RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4895
(430 letters)
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus)
[TaxId: 9913]}
Length = 157
Score = 115 bits (288), Expect = 2e-31
Identities = 73/179 (40%), Positives = 91/179 (50%), Gaps = 26/179 (14%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
K+VLFVCLGNICRSP+A VF+ L+ + N +D W +D
Sbjct: 4 VTKSVLFVCLGNICRSPIAEAVFRKLVTDQ---------------------NISDNWVID 42
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
S DW+VG D RA L H + H+ARQV +EDF FDY+ MDESN ++
Sbjct: 43 SGAVSDWNVGRSPDPRAVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDL--- 99
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
R Q AKI LG YDP+ I+EDPYY F+ Y+ C R C FL KV
Sbjct: 100 -NRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGND-ADFETVYQQCVRCCRAFLEKV 156
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 159
Score = 109 bits (272), Expect = 5e-29
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
K +V F+ LGN CRSPMA +FK+ + N +R+ +DS
Sbjct: 5 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRF--------------------NKIDS 44
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
GT ++HVG D R + +H V H+ +Q+ + F ++DY+ MDESN N+K +
Sbjct: 45 FGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQ 104
Query: 368 KRAVKQGIKPNAKILYLGDYDPK---GVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
K AK+ GD++ I+EDP+Y F+ ++ +QFL K
Sbjct: 105 PEGSK------AKVCLFGDWNTNDGTVQTIIEDPWYGDI-QDFEYNFKQITYFSKQFLKK 157
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus
[TaxId: 5724]}
Length = 146
Score = 101 bits (252), Expect = 3e-26
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 40/180 (22%)
Query: 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTV 305
A KKAVLFVCLGNICRSP + + ++ D+ +
Sbjct: 2 AEKKAVLFVCLGNICRSPACEGICRDMV--------------------------GDKLII 35
Query: 306 DSAGTGDWHVGHPADSRARDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVK 364
DSA T +HVG D+R++ V + V +ARQ+ + DF KFD + +D+S +++
Sbjct: 36 DSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQITKADFSKFDVIAALDQSILSDIN 95
Query: 365 AFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
+ + + AK++ + V+DPYYS D F + + + FL +
Sbjct: 96 SMKPSNCR------AKVVLFNPPNG-----VDDPYYSS--DGFPTMFASISKEMKPFLTE 142
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
{Escherichia coli [TaxId: 562]}
Length = 200
Score = 62.0 bits (150), Expect = 6e-12
Identities = 26/186 (13%), Positives = 49/186 (26%), Gaps = 29/186 (15%)
Query: 62 PPTVYYIPDFITREEESHLLNKIYSVPKP--------------KWTQLSNRKLQ------ 101
+ F E L+ I V + L
Sbjct: 2 AAGAVILRRFAFNAAEQ-LIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQ 60
Query: 102 --NWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFD- 158
+ I +P+ +R + +P+ LIN Y G + H D
Sbjct: 61 GYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDK 120
Query: 159 -GPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGIS 217
P I ++S G I ++ + + ++ +++ + Y HGI
Sbjct: 121 DEPDLRAPIVSVSLGLPAI---FQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFY-HGIQ 176
Query: 218 SKTDDT 223
Sbjct: 177 PLKAGF 182
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis
[TaxId: 1423]}
Length = 137
Score = 59.6 bits (143), Expect = 1e-11
Identities = 24/175 (13%), Positives = 45/175 (25%), Gaps = 44/175 (25%)
Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
K + F+C GN CRS MA K GD +
Sbjct: 2 KIIYFLCTGNSCRSQMAEGWAKQY----------------LGDEWKVYSA---------- 35
Query: 309 GTGDWHVGHPADSRARDVLAKHNVPCQH-QARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
H + A + + + + + + + D + +
Sbjct: 36 ----GIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLCGDAADKCPMTP 91
Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFL 422
P+ K + G DP + E+ + F + ++F
Sbjct: 92 ---------PHVKREHWGFDDPARAQGTEEEKW----AFFQRVRDEIGNRLKEFA 133
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus
aureus [TaxId: 1280]}
Length = 130
Score = 56.4 bits (135), Expect = 2e-10
Identities = 29/177 (16%), Positives = 44/177 (24%), Gaps = 48/177 (27%)
Query: 248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDS 307
KK + F+ GN RS MA K + W V SAG V
Sbjct: 2 KKTIYFISTGNSARSQMAEGWGK-----EILGEGWNVYSAGIETHGVNPKAIEAMKE--- 53
Query: 308 AGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
H + + + + D + + N
Sbjct: 54 ---------------------VDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPIL- 91
Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNK 424
PN K + G DP G + F + + E+F +
Sbjct: 92 --------PPNVKKEHWGFDDPAGKEW----------SEFQRVRDEIKLAIEKFKLR 130
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 124
Score = 54.5 bits (130), Expect = 7e-10
Identities = 24/173 (13%), Positives = 48/173 (27%), Gaps = 51/173 (29%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGT 310
VLFVC+ N RS MA +F + A W +SAG
Sbjct: 2 VLFVCIHNTARSVMAEALFNAM---------------------------AKSWKAESAGV 34
Query: 311 GDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRA 370
R + + + + R V E + FD + + + +
Sbjct: 35 EKAERVDETVKRLLA---ERGLKAKEKPRTVDEVNLDDFDLIVTVC-----------EES 80
Query: 371 VKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423
+ + + +E+P + + + ++ +
Sbjct: 81 SCVVLPTDKPVTRWH---------IENPAG-KDEGTYRRVLAEIEERVKKLVG 123
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 210
Score = 55.7 bits (133), Expect = 1e-09
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 54/228 (23%)
Query: 11 YVIKKAP---PTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYY 67
Y I +P V P F+ +E +L ++
Sbjct: 9 YEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQD------------------------- 43
Query: 68 IPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEK----LPEWLDT 123
+ ++ + + T R +G +P+ I + L T
Sbjct: 44 ----VPWKQRTG--------IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRT 91
Query: 124 YLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYY---PTISTISCGSHTILNFY 180
RI + + + + H D P I+++S G+
Sbjct: 92 LKNRIEEN--TGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMR 149
Query: 181 EPDRTSEGS-----EVCSIFVDARSLLILQDDMYEKYVHGISSKTDDT 223
+ E E I +D +LLI++ + H + +
Sbjct: 150 KKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSR 197
>d2fika2 d.19.1.1 (A:8-185) CD1, alpha-1 and alpha-2 domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 178
Score = 26.4 bits (58), Expect = 4.6
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 70 DFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIP-HPKGMIAEKLPEWLDTYLE 126
+ S P W L + L G + ++ + P ++ LE
Sbjct: 117 YVVRFWGTSW----QTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLE 170
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia
heterothallica, aka Myceliophthora thermophila [TaxId:
78579]}
Length = 332
Score = 26.8 bits (58), Expect = 5.3
Identities = 10/68 (14%), Positives = 19/68 (27%)
Query: 356 DESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCY 415
N A KRA G+ Y + + + + S + Y +
Sbjct: 55 GNYNLDYNIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTL 114
Query: 416 RSCEQFLN 423
+ + N
Sbjct: 115 DAANKLQN 122
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 26.0 bits (56), Expect = 7.2
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 347 GKFDYLFVMDES------NFANVKAFEKRAVKQ 373
G D +F+ D S F + F K +K+
Sbjct: 1 GNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKK 33
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent
methylenetetrahydromethanopterin dehydrogenase (MTD)
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 282
Score = 26.3 bits (58), Expect = 7.2
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 251 VLFVCLGNICRSPMAACVFKYLINARNQADRWTVDS--AGTG---------DWHVQHVNQ 299
+F+ GN+ S M L++ R ADR V+ GT ++
Sbjct: 5 AIFIKCGNLGTSMMM----DMLLDER--ADREDVEFRVVGTSVKMDPECVEAAVEMALDI 58
Query: 300 ADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPC 334
A+ + D G + P S+AR++LA P
Sbjct: 59 AEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPA 93
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 26.4 bits (57), Expect = 8.0
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 310 TGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKR 369
TG H+GH D+ +D L ++ + + + + +L D + A E+
Sbjct: 46 TGSLHMGHALDNSLQDALIRYK---RMRGFEAV--------WLPGTDHAGIATQVVVERL 94
Query: 370 AVKQGIKPN 378
+K+G +
Sbjct: 95 LLKEGKTRH 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,692,944
Number of extensions: 81059
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 16
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)