/258 (14%), Positives = 65/258 (25%), Gaps = 101/258 (39%)
Query: 12 VIKKAPP--TVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIP 69
++ P T+++ E+ + + YS M + K +K +
Sbjct: 1664 IVINNPVNLTIHFGG------EKGKRIRENYS---AMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 70 DFITREEESHLLNKIYSVPKPKWTQ-----LS---NRKLQNWGGIP-------HPKGMIA 114
T E LL+ ++TQ + L++ G IP H
Sbjct: 1715 TSYTFRSEKGLLSA------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----- 1763
Query: 115 EKLPEWLDTYLERINQLGVFESVKPNHVLINEY--LAGQ-GIMPHFDGPLYYPTISTISC 171
LG EY LA +M + S +
Sbjct: 1764 ----------------LG-------------EYAALASLADVMS-IE--------SLVE- 1784
Query: 172 GSHTILNFY-------EPDRTSEGSEVCSIF--VDARSLLILQDDMYEKYVHGISSKTDD 222
+ FY R G + R + + V + +T
Sbjct: 1785 -----VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 223 TLSSDI--LNCCSSSPNQ 238
+ I N NQ
Sbjct: 1840 LVE--IVNYNV----ENQ 1851
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.35
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 367 EKRAVKQGIKPNAKILYLGDYDPK-GVK-IVE 396
EK+A+K+ ++ + K LY D P +K +E
Sbjct: 18 EKQALKK-LQASLK-LYADDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 0.99
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 20/38 (52%)
Query: 54 EKYVIKKAPPTVYYIPDFITREEESHLLNKIY---SVP 88
EK +KK ++ L K+Y S P
Sbjct: 18 EKQALKKL---------------QASL--KLYADDSAP 38
Score = 28.8 bits (63), Expect = 2.3
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 9 EKYVIKKAPPTV-YYIPD 25
EK +KK ++ Y D
Sbjct: 18 EKQALKKLQASLKLYADD 35
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 29.9 bits (67), Expect = 1.7
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 276 RNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRAR 324
+ W + + H H++ W ++ + D+R R
Sbjct: 345 VEGVELWEIVNDKASMPHPMHLHGFPMWIIERKDSPRQVAELAVDNRGR 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 131 LGVFESVK-PNHVLINEYLAGQGIMPHFDGPLY 162
+G +VK P + L+ EY ++ HFD LY
Sbjct: 57 IGHQGNVKSPTYTLVEEYNIAGKMIYHFD--LY 87
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 29.0 bits (64), Expect = 2.7
Identities = 9/50 (18%), Positives = 12/50 (24%)
Query: 274 NARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRA 323
A + + DW A W +A W G A
Sbjct: 248 GTDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAA 297
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 347 GKFDYLFVMDES-----NFANVKAFEKRAVKQGIKPNAKI 381
G FD F++D+S ++ + F ++ + I P ++
Sbjct: 6 GGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRM 45
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 347 GKFDYLFVMDES-----NFANVKAFEKRAVKQGIKPNAKI 381
FD FV+D+S N+ + F ++ ++ + P ++
Sbjct: 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRL 44
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 28.5 bits (63), Expect = 4.0
Identities = 4/44 (9%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 1 MTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNL 44
+T ++ ++I R E+ + +
Sbjct: 30 LTNLVFRAGDLCLRIPGKGT---EEYINRANEAVAAREAAKAGV 70
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.5 bits (63), Expect = 4.6
Identities = 22/128 (17%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 24 PDFITREEESHLLNKIYSHNLLMTGNNVNVE---------KYVIKKAPPTVYYIPDFITR 74
DF RE+E L + + L+ G K I + Y+
Sbjct: 13 KDFFDREKEIEKLKGLRAPITLVLG-----LRRTGKSSIIKIGINELNLPYIYLDLRKFE 67
Query: 75 EEESHLLNKIYSVPKPKWTQLSNR------KLQNWGGIPHPKGMIAEKLPE----WLDTY 124
E + + +L R L+N GI I
Sbjct: 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 127
Query: 125 LERINQLG 132
LE Q
Sbjct: 128 LESFEQAS 135
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 28.4 bits (63), Expect = 5.1
Identities = 10/126 (7%), Positives = 28/126 (22%), Gaps = 5/126 (3%)
Query: 48 GNNVNVEKYVIKKAPPTVYYIPDF--ITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGG 105
++ V ++ + +++ Y P+W L ++
Sbjct: 85 YSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDAS---SYYLNLFPQWDYLETGHYPDFSS 141
Query: 106 IPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPT 165
K ++LD I ++ + + Y
Sbjct: 142 TAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAP 201
Query: 166 ISTISC 171
+
Sbjct: 202 TFITTD 207
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 28.2 bits (62), Expect = 6.5
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 274 NARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGD 312
N +Q + V S G ++ + N+ +D G+
Sbjct: 138 NLDDQ--YFYVRSRGPELFYGRLRNEKSDLCLDVEGSDG 174
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 27.8 bits (61), Expect = 6.8
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 339 RQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQ 373
EE ++ FAN + A +
Sbjct: 311 GDRFEEIAPGTLVKIKPEDLQFANALGYRDAAERS 345
>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal
site, magnes unknown function; HET: NAG; 1.90A
{Thielavia terrestris} PDB: 3eii_A*
Length = 208
Score = 27.3 bits (60), Expect = 7.9
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 267 CVFKYLINARNQADRWTVDSAGTGDWH--VQHVNQADRWTV-DSAGTGDWHVGHPADSRA 323
V Y+ + D + + G W + S G + V P ++
Sbjct: 71 PVQFYMARVPDGEDINSWNGDGA-VWFKVYEDHPTFGAQLTWPSTGKSSFAVPIPPCIKS 129
Query: 324 RDVLAKHNVPCQHQARQV 341
L + H A+ V
Sbjct: 130 GYYLLRAEQIGLHVAQSV 147
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle,
phosphorylation, plant, hydrolase; NMR {Arabidopsis
thaliana} SCOP: c.46.1.1
Length = 152
Score = 26.8 bits (59), Expect = 8.9
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQ 278
K ++F + R P A ++ + +
Sbjct: 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKE 115
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea
jecorina}
Length = 249
Score = 27.3 bits (60), Expect = 9.6
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 12/127 (9%)
Query: 221 DDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQAD 280
D + DI C ++ ++ + AG ++F + P + Y++
Sbjct: 69 DQYTTPDI-VCHKNAAPGAISATAAAGSN-IVFQWGPGVWPHPYG-PIVTYVVECSGSCT 125
Query: 281 RWTVDSAGTGDW----HVQHVNQADRWTVD--SAGTGDWHVGHPADSRARDVLAKHNVPC 334
+ W W W V P+ R + + +H +
Sbjct: 126 TV---NKNNLRWVKIQEAGINYNTQVWAQQDLINQGNKWTVKIPSSLRPGNYVFRHELLA 182
Query: 335 QHQARQV 341
H A
Sbjct: 183 AHGASSA 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,748,208
Number of extensions: 404830
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 53
Length of query: 430
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 334
Effective length of database: 4,021,377
Effective search space: 1343139918
Effective search space used: 1343139918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)