BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4897
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/267 (40%), Positives = 156/267 (58%), Gaps = 22/267 (8%)
Query: 97 VVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVD 156
++EL G G G G +W +V +SL ED ++++ + LN
Sbjct: 11 LLELRCGAGSGAGGE-------RWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEP 63
Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT 216
+ +P+++ Q+R + V+K++ GLGISIKGG+ENKMPILISKIFKG+AADQT
Sbjct: 64 GAA----PPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQT 119
Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
E L+VGDAILSVNGEDL ATHDEAV+ALK+ GK V LEVKY++EV+PYF+ ++ + VG
Sbjct: 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVG 179
Query: 277 WE------LQRGFLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHYDSENRTLELHSP 330
W+ LQR S ++ +++ L++ Y+ R D E R LE+ +
Sbjct: 180 WDSPPASPLQRQPSSPGPQPRNL-----SEAKHVSLKMAYVSRRCTPTDPEPRYLEICAA 234
Query: 331 DGVHSCILRASDASEASLWFNTLHSTL 357
DG + LRA D + A W + + +
Sbjct: 235 DGQDAVFLRAKDEASARSWAGAIQAQI 261
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 69/91 (75%), Gaps = 3/91 (3%)
Query: 12 EAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 71
EA R + + GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAI
Sbjct: 72 EALLLQRRRV---TVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAI 128
Query: 72 LSVNGEDLREATHDEAVKALKRAGKVVELEV 102
LSVNGEDL ATHDEAV+ALK+ GK V LEV
Sbjct: 129 LSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 133 bits (335), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/87 (74%), Positives = 77/87 (88%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
Q+R + V+K++ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL
Sbjct: 4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 63
Query: 234 REATHDEAVKALKRAGKLVELEVKYLR 260
ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 64 SSATHDEAVQALKKTGKEVVLEVKYMK 90
Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL ATHDEAV+ALK
Sbjct: 17 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76
Query: 93 RAGKVVELEV 102
+ GK V LEV
Sbjct: 77 KTGKEVVLEV 86
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 133 bits (335), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/87 (74%), Positives = 77/87 (88%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+R + V+K++ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL
Sbjct: 1 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 60
Query: 235 EATHDEAVKALKRAGKLVELEVKYLRE 261
ATHDEAV+ALK+ GK V LEVKY++E
Sbjct: 61 SATHDEAVQALKKTGKEVVLEVKYMKE 87
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL ATHDEAV+ALK
Sbjct: 13 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 72
Query: 93 RAGKVVELEV 102
+ GK V LEV
Sbjct: 73 KTGKEVVLEV 82
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 132 bits (331), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+R + V+K++ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL
Sbjct: 1 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 60
Query: 235 EATHDEAVKALKRAGKLVELEVKYLR 260
ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 61 SATHDEAVQALKKTGKEVVLEVKYMK 86
Score = 119 bits (297), Expect = 8e-27, Method: Composition-based stats.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL ATHDEAV+ALK
Sbjct: 13 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 72
Query: 93 RAGKVVELEV 102
+ GK V LEV
Sbjct: 73 KTGKEVVLEV 82
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 129 bits (325), Expect = 4e-30, Method: Composition-based stats.
Identities = 64/87 (73%), Positives = 75/87 (86%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R +RV K E GLGISIKGG+EN+MPILISKIF G+AADQ+ L +GDAILSVNG DLR+
Sbjct: 5 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 64
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREV 262
ATHD+AV+ALKRAGK V LEVK++REV
Sbjct: 65 ATHDQAVQALKRAGKEVLLEVKFIREV 91
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/73 (76%), Positives = 64/73 (87%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E GLGISIKGG+EN+MPILISKIF G+AADQ+ L +GDAILSVNG DLR+ATHD+AV+
Sbjct: 13 EAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQ 72
Query: 90 ALKRAGKVVELEV 102
ALKRAGK V LEV
Sbjct: 73 ALKRAGKEVLLEV 85
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 166 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 225
Query: 88 VKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLN 147
V ALK VV L+V ++Y + ++ IS + D T +
Sbjct: 226 VAALKNTYDVVYLKVAKP-SNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMT 284
Query: 148 GTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKI 207
T + DIP +RI+ + S GLG +I GG E+ I IS I
Sbjct: 285 PTSPRRYSPVAKDLLGEEDIP---REPRRIVIHRGS--TGLGFNIVGG-EDGEGIFISFI 338
Query: 208 FKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
G AD + +L GD ILSVNG DLR A+H++A ALK AG+ V + +Y E
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 129 AAVEALKEAGSIVRLYV 145
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 129 AAVEALKEAGSIVRLYV 145
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R + + K ++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+
Sbjct: 4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 63
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
H EAV L + +E EV Y+
Sbjct: 64 TKHKEAVTILSQQRGEIEFEVVYV 87
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+ H EAV
Sbjct: 12 DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVT 71
Query: 90 ALKRAGKVVELEV 102
L + +E EV
Sbjct: 72 ILSQQRGEIEFEV 84
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R + + K ++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+
Sbjct: 11 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
H EAV L + +E EV Y+
Sbjct: 71 TKHKEAVTILSQQRGEIEFEVVYV 94
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+ H EAV
Sbjct: 19 DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVT 78
Query: 90 ALKRAGKVVELEV 102
L + +E EV
Sbjct: 79 ILSQQRGEIEFEV 91
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R + + K ++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+
Sbjct: 29 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
H EAV L + +E EV Y+
Sbjct: 89 TKHKEAVTILSQQRGEIEFEVVYV 112
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+ H EAV
Sbjct: 37 DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVT 96
Query: 90 ALKRAGKVVELEV 102
L + +E EV
Sbjct: 97 ILSQQRGEIEFEV 109
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 185 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D IL VN D+R+ TH
Sbjct: 21 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHS 80
Query: 240 EAVKALKRAGKLVELEVKYLREVT 263
+AV+ALK AG +V L VK + V+
Sbjct: 81 KAVEALKEAGSIVRLYVKRRKPVS 104
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 26 YKYTE------NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSV 74
Y+Y E N+GLG SI GG +N I I+KI G AA Q +L V D IL V
Sbjct: 10 YEYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRV 69
Query: 75 NGEDLREATHDEAVKALKRAGKVVELEV 102
N D+R+ TH +AV+ALK AG +V L V
Sbjct: 70 NEVDVRDVTHSKAVEALKEAGSIVRLYV 97
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 185 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D IL VN D+R+ TH
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHS 70
Query: 240 EAVKALKRAGKLVELEVK 257
+AV+ALK AG +V L VK
Sbjct: 71 KAVEALKEAGSIVRLYVK 88
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D IL VN D+R+ TH
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHS 70
Query: 86 EAVKALKRAGKVVELEV 102
+AV+ALK AG +V L V
Sbjct: 71 KAVEALKEAGSIVRLYV 87
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 22 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 81
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 82 AAVEALKEAGSIVRLYV 98
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 22 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 81
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 82 AAVEALKEAGSIVRLYV 98
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 119 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 178
Query: 88 VKALKRAGKVVELEVG 103
V ALK VV L+V
Sbjct: 179 VAALKNTYDVVYLKVA 194
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 119 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 178
Query: 242 VKALKRAGKLVELEV 256
V ALK +V L+V
Sbjct: 179 VAALKNTYDVVYLKV 193
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 72 AAVEALKEAGSIVRLYV 88
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 72 AAVEALKEAGSIVRLYV 88
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 109 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 168
Query: 88 VKALKRAGKVVELEVG 103
V ALK VV L+V
Sbjct: 169 VAALKNTYDVVYLKVA 184
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 109 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 168
Query: 242 VKALKRAGKLVELEV 256
V ALK +V L+V
Sbjct: 169 VAALKNTYDVVYLKV 183
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 75 AAVEALKEAGSIVRLYV 91
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 75 AAVEALKEAGSIVRLYV 91
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 171
Query: 88 VKALKRAGKVVELEVG 103
V ALK VV L+V
Sbjct: 172 VAALKNTYDVVYLKVA 187
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 171
Query: 242 VKALKRAGKLVELEV 256
V ALK +V L+V
Sbjct: 172 VAALKNTYDVVYLKV 186
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 71 AAVEALKEAGSIVRLYV 87
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 71 AAVEALKEAGSIVRLYV 87
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 71 AAVEALKEAGSIVRLYV 87
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 71 AAVEALKEAGSIVRLYV 87
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 86 EAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 72 AAVEALKEAGSIVRLYV 88
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 240 EAVKALKRAGKLVELEV 256
AV+ALK AG +V L V
Sbjct: 72 AAVEALKEAGSIVRLYV 88
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 161 FMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLY 220
F+ DIP +RI+ + S GLG +I GG E+ I IS I G AD + +L
Sbjct: 5 FLGEEDIP---REPRRIVIHRGS--TGLGFNIIGG-EDGEGIFISFILAGGPADLSGELR 58
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
GD ILSVNG DLR A+H++A ALK AG+ V + +Y E F S ++ G
Sbjct: 59 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVNSSG 114
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG E+ I IS I G AD + +L GD ILSVNG DLR A+H++A A
Sbjct: 24 STGLGFNIIGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 82
Query: 91 LKRAGKVVEL 100
LK AG+ V +
Sbjct: 83 LKNAGQTVTI 92
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 161 FMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLY 220
F+ DIP +RI+ + S GLG +I GG E+ I IS I G AD + +L
Sbjct: 5 FLGEEDIP---REPRRIVIHRGS--TGLGFNIVGG-EDGEGIFISFILAGGPADLSGELR 58
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
GD ILSVNG DLR A+H++A ALK AG+ V + +Y E F S + G
Sbjct: 59 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSG 114
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLG +I GG E+ I IS I G AD + +L GD ILSVNG DLR A+H++A ALK
Sbjct: 26 GLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84
Query: 93 RAGKVVEL 100
AG+ V +
Sbjct: 85 NAGQTVTI 92
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
D ++II K S GLG +I GG E+ I +S I G AD + +L GD ILSV
Sbjct: 8 DFTREPRKIILHKGS--TGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSV 64
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKY 258
NG +LR ATH++A ALKRAG+ V + +Y
Sbjct: 65 NGVNLRNATHEQAAAALKRAGQSVTIVAQY 94
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 16 FSSRDFYSENYK---YTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 72
+ DF E K + + GLG +I GG E+ I +S I G AD + +L GD IL
Sbjct: 4 LAEEDFTREPRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRIL 62
Query: 73 SVNGEDLREATHDEAVKALKRAGKVVEL 100
SVNG +LR ATH++A ALKRAG+ V +
Sbjct: 63 SVNGVNLRNATHEQAAAALKRAGQSVTI 90
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
++II K S GLG +I GG E+ I +S I G AD + +L GD ILSVNG +LR
Sbjct: 17 RKIILHKGS--TGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 73
Query: 235 EATHDEAVKALKRAGKLVELEVKYLRE 261
ATH++A ALKRAG+ V + +Y E
Sbjct: 74 NATHEQAAAALKRAGQSVTIVAQYRPE 100
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG E+ I +S I G AD + +L GD ILSVNG +LR ATH++A A
Sbjct: 25 STGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAA 83
Query: 91 LKRAGKVVEL 100
LKRAG+ V +
Sbjct: 84 LKRAGQSVTI 93
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 171 VENQKRIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVN 229
V Q+ II + K +GLG+SI GGK+ + I+I ++++ AA + +L+ GD IL VN
Sbjct: 14 VPGQEMIIEISKG-RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN 72
Query: 230 GEDLREATHDEAVKALKRAGKLVELEV 256
G DLR ++H+EA+ AL++ + V L V
Sbjct: 73 GVDLRNSSHEEAITALRQTPQKVRLVV 99
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 9 GPTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYV 67
GP ++ E K +GLG+SI GGK+ + I+I ++++ AA + +L+
Sbjct: 7 GPATCPIVPGQEMIIEISKG--RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWA 64
Query: 68 GDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
GD IL VNG DLR ++H+EA+ AL++ + V L V
Sbjct: 65 GDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVV 99
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N I I+KI G AA + +L V D IL VN D+ E +H
Sbjct: 19 NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 78
Query: 240 EAVKALKRAGKLVELEVKYLREV 262
+AV+ALK AG +V L V+ R +
Sbjct: 79 KAVEALKEAGSIVRLYVRRRRPI 101
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
N+GLG SI GG +N I I+KI G AA + +L V D IL VN D+ E +H
Sbjct: 19 NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 78
Query: 86 EAVKALKRAGKVVELEV 102
+AV+ALK AG +V L V
Sbjct: 79 KAVEALKEAGSIVRLYV 95
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 225
DIP +RI+ + S GLG +I GG E I IS I G AD + +L GD I
Sbjct: 2 DIP---REPRRIVIHRGS--TGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQI 55
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
LSVNG DLR A+H++A ALK AG+ V + +Y E
Sbjct: 56 LSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 91
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG E I IS I G AD + +L GD ILSVNG DLR A+H++A A
Sbjct: 16 STGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 74
Query: 91 LKRAGKVVEL 100
LK AG+ V +
Sbjct: 75 LKNAGQTVTI 84
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 225
DIP +RI+ + S GLG +I GG E I IS I G AD + +L GD I
Sbjct: 7 DIP---REPRRIVIHRGS--TGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQI 60
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
LSVNG DLR A+H++A ALK AG+ V + +Y E
Sbjct: 61 LSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 96
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG E I IS I G AD + +L GD ILSVNG DLR A+H++A A
Sbjct: 21 STGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 79
Query: 91 LKRAGKVVEL 100
LK AG+ V +
Sbjct: 80 LKNAGQTVTI 89
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLRE 235
+IR+K EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E
Sbjct: 18 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 77
Query: 236 ATHDEAVKALK 246
THD+ V +K
Sbjct: 78 HTHDQVVLFIK 88
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHD 85
K EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E THD
Sbjct: 22 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 81
Query: 86 EAVKALK 92
+ V +K
Sbjct: 82 QVVLFIK 88
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLRE 235
+IR+K EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E
Sbjct: 20 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 79
Query: 236 ATHDEAVKALK 246
THD+ V +K
Sbjct: 80 HTHDQVVLFIK 90
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHD 85
K EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E THD
Sbjct: 24 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 83
Query: 86 EAVKALK 92
+ V +K
Sbjct: 84 QVVLFIK 90
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLRE 235
+IR+K EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E
Sbjct: 7 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 66
Query: 236 ATHDEAVKALK 246
THD+ V +K
Sbjct: 67 HTHDQVVLFIK 77
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHD 85
K EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E THD
Sbjct: 11 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 70
Query: 86 EAVKALK 92
+ V +K
Sbjct: 71 QVVLFIK 77
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
+ GLG +I GG E+ I +S I G AD + +L GD ILSVNG DLR A+H++A A
Sbjct: 13 STGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAA 71
Query: 245 LKRAGKLVELEVKYLRE 261
LK AG+ V + +Y E
Sbjct: 72 LKGAGQTVTIIAQYQPE 88
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG E+ I +S I G AD + +L GD ILSVNG DLR A+H++A A
Sbjct: 13 STGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAA 71
Query: 91 LKRAGKVVEL 100
LK AG+ V +
Sbjct: 72 LKGAGQTVTI 81
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 186 NGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
GLG+SI GG + + I+I ++++ AA + +L+ GD IL VNG DLR+ATHDEA+
Sbjct: 15 TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINV 74
Query: 245 LKRAGKLVELEVKYLREVTPY 265
L++ + V L + R+ PY
Sbjct: 75 LRQTPQRVRLTL--YRDEAPY 93
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 32 NGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
GLG+SI GG + + I+I ++++ AA + +L+ GD IL VNG DLR+ATHDEA+
Sbjct: 15 TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINV 74
Query: 91 LKRAGKVVEL 100
L++ + V L
Sbjct: 75 LRQTPQRVRL 84
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENK-MP----ILISKIFKGMAADQTEQL 65
TE +F S E + GLG SI GG N+ +P I ++KI G AA + +L
Sbjct: 15 TENLYFQSMTVV-EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRL 73
Query: 66 YVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVG 103
VGD +L VN L E TH+EAV LK +VV L+VG
Sbjct: 74 QVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG 111
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI G AA + +L VGD +L VN L E TH+EA
Sbjct: 36 GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95
Query: 242 VKALKRAGKLVELEV 256
V LK ++V L+V
Sbjct: 96 VAILKNTSEVVYLKV 110
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKV 89
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKVA 90
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKV 89
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKVA 90
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 70
TE +F S DFY+ + G G S++GG+E M + + ++ + A+++ ++ +GD
Sbjct: 15 TENLYFQSMDFYTVELERGAK-GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDE 73
Query: 71 ILSVNGEDLREATHDEAVKALKRAGKVVEL 100
IL +NGE + H A++ +K G+ V L
Sbjct: 74 ILEINGETTKNMKHSRAIELIKNGGRRVRL 103
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
G G S++GG+E M + + ++ + A+++ ++ +GD IL +NGE + H A++ +K
Sbjct: 36 GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
Query: 247 RAGKLVELEVK 257
G+ V L +K
Sbjct: 96 NGGRRVRLFLK 106
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 176 RIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAIL 226
RI+ + + N LGISI GG+ E I I ++ + A +T L GD IL
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
V+G DL+ A+H EAV+A+K AG V V+ L
Sbjct: 77 EVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSL 109
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 31 NNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
N LGISI GG+ E I I ++ + A +T L GD IL V+G DL+
Sbjct: 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQN 85
Query: 82 ATHDEAVKALKRAGKVV 98
A+H EAV+A+K AG V
Sbjct: 86 ASHSEAVEAIKNAGNPV 102
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 176 RIIRVKKSE-NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
R++ +++++ + GLG SI+GG E+ + I +S + G A++ E L VGD IL VN + L
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRVNDKSLA 68
Query: 235 EATHDEAVKALKRAGKLV 252
TH EAVKALK + KLV
Sbjct: 69 RVTHAEAVKALKGSKKLV 86
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG SI+GG E+ + I +S + G A++ E L VGD IL VN + L TH EAVKA
Sbjct: 20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRVNDKSLARVTHAEAVKA 78
Query: 91 LKRAGKVV 98
LK + K+V
Sbjct: 79 LKGSKKLV 86
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 185 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
+ GLG SI GG N+ I ++KI +G AA + +L +GD +L+VN L E TH+
Sbjct: 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHE 71
Query: 240 EAVKALKRAGKLVELEV 256
EAV ALK V L+V
Sbjct: 72 EAVTALKNTSDFVYLKV 88
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 31 NNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+ GLG SI GG N+ I ++KI +G AA + +L +GD +L+VN L E TH+
Sbjct: 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHE 71
Query: 86 EAVKALKRAGKVVELEVG 103
EAV ALK V L+V
Sbjct: 72 EAVTALKNTSDFVYLKVA 89
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKV 89
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKVA 90
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 21 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 81 VTALKNTSDFVYLKV 95
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 21 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 81 VTALKNTSDFVYLKVA 96
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 23 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 83 VTALKNTSDFVYLKV 97
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 23 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 83 VTALKNTSDFVYLKVA 98
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 11 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 70
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 71 VTALKNTSDFVYLKV 85
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 11 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 70
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 71 VTALKNTSDFVYLKVA 86
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 20 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 80 VTALKNTSDFVYLKV 94
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 20 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 80 VTALKNTSDFVYLKVA 95
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLG+SI G K N + +S I KG AD +L GD IL VNGED+R AT + LK
Sbjct: 17 GLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75
Query: 93 RAGKVVELEVG 103
+ V LEVG
Sbjct: 76 CSLGTVTLEVG 86
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
I ++K GLG+SI G K N + +S I KG AD +L GD IL VNGED+R AT
Sbjct: 8 IGLQKKPGKGLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66
Query: 238 HDEAVKALKRAGKLVELEV 256
+ LK + V LEV
Sbjct: 67 QEAVAALLKCSLGTVTLEV 85
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
+ GLG +I GGKE PI IS++ G AD+ L GD +LSVNG + H++AV+
Sbjct: 15 DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVEL 74
Query: 245 LKRAGKLVELEVK 257
LK A V+L V+
Sbjct: 75 LKAAQGSVKLVVR 87
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GGKE PI IS++ G AD+ L GD +LSVNG + H++AV+
Sbjct: 15 DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVEL 74
Query: 91 LKRAGKVVELEV 102
LK A V+L V
Sbjct: 75 LKAAQGSVKLVV 86
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
LGI+I G +E PI+IS + KG A++T +++GD IL++N L+ EA+ L+
Sbjct: 18 LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM 77
Query: 248 AGKLVELEVKYLREVTP 264
AG+ V L++K + P
Sbjct: 78 AGETVTLKIKKQTDAQP 94
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
LGI+I G +E PI+IS + KG A++T +++GD IL++N L+ EA+ L+
Sbjct: 18 LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM 77
Query: 94 AGKVVELEV 102
AG+ V L++
Sbjct: 78 AGETVTLKI 86
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I I+KI +G AA + +L +GD +L+VN +L++ H+EA
Sbjct: 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 242 VKALKRAGKLVELEV 256
V +LK +V L+V
Sbjct: 75 VASLKNTSDMVYLKV 89
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I I+KI +G AA + +L +GD +L+VN +L++ H+EA
Sbjct: 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 88 VKALKRAGKVVELEVG 103
V +LK +V L+V
Sbjct: 75 VASLKNTSDMVYLKVA 90
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKM---PILISKIFKGMAADQTEQLYV 67
TE +F S + K + LGISI GG + + PI I+ + A QT++L V
Sbjct: 15 TENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74
Query: 68 GDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVG 105
GD I+++ G TH +AV LK A +E++V G
Sbjct: 75 GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKM---PILISKIFKGMAADQTEQLYVGDAILSVNGED 232
R + +KK + LGISI GG + + PI I+ + A QT++L VGD I+++ G
Sbjct: 26 RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85
Query: 233 LREATHDEAVKALKRAGKLVELEV 256
TH +AV LK A +E++V
Sbjct: 86 TEGMTHTQAVNLLKNASGSIEMQV 109
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 10 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
Query: 242 VKALKRAGKLVELE 255
V ALK V L+
Sbjct: 70 VTALKNTSDFVYLK 83
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 10 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
Query: 88 VKALKRAGKVVELE 101
V ALK V L+
Sbjct: 70 VTALKNTSDFVYLK 83
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGD 223
S + + + + +SE GLG SI GGK I +S+I +G AA + L VGD
Sbjct: 3 SGSSGRHVACLARSER-GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVEL 254
+LS+NG D+ EA HD AV L A + L
Sbjct: 62 RVLSINGVDVTEARHDHAVSLLTAASPTIAL 92
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 33 GLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
GLG SI GGK I +S+I +G AA + L VGD +LS+NG D+ EA HD
Sbjct: 19 GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDH 78
Query: 87 AVKALKRAGKVVEL 100
AV L A + L
Sbjct: 79 AVSLLTAASPTIAL 92
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++ I +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 242 VKALKRAGKLVELEV 256
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKV 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++ I +G AA + +L +GD +L+VN L E TH+EA
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 88 VKALKRAGKVVELEVG 103
V ALK V L+V
Sbjct: 75 VTALKNTSDFVYLKVA 90
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
++ + K E LG+++ GG + +S + +G A +++QL VGD I +VNG +L +
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69
Query: 237 THDEAVKALKRAGKLVELEVKY 258
HDE + LK G+ V LEV+Y
Sbjct: 70 RHDEIISLLKNVGERVVLEVEY 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E LG+++ GG + +S + +G A +++QL VGD I +VNG +L + HDE +
Sbjct: 17 EGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIIS 76
Query: 90 ALKRAGKVVELEV 102
LK G+ V LEV
Sbjct: 77 LLKNVGERVVLEV 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 184 ENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
E N G I+GG + P++I+ + G AD+ + GD +LSV+G L TH
Sbjct: 115 EGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 174
Query: 240 EAVKALKRAGKLVELEVKY 258
EA+ LK+ G+ L ++Y
Sbjct: 175 EAMSILKQCGQEATLLIEY 193
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 28 YTENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
+ E N G I+GG + P++I+ + G AD+ + GD +LSV+G L T
Sbjct: 113 HKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172
Query: 84 HDEAVKALKRAGK 96
H EA+ LK+ G+
Sbjct: 173 HAEAMSILKQCGQ 185
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 26 YKYTE------NNGLGISIKGGKEN-KMP----ILISKIFKGMAADQTEQLYVGDAILSV 74
+KY E N+GLG SI GG +N +P I I+KI G AA +L V D +L V
Sbjct: 3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 75 NGEDLREATHDEAVKALKRAG 95
N D+ E H AV+ALK AG
Sbjct: 63 NEVDVSEVVHSRAVEALKEAG 83
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 185 NNGLGISIKGGKEN-KMP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
N+GLG SI GG +N +P I I+KI G AA +L V D +L VN D+ E H
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 240 EAVKALKRAG 249
AV+ALK AG
Sbjct: 74 RAVEALKEAG 83
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
G G SI+GG+E KM + + ++ + A + ++ VGD I+ +NGE R+ TH A++ +
Sbjct: 22 KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81
Query: 246 KRAGKLVELEVK 257
K G+ V L +K
Sbjct: 82 KSGGRRVRLLLK 93
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
G G SI+GG+E KM + + ++ + A + ++ VGD I+ +NGE R+ TH A++ +
Sbjct: 22 KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81
Query: 92 KRAGKVVELEVGVGYG 107
K G+ V L + G G
Sbjct: 82 KSGGRRVRLLLKRGTG 97
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 33 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 74
Query: 88 VKALKRAGKVVELEVG 103
V ALK VV L+V
Sbjct: 75 VAALKNTYDVVYLKVA 90
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 187 GLGISIKGGKENK-MP----ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG SI GG N+ +P I ++KI +G AA + +L +GD IL+VN L + H++A
Sbjct: 15 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 74
Query: 242 VKALKRAGKLVELEV 256
V ALK +V L+V
Sbjct: 75 VAALKNTYDVVYLKV 89
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGG---KENKMPILISKIFKGMAADQTEQLYV 67
TE +F S +GLG SI GG +PI + +F AA + +L
Sbjct: 15 TENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74
Query: 68 GDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
GD I++VNG+ L TH+EAV LKR V L V
Sbjct: 75 GDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 186 NGLGISIKGG---KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
+GLG SI GG +PI + +F AA + +L GD I++VNG+ L TH+EAV
Sbjct: 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAV 95
Query: 243 KALKRAGKLVELEV 256
LKR V L V
Sbjct: 96 AILKRTKGTVTLMV 109
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 174 QKRIIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
+ II V + NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 231 EDLREATHDEAVKALKRAGKLVELEV 256
L + + A + + R +V LEV
Sbjct: 63 RSLVGLSQERAAELMTRTSSVVTLEV 88
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 30 ENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G L + +
Sbjct: 13 KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 72
Query: 87 AVKALKRAGKVVELEVG 103
A + + R VV LEV
Sbjct: 73 AAELMTRTSSVVTLEVA 89
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 174 QKRIIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
+ II V + NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 231 EDLREATHDEAVKALKRAGKLVELEV 256
L + + A + + R +V LEV
Sbjct: 63 RSLVGLSQERAAELMTRTSSVVTLEV 88
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 30 ENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G L + +
Sbjct: 13 KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 72
Query: 87 AVKALKRAGKVVELEVG 103
A + + R VV LEV
Sbjct: 73 AAELMTRTSSVVTLEVA 89
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 170 SVENQKRIIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
S+ + II V + NG+G+SI KG ++K+ I + + KG AAD +L GD +L
Sbjct: 5 SLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEV 256
SV+G L + + A + + R +V LEV
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 30 ENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G L + +
Sbjct: 19 KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 78
Query: 87 AVKALKRAGKVVELEV 102
A + + R VV LEV
Sbjct: 79 AAELMTRTSSVVTLEV 94
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+RV+KS LG S++GG E+ + I +SK+ +G +A++ L VGD I VNG L T
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTT 72
Query: 238 HDEAVKALKRAGKL 251
AVK L + +L
Sbjct: 73 MGSAVKVLTSSSRL 86
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
LG S++GG E+ + I +SK+ +G +A++ L VGD I VNG L T AVK L
Sbjct: 24 LGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVL 80
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 177 IIRVKKSENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
II V + NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G L
Sbjct: 12 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 234 REATHDEAVKALKRAGKLVELEV 256
+ + A + + R +V LEV
Sbjct: 72 VGLSQERAAELMTRTSSVVTLEV 94
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 30 ENNGLGISI---KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ NG+G+SI KG ++K+ I + + KG AAD +L GD +LSV+G L + +
Sbjct: 19 KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 78
Query: 87 AVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWY 121
A + + R VV LEV + +R +WY
Sbjct: 79 AAELMTRTSSVVTLEV--------AKQGAIRREWY 105
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+R+ + GLG+S++GG E + IS + KG AD L VGD I+ +NG + T
Sbjct: 88 VRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCT 146
Query: 238 HDEAVKALKRAGKLVELEVKYL 259
H+E + L R K V ++V+++
Sbjct: 147 HEEVIN-LIRTEKTVSIKVRHI 167
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLG+S++GG E + IS + KG AD L VGD I+ +NG + TH+E + L
Sbjct: 97 GLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVIN-LI 154
Query: 93 RAGKVVELEV 102
R K V ++V
Sbjct: 155 RTEKTVSIKV 164
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 187 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG +I GG + N I +S+I + AA +L GD ILSVNG+DL+ H +A
Sbjct: 29 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 242 VKALKRAGKLVELEVKYLREV 262
V + AG V L V++ +V
Sbjct: 89 VDLFRNAGYAVSLRVQHRLQV 109
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 33 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG +I GG + N I +S+I + AA +L GD ILSVNG+DL+ H +A
Sbjct: 29 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 88 VKALKRAGKVVELEV 102
V + AG V L V
Sbjct: 89 VDLFRNAGYAVSLRV 103
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 187 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG +I GG + N I +S+I + AA +L GD ILSVNG+DL+ H +A
Sbjct: 21 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
Query: 242 VKALKRAGKLVELEVKY 258
V + AG V L V++
Sbjct: 81 VDLFRNAGYAVSLRVQH 97
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 33 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG +I GG + N I +S+I + AA +L GD ILSVNG+DL+ H +A
Sbjct: 21 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
Query: 88 VKALKRAGKVVELEV 102
V + AG V L V
Sbjct: 81 VDLFRNAGYAVSLRV 95
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 187 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
GLG +I GG + N I +S+I + AA +L GD ILSVNG+DL+ H +A
Sbjct: 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
Query: 242 VKALKRAGKLVELEVKY 258
V + AG V L V++
Sbjct: 79 VDLFRNAGYAVSLRVQH 95
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 33 GLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG +I GG + N I +S+I + AA +L GD ILSVNG+DL+ H +A
Sbjct: 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
Query: 88 VKALKRAGKVVELEV 102
V + AG V L V
Sbjct: 79 VDLFRNAGYAVSLRV 93
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 31 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
+N LGIS+ GG + I + + AA+ +++ GD +L+VNG L ATH +A
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 88 VKALKRAGKVVEL 100
V+ L+ G+VV L
Sbjct: 75 VETLRNTGQVVHL 87
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 177 IIRVKKSEN-NGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGED 232
I V+ ++N N LGIS+ GG + I + + AA+ +++ GD +L+VNG
Sbjct: 6 IFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 233 LREATHDEAVKALKRAGKLVEL 254
L ATH +AV+ L+ G++V L
Sbjct: 66 LEGATHKQAVETLRNTGQVVHL 87
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 31 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
+N LGIS+ GG + I + + AA+ +++ GD +L+VNG L ATH +A
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 88 VKALKRAGKVVEL 100
V+ L+ G+VV L
Sbjct: 75 VETLRNTGQVVHL 87
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 177 IIRVKKSEN-NGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGED 232
I V+ ++N N LGIS+ GG + I + + AA+ +++ GD +L+VNG
Sbjct: 6 IFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 233 LREATHDEAVKALKRAGKLVEL 254
L ATH +AV+ L+ G++V L
Sbjct: 66 LEGATHKQAVETLRNTGQVVHL 87
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 174 QKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDA 224
Q R + + + + LGISI GG+ E I I + + A + L GD
Sbjct: 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
I+ V+G DLR+A+H++AV+A+++AG V V+ +
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGK---------ENKMPILISKIFKGMAADQ 61
TE +F S + LGISI GG+ E I I + + A +
Sbjct: 15 TENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGK 74
Query: 62 TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
L GD I+ V+G DLR+A+H++AV+A+++AG V V
Sbjct: 75 NGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
RI+ +KK LG +I+GGK +++ I ISK+ A + L GD +L+VN D ++
Sbjct: 17 RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQD 75
Query: 236 ATHDEAVKALKRAGKLVELEVKYL 259
H +AV+ LK A + + + V++
Sbjct: 76 IEHSKAVEILKTA-REISMRVRFF 98
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
LG +I+GGK +++ I ISK+ A + L GD +L+VN D ++ H +AV+ LK
Sbjct: 29 LGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVEILKT 87
Query: 94 AGKV 97
A ++
Sbjct: 88 AREI 91
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 174 QKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDA 224
Q R + + + + LGISI GG+ E I I + + A + L GD
Sbjct: 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
I+ V+G DLR+A+H++AV+A+++AG V V+ +
Sbjct: 64 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 34 LGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
LGISI GG+ E I I + + A + L GD I+ V+G DLR+A+H
Sbjct: 18 LGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 77
Query: 85 DEAVKALKRAGKVV 98
++AV+A+++AG V
Sbjct: 78 EQAVEAIRKAGNPV 91
>pdb|2ADZ|A Chain A, Solution Structure Of The Joined Ph Domain Of Alpha1-
Syntrophin
Length = 178
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 260 REVTPYFRKASIISEVGWELQRG-FLSDXXXXXXXXXXXRADTRYLPLQLCYLVRNYKHY 318
REV+PYF+ ++ + VGW+ L ++ +++ L++ Y+ R
Sbjct: 78 REVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPT 137
Query: 319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357
D E R LE+ + DG + LRA D + A W + + +
Sbjct: 138 DPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 174 QKRIIRVKKSENNGLGISI-------KGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
Q + + + EN G G I + G +P I +I G AD+ +L VGD IL
Sbjct: 10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRIL 69
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEV 256
+VNG+ + H + VK +K AG V L +
Sbjct: 70 AVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 30 ENNGLGISI-------KGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
EN G G I + G +P I +I G AD+ +L VGD IL+VNG+ +
Sbjct: 20 ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM 79
Query: 83 THDEAVKALKRAGKVVELEV 102
H + VK +K AG V L +
Sbjct: 80 PHADIVKLIKDAGLSVTLRI 99
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPI-LISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
++RVKKS LGI+I+GG + P+ I I +G +A QL VG IL VNG LR
Sbjct: 9 LVRVKKSAAT-LGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 236 ATHDEAVKALKRAGK 250
H EA + + A K
Sbjct: 68 KEHREAARIIAEAFK 82
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 34 LGISIKGGKENKMPI-LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
LGI+I+GG + P+ I I +G +A QL VG IL VNG LR H EA + +
Sbjct: 19 LGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78
Query: 93 RAGK 96
A K
Sbjct: 79 EAFK 82
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 178 IRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
+ ++K G GI++ GG++N + I+IS + G AD L D ++ VNG
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGL--LQENDRVVMVNGT 75
Query: 232 DLREATHDEAVKALKRAGKLVELEVKYLREV 262
+ + H AV+ L+++GK+ + VK R+V
Sbjct: 76 PMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 22 YSENYKYTENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVN 75
Y+ + G GI++ GG++N + I+IS + G AD L D ++ VN
Sbjct: 16 YTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGL--LQENDRVVMVN 73
Query: 76 GEDLREATHDEAVKALKRAGKVVELEV 102
G + + H AV+ L+++GK+ + V
Sbjct: 74 GTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMP-------ILISKIFKGMAADQTEQLY 220
P +E ++ + + + + GLGISI GGK P I IS++ + A + +
Sbjct: 9 PARIEEEELTLTILR-QTGGLGISIAGGK-GSTPYKGDDEGIFISRVSEEGPAARA-GVR 65
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
VGD +L VNG L+ A H EAV+AL+ AG V++ V
Sbjct: 66 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 30 ENNGLGISIKGGKENKMP-------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
+ GLGISI GGK P I IS++ + A + + VGD +L VNG L+ A
Sbjct: 24 QTGGLGISIAGGK-GSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGA 81
Query: 83 THDEAVKALKRAGKVVELEV 102
H EAV+AL+ AG V++ V
Sbjct: 82 EHHEAVEALRGAGTAVQMRV 101
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 31 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
+ LGIS+ GG + I + I AA+ +++ GD +L+VNG L ATH +A
Sbjct: 22 DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 81
Query: 88 VKALKRAGKVVEL 100
V+ L+ G+VV L
Sbjct: 82 VETLRNTGQVVHL 94
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
+ LGIS+ GG + I + I AA+ +++ GD +L+VNG L ATH +A
Sbjct: 22 DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 81
Query: 242 VKALKRAGKLVEL 254
V+ L+ G++V L
Sbjct: 82 VETLRNTGQVVHL 94
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 31 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
+ LGIS+ GG + I + I AA+ +++ GD +L+VNG L ATH +A
Sbjct: 14 DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 73
Query: 88 VKALKRAGKVVEL 100
V+ L+ G+VV L
Sbjct: 74 VETLRNTGQVVHL 86
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 NNGLGISIKGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
+ LGIS+ GG + I + I AA+ +++ GD +L+VNG L ATH +A
Sbjct: 14 DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 73
Query: 242 VKALKRAGKLVEL 254
V+ L+ G++V L
Sbjct: 74 VETLRNTGQVVHL 86
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 184 ENNGLGISIKGGKENKMP-------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
+ GLGISI GGK P I IS++ + A + + VGD +L VNG L+ A
Sbjct: 12 QTGGLGISIAGGK-GSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGA 69
Query: 237 THDEAVKALKRAGKLVELEVKYLREVT 263
H EAV+AL+ AG V++ V RE +
Sbjct: 70 EHHEAVEALRGAGTAVQMRVWRERETS 96
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 30 ENNGLGISIKGGKENKMP-------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
+ GLGISI GGK P I IS++ + A + + VGD +L VNG L+ A
Sbjct: 12 QTGGLGISIAGGK-GSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGA 69
Query: 83 THDEAVKALKRAGKVVELEV 102
H EAV+AL+ AG V++ V
Sbjct: 70 EHHEAVEALRGAGTAVQMRV 89
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
LG++I+GG E + I I+ + G A+ + L VGD IL VNG HDEAV+ LK
Sbjct: 34 LGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 248 AGKLVELEVKYLREVTPYFRKASIISEVGW 277
+ L+ L VK + + P+ R + + E W
Sbjct: 93 SRHLI-LTVKDVGRL-PHAR--TTVDETKW 118
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 25 NYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
N + LG++I+GG E + I I+ + G A+ + L VGD IL VNG H
Sbjct: 25 NLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILH 83
Query: 85 DEAVKALK 92
DEAV+ LK
Sbjct: 84 DEAVRLLK 91
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 180 VKKSENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ K E GLG S+ GG ENK+ I + ++F A Q + G+ +LS+NG+ L+ T
Sbjct: 21 LHKEEGAGLGFSLAGGADLENKV-ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT 79
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
H +A+ L++A + V R++TP
Sbjct: 80 HHDALAILRQA-REPRQAVIVTRKLTP 105
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 30 ENNGLGISIKGGK--ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
E GLG S+ GG ENK+ I + ++F A Q + G+ +LS+NG+ L+ TH +A
Sbjct: 25 EGAGLGFSLAGGADLENKV-ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDA 83
Query: 88 VKALKRA 94
+ L++A
Sbjct: 84 LAILRQA 90
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 184 ENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
E N G I+GG + P++I+ + G AD+ + GD +LSV+G L TH
Sbjct: 12 EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 71
Query: 240 EAVKALKRAGKLVELEVKY 258
EA+ LK+ G+ L ++Y
Sbjct: 72 EAMSILKQCGQEAALLIEY 90
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 28 YTENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
+ E N G I+GG + P++I+ + G AD+ + GD +LSV+G L T
Sbjct: 10 HKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 69
Query: 84 HDEAVKALKRAGK 96
H EA+ LK+ G+
Sbjct: 70 HAEAMSILKQCGQ 82
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
D + + R + + + + GLG +I GG E+ I IS I G AD + +L GD I+SV
Sbjct: 2 DEITREPRKVVLHRG-STGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISV 59
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
N DLR A+H++A ALK AG+ V + +Y E
Sbjct: 60 NSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE 92
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG E+ I IS I G AD + +L GD I+SVN DLR A+H++A A
Sbjct: 17 STGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAA 75
Query: 91 LKRAGKVVEL 100
LK AG+ V +
Sbjct: 76 LKNAGQAVTI 85
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+R+ K + GLG +K + +K P++IS + +G AA+Q+ + GD IL+VN L + +
Sbjct: 12 VRLFKRKVGGLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 70
Query: 238 HDEAVKALK 246
+D A++ L+
Sbjct: 71 YDSALEVLR 79
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLG +K + +K P++IS + +G AA+Q+ + GD IL+VN L + ++D A++ L+
Sbjct: 21 GLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 79
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+R+ K + GLG +K + +K P++IS + +G AA+Q+ + GD IL+VN L + +
Sbjct: 7 VRLFKRKVGGLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 65
Query: 238 HDEAVKALK 246
+D A++ L+
Sbjct: 66 YDSALEVLR 74
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLG +K + +K P++IS + +G AA+Q+ + GD IL+VN L + ++D A++ L+
Sbjct: 16 GLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 74
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+R+ K + GLG +K + +K P++IS + +G AA+Q+ + GD IL+VN L + +
Sbjct: 5 VRLFKRKVGGLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63
Query: 238 HDEAVKALK 246
+D A++ L+
Sbjct: 64 YDSALEVLR 72
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
GLG +K + +K P++IS + +G AA+Q+ + GD IL+VN L + ++D A++ L+
Sbjct: 14 GLGFLVKE-RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 72
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 28 YTENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 79
+ ++ LG +I GG+ + I +SKI A + L + D I+ VNG DL
Sbjct: 15 HRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
Query: 80 REATHDEAVKALKRAGKVVELEV 102
ATHD+AV+A K A + + ++V
Sbjct: 75 SRATHDQAVEAFKTAKEPIVVQV 97
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 184 ENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
++ LG +I GG+ + I +SKI A + L + D I+ VNG DL
Sbjct: 17 DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76
Query: 236 ATHDEAVKALKRAGKLVELEV 256
ATHD+AV+A K A + + ++V
Sbjct: 77 ATHDQAVEAFKTAKEPIVVQV 97
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 31 NNGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
+N LGIS+ KGG + I + + AA+ +++ GD +L+VNG L A
Sbjct: 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78
Query: 83 THDEAVKALKRAGKVVEL 100
TH +AV+ L+ G+VV L
Sbjct: 79 THKQAVETLRNTGQVVHL 96
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 177 IIRVKKSEN-NGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILS 227
I V+ ++N N LGIS+ KGG + I + + AA+ +++ GD +L+
Sbjct: 10 IFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 69
Query: 228 VNGEDLREATHDEAVKALKRAGKLVEL 254
VNG L ATH +AV+ L+ G++V L
Sbjct: 70 VNGVSLEGATHKQAVETLRNTGQVVHL 96
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 33 GLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
GLG S++GGK P+ I++IFKG A++Q+E + GD IL + G ++ T EA
Sbjct: 41 GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWN 100
Query: 90 ALK 92
+K
Sbjct: 101 IIK 103
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 187 GLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
GLG S++GGK P+ I++IFKG A++Q+E + GD IL + G ++ T EA
Sbjct: 41 GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWN 100
Query: 244 ALK 246
+K
Sbjct: 101 IIK 103
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 33 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
GLG+S+KG KEN + I + I G AA + +L V D +++VNGE L + EA+
Sbjct: 22 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 81
Query: 89 KALKRA 94
+ L+R+
Sbjct: 82 ETLRRS 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 187 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
GLG+S+KG KEN + I + I G AA + +L V D +++VNGE L + EA+
Sbjct: 22 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 81
Query: 243 KALKRA 248
+ L+R+
Sbjct: 82 ETLRRS 87
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
P + EN+++ + + + GLG SI G K I IS + G + + L +GD I+
Sbjct: 9 PGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVE 67
Query: 228 VNGEDLREATHDEAVKALKRAGKL 251
VNG D H EAV LK + L
Sbjct: 68 VNGVDFSNLDHKEAVNVLKSSRSL 91
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG SI G K I IS + G + + L +GD I+ VNG D H EAV
Sbjct: 26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNV 84
Query: 91 LKRA 94
LK +
Sbjct: 85 LKSS 88
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 33 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
GLG+S+KG KEN + I + I G AA + +L V D +++VNGE L + EA+
Sbjct: 19 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 78
Query: 89 KALKRA 94
+ L+R+
Sbjct: 79 ETLRRS 84
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 187 GLGISIKGG--KENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
GLG+S+KG KEN + I + I G AA + +L V D +++VNGE L + EA+
Sbjct: 19 GLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAM 78
Query: 243 KALKRA 248
+ L+R+
Sbjct: 79 ETLRRS 84
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG +I GG++ + I IS I G AD + +L GD I+SVN DLR A+H++A A
Sbjct: 14 STGLGFNIVGGEDGE-GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAA 72
Query: 91 LKRAGKVVEL 100
LK AG+ V +
Sbjct: 73 LKNAGQAVTI 82
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
+ GLG +I GG++ + I IS I G AD + +L GD I+SVN DLR A+H++A A
Sbjct: 14 STGLGFNIVGGEDGE-GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAA 72
Query: 245 LKRAGKLVEL 254
LK AG+ V +
Sbjct: 73 LKNAGQAVTI 82
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVNG 230
++++ ++K LG+++ GG ++ +PI + + G + ++ GD +L+V+G
Sbjct: 24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83
Query: 231 EDLREATHDEAVKALKRAGKLVELEVKYLRE 261
+L E + EAV LKR + L+ ++E
Sbjct: 84 VELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYV 67
TE +F S N + LG+++ GG ++ +PI + + G + ++
Sbjct: 15 TENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKT 74
Query: 68 GDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101
GD +L+V+G +L E + EAV LKR + L+
Sbjct: 75 GDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK 108
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 31 NNGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
+ LGIS+ KGG + I + I AA+ +++ GD +L+VNG L A
Sbjct: 14 DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73
Query: 83 THDEAVKALKRAGKVVEL 100
TH +AV+ L+ G+VV L
Sbjct: 74 THKQAVETLRNTGQVVHL 91
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 185 NNGLGISI-----KGGKENKMP---ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
+ LGIS+ KGG + I + I AA+ +++ GD +L+VNG L A
Sbjct: 14 DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73
Query: 237 THDEAVKALKRAGKLVEL 254
TH +AV+ L+ G++V L
Sbjct: 74 THKQAVETLRNTGQVVHL 91
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 59/229 (25%)
Query: 33 GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G GI ++G + P LIS I A++ L +GD ++++NG ++T +EA
Sbjct: 19 GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 78
Query: 89 KALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNG 148
+ L+ + + +TL+ +D
Sbjct: 79 QLLRDSSITSK----------------------------------VTLEIEFD------- 97
Query: 149 TLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIF 208
+ + + S +F V +P K S G+ IS ++ P++IS I
Sbjct: 98 -VAESVIPSSGTFH--VKLPK-----------KHSVELGITISSPSSRKPGDPLVISDIK 143
Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
KG A +T L +GD +L+++ L + ++AV+ L++ LV+L+++
Sbjct: 144 KGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIR 192
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 187 GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
G GI ++G + P LIS I A++ L +GD ++++NG ++T +EA
Sbjct: 19 GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 78
Query: 243 KALKRAG--KLVELEVKY 258
+ L+ + V LE+++
Sbjct: 79 QLLRDSSITSKVTLEIEF 96
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 187 GLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
G G+++ GG++ P+ + + K A + +L VGD +L +NGE + TH +AV+
Sbjct: 23 GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVER 82
Query: 245 LKRAGKLVELEVK 257
++ G + L ++
Sbjct: 83 IRAGGPQLHLVIR 95
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 33 GLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
G G+++ GG++ P+ + + K A + +L VGD +L +NGE + TH +AV+
Sbjct: 23 GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVER 82
Query: 91 LKRAGKVVELEV 102
++ G + L +
Sbjct: 83 IRAGGPQLHLVI 94
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMP------ILISKIFKGMAADQTEQLYVGDAILSVNG 230
++ + K+ GI I G+ P I I I A +L VGD ILS+NG
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 231 EDLREATHDEAVKALKRAGKLVELEVK 257
+D+R +T + +K A +ELE++
Sbjct: 68 KDVRNSTEQAVIDLIKEADFKIELEIQ 94
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 29 TENNGLGISIKGGKENKMP------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
T GI I G+ P I I I A +L VGD ILS+NG+D+R +
Sbjct: 14 TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNS 73
Query: 83 THDEAVKALKRAGKVVELEV 102
T + +K A +ELE+
Sbjct: 74 TEQAVIDLIKEADFKIELEI 93
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 178 IRVKKSENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
I + S + GLG+S+KG K + + I I I G AA + +L + D +++VNGE L
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88
Query: 234 REATHDEAVKALKRA 248
++ EA++ L+R+
Sbjct: 89 LGKSNHEAMETLRRS 103
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 33 GLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
GLG+S+KG K + + I I I G AA + +L + D +++VNGE L ++ EA+
Sbjct: 38 GLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97
Query: 89 KALKRA 94
+ L+R+
Sbjct: 98 ETLRRS 103
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G ++GGK+ MP+ IS+I G A Q+ QL GD +++++G + TH EA +K A
Sbjct: 21 GFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 79
Query: 249 GKLVELEVK 257
+ L ++
Sbjct: 80 SYNLSLTLQ 88
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G ++GGK+ MP+ IS+I G A Q+ QL GD +++++G + TH EA +K A
Sbjct: 21 GFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 79
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILS 227
++ + + ++ G GI+I GG++N + I+IS + KG A+ QL D +
Sbjct: 10 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAM 67
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVK 257
VNG + H AV+ L+++GK ++ ++
Sbjct: 68 VNGVSMDNVEHAFAVQQLRKSGKNAKITIR 97
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 33 GLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
G GI+I GG++N + I+IS + KG A+ QL D + VNG + H
Sbjct: 23 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAMVNGVSMDNVEHAF 80
Query: 87 AVKALKRAGKVVELEV 102
AV+ L+++GK ++ +
Sbjct: 81 AVQQLRKSGKNAKITI 96
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILS 227
++ + + ++ G GI+I GG++N + I+IS + KG A+ QL D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAM 64
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVK 257
VNG + H AV+ L+++GK ++ ++
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 33 GLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
G GI+I GG++N + I+IS + KG A+ QL D + VNG + H
Sbjct: 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAMVNGVSMDNVEHAF 77
Query: 87 AVKALKRAGKVVELEV 102
AV+ L+++GK ++ +
Sbjct: 78 AVQQLRKSGKNAKITI 93
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G ++GGK+ MP+ IS+I G A Q+ QL GD +++++G + TH EA +K A
Sbjct: 14 GFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 249 GKLVELEVK 257
+ L ++
Sbjct: 73 SYNLSLTLQ 81
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G ++GGK+ MP+ IS+I G A Q+ QL GD +++++G + TH EA +K A
Sbjct: 14 GFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R+I+ +K +GI++K K +++I G + L+VGD IL +NG ++
Sbjct: 14 RLIQFEKVTEEPMGITLK--LNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+ D+ KA+K ++ L+V
Sbjct: 72 HSVDQLQKAMKETKGMISLKV 92
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
+GI++K K +++I G + L+VGD IL +NG ++ + D+ KA+K
Sbjct: 26 MGITLK--LNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
Query: 94 AGKVVELEV 102
++ L+V
Sbjct: 84 TKGMISLKV 92
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILS 227
++ + + ++ G GI+I GG++N + I+IS + KG A+ QL D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAM 64
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVK 257
VNG + H AV+ L+++GK ++ ++
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 33 GLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
G GI+I GG++N + I+IS + KG A+ QL D + VNG + H
Sbjct: 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAMVNGVSMDNVEHAF 77
Query: 87 AVKALKRAGKVVELEV 102
AV+ L+++GK ++ +
Sbjct: 78 AVQQLRKSGKNAKITI 93
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 33 GLGISIKG--GKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
GLGI+I G G + P I + I K A + ++ +GD I++V+G +L+ T+ +AV
Sbjct: 16 GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAV 75
Query: 89 KALKRAGKVVEL 100
+ L+ G+ V L
Sbjct: 76 EVLRHTGQTVLL 87
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 187 GLGISIKG--GKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
GLGI+I G G + P I + I K A + ++ +GD I++V+G +L+ T+ +AV
Sbjct: 16 GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAV 75
Query: 243 KALKRAGKLVEL 254
+ L+ G+ V L
Sbjct: 76 EVLRHTGQTVLL 87
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQ-------- 218
+V + I ++++ EN LG SI GG + ++ P K KG+ + +
Sbjct: 3 AVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 62
Query: 219 LYVGDAILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
L +GD I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 63 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 101
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 30 ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQ--------LYVGDAILSVNGED 78
EN LG SI GG + ++ P K KG+ + + L +GD I+ VNG D
Sbjct: 17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD 76
Query: 79 LREATHDEAVKAL-KRAGKVVELEV 102
+ THD+A K L KR+ +VV L V
Sbjct: 77 MTMVTHDQARKRLTKRSEEVVRLLV 101
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQ-------- 218
+V + I ++++ EN LG SI GG + ++ P K KG+ + +
Sbjct: 12 AVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 71
Query: 219 LYVGDAILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
L +GD I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 72 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 110
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 30 ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQ--------LYVGDAILSVNGED 78
EN LG SI GG + ++ P K KG+ + + L +GD I+ VNG D
Sbjct: 26 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD 85
Query: 79 LREATHDEAVKAL-KRAGKVVELEV 102
+ THD+A K L KR+ +VV L V
Sbjct: 86 MTMVTHDQARKRLTKRSEEVVRLLV 110
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQ-------- 218
+V + I ++++ EN LG SI GG + ++ P K KG+ + +
Sbjct: 1 AVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 60
Query: 219 LYVGDAILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
L +GD I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 61 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 99
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 30 ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQ--------LYVGDAILSVNGED 78
EN LG SI GG + ++ P K KG+ + + L +GD I+ VNG D
Sbjct: 15 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD 74
Query: 79 LREATHDEAVKAL-KRAGKVVELEV 102
+ THD+A K L KR+ +VV L V
Sbjct: 75 MTMVTHDQARKRLTKRSEEVVRLLV 99
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILS 227
++ + + ++ G GI+I GG++N + I+IS + KG A+ QL D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAM 64
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVK 257
VNG + H AV+ L+++GK ++ ++
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 33 GLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
G GI+I GG++N + I+IS + KG A+ QL D + VNG + H
Sbjct: 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAMVNGVSMDNVEHAF 77
Query: 87 AVKALKRAGKVVELEV 102
AV+ L+++GK ++ +
Sbjct: 78 AVQQLRKSGKNAKITI 93
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G ++GGK+ +P+ IS++ G A Q + VGD +LS++GE+ TH EA ++
Sbjct: 16 GFRLQGGKDFNVPLSISRLTPGGKAAQA-GVAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74
Query: 249 GKLVEL 254
G+ + L
Sbjct: 75 GERLSL 80
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G ++GGK+ +P+ IS++ G A Q + VGD +LS++GE+ TH EA ++
Sbjct: 16 GFRLQGGKDFNVPLSISRLTPGGKAAQA-GVAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74
Query: 95 GKVVEL 100
G+ + L
Sbjct: 75 GERLSL 80
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 11 TEAFFFSSRDFYSENYKYT--ENNGLGISIKGG----------KENKMP--ILISKIFKG 56
TE +F S E +K EN LG SI GG E+K I ++++ +G
Sbjct: 15 TENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEG 74
Query: 57 MAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL-KRAGKVVELEV 102
A+ L +GD I+ VNG D+ THD+A K L KR+ +VV L V
Sbjct: 75 GPAE-IAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 14/93 (15%)
Query: 177 IIRVKKSENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDA 224
I ++++ EN LG SI GG E+K I ++++ +G A+ L +GD
Sbjct: 29 IHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDK 87
Query: 225 ILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 88 IMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R+I+ +K +GI +K K +++I G + L+VGD IL +NG ++
Sbjct: 14 RLIQFEKVTEEPMGICLK--LNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+ D+ KA+K ++ L+V
Sbjct: 72 HSVDQLQKAMKETKGMISLKV 92
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
+GI +K K +++I G + L+VGD IL +NG ++ + D+ KA+K
Sbjct: 26 MGICLK--LNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
Query: 94 AGKVVELEV 102
++ L+V
Sbjct: 84 TKGMISLKV 92
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+I+R++K+ + LG +++ N+M ++IS+I KG AA+++ L+ GD +L +NG ++R
Sbjct: 27 KIVRIEKARDIPLGATVR----NEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 44 NKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
N+M ++IS+I KG AA+++ L+ GD +L +NG ++R
Sbjct: 45 NEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 169 DSVENQ--KRIIRVKKSENNGLGISIKGGK-ENKMPILISKIFKGMAADQTEQLYVGDAI 225
D+V N ++ + K+ + LGIS+ NK I I +I D++ L+ GD I
Sbjct: 8 DTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHI 67
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
LS++G + + EA K L + V LE+ + + R +S
Sbjct: 68 LSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 29 TENNGLGISIKGGK-ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
T + LGIS+ NK I I +I D++ L+ GD ILS++G + + EA
Sbjct: 24 TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEA 83
Query: 88 VKALKRAGKVVELEV 102
K L + V LE+
Sbjct: 84 TKLLASISEKVRLEI 98
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
+ GLG SI G K I IS + G + + L +GD I+ VNG D H EAV
Sbjct: 12 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNV 70
Query: 245 LKRAGKL 251
LK + L
Sbjct: 71 LKSSRSL 77
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ GLG SI G K I IS + G + + L +GD I+ VNG D H EAV
Sbjct: 12 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNV 70
Query: 91 LKRA 94
LK +
Sbjct: 71 LKSS 74
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+ + + G G I GG E PI I I AAD +L GD ++SV+G + +H
Sbjct: 7 FLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQ 66
Query: 86 EAVKALKRAGK 96
V+ +++A K
Sbjct: 67 LVVQLMQQAAK 77
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
+ G G I GG E PI I I AAD +L GD ++SV+G + +H V+
Sbjct: 11 KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQ 70
Query: 244 ALKRAGKL--VELEVKYLR 260
+++A K V L V+ R
Sbjct: 71 LMQQAAKQGHVNLTVRQTR 89
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
R++R+KK L ++++GG ++ + +++S +++G AA++ + GD I+++NG+ +
Sbjct: 20 RLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT 77
Query: 235 EATHDEAVKALKRA 248
+ T EA AL++A
Sbjct: 78 DYTLAEAEAALQKA 91
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 34 LGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
L ++++GG ++ + +++S +++G AA++ + GD I+++NG+ + + T EA AL+
Sbjct: 30 LDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89
Query: 93 RA----GKVVELEVGV 104
+A G ++L V V
Sbjct: 90 KAWNQGGDWIDLVVAV 105
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 183 SENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
++ +GLG I GGK + +++ I G AD+ +L GD IL + G +++ T ++
Sbjct: 23 NDGSGLGFGIVGGKTSG--VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVA 80
Query: 243 KALKRAGKLVELEV 256
+ L+ G V + V
Sbjct: 81 QVLRNCGNSVRMLV 94
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ +GLG I GGK + +++ I G AD+ +L GD IL + G +++ T ++ +
Sbjct: 24 DGSGLGFGIVGGKTSG--VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81
Query: 90 ALKRAGKVVELEV 102
L+ G V + V
Sbjct: 82 VLRNCGNSVRMLV 94
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 14/93 (15%)
Query: 177 IIRVKKSENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDA 224
I ++++ EN LG SI GG E+K I ++++ +G A+ L +GD
Sbjct: 18 IHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDK 76
Query: 225 ILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 77 IMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 30 ENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGE 77
EN LG SI GG E+K I ++++ +G A+ L +GD I+ VNG
Sbjct: 25 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDKIMQVNGW 83
Query: 78 DLREATHDEAVKAL-KRAGKVVELEV 102
D+ THD+A K L KR+ +VV L V
Sbjct: 84 DMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMP---------ILISKIFKGMAADQTEQLYVGDAIL 226
R + ++K+ LGISI+GG I ISK+ AA + +L VG +L
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 227 SVNGEDLREATHDEAVKALKRAG 249
VN + L TH EAV+ L+ G
Sbjct: 71 EVNQQSLLGLTHGEAVQLLRSVG 93
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 34 LGISIKGGKENKMP---------ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
LGISI+GG I ISK+ AA + +L VG +L VN + L TH
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 85 DEAVKALKRAGKVVELEVGVGY 106
EAV+ L+ G + + V G+
Sbjct: 83 GEAVQLLRSVGDTLTVLVCDGF 104
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 14/93 (15%)
Query: 177 IIRVKKSENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDA 224
I ++++ EN LG SI GG E+K I ++++ +G A+ L +GD
Sbjct: 18 IHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDK 76
Query: 225 ILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 77 IMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 30 ENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGE 77
EN LG SI GG E+K I ++++ +G A+ L +GD I+ VNG
Sbjct: 25 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDKIMQVNGW 83
Query: 78 DLREATHDEAVKAL-KRAGKVVELEV 102
D+ THD+A K L KR+ +VV L V
Sbjct: 84 DMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 14/93 (15%)
Query: 177 IIRVKKSENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDA 224
I ++++ EN LG SI GG E+K I ++++ +G A+ L +GD
Sbjct: 18 IHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDK 76
Query: 225 ILSVNGEDLREATHDEAVKAL-KRAGKLVELEV 256
I+ VNG D+ THD+A K L KR+ ++V L V
Sbjct: 77 IMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 30 ENNGLGISIKGG----------KENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGE 77
EN LG SI GG E+K I ++++ +G A+ L +GD I+ VNG
Sbjct: 25 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIGDKIMQVNGW 83
Query: 78 DLREATHDEAVKAL-KRAGKVVELEV 102
D+ THD+A K L KR+ +VV L V
Sbjct: 84 DMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
+G G I GG E PILI + +AD+ +L+ GD ++ V+G + TH + +
Sbjct: 20 SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
Query: 246 KRAGKLVELEVKYLREV 262
A + ++ + R+V
Sbjct: 80 HHAARNGQVNLTVRRKV 96
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
+G G I GG E PILI + +AD+ +L+ GD ++ V+G + TH + +
Sbjct: 20 SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
Query: 92 KRAGK 96
A +
Sbjct: 80 HHAAR 84
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 185 NNGLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
NGLGI I GGKE ++ I+KI G +A+QT +L G +L NG L T++
Sbjct: 29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYE 88
Query: 240 EAVKALKRAGKLVELEVK 257
E + + E+ V+
Sbjct: 89 EVQSIISQQSGEAEICVR 106
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKE-----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
NGLGI I GGKE ++ I+KI G +A+QT +L G +L NG L T++
Sbjct: 29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYE 88
Query: 86 EAVKALKRAGKVVELEV 102
E + + E+ V
Sbjct: 89 EVQSIISQQSGEAEICV 105
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + + TH EA +K
Sbjct: 16 GFRLQGGKDFNMPLTISSLKDGGKAAQA-NVRIGDVVLSIDGINAQGMTHLEAQNKIK 72
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + + TH EA +K
Sbjct: 16 GFRLQGGKDFNMPLTISSLKDGGKAAQA-NVRIGDVVLSIDGINAQGMTHLEAQNKIK 72
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G G ++ G + P ++S + +G AD L GD IL+VN ++++A+H++ VK +
Sbjct: 14 GYGFTLSG----QAPCVLSCVMRGSPADFV-GLRAGDQILAVNEINVKKASHEDVVKLIG 68
Query: 93 RAGKVVELEVGVGYG 107
+ V+ + + G G
Sbjct: 69 KCSGVLHMVIAEGVG 83
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
G G ++ G + P ++S + +G AD L GD IL+VN ++++A+H++ VK +
Sbjct: 14 GYGFTLSG----QAPCVLSCVMRGSPADFV-GLRAGDQILAVNEINVKKASHEDVVKLIG 68
Query: 247 RAGKLVELEV 256
+ ++ + +
Sbjct: 69 KCSGVLHMVI 78
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + TH EA +K
Sbjct: 18 GFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIK 74
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + TH EA +K
Sbjct: 18 GFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIK 74
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G ++KGG E+ P+ +SKI G A ++++ GD ++++NG L + EA+ +K +
Sbjct: 24 GFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLY-GSRQEALILIKGS 82
Query: 249 GKLVELEVK 257
++++L V+
Sbjct: 83 FRILKLIVR 91
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G ++KGG E+ P+ +SKI G A ++++ GD ++++NG L + EA+ +K +
Sbjct: 24 GFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLY-GSRQEALILIKGS 82
Query: 95 GKVVELEV 102
++++L V
Sbjct: 83 FRILKLIV 90
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+Q R++ +KK +NG G ++ G E K I I I G A + L D +++VNG+
Sbjct: 4 HQPRVVVIKKG-SNGYGFYLRAGPEQKGQI-IKDIEPGSPA-EAAGLKNNDLVVAVNGKS 60
Query: 233 LREATHDEAVKALKRAGKLVELEV 256
+ HD V+ +++ G L V
Sbjct: 61 VEALDHDGVVEMIRKGGDQTTLLV 84
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+NG G ++ G E K I I I G A + L D +++VNG+ + HD V+
Sbjct: 15 SNGYGFYLRAGPEQKGQI-IKDIEPGSPA-EAAGLKNNDLVVAVNGKSVEALDHDGVVEM 72
Query: 91 LKRAGKVVELEV 102
+++ G L V
Sbjct: 73 IRKGGDQTTLLV 84
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G + GGK+ + P+ IS++ G A L +GD I +++GE+ TH EA +K
Sbjct: 16 GFRLVGGKDFEQPLAISRVTPGSKA-ALANLCIGDVITAIDGENTSNMTHLEAQNRIK 72
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
G + GGK+ + P+ IS++ G A L +GD I +++GE+ TH EA +K
Sbjct: 16 GFRLVGGKDFEQPLAISRVTPGSKA-ALANLCIGDVITAIDGENTSNMTHLEAQNRIK 72
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+IIR+ K+ LG +IK E I++++I +G AAD++ ++VGD + VNG + +
Sbjct: 6 KIIRLVKNREP-LGATIKK-DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVED 63
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+E ++ L ++ + ++
Sbjct: 64 KRPEEIIQILAQSQGAITFKI 84
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
LG +IK E I++++I +G AAD++ ++VGD + VNG + + +E ++ L +
Sbjct: 17 LGATIKK-DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQ 75
Query: 94 AGKVVELEV 102
+ + ++
Sbjct: 76 SQGAITFKI 84
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 177 IIRVKKSENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
II ++K + NGLG+S+ G K+ ++M I + I A ++ +GD +L +N + L
Sbjct: 28 IIELEK-DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYG 86
Query: 236 ATHDEAVKALKRAGKLVEL 254
+H A +K A V+L
Sbjct: 87 RSHQNASAIIKTAPSKVKL 105
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 30 ENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+ NGLG+S+ G K+ ++M I + I A ++ +GD +L +N + L +H A
Sbjct: 34 DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNAS 93
Query: 89 KALKRAGKVVEL 100
+K A V+L
Sbjct: 94 AIIKTAPSKVKL 105
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G I GG++ PI+++K+ + A+ + L GD I+++NG+ H EA ++++
Sbjct: 19 GFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 95 GKVVELEV 102
+ L++
Sbjct: 78 ASPLRLQL 85
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G I GG++ PI+++K+ + A+ + L GD I+++NG+ H EA ++++
Sbjct: 19 GFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 249 GKLVELEV 256
+ L++
Sbjct: 78 ASPLRLQL 85
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 35 GISIKGGKENKMPILISKIF-KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
G I GG++ PI+++K+ +G A D L GD I+++NGE H EA +++
Sbjct: 15 GFRITGGRDFHTPIMVTKVAERGKAKDA--DLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 94 AGKVVELEV 102
+ + L++
Sbjct: 73 SPSPLRLQL 81
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 189 GISIKGGKENKMPILISKIF-KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
G I GG++ PI+++K+ +G A D L GD I+++NGE H EA +++
Sbjct: 15 GFRITGGRDFHTPIMVTKVAERGKAKDA--DLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 248 AGKLVELEV 256
+ + L++
Sbjct: 73 SPSPLRLQL 81
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 35 GISIKGGKENKMPILISKIF-KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
G I GG++ PI+++K+ +G A D L GD I+++NGE H EA +++
Sbjct: 14 GFRITGGRDFHTPIMVTKVAERGKAKDA--DLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 94 AGKVVELEV 102
+ + L++
Sbjct: 72 SPSPLRLQL 80
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 189 GISIKGGKENKMPILISKIF-KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247
G I GG++ PI+++K+ +G A D L GD I+++NGE H EA +++
Sbjct: 14 GFRITGGRDFHTPIMVTKVAERGKAKDA--DLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 248 AGKLVELEV 256
+ + L++
Sbjct: 72 SPSPLRLQL 80
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 180 VKKSENNGLGISI-KGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE-- 235
++K + LG+ I + G + +P ++I+ + G A+++ +L +GD I+S+NG L
Sbjct: 7 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP 66
Query: 236 -ATHDEAVKALKRAGKLVELEVKYLREVTPYF-RKASIISEVGWELQRGFL 284
+T +K LK + V+L + VT R+ + ++G+ +Q G +
Sbjct: 67 LSTCQSIIKGLKNQSR-VKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGII 116
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 34 LGISI-KGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE---ATHDEAV 88
LG+ I + G + +P ++I+ + G A+++ +L +GD I+S+NG L +T +
Sbjct: 15 LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74
Query: 89 KALKRAGKV 97
K LK +V
Sbjct: 75 KGLKNQSRV 83
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 70
TE +F S + N +GISI GG + + I ++F A + GD
Sbjct: 15 TENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDE 74
Query: 71 ILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKV 123
I VNG ++ T E K ++ V+ EV + Y + Q+YKV
Sbjct: 75 ITGVNGRSIKGKTKVEVAKMIQE----VKGEVTIHYNKL---------QYYKV 114
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ ++K N +GISI GG + + I ++F A + GD I VNG ++ T
Sbjct: 28 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 87
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
E K ++ EVK EVT ++ K
Sbjct: 88 KVEVAKMIQ--------EVK--GEVTIHYNK 108
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 188 LGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 244
LG+ + GGK ++ I+K+ KG AD L GD +L NG+ L AT++E
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 245 LKRAGKLVELEVKYLREVTP 264
+ + ++E+ R P
Sbjct: 99 ILESKSEPQVEIIVSRPSGP 118
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 34 LGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
LG+ + GGK ++ I+K+ KG AD L GD +L NG+ L AT++E
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEE 94
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKG-------GKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
Q++++ ++K +N G I+ + +M + ++ + A Q L GD I
Sbjct: 4 QRKVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPA-QLAGLTPGDTIA 62
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKY 258
SVNG ++ H E V +K +G ++ LE Y
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101
+M + ++ + A Q L GD I SVNG ++ H E V +K +G V+ LE
Sbjct: 36 EMVTFVCRVHESSPA-QLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLE 91
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ ++K N +GISI GG + + I ++F A + GD I VNG ++ T
Sbjct: 9 VTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 68
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
E K ++ EVK EVT ++ K
Sbjct: 69 KVEVAKMIQ--------EVK--GEVTIHYNK 89
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
N +GISI GG + + I ++F A + GD I VNG ++ T E K +
Sbjct: 17 NLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 76
Query: 92 KRAGKVVELEVGVGYGR 108
+ V+ EV + Y +
Sbjct: 77 QE----VKGEVTIHYNK 89
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ ++K N +GISI GG + + I ++F A + GD I VNG ++ T
Sbjct: 23 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 82
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
E K ++ EVK EVT ++ K
Sbjct: 83 KVEVAKMIQ--------EVK--GEVTIHYNK 103
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
N +GISI GG + + I ++F A + GD I VNG ++ T E K +
Sbjct: 31 NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 90
Query: 92 KRAGKVVELEVGVGYGR 108
+ V+ EV + Y +
Sbjct: 91 QE----VKGEVTIHYNK 103
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ ++K N +GISI GG + + I ++F A + GD I VNG ++ T
Sbjct: 6 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 65
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
E K ++ EVK EVT ++ K
Sbjct: 66 KVEVAKMIQ--------EVK--GEVTIHYNK 86
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
N +GISI GG + + I ++F A + GD I VNG ++ T E K +
Sbjct: 14 NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 73
Query: 92 KRAGKVVELEVGVGYGR 108
+ V+ EV + Y +
Sbjct: 74 QE----VKGEVTIHYNK 86
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKG-------GKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
Q++++ ++K +N G I+ + +M ++++ + A Q L GD I
Sbjct: 4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPA-QLAGLTPGDTIA 62
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKY 258
SVNG ++ H E V +K +G ++ LE Y
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101
+M ++++ + A Q L GD I SVNG ++ H E V +K +G V+ LE
Sbjct: 36 EMVTFVARVHESSPA-QLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLE 91
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
+ R ++V+K + LGISI G+ K I +SK+ G A Q Y GD +L NG +L
Sbjct: 19 EPRHVKVQKG-SEPLGISIVSGE--KGGIYVSKVTVGSIAHQAGLEY-GDQLLEFNGINL 74
Query: 234 REATHDEA 241
R AT +A
Sbjct: 75 RSATEQQA 82
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
LGISI G+ K I +SK+ G A Q Y GD +L NG +LR AT +A
Sbjct: 32 LGISIVSGE--KGGIYVSKVTVGSIAHQAGLEY-GDQLLEFNGINLRSATEQQA 82
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In
Complex With An Elks1b C-Terminal Peptide
Length = 114
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 34 LGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
LG+ + GGK ++ I+K+ KG AD L GD +L NG+ L AT++E
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEV 95
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 188 LGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
LG+ + GGK ++ I+K+ KG AD L GD +L NG+ L AT++E
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEV 95
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R++ +KK +NG G ++ G E K I I I G A + L D +++VNG+ +
Sbjct: 4 RVVVIKKG-SNGYGFYLRAGPEQKGQI-IKDIEPGSPA-EAAGLKNNDLVVAVNGKSVEA 60
Query: 236 ATHDEAVKALKRAGKLVELEV 256
HD V+ +++ G L V
Sbjct: 61 LDHDGVVEMIRKGGDQTTLLV 81
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+NG G ++ G E K I I I G A + L D +++VNG+ + HD V+
Sbjct: 12 SNGYGFYLRAGPEQKGQI-IKDIEPGSPA-EAAGLKNNDLVVAVNGKSVEALDHDGVVEM 69
Query: 91 LKRAGKVVELEV 102
+++ G L V
Sbjct: 70 IRKGGDQTTLLV 81
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G + GG++ P+ IS++ G A L GD I ++NGE TH EA +K
Sbjct: 21 GFRLVGGRDFSAPLTISRVHAGSKA-ALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 79
Query: 95 GKVVELEVGVG 105
+ L V G
Sbjct: 80 HDHLTLSVSSG 90
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G + GG++ P+ IS++ G A L GD I ++NGE TH EA +K
Sbjct: 21 GFRLVGGRDFSAPLTISRVHAGSKA-ALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 79
Query: 249 GKLVELEV 256
+ L V
Sbjct: 80 HDHLTLSV 87
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 170 SVENQKRI-----IRVKKSENNGLGISIK------GGKENKMPILISKIFKGMAADQTEQ 218
SV N K++ I++KK GLG SI GG PI + I AA Q +
Sbjct: 2 SVYNTKKVGKRLNIQLKKG-TEGLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGR 57
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALK 246
L GD ++ VNG DL + +E V L+
Sbjct: 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 33 GLGISIK------GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
GLG SI GG PI + I AA Q +L GD ++ VNG DL + +E
Sbjct: 23 GLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 79
Query: 87 AVKALK 92
V L+
Sbjct: 80 VVSLLR 85
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 34 LGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
LG+ + GGK ++ I+K+ KG AD L GD +L NG L+ AT +E
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV 106
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 188 LGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
LG+ + GGK ++ I+K+ KG AD L GD +L NG L+ AT +E
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV 106
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+R + ++K ++NG G+++ G P+ + + + AA + + GD I+ VNG +
Sbjct: 8 QRCVIIQK-DDNGFGLTVSGDN----PVFVQSVKEDGAAMRA-GVQTGDRIIKVNGTLVT 61
Query: 235 EATHDEAVKALKRAGKLVELEVK 257
+ H E VK +K +G V L V+
Sbjct: 62 HSNHLEVVKLIK-SGSYVALTVQ 83
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++NG G+++ G P+ + + + AA + + GD I+ VNG + + H E VK
Sbjct: 16 DDNGFGLTVSGDN----PVFVQSVKEDGAAMRA-GVQTGDRIIKVNGTLVTHSNHLEVVK 70
Query: 90 ALKRAGKVVELEV 102
+K +G V L V
Sbjct: 71 LIK-SGSYVALTV 82
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G + GG++ P+ IS++ G A L GD I ++NGE TH EA +K
Sbjct: 15 GFRLVGGRDFSAPLTISRVHAGSKA-ALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 73
Query: 249 GKLVELEV 256
+ L V
Sbjct: 74 HDHLTLSV 81
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G + GG++ P+ IS++ G A L GD I ++NGE TH EA +K
Sbjct: 15 GFRLVGGRDFSAPLTISRVHAGSKA-ALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 73
Query: 95 GKVVELEV 102
+ L V
Sbjct: 74 HDHLTLSV 81
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 176 RIIRVKKSENNGLGISIKG-----------GKENKMPIL-ISKIFKGMAADQTEQLYVGD 223
R++R+ KSE+ G G +++G E P+ +S + G AAD+ + GD
Sbjct: 8 RVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA-GVRKGD 65
Query: 224 AILSVNGEDLREATHDEAVKALKRAGK 250
IL VNG ++ ATH + V L RAG+
Sbjct: 66 RILEVNGVNVEGATHKQVVD-LIRAGE 91
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 50 ISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 96
+S + G AAD+ + GD IL VNG ++ ATH + V L RAG+
Sbjct: 47 VSAVLPGGAADRA-GVRKGDRILEVNGVNVEGATHKQVVD-LIRAGE 91
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 176 RIIRVKKSENNGLGISIKG-----------GKENKMPIL-ISKIFKGMAADQTEQLYVGD 223
R++R+ KSE+ G G +++G E P+ +S + G AAD+ + GD
Sbjct: 8 RVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA-GVRKGD 65
Query: 224 AILSVNGEDLREATHDEAVKALKRAGK 250
IL VNG ++ ATH + V L RAG+
Sbjct: 66 RILEVNGVNVEGATHKQVVD-LIRAGE 91
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 50 ISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 96
+S + G AAD+ + GD IL VNG ++ ATH + V L RAG+
Sbjct: 47 VSAVLPGGAADRA-GVRKGDRILEVNGVNVEGATHKQVVD-LIRAGE 91
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 90 ALK 92
L+
Sbjct: 77 VLR 79
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 244 ALK 246
L+
Sbjct: 77 VLR 79
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ------LYVGDAILS 227
Q++++ V+K +N G I+ + S++F + Q + L GD + +
Sbjct: 15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLAN 74
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELE 255
+NG T+ + V ++ +G L+ +E
Sbjct: 75 INGVSTEGFTYKQVVDLIRSSGNLLTIE 102
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 90 ALK 92
L+
Sbjct: 77 VLR 79
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 244 ALK 246
L+
Sbjct: 77 VLR 79
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 176 RIIRVKKSENNGLGISIKG-----------GKENKMPIL-ISKIFKGMAADQTEQLYVGD 223
R++R+ KSE+ G G +++G E P+ +S + G AAD+ + GD
Sbjct: 8 RVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA-GVRKGD 65
Query: 224 AILSVNGEDLREATHDEAVKALKRAGK 250
IL VNG ++ ATH + V L RAG+
Sbjct: 66 RILEVNGVNVEGATHKQVVD-LIRAGE 91
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 50 ISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 96
+S + G AAD+ + GD IL VNG ++ ATH + V L RAG+
Sbjct: 47 VSAVLPGGAADRA-GVRKGDRILEVNGVNVEGATHKQVVD-LIRAGE 91
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 90 ALK 92
L+
Sbjct: 77 VLR 79
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 244 ALK 246
L+
Sbjct: 77 VLR 79
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 13 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 70
Query: 92 KRAGKVVELEV 102
+ A V L V
Sbjct: 71 RAALNAVRLLV 81
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 13 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 70
Query: 246 KRAGKLVELEV 256
+ A V L V
Sbjct: 71 RAALNAVRLLV 81
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 14 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 92 KRAGKVVELEV 102
+ A V L V
Sbjct: 72 RAALNAVRLLV 82
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 14 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 246 KRAGKLVELEV 256
+ A V L V
Sbjct: 72 RAALNAVRLLV 82
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 90 ALK 92
L+
Sbjct: 77 VLR 79
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 244 ALK 246
L+
Sbjct: 77 VLR 79
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 14 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 92 KRAGKVVELEV 102
+ A V L V
Sbjct: 72 RAALNAVRLLV 82
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 14 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 246 KRAGKLVELEV 256
+ A V L V
Sbjct: 72 RAALNAVRLLV 82
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 14 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 92 KRAGKVVELEV 102
+ A V L V
Sbjct: 72 RAALNAVRLLV 82
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
NG G + G K K+ I + G A++ L GD ++ VNGE++ + TH + V +
Sbjct: 14 NGYGFHLHGEK-GKLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRI 71
Query: 246 KRAGKLVELEV 256
+ A V L V
Sbjct: 72 RAALNAVRLLV 82
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 90 ALK 92
L+
Sbjct: 77 VLR 79
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 244 ALK 246
L+
Sbjct: 77 VLR 79
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 34 LGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
LGISI G ++ I I I KG A ++ GD +L VN + ++D+AV+ L
Sbjct: 15 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 74
Query: 92 K 92
+
Sbjct: 75 R 75
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 188 LGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
LGISI G ++ I I I KG A ++ GD +L VN + ++D+AV+ L
Sbjct: 15 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 74
Query: 246 K 246
+
Sbjct: 75 R 75
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 13 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 72
Query: 90 ALK 92
L+
Sbjct: 73 VLR 75
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 13 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 72
Query: 244 ALK 246
L+
Sbjct: 73 VLR 75
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 13 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 72
Query: 90 ALK 92
L+
Sbjct: 73 VLR 75
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 13 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 72
Query: 244 ALK 246
L+
Sbjct: 73 VLR 75
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
+ R+++ +K+ + +GI++K + N ++++I G + L+VGD I +NG +
Sbjct: 1 RSRLVQFQKNTDEPMGITLKMNELNH--CIVARIMHGGMIHRQGTLHVGDEIREINGISV 58
Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
T ++ K L+ E+ ++ P +R+
Sbjct: 59 ANQTVEQLQKMLR------EMRGSITFKIVPSYRE 87
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 186 NGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
+G G+ ++GG + P L+ I A++ L VGD +LS+NG + T +EA
Sbjct: 27 SGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEA 86
Query: 242 VKALKRA--GKLVELEVKY 258
+ L+ A V LEV++
Sbjct: 87 NQLLRDAALAHKVVLEVEF 105
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 32 NGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
+G G+ ++GG + P L+ I A++ L VGD +LS+NG + T +EA
Sbjct: 27 SGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEA 86
Query: 88 VKALKRAG----KVVELEVGVG 105
+ L+ A V+E+E G
Sbjct: 87 NQLLRDAALAHKVVLEVEFDSG 108
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 11 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 70
Query: 90 ALK 92
L+
Sbjct: 71 VLR 73
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 186 NGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
N LGISI G + I I I KG A ++ GD +L VN + ++D+AV+
Sbjct: 11 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 70
Query: 244 ALK 246
L+
Sbjct: 71 VLR 73
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 34 LGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
LGISI G ++ I I I KG A ++ GD +L VN + ++D+AV+ L
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 92 K 92
+
Sbjct: 72 R 72
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 188 LGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
LGISI G ++ I I I KG A ++ GD +L VN + ++D+AV+ L
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 246 K 246
+
Sbjct: 72 R 72
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 173 NQKRI-----IRVKKSENNGLGISIK------GGKENKMPILISKIFKGMAADQTEQLYV 221
N K+I I++KK GLG SI GG PI + I AA Q +L
Sbjct: 24 NTKKIGKRLNIQLKKG-TEGLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGRLKA 79
Query: 222 GDAILSVNGEDLREATHDEAVKALK 246
GD ++ VNG DL + +E V L+
Sbjct: 80 GDRLIEVNGVDLVGKSQEEVVSLLR 104
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
PI + I AA Q +L GD ++ VNG DL + +E V L+
Sbjct: 59 PIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R++ +KK +NG G ++ G E K I I I G A + L D +++VNG+ +
Sbjct: 8 RVVVIKKG-SNGYGFYLRAGPEQKGQI-IKDIEPGSPA-EAAGLKNNDLVVAVNGKSVEA 64
Query: 236 ATHDEAVKALKRAGKLVELEV 256
HD V+ +++ G L V
Sbjct: 65 LDHDGVVEMIRKGGDQTTLLV 85
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+NG G ++ G E K I I I G A + L D +++VNG+ + HD V+
Sbjct: 16 SNGYGFYLRAGPEQKGQI-IKDIEPGSPA-EAAGLKNNDLVVAVNGKSVEALDHDGVVEM 73
Query: 91 LKRAG 95
+++ G
Sbjct: 74 IRKGG 78
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKG-----GKENKMPIL--ISKIFKGMAADQTEQLYVGDAIL 226
Q++++ ++K +N G I+ +E ++ + ++++ + A Q L GD I
Sbjct: 4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPA-QLAGLTPGDTIA 62
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKY 258
SVNG ++ H E V +K +G ++ LE Y
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 65 LYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101
L GD I SVNG ++ H E V +K +G V+ LE
Sbjct: 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLE 91
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 178 IRVKKSENNGLGISIK------GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
I++KK GLG SI GG PI + I AA Q +L GD ++ VNG
Sbjct: 9 IQLKKG-TEGLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 64
Query: 232 DLREATHDEAVKALK 246
DL + +E V L+
Sbjct: 65 DLAGKSQEEVVSLLR 79
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
PI + I AA Q +L GD ++ VNG DL + +E V L+
Sbjct: 34 PIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 79
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 176 RIIRVKKSENNGLGISIKGG-KENKMPIL-ISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
R+I V K GLG+ I GG N+ P++ I ++ G + +L GD ++S+N E +
Sbjct: 17 RVITVTK--ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESM 74
Query: 234 REATHDEAVKALKRA 248
+ +EA + RA
Sbjct: 75 IGVSFEEAKSIITRA 89
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 19 RDFYSENYKYTENNGLGISIKGG-KENKMPIL-ISKIFKGMAADQTEQLYVGDAILSVNG 76
RD T+ GLG+ I GG N+ P++ I ++ G + +L GD ++S+N
Sbjct: 12 RDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINK 71
Query: 77 EDLREATHDEAVKALKRA 94
E + + +EA + RA
Sbjct: 72 ESMIGVSFEEAKSIITRA 89
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL 100
I + + G AA + V D I++V+G +++ + + V+ L+ AG+VV L
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHL 100
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVEL 254
I + + G AA + V D I++V+G +++ + + V+ L+ AG++V L
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHL 100
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLV 252
D ++ VNGE++ +A+H+E V+ +K++G V
Sbjct: 54 DHLIEVNGENVEDASHEEVVEKVKKSGSRV 83
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 69 DAILSVNGEDLREATHDEAVKALKRAGKVV 98
D ++ VNGE++ +A+H+E V+ +K++G V
Sbjct: 54 DHLIEVNGENVEDASHEEVVEKVKKSGSRV 83
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGD 223
E K+ IRV+ ++ LG SI GG + + I ++++ A ++ L GD
Sbjct: 7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGD 64
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
I+ NG H +AV LK VEL + +REV+
Sbjct: 65 KIIQANGYSFINIEHGQAVSLLKTFQNTVELII--VREVS 102
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 180 VKKSENNGLGISI-KGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE-- 235
++K + LG+ I + G + +P ++I+ + G A+++ +L +GD I+S+NG L
Sbjct: 7 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP 66
Query: 236 -ATHDEAVKALKRAGKL 251
+T +K LK ++
Sbjct: 67 LSTCQSIIKGLKNQSRV 83
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 34 LGISI-KGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE---ATHDEAV 88
LG+ I + G + +P ++I+ + G A+++ +L +GD I+S+NG L +T +
Sbjct: 15 LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74
Query: 89 KALKRAGKV 97
K LK +V
Sbjct: 75 KGLKNQSRV 83
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ G G ++ GG E + I + A ++ GD I+SVN + TH + VK
Sbjct: 28 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 87
Query: 91 LKR--AGKVVELEVGVGY 106
+ G V+LE+ GY
Sbjct: 88 FQSIPIGASVDLELCRGY 105
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 179 RVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 238
+++KS + G G ++ GG E + I + A ++ GD I+SVN + TH
Sbjct: 23 KLRKS-SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 239 DEAVKALKR--AGKLVELEV 256
+ VK + G V+LE+
Sbjct: 82 AQVVKIFQSIPIGASVDLEL 101
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 187 GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
G GI ++G + P LIS I A++ L +GD ++++NG ++T +EA
Sbjct: 28 GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 87
Query: 243 KALKRAG--KLVELEVKY 258
+ L+ + V LE+++
Sbjct: 88 QLLRDSSITSKVTLEIEF 105
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 33 GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G GI ++G + P LIS I A++ L +GD ++++NG ++T +EA
Sbjct: 28 GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 87
Query: 89 KALK 92
+ L+
Sbjct: 88 QLLR 91
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 189 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 248
G + GG + P++I++I G A L GD IL+++G TH +A +K A
Sbjct: 18 GFRLSGGIDFNQPLVITRITPGSKA-AAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 249 GKLVELEV 256
+ L++
Sbjct: 77 SYQLCLKI 84
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 35 GISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94
G + GG + P++I++I G A L GD IL+++G TH +A +K A
Sbjct: 18 GFRLSGGIDFNQPLVITRITPGSKA-AAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 95 GKVVELEV 102
+ L++
Sbjct: 77 SYQLCLKI 84
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 187 GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 242
G GI ++G + P LIS I A++ L +GD ++++NG ++T +EA
Sbjct: 19 GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 78
Query: 243 KALKRAG--KLVELEVKY 258
+ L+ + V LE+++
Sbjct: 79 QLLRDSSITSKVTLEIEF 96
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 33 GLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G GI ++G + P LIS I A++ L +GD ++++NG ++T +EA
Sbjct: 19 GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 78
Query: 89 KALK 92
+ L+
Sbjct: 79 QLLR 82
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
+ I + +G A Q +L D +L++NG DL+ T + A + ++ +G+ V L +
Sbjct: 31 VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI 85
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+ I + +G A Q +L D +L++NG DL+ T + A + ++ +G+ V L +
Sbjct: 31 VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI 85
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 178 IRVKKSENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
IRV+ ++ LG SI GG + + I ++++ A ++ L GD I+ N
Sbjct: 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQAN 62
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
G H +AV LK VEL + +REV+
Sbjct: 63 GYSFINIEHGQAVSLLKTFQNTVELII--VREVS 94
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 17 SSRDFYSENYKYTENNGLGISI-KGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSV 74
SS D + E K LG+ I + G + +P ++I+ + G A+++ +L +GD I+S+
Sbjct: 5 SSGDVFIEKQK---GEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI 61
Query: 75 NGEDLRE---ATHDEAVKALKRAGKV 97
NG L +T +K LK +V
Sbjct: 62 NGTSLVGLPLSTCQSIIKGLKNQSRV 87
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 180 VKKSENNGLGISI-KGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE-- 235
++K + LG+ I + G + +P ++I+ + G A+++ +L +GD I+S+NG L
Sbjct: 11 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP 70
Query: 236 -ATHDEAVKALKRAGKL 251
+T +K LK ++
Sbjct: 71 LSTCQSIIKGLKNQSRV 87
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 176 RIIRVKKSENNGLGIS--IKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
R++ ++K+ LG++ ++GG+ ++I++I G Q L+VGD I VNG+ +
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEGGE-----LVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
N G G +I GG E + + + A Q ++ GD I+ +N + TH + VK
Sbjct: 29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88
Query: 91 LKRA--GKVVELEVGVGY 106
+ G+ V L + GY
Sbjct: 89 FQSVPIGQSVNLVLCRGY 106
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 182 KSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 241
K N G G +I GG E + + + A Q ++ GD I+ +N + TH +
Sbjct: 26 KKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADV 85
Query: 242 VKALK 246
VK +
Sbjct: 86 VKLFQ 90
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 25 NYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
+YK EN G + E I + ++ +G A + L GD I+ VNGE + T+
Sbjct: 40 SYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEA-GLCTGDRIIKVNGESVIGKTY 98
Query: 85 DEAVKALKRAGKVVELEV 102
+ + ++ + +EL V
Sbjct: 99 SQVIALIQNSDTTLELSV 116
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 176 RIIRVKKSENNGLGIS-IKGGKENKMPI-LISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
R + ++K GLG++ ++ G + +P +I+ + G A+++ L +GD + ++NG L
Sbjct: 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
K+ + + +G+ + GG N + I ++ + + A + E L GD IL VN D +E
Sbjct: 34 KFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAK-EGLEEGDQILRVNNVDFTNIIREE 90
Query: 87 AV 88
AV
Sbjct: 91 AV 92
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 179 RVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 238
+++KS + G G ++ GG E + I + A ++ GD I+SVN + TH
Sbjct: 5 KLRKS-SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 239 DEAVKALKR--AGKLVELEV 256
+ VK + G V+LE+
Sbjct: 64 AQVVKIFQSIPIGASVDLEL 83
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
K+ + + +G+ + GG N + I ++ + + A + E L GD IL VN D +E
Sbjct: 9 KFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAK-EGLEEGDQILRVNNVDFTNIIREE 65
Query: 87 AV 88
AV
Sbjct: 66 AV 67
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
K+ + + +G+ + GG N + I ++ + + A + E L GD IL VN D +E
Sbjct: 6 KFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAK-EGLEEGDQILRVNNVDFTNIIREE 62
Query: 87 AV 88
AV
Sbjct: 63 AV 64
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
K+ + + +G+ + GG N + I ++ + + A + E L GD IL VN D +E
Sbjct: 14 KFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAK-EGLEEGDQILRVNNVDFTNIIREE 70
Query: 87 AV 88
AV
Sbjct: 71 AV 72
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+R + ++K ++ G G ++ G + +L+ + G AA + + GD I+ VNG +
Sbjct: 9 QRCVIIQKDQH-GFGFTVSGDR----IVLVQSVRPGGAAMKA-GVKEGDRIIKVNGTMVT 62
Query: 235 EATHDEAVKALKRAGKLVEL 254
++H E VK +K +G V L
Sbjct: 63 NSSHLEVVKLIK-SGAYVAL 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,813,530
Number of Sequences: 62578
Number of extensions: 941861
Number of successful extensions: 3193
Number of sequences better than 100.0: 210
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2725
Number of HSP's gapped (non-prelim): 437
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)