Query psy4897
Match_columns 774
No_of_seqs 541 out of 2099
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:32:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3551|consensus 100.0 2E-118 3E-123 938.8 26.5 478 106-655 14-505 (506)
2 KOG3549|consensus 100.0 7.2E-88 1.6E-92 699.0 22.8 420 171-666 51-501 (505)
3 KOG3551|consensus 100.0 7.9E-33 1.7E-37 292.3 8.1 219 510-758 237-487 (506)
4 cd01258 PH_syntrophin Syntroph 100.0 1.2E-29 2.6E-34 231.4 8.3 87 457-545 15-108 (108)
5 KOG3209|consensus 99.9 4.8E-25 1E-29 246.8 19.8 231 18-258 751-981 (984)
6 KOG3209|consensus 99.9 6.8E-22 1.5E-26 221.7 18.6 192 20-264 649-842 (984)
7 KOG3549|consensus 99.9 1.1E-21 2.3E-26 205.8 8.8 309 19-358 53-387 (505)
8 KOG3580|consensus 99.8 4.5E-19 9.8E-24 195.8 17.1 234 18-263 6-282 (1027)
9 KOG3580|consensus 99.6 4.1E-15 8.9E-20 164.9 16.2 236 19-265 198-495 (1027)
10 KOG3605|consensus 99.6 1.2E-15 2.6E-20 171.0 10.5 178 1-254 627-809 (829)
11 TIGR02037 degP_htrA_DO peripla 99.5 2.5E-13 5.3E-18 154.1 19.6 166 45-262 256-423 (428)
12 PRK10139 serine endoprotease; 99.5 3.3E-13 7.2E-18 153.9 19.5 158 45-261 289-448 (455)
13 PRK10942 serine endoprotease; 99.5 4.6E-13 9.9E-18 153.4 20.0 154 45-261 310-466 (473)
14 PF00595 PDZ: PDZ domain (Also 99.5 1.2E-13 2.5E-18 120.5 10.9 80 23-103 1-81 (81)
15 PRK10779 zinc metallopeptidase 99.5 2.4E-13 5.2E-18 155.1 16.1 153 47-261 127-280 (449)
16 TIGR00054 RIP metalloprotease 99.3 9E-12 1.9E-16 141.0 15.2 134 46-261 128-262 (420)
17 KOG3550|consensus 99.3 8E-12 1.7E-16 118.5 8.2 77 28-104 97-173 (207)
18 PF00595 PDZ: PDZ domain (Also 99.2 3.8E-11 8.2E-16 104.6 10.1 79 178-257 2-81 (81)
19 KOG3550|consensus 99.2 2.6E-11 5.7E-16 115.1 8.6 88 174-262 90-177 (207)
20 cd00992 PDZ_signaling PDZ doma 99.1 5.5E-10 1.2E-14 96.7 11.9 80 22-102 2-81 (82)
21 smart00228 PDZ Domain present 99.1 1.7E-09 3.7E-14 93.8 12.4 82 22-105 3-84 (85)
22 cd00136 PDZ PDZ domain, also c 99.0 3.4E-09 7.4E-14 89.3 9.9 68 32-102 1-69 (70)
23 KOG3553|consensus 98.9 1E-09 2.2E-14 97.7 3.2 82 22-105 17-116 (124)
24 cd01260 PH_CNK Connector enhan 98.9 1.3E-08 2.7E-13 91.8 9.8 80 458-545 17-96 (96)
25 PF13180 PDZ_2: PDZ domain; PD 98.9 5.3E-09 1.2E-13 91.5 7.1 71 32-106 1-73 (82)
26 cd00992 PDZ_signaling PDZ doma 98.8 3.3E-08 7.1E-13 85.6 11.1 80 176-256 2-81 (82)
27 KOG1892|consensus 98.8 9.9E-09 2.2E-13 119.6 8.9 88 17-106 930-1020(1629)
28 smart00228 PDZ Domain present 98.7 1.3E-07 2.8E-12 81.9 11.9 81 177-259 4-84 (85)
29 PF00169 PH: PH domain; Inter 98.7 1.4E-07 3E-12 83.6 11.7 85 457-546 13-103 (104)
30 cd00136 PDZ PDZ domain, also c 98.7 1.1E-07 2.3E-12 80.1 9.3 67 187-256 2-69 (70)
31 KOG0792|consensus 98.7 1.6E-09 3.4E-14 128.7 -3.4 194 185-387 715-961 (1144)
32 cd00988 PDZ_CTP_protease PDZ d 98.7 1E-07 2.3E-12 83.3 8.9 70 32-105 2-72 (85)
33 PF13180 PDZ_2: PDZ domain; PD 98.6 2.2E-07 4.8E-12 81.3 8.9 72 187-262 2-75 (82)
34 KOG3651|consensus 98.6 1.7E-07 3.6E-12 98.4 8.9 82 22-103 6-87 (429)
35 KOG3571|consensus 98.6 1.2E-07 2.5E-12 105.4 7.8 88 17-104 246-338 (626)
36 cd01250 PH_centaurin Centaurin 98.5 7.3E-07 1.6E-11 79.0 9.8 80 458-544 13-93 (94)
37 cd01246 PH_oxysterol_bp Oxyste 98.5 1.2E-06 2.5E-11 77.3 10.1 80 458-545 12-91 (91)
38 smart00233 PH Pleckstrin homol 98.5 1.7E-06 3.6E-11 75.3 11.0 84 458-546 15-101 (102)
39 cd01247 PH_GPBP Goodpasture an 98.4 1.5E-06 3.2E-11 78.1 10.0 79 458-544 12-90 (91)
40 cd00991 PDZ_archaeal_metallopr 98.4 6.6E-07 1.4E-11 77.9 7.3 62 42-106 6-69 (79)
41 cd00988 PDZ_CTP_protease PDZ d 98.4 1.1E-06 2.4E-11 76.7 8.2 69 187-259 3-72 (85)
42 cd01252 PH_cytohesin Cytohesin 98.4 2.4E-06 5.3E-11 80.9 11.1 86 458-548 13-115 (125)
43 KOG3553|consensus 98.4 1.5E-07 3.3E-12 84.0 1.7 70 187-258 36-115 (124)
44 cd01265 PH_PARIS-1 PARIS-1 ple 98.3 2.7E-06 5.9E-11 76.9 9.9 78 458-545 14-93 (95)
45 cd00990 PDZ_glycyl_aminopeptid 98.3 1.9E-06 4.1E-11 74.5 8.5 66 34-106 3-68 (80)
46 cd01251 PH_centaurin_alpha Cen 98.3 5.8E-06 1.2E-10 76.0 10.2 80 458-546 13-100 (103)
47 cd01266 PH_Gab Gab (Grb2-assoc 98.3 4.6E-06 1E-10 77.1 9.4 84 458-545 16-107 (108)
48 cd01233 Unc104 Unc-104 pleckst 98.3 7.2E-06 1.6E-10 74.8 10.4 80 458-546 15-98 (100)
49 cd00987 PDZ_serine_protease PD 98.3 2.9E-06 6.3E-11 74.6 7.6 59 45-106 23-83 (90)
50 cd00989 PDZ_metalloprotease PD 98.2 4.6E-06 1E-10 71.7 8.5 58 46-106 12-70 (79)
51 KOG3552|consensus 98.2 1.2E-06 2.6E-11 102.8 5.8 78 20-105 55-132 (1298)
52 cd00991 PDZ_archaeal_metallopr 98.2 6.5E-06 1.4E-10 71.7 8.4 61 199-262 9-71 (79)
53 cd01263 PH_anillin Anillin Ple 98.2 5.6E-06 1.2E-10 78.3 8.2 87 457-545 15-122 (122)
54 cd00989 PDZ_metalloprotease PD 98.2 9.4E-06 2E-10 69.8 8.8 59 200-261 12-71 (79)
55 cd00821 PH Pleckstrin homology 98.1 1.1E-05 2.4E-10 69.4 8.7 82 458-544 13-95 (96)
56 PLN00049 carboxyl-terminal pro 98.1 8.5E-06 1.8E-10 91.8 10.1 75 31-106 84-162 (389)
57 KOG3651|consensus 98.1 8.4E-06 1.8E-10 85.9 9.0 83 176-258 6-88 (429)
58 cd01236 PH_outspread Outspread 98.1 1.5E-05 3.3E-10 73.4 9.4 78 457-543 20-101 (104)
59 cd00986 PDZ_LON_protease PDZ d 98.1 7.4E-06 1.6E-10 71.0 6.8 57 46-106 8-66 (79)
60 cd00900 PH-like Pleckstrin hom 98.1 1.7E-05 3.8E-10 68.7 9.2 83 458-545 16-99 (99)
61 cd01235 PH_SETbf Set binding f 98.1 2E-05 4.4E-10 71.2 9.9 79 458-545 12-100 (101)
62 KOG3552|consensus 98.1 4.2E-06 9.2E-11 98.4 6.3 80 171-258 52-131 (1298)
63 cd01241 PH_Akt Akt pleckstrin 98.1 3.5E-05 7.5E-10 70.7 10.8 86 458-544 14-100 (102)
64 TIGR00225 prc C-terminal pepti 98.1 9.7E-06 2.1E-10 89.5 8.4 72 31-106 50-122 (334)
65 cd00990 PDZ_glycyl_aminopeptid 98.1 1.4E-05 3E-10 69.1 7.7 67 188-261 3-69 (80)
66 KOG1892|consensus 98.1 8.8E-06 1.9E-10 95.8 8.2 89 173-263 932-1023(1629)
67 cd01258 PH_syntrophin Syntroph 98.0 8.6E-07 1.9E-11 81.8 -0.4 49 382-444 1-49 (108)
68 KOG3542|consensus 98.0 7.4E-06 1.6E-10 93.5 6.7 87 16-104 531-618 (1283)
69 COG0793 Prc Periplasmic protea 98.0 2E-05 4.4E-10 89.1 9.9 73 30-105 98-171 (406)
70 KOG3938|consensus 98.0 1E-05 2.3E-10 84.0 6.1 76 24-103 130-208 (334)
71 KOG3571|consensus 98.0 2.5E-05 5.4E-10 87.3 9.5 87 172-258 247-338 (626)
72 KOG3606|consensus 98.0 1.7E-05 3.6E-10 82.6 7.6 90 174-263 158-257 (358)
73 cd00987 PDZ_serine_protease PD 98.0 2.8E-05 6.2E-10 68.3 7.9 59 200-261 24-84 (90)
74 cd01238 PH_Tec Tec pleckstrin 97.9 5.6E-05 1.2E-09 69.8 9.7 81 457-544 17-105 (106)
75 cd00986 PDZ_LON_protease PDZ d 97.9 3.8E-05 8.2E-10 66.6 8.1 58 200-261 8-67 (79)
76 PF15410 PH_9: Pleckstrin homo 97.9 4.8E-05 1E-09 71.7 9.4 86 458-546 23-118 (119)
77 KOG4371|consensus 97.9 2.3E-05 5E-10 93.5 8.7 183 19-258 1146-1328(1332)
78 KOG3606|consensus 97.9 2E-05 4.4E-10 82.0 7.3 75 30-104 169-252 (358)
79 TIGR01713 typeII_sec_gspC gene 97.9 2.5E-05 5.4E-10 83.3 8.0 73 33-106 178-250 (259)
80 cd01230 PH_EFA6 EFA6 Pleckstri 97.9 9.6E-05 2.1E-09 69.6 10.2 87 458-547 23-112 (117)
81 cd01253 PH_beta_spectrin Beta- 97.9 7.5E-05 1.6E-09 68.2 9.2 81 458-544 20-103 (104)
82 cd01264 PH_melted Melted pleck 97.9 8E-05 1.7E-09 68.3 9.0 80 457-545 15-100 (101)
83 PRK11186 carboxy-terminal prot 97.9 4.7E-05 1E-09 90.7 9.6 71 32-105 244-320 (667)
84 cd01245 PH_RasGAP_CG5898 RAS G 97.8 0.0001 2.3E-09 67.2 9.1 81 458-544 13-97 (98)
85 TIGR03279 cyano_FeS_chp putati 97.8 0.00013 2.9E-09 82.2 11.6 135 49-257 1-147 (433)
86 cd01257 PH_IRS Insulin recepto 97.8 0.00019 4.1E-09 65.8 10.5 81 460-544 13-100 (101)
87 PRK10898 serine endoprotease; 97.8 6.1E-05 1.3E-09 83.9 8.7 61 45-106 278-338 (353)
88 PLN00049 carboxyl-terminal pro 97.8 7E-05 1.5E-09 84.5 9.2 76 185-261 84-163 (389)
89 KOG0609|consensus 97.8 6.9E-05 1.5E-09 85.1 8.5 85 19-105 121-205 (542)
90 TIGR00225 prc C-terminal pepti 97.7 8.1E-05 1.8E-09 82.2 7.8 72 186-261 51-123 (334)
91 TIGR02037 degP_htrA_DO peripla 97.7 0.00011 2.4E-09 83.9 8.7 58 46-106 362-421 (428)
92 COG0793 Prc Periplasmic protea 97.7 0.00011 2.5E-09 83.1 8.4 73 185-260 99-172 (406)
93 TIGR02038 protease_degS peripl 97.7 8.5E-05 1.9E-09 82.7 7.2 58 46-106 278-337 (351)
94 cd01237 Unc112 Unc-112 pleckst 97.6 0.00028 6.1E-09 64.9 9.2 86 458-546 17-103 (106)
95 cd01244 PH_RasGAP_CG9209 RAS_G 97.6 0.00027 5.8E-09 64.5 8.8 77 458-544 18-97 (98)
96 PF15413 PH_11: Pleckstrin hom 97.6 0.00033 7.1E-09 65.4 9.6 84 458-545 13-112 (112)
97 TIGR01713 typeII_sec_gspC gene 97.6 0.00019 4.2E-09 76.6 8.6 61 199-262 190-252 (259)
98 KOG3542|consensus 97.6 9.8E-05 2.1E-09 84.6 6.4 85 172-258 533-618 (1283)
99 cd01219 PH_FGD FGD (faciogenit 97.6 0.00056 1.2E-08 62.6 10.2 85 458-546 15-99 (101)
100 PRK10779 zinc metallopeptidase 97.6 0.00023 5E-09 81.8 9.3 58 46-106 221-279 (449)
101 PF04495 GRASP55_65: GRASP55/6 97.5 0.0016 3.5E-08 63.1 13.4 88 14-104 4-100 (138)
102 PRK10139 serine endoprotease; 97.5 0.0002 4.3E-09 82.4 8.0 58 46-106 390-447 (455)
103 TIGR00054 RIP metalloprotease 97.5 0.00019 4.1E-09 81.8 7.7 58 46-106 203-261 (420)
104 PRK10942 serine endoprotease; 97.5 0.00025 5.5E-09 81.9 8.0 58 46-106 408-465 (473)
105 KOG0609|consensus 97.4 0.00034 7.4E-09 79.6 8.5 84 174-259 122-205 (542)
106 PRK11186 carboxy-terminal prot 97.4 0.00034 7.5E-09 83.4 7.6 71 186-259 244-320 (667)
107 KOG3605|consensus 97.3 0.00023 4.9E-09 81.9 4.5 79 15-101 731-810 (829)
108 TIGR02038 protease_degS peripl 97.3 0.00059 1.3E-08 76.0 7.7 59 200-261 278-338 (351)
109 PRK10898 serine endoprotease; 97.2 0.00079 1.7E-08 75.1 7.9 59 200-261 279-339 (353)
110 KOG4407|consensus 97.2 0.00044 9.5E-09 84.2 5.6 139 12-258 37-200 (1973)
111 KOG3834|consensus 96.9 0.013 2.8E-07 65.4 13.6 143 46-258 15-166 (462)
112 cd01254 PH_PLD Phospholipase D 96.9 0.0047 1E-07 58.5 8.9 81 456-545 28-121 (121)
113 TIGR02860 spore_IV_B stage IV 96.9 0.0032 7E-08 70.8 9.0 69 30-106 94-171 (402)
114 KOG1421|consensus 96.9 0.015 3.2E-07 67.9 14.1 143 47-256 304-457 (955)
115 COG3975 Predicted protease wit 96.8 0.0023 5E-08 73.0 6.9 73 22-106 439-513 (558)
116 PF04495 GRASP55_65: GRASP55/6 96.8 0.005 1.1E-07 59.7 8.2 83 174-259 10-101 (138)
117 KOG0606|consensus 96.8 0.0025 5.3E-08 77.9 7.2 82 21-103 626-714 (1205)
118 KOG1320|consensus 96.7 0.0044 9.5E-08 70.8 8.4 57 200-259 398-456 (473)
119 COG0265 DegQ Trypsin-like seri 96.7 0.0043 9.3E-08 68.9 8.0 62 44-106 268-329 (347)
120 PF14685 Tricorn_PDZ: Tricorn 96.7 0.0088 1.9E-07 53.6 8.2 60 46-106 12-80 (88)
121 TIGR03279 cyano_FeS_chp putati 96.6 0.0034 7.3E-08 71.1 6.1 52 204-260 2-54 (433)
122 TIGR02860 spore_IV_B stage IV 96.5 0.009 1.9E-07 67.3 9.1 69 185-261 95-172 (402)
123 KOG3129|consensus 96.5 0.0062 1.3E-07 62.0 6.6 59 48-107 141-201 (231)
124 KOG0930|consensus 96.4 0.013 2.8E-07 61.9 8.8 84 458-546 274-375 (395)
125 PF14685 Tricorn_PDZ: Tricorn 96.3 0.01 2.3E-07 53.1 6.6 60 200-261 12-81 (88)
126 cd01220 PH_CDEP Chondrocyte-de 96.3 0.032 7E-07 51.0 9.9 82 460-547 16-98 (99)
127 PF15409 PH_8: Pleckstrin homo 96.2 0.031 6.7E-07 50.2 8.9 77 457-545 10-88 (89)
128 KOG1738|consensus 96.1 0.0064 1.4E-07 70.6 5.4 75 29-105 210-284 (638)
129 KOG0690|consensus 96.1 0.0093 2E-07 64.7 6.1 88 458-546 28-116 (516)
130 COG3480 SdrC Predicted secrete 96.0 0.013 2.9E-07 63.2 6.8 68 46-115 130-197 (342)
131 cd01242 PH_ROK Rok (Rho- assoc 96.0 0.034 7.4E-07 51.6 8.5 82 458-545 17-109 (112)
132 KOG3938|consensus 95.9 0.014 2.9E-07 61.4 6.0 83 172-257 124-208 (334)
133 KOG1738|consensus 95.9 0.02 4.3E-07 66.6 7.9 78 184-263 211-288 (638)
134 cd01256 PH_dynamin Dynamin ple 95.9 0.057 1.2E-06 49.0 9.0 80 462-546 20-105 (110)
135 PRK09681 putative type II secr 95.6 0.032 7E-07 60.0 7.7 47 58-107 219-267 (276)
136 KOG3129|consensus 95.0 0.053 1.2E-06 55.4 6.6 59 202-261 141-201 (231)
137 PRK09681 putative type II secr 95.0 0.051 1.1E-06 58.5 6.7 48 214-264 221-270 (276)
138 COG0265 DegQ Trypsin-like seri 94.9 0.07 1.5E-06 59.2 7.8 60 199-261 269-330 (347)
139 KOG0606|consensus 94.7 0.072 1.6E-06 65.7 7.7 79 178-258 630-715 (1205)
140 KOG3532|consensus 94.7 0.084 1.8E-06 61.7 7.9 74 26-104 380-453 (1051)
141 KOG1421|consensus 94.7 0.067 1.4E-06 62.7 7.1 59 200-262 303-362 (955)
142 cd01243 PH_MRCK MRCK (myotonic 94.7 0.2 4.4E-06 47.3 9.0 82 458-543 17-116 (122)
143 KOG3532|consensus 94.7 0.093 2E-06 61.4 8.1 72 182-258 382-453 (1051)
144 cd01264 PH_melted Melted pleck 94.7 0.069 1.5E-06 49.1 5.8 54 302-357 45-101 (101)
145 COG3480 SdrC Predicted secrete 94.4 0.099 2.2E-06 56.7 7.0 59 200-262 130-190 (342)
146 cd01259 PH_Apbb1ip Apbb1ip (Am 94.2 0.19 4.2E-06 46.8 7.6 87 456-545 11-107 (114)
147 COG3975 Predicted protease wit 94.1 0.051 1.1E-06 62.4 4.3 67 185-265 450-518 (558)
148 KOG1320|consensus 93.8 0.096 2.1E-06 60.2 5.9 57 46-105 398-456 (473)
149 COG3031 PulC Type II secretory 92.6 0.36 7.9E-06 50.5 7.3 72 175-262 195-268 (275)
150 cd01249 PH_oligophrenin Oligop 91.8 0.24 5.1E-06 45.8 4.5 42 313-354 61-102 (104)
151 COG3031 PulC Type II secretory 91.5 0.58 1.3E-05 49.0 7.4 67 27-108 200-268 (275)
152 cd01239 PH_PKD Protein kinase 91.1 0.72 1.6E-05 43.3 6.9 79 457-545 12-117 (117)
153 cd01251 PH_centaurin_alpha Cen 91.0 0.38 8.3E-06 44.1 5.0 36 322-359 67-102 (103)
154 cd01249 PH_oligophrenin Oligop 88.7 3.3 7.1E-05 38.4 9.1 37 504-542 64-101 (104)
155 cd01218 PH_phafin2 Phafin2 Pl 88.6 3.2 7E-05 38.4 9.1 84 461-550 18-102 (104)
156 cd01244 PH_RasGAP_CG9209 RAS_G 88.3 1.1 2.4E-05 41.0 5.8 54 300-355 43-97 (98)
157 cd01236 PH_outspread Outspread 88.0 1.2 2.7E-05 41.1 6.0 52 302-355 51-102 (104)
158 cd01252 PH_cytohesin Cytohesin 87.9 1.5 3.3E-05 41.4 6.7 57 301-359 40-115 (125)
159 PF12812 PDZ_1: PDZ-like domai 87.7 1.6 3.4E-05 38.4 6.1 46 201-249 31-76 (78)
160 KOG0790|consensus 87.5 0.034 7.4E-07 62.2 -5.4 72 315-386 269-346 (600)
161 cd01245 PH_RasGAP_CG5898 RAS G 87.3 1.6 3.6E-05 39.9 6.2 52 302-355 45-97 (98)
162 cd01247 PH_GPBP Goodpasture an 86.8 1.5 3.3E-05 39.3 5.7 50 301-355 41-90 (91)
163 KOG4371|consensus 86.5 0.73 1.6E-05 56.6 4.5 88 17-105 1242-1329(1332)
164 KOG3834|consensus 86.5 2.8 6.1E-05 47.4 8.7 89 12-103 69-165 (462)
165 cd01260 PH_CNK Connector enhan 85.9 1.5 3.2E-05 39.3 5.1 37 319-356 60-96 (96)
166 PF00169 PH: PH domain; Inter 85.8 2.3 5E-05 37.0 6.4 38 319-357 66-103 (104)
167 COG5599 PTP2 Protein tyrosine 85.7 0.054 1.2E-06 57.4 -4.8 64 317-389 52-117 (302)
168 PTZ00267 NIMA-related protein 85.6 2.2 4.8E-05 49.3 7.8 84 458-546 389-476 (478)
169 cd01265 PH_PARIS-1 PARIS-1 ple 85.3 2.1 4.5E-05 38.7 5.9 51 301-356 43-93 (95)
170 cd01220 PH_CDEP Chondrocyte-de 84.2 2.5 5.5E-05 38.7 5.9 54 302-358 45-98 (99)
171 PF12812 PDZ_1: PDZ-like domai 84.2 2.3 5E-05 37.3 5.4 46 47-95 31-76 (78)
172 cd01233 Unc104 Unc-104 pleckst 84.0 1.9 4E-05 39.3 5.0 36 321-358 64-99 (100)
173 cd01230 PH_EFA6 EFA6 Pleckstri 82.9 2.7 5.9E-05 39.7 5.7 41 319-360 74-114 (117)
174 cd01219 PH_FGD FGD (faciogenit 82.6 2.7 5.9E-05 38.3 5.5 37 320-358 64-100 (101)
175 cd01246 PH_oxysterol_bp Oxyste 82.1 2.7 5.8E-05 36.5 5.1 35 321-356 57-91 (91)
176 cd01257 PH_IRS Insulin recepto 81.4 3.3 7.2E-05 38.1 5.6 50 301-354 49-99 (101)
177 KOG0792|consensus 80.6 0.69 1.5E-05 57.1 1.0 67 30-96 714-799 (1144)
178 KOG4407|consensus 80.4 0.77 1.7E-05 57.5 1.3 58 46-104 143-200 (1973)
179 COG0750 Predicted membrane-ass 80.2 3.3 7.3E-05 46.2 6.3 54 49-104 132-188 (375)
180 PF15410 PH_9: Pleckstrin homo 80.0 3.6 7.7E-05 38.7 5.5 37 319-356 81-117 (119)
181 cd01238 PH_Tec Tec pleckstrin 79.4 3.9 8.5E-05 37.7 5.4 33 321-355 73-105 (106)
182 cd01250 PH_centaurin Centaurin 77.6 3.4 7.4E-05 36.1 4.3 33 321-355 61-93 (94)
183 cd01253 PH_beta_spectrin Beta- 75.7 4.3 9.4E-05 36.8 4.6 35 320-355 69-103 (104)
184 smart00233 PH Pleckstrin homol 75.3 6.1 0.00013 33.5 5.2 37 320-357 65-101 (102)
185 KOG0932|consensus 75.2 1.3 2.7E-05 51.5 1.0 85 457-548 528-621 (774)
186 cd01272 FE65_N Fe65 Phosphotyr 73.2 21 0.00045 34.4 8.4 65 462-532 53-118 (138)
187 cd01231 PH_Lnk LNK-family Plec 71.9 20 0.00044 33.1 7.7 83 456-544 16-106 (107)
188 cd01226 PH_exo84 Exocyst compl 71.0 9 0.0002 35.3 5.3 53 490-546 45-98 (100)
189 KOG2921|consensus 70.9 2.3 5.1E-05 47.5 1.8 54 38-93 212-265 (484)
190 cd00900 PH-like Pleckstrin hom 70.5 7.9 0.00017 32.7 4.8 36 320-355 62-98 (99)
191 PHA02747 protein tyrosine phos 70.3 0.15 3.2E-06 56.1 -7.6 67 316-388 49-117 (312)
192 COG0750 Predicted membrane-ass 69.9 12 0.00026 41.7 7.3 53 203-258 132-188 (375)
193 cd01235 PH_SETbf Set binding f 69.4 7.7 0.00017 34.6 4.6 35 321-357 67-101 (101)
194 PHA02742 protein tyrosine phos 68.0 0.16 3.4E-06 55.7 -8.1 64 317-387 51-116 (303)
195 KOG2921|consensus 67.3 8.5 0.00018 43.3 5.1 47 199-247 219-265 (484)
196 KOG4228|consensus 66.5 0.57 1.2E-05 58.3 -4.4 68 315-387 562-631 (1087)
197 cd01218 PH_phafin2 Phafin2 Pl 66.4 19 0.0004 33.4 6.5 39 321-361 64-102 (104)
198 cd00821 PH Pleckstrin homology 66.1 11 0.00024 31.5 4.8 35 320-355 61-95 (96)
199 PF12814 Mcp5_PH: Meiotic cell 61.8 1.1E+02 0.0023 29.0 11.0 83 459-545 28-120 (123)
200 KOG3640|consensus 61.7 12 0.00026 46.3 5.3 87 459-547 1006-1107(1116)
201 cd01225 PH_Cool_Pix Cool (clon 61.3 19 0.00042 33.7 5.5 56 301-358 55-110 (111)
202 PHA02746 protein tyrosine phos 60.7 0.27 5.8E-06 54.4 -8.0 67 316-387 49-136 (323)
203 cd01261 PH_SOS Son of Sevenles 60.3 20 0.00044 33.6 5.6 38 320-358 73-110 (112)
204 cd01261 PH_SOS Son of Sevenles 59.6 30 0.00065 32.6 6.6 35 509-546 75-109 (112)
205 KOG4424|consensus 58.0 1.4E+02 0.003 35.6 12.8 83 457-548 509-597 (623)
206 cd00934 PTB Phosphotyrosine-bi 57.5 1.1E+02 0.0025 27.8 10.3 81 458-550 38-119 (123)
207 PLN02866 phospholipase D 55.5 61 0.0013 41.2 10.1 81 457-547 214-308 (1068)
208 cd01223 PH_Vav Vav pleckstrin 53.9 20 0.00044 33.9 4.5 40 322-361 76-115 (116)
209 KOG0930|consensus 52.4 34 0.00074 37.0 6.3 45 319-363 317-381 (395)
210 cd01216 Fe65 Fe65 Phosphotyros 51.6 1.5E+02 0.0032 28.3 10.0 69 458-533 36-104 (123)
211 PF15413 PH_11: Pleckstrin hom 51.4 18 0.00039 33.7 3.8 31 324-356 82-112 (112)
212 cd01237 Unc112 Unc-112 pleckst 51.3 48 0.001 31.0 6.4 37 320-356 64-102 (106)
213 PF15409 PH_8: Pleckstrin homo 51.0 39 0.00085 30.5 5.6 49 301-356 40-88 (89)
214 cd01241 PH_Akt Akt pleckstrin 49.1 28 0.00062 31.7 4.6 38 319-356 62-101 (102)
215 cd01222 PH_clg Clg (common-sit 48.7 46 0.00099 30.5 5.8 37 321-357 58-95 (97)
216 cd01266 PH_Gab Gab (Grb2-assoc 46.9 28 0.0006 32.0 4.2 31 322-354 75-105 (108)
217 PLN00188 enhanced disease resi 46.2 97 0.0021 37.9 9.5 86 458-547 20-110 (719)
218 PF11874 DUF3394: Domain of un 45.8 29 0.00062 35.5 4.4 38 33-74 112-149 (183)
219 KOG3531|consensus 44.5 13 0.00028 45.5 1.9 83 458-546 937-1019(1036)
220 KOG0793|consensus 44.5 1.4 3.1E-05 52.2 -5.6 68 317-388 758-827 (1004)
221 PF14593 PH_3: PH domain; PDB: 43.6 1.5E+02 0.0033 27.5 8.5 74 461-547 27-100 (104)
222 cd01225 PH_Cool_Pix Cool (clon 40.3 1.3E+02 0.0028 28.4 7.3 78 462-544 29-107 (111)
223 KOG0521|consensus 39.8 35 0.00076 42.4 4.7 42 320-363 333-374 (785)
224 KOG0521|consensus 39.6 34 0.00074 42.5 4.6 82 457-551 287-373 (785)
225 smart00462 PTB Phosphotyrosine 39.3 3.2E+02 0.0069 25.4 10.9 71 457-533 39-110 (134)
226 PTZ00283 serine/threonine prot 39.2 72 0.0016 37.3 7.1 35 509-546 455-489 (496)
227 KOG3751|consensus 38.2 72 0.0016 37.4 6.5 87 456-545 328-423 (622)
228 PHA02738 hypothetical protein; 37.2 0.92 2E-05 50.1 -8.5 63 318-387 49-113 (320)
229 cd01254 PH_PLD Phospholipase D 37.1 55 0.0012 30.9 4.7 34 321-356 88-121 (121)
230 cd01222 PH_clg Clg (common-sit 34.2 1.1E+02 0.0024 28.0 6.0 42 504-546 54-95 (97)
231 KOG0248|consensus 33.9 48 0.001 40.0 4.3 103 432-547 235-342 (936)
232 KOG2059|consensus 31.5 44 0.00096 40.4 3.6 88 458-555 583-673 (800)
233 PHA02740 protein tyrosine phos 30.8 1.8 3.8E-05 47.5 -7.5 56 323-388 58-115 (298)
234 cd01224 PH_Collybistin Collybi 29.5 93 0.002 29.2 4.7 34 322-355 72-105 (109)
235 cd01221 PH_ephexin Ephexin Ple 29.3 67 0.0015 30.9 3.8 35 508-542 82-118 (125)
236 TIGR02171 Fb_sc_TIGR02171 Fibr 28.1 32 0.00069 43.0 1.7 20 727-746 501-520 (912)
237 smart00194 PTPc Protein tyrosi 28.0 1.5 3.2E-05 46.5 -8.6 65 317-387 26-92 (258)
238 cd08548 Type_I_cohesin_like Ty 27.3 3.5E+02 0.0076 26.0 8.5 62 675-741 12-80 (135)
239 cd01263 PH_anillin Anillin Ple 25.7 95 0.0021 29.7 4.1 21 335-355 101-121 (122)
240 KOG1117|consensus 23.3 1.3E+02 0.0028 37.5 5.4 137 321-546 143-279 (1186)
241 cd01227 PH_Dbs Dbs (DBL's big 22.8 3.2E+02 0.0069 26.6 7.2 38 321-358 79-116 (133)
242 cd01248 PH_PLC Phospholipase C 22.4 1.7E+02 0.0037 27.1 5.2 34 510-543 80-113 (115)
243 cd01231 PH_Lnk LNK-family Plec 22.2 1.7E+02 0.0036 27.3 4.8 33 321-354 73-105 (107)
244 cd01202 FRS2 Fibroblast growth 22.0 4.7E+02 0.01 24.4 7.6 72 460-545 19-94 (102)
245 KOG1703|consensus 21.8 34 0.00075 40.0 0.5 72 33-106 9-80 (479)
246 cd01232 PH_TRIO Trio pleckstri 21.5 2.8E+02 0.0061 26.1 6.4 49 310-358 53-113 (114)
247 PF10246 MRP-S35: Mitochondria 21.0 47 0.001 30.8 1.1 10 735-744 38-47 (104)
248 cd01256 PH_dynamin Dynamin ple 20.4 2.5E+02 0.0054 26.2 5.4 37 317-353 59-101 (110)
249 PF15406 PH_6: Pleckstrin homo 20.4 1.8E+02 0.0039 27.4 4.7 67 465-543 43-110 (112)
250 KOG0248|consensus 20.4 1.9E+02 0.0041 35.3 5.9 133 335-547 319-466 (936)
251 cd08966 EcFpg-like_N N-termina 20.3 1.1E+02 0.0025 28.4 3.6 58 691-749 59-118 (120)
No 1
>KOG3551|consensus
Probab=100.00 E-value=1.6e-118 Score=938.79 Aligned_cols=478 Identities=46% Similarity=0.765 Sum_probs=427.3
Q ss_pred ccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCC--CCCCCcCCCCCCCCCccccceEEEEEecc
Q psy4897 106 YGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT--VDSISSFMDTVDIPDSVENQKRIIRVKKS 183 (774)
Q Consensus 106 ~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~--~~s~s~~~~s~~~pe~~~~~~r~V~L~k~ 183 (774)
..+++.++..++++|+++..+|.++.++++.-+....++...|..++|. ..-..+.....++|+......|.|++.|+
T Consensus 14 a~raGl~~~~~~~rW~rVl~~L~~~altls~~~~~~~~~~ga~~~~~~~~~~g~~~~~~~p~~~p~~~~~~~R~V~V~K~ 93 (506)
T KOG3551|consen 14 AVRAGLVEILVRERWHRVLATLSEDALTLSELEGALGPAAGAGDSQPPSPSRGLGPPSPAPPQMPENEAEAERRVRVVKQ 93 (506)
T ss_pred HHhhhHHHHHhhhhHHHHHhhcCcceeEeeeccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCchhhhcccceeEEEEe
Confidence 3456677788899999999999999998886554333333222222221 11122233445667777778899999999
Q ss_pred CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecccc
Q psy4897 184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263 (774)
Q Consensus 184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~~ 263 (774)
+.++|||+|+||+++++||+|++|++|.+|++++.|+.||.|++|||.++.+++|+|+|+.||.+|++|.|.|+++++++
T Consensus 94 d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy~REvt 173 (506)
T KOG3551|consen 94 DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKYMREVT 173 (506)
T ss_pred cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeeeehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccccCCCCC-CCCCCCCCCC---CCCCCcCcccceeeEeeecccccCCCCceEEEecCCCceeEEEe
Q psy4897 264 PYFRKASIISEVGWELQRGFLS-DSPPSPSPQS---SQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILR 339 (774)
Q Consensus 264 ~~~~~~~~~~~l~w~~~~~~~~-~~~~~~~~~~---~~~~~~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr 339 (774)
||+++.+++++++|+.+.++++ ..++..+|++ +...|.+.+|++|||++|++..+|++||+||||++|+++++|||
T Consensus 174 Py~kk~sivs~vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR 253 (506)
T KOG3551|consen 174 PYFKKESIVSEVGWEDPAPQSPSLGGSEDSPSPKHINFRKDRKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILR 253 (506)
T ss_pred hhhccCccccccCcCCCCccCcccCCCCCCCCCCcccccccccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEE
Confidence 9999999999999999877765 2233322222 34678999999999999999999999999999999999999999
Q ss_pred eCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCCCCCceEEEEcceeccCCCccccCCCCCCCCCCCCCCcceeeec
Q psy4897 340 ASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFG 419 (774)
Q Consensus 340 ~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~~~~~~~~~mGWl~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 419 (774)
|+|.+++..||+|||+||..|+++++++.|++|+. ..+++|||||+||++++
T Consensus 254 ~kdsa~A~~Wf~AiHa~v~~ll~rvlaE~n~~Lg~--t~evkHiGWLaeq~~~~-------------------------- 305 (506)
T KOG3551|consen 254 AKDSAEADSWFEAIHANVNTLLTRVLAEVNAMLGN--TSEVKHIGWLAEQVSGG-------------------------- 305 (506)
T ss_pred ccCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc--ccchhhhhhHHhhccCC--------------------------
Confidence 99999999999999999999999999999999996 34999999999999875
Q ss_pred chhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEe
Q psy4897 420 AVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTR 499 (774)
Q Consensus 420 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r 499 (774)
+.++|+|+|++||++||+||+++||++|+|++|.++|||++||
T Consensus 306 -------------------------------------G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTR 348 (506)
T KOG3551|consen 306 -------------------------------------GISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATR 348 (506)
T ss_pred -------------------------------------ChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999
Q ss_pred eeccC-----CCCCc-EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHHHHHHhccceEEEEEecCeeeEEEEEe
Q psy4897 500 LVSSS-----RHSDV-IVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRGQPSQLIVNY 573 (774)
Q Consensus 500 ~~~~s-----~~~~~-~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~l~~~~ 573 (774)
|||+. +..+. ++|++||||+|||++|+||||||+||++|+|+||||||.|++.++|+|++|+||||+|+|+|||
T Consensus 349 Lvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~Aae~~~EvS~~Cl~~G~~C~L~Vhi 428 (506)
T KOG3551|consen 349 LVHSGSGKGSVIKGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEAAELISEVSTACLWNGRECRLTVHI 428 (506)
T ss_pred heecCCCCCCCcCCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecCceEEEEEEe
Confidence 99973 33333 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEeecccCCCCCCCceeecccccccccccccCceeEEEeeCC-CceeEeccCCCCCCCCCceeehh-hhHhhhhhc
Q psy4897 574 DFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGS-DLSLQDKIRPGRESNPRSSAYKA-DALQTKLTR 651 (774)
Q Consensus 574 ~~gf~l~~~~~~~~~~~~~~l~~~~f~~l~~ssddg~~~l~l~f~~-~~~~~~~~~~~~~~~~~~~~f~~-~fl~akv~~ 651 (774)
|+||+|+++. .|..+++|||||||+||||||||.+|||||||+ |||||| ||||||||||||| |||||||+|
T Consensus 429 dnGfsl~~~~---~g~a~~vL~q~pFEkLkmSsDDG~r~LyLDFGg~dGEiqL----DLhscpKpiVFIlHsfLSAKVtr 501 (506)
T KOG3551|consen 429 DNGFSLLSEE---TGAAREVLWQHPFEKLKMSSDDGARMLYLDFGGPDGEIQL----DLHSCPKPIVFILHSFLSAKVTR 501 (506)
T ss_pred cCCeEEEecC---CCcchhhhhhChHHHhccccCCCceEEEEecCCCCccEEe----eeccCCCcEEEEehhhhhhhhhh
Confidence 9999999984 688999999999999999999999999999998 999999 9999999999999 999999999
Q ss_pred cCcc
Q psy4897 652 VGSG 655 (774)
Q Consensus 652 ~~~~ 655 (774)
+|+.
T Consensus 502 lgL~ 505 (506)
T KOG3551|consen 502 LGLL 505 (506)
T ss_pred heec
Confidence 9984
No 2
>KOG3549|consensus
Probab=100.00 E-value=7.2e-88 Score=699.02 Aligned_cols=420 Identities=27% Similarity=0.418 Sum_probs=382.1
Q ss_pred cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897 171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 250 (774)
Q Consensus 171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~ 250 (774)
.....|+|+++++..++||++|+||.+++.|++|++|.++.+|+..|.|.+||.|++|||+.|..++|+|+|++|+++|+
T Consensus 51 ~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd 130 (505)
T KOG3549|consen 51 MESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD 130 (505)
T ss_pred ccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecccccccccCc----ccccccccccC-CCCC-----------------CCCCCCCCCCCCCCCcCccccee
Q psy4897 251 LVELEVKYLREVTPYFRKAS----IISEVGWELQR-GFLS-----------------DSPPSPSPQSSQRADTRYLPLQL 308 (774)
Q Consensus 251 ~V~L~V~R~~~~~~~~~~~~----~~~~l~w~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~ipl~~ 308 (774)
+|+|+|+..+.+.+|++.+- +.++.....++ .+++ .|.+..+.+.++|+|...+|++|
T Consensus 131 eVtlTV~~lr~ApaFLklpL~~~~p~SD~ssg~sspl~DsGlhln~ns~T~s~Scss~P~s~~~r~EKRW~D~~~vPL~m 210 (505)
T KOG3549|consen 131 EVTLTVKHLRAAPAFLKLPLTKDTPDSDNSSGCSSPLADSGLHLNVNSGTISRSCSSSPMSICSRPEKRWTDVVAVPLMM 210 (505)
T ss_pred EEEEEeHhhhcCcHHhcCccCCCCCCccccccccccccccceeecccCCCccCCCCCCCCCCCCchhhhhhhhhhhHHHH
Confidence 99999999999999998652 11221111111 1111 11122334557899999999999
Q ss_pred eEeeecccccCC-CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCCCCCceEEEEcc
Q psy4897 309 CYLVRNYKHYDS-ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLA 387 (774)
Q Consensus 309 ~~l~R~~~~~d~-r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~~~~~~~~~mGWl~ 387 (774)
++++||.+++|. |.+.||+...||..+.||||...+...+|++||..||..|+.+.|+++|+++++ .++|.||||++
T Consensus 211 ar~srY~~GTdklRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~LT~~nmK~~Nrnf~v--~~qivyMGWvn 288 (505)
T KOG3549|consen 211 ARVSRYIYGTDKLRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVGLTHLNMKLYNRNFAV--GEQIVYMGWVN 288 (505)
T ss_pred HHHHhhccCchhhhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cceEEEeeecc
Confidence 999999999999 999999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred eeccCCCccccCCCCCCCCCCCCCCcceeeecchhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEE
Q psy4897 388 RKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGA 467 (774)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 467 (774)
|+..+. ++++.++|+|++
T Consensus 289 e~~q~~--------------------------------------------------------------~s~q~y~P~FLa 306 (505)
T KOG3549|consen 289 EGVQNN--------------------------------------------------------------ISWQSYKPRFLA 306 (505)
T ss_pred ccccCc--------------------------------------------------------------ccccccCceeEE
Confidence 999875 267999999999
Q ss_pred eccceeEEecCCCCChhcccCcccccceeeE--eeeccCCCCCc--EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHH
Q psy4897 468 VTERELRLYESAPWSPEAWSTPAHVFPLVST--RLVSSSRHSDV--IVFSVRCGTPQGVATHHLRAETHRDLANWARTLV 543 (774)
Q Consensus 468 l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~--r~~~~s~~~~~--~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~ 543 (774)
|||.++|+|++||.+.++|++++.+|.+|+| |+++.|+..|. |||.++.+. .++|||+||+..||++|+++++
T Consensus 307 LkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~---ge~~yfsVEl~seLa~wE~sfq 383 (505)
T KOG3549|consen 307 LKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSG---GEPRYFSVELRSELARWENSFQ 383 (505)
T ss_pred ecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccceEEEEcCC---CCceEEEEehhhHHHHHHHHHh
Confidence 9999999999999999999999999999998 79999888886 999999994 4999999999999999999999
Q ss_pred HHHHHHHHhccceEEEEEecCeeeEEEEEecCceEEeecccCCCCCCCceeecccccccccccccCceeEEEeeCC-C-c
Q psy4897 544 QATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGS-D-L 621 (774)
Q Consensus 544 ~~~~~~~~~~~~~~~~c~~~~~~~~l~~~~~~gf~l~~~~~~~~~~~~~~l~~~~f~~l~~ssddg~~~l~l~f~~-~-~ 621 (774)
.|++++|++++.+||+|+|+|+..+|||||..||+|+++ +++++||||||+|||+|||||+++|+|.|++ | .
T Consensus 384 ~Atf~eV~r~g~kTyacs~~g~~~glT~Df~~GF~cfe~------atkavlWryKFSQLkGSSDDGKsk~KllFQn~Dtk 457 (505)
T KOG3549|consen 384 AATFTEVIRLGRKTYACSHHGKSGGLTLDFQAGFSCFEG------ATKAVLWRYKFSQLKGSSDDGKSKLKLLFQNHDTK 457 (505)
T ss_pred hHHhHHHhhhcCceEEEEeccccccEEEEeccCceeecc------cchhhheeeeHhhccCCCCCcchheeEeeeCCchh
Confidence 999999999999999999999999999999999999965 6899999999999999999999999999999 6 8
Q ss_pred eeEeccCCCCCCCCC-ceeehh-hhHhhhhhccCcchhhhhHHHHHH
Q psy4897 622 SLQDKIRPGRESNPR-SSAYKA-DALQTKLTRVGSGVLSQAAGVHIA 666 (774)
Q Consensus 622 ~~~~~~~~~~~~~~~-~~~f~~-~fl~akv~~~~~~~~~~~~~~~~a 666 (774)
+||+| +||+... .|+||| +||+|||+++||+||++++-+.-|
T Consensus 458 qIE~K---ELEfq~L~avLhCiHsF~aAKVAsvDP~Fl~sq~~a~k~ 501 (505)
T KOG3549|consen 458 QIETK---ELEFQVLQAVLHCIHSFLAAKVASVDPAFLSSQQQARKA 501 (505)
T ss_pred hhhhh---hhhHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHhhh
Confidence 99997 9999998 699999 999999999999999999877654
No 3
>KOG3551|consensus
Probab=99.97 E-value=7.9e-33 Score=292.32 Aligned_cols=219 Identities=27% Similarity=0.408 Sum_probs=139.6
Q ss_pred EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHHH-------HHHhccceEEE----------EEecCe---eeEE
Q psy4897 510 IVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHS-------CVLNQRQVSVR----------CMYRGQ---PSQL 569 (774)
Q Consensus 510 ~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~~-------~~~~~~~~~~~----------c~~~~~---~~~l 569 (774)
-+|.+++++ |.-+.++|+.+..+--.|-.+|+.++.. .|+.+=-.+-. ..-.|. .=.|
T Consensus 237 R~lEihSpd--g~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~rvlaE~n~~Lg~t~evkHiGWLaeq~~~~G~~~w~P~l 314 (506)
T KOG3551|consen 237 RQLEIHSPD--GRHTLILRAKDSAEADSWFEAIHANVNTLLTRVLAEVNAMLGNTSEVKHIGWLAEQVSGGGISQWKPKL 314 (506)
T ss_pred ceeeeeCCC--CcceEEEEccCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHhhccCCChhhhhhhe
Confidence 688998775 7789999999988888998888766421 22221111111 111120 1123
Q ss_pred EEEecCceEEeecccCCCCCCCceeeccccc--ccccccccCc---eeEEEeeCC-Cc---eeEeccCCCCCCCCCceee
Q psy4897 570 IVNYDFGFRLLEATAGSMGREPKILWTYPFE--RLRMSSDDGV---KLLWLDFGS-DL---SLQDKIRPGRESNPRSSAY 640 (774)
Q Consensus 570 ~~~~~~gf~l~~~~~~~~~~~~~~l~~~~f~--~l~~ssddg~---~~l~l~f~~-~~---~~~~~~~~~~~~~~~~~~f 640 (774)
..--++-|-+|++-+-....-..++-.||.- +|..|+-.-. .-+-|.|-- .| -+++ -+|
T Consensus 315 ~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~t------------hlf 382 (506)
T KOG3551|consen 315 MALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVET------------HLF 382 (506)
T ss_pred eeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEE------------EEE
Confidence 3334555666665210001112344556642 3333332111 111133321 11 1111 111
Q ss_pred hh---hhHhhhhhccCcchhhhhHHHHHHHHhcccCcceeeeeeeeeecCceeEEEEEecCCeEEEeccCCCCCCCCeee
Q psy4897 641 KA---DALQTKLTRVGSGVLSQAAGVHIAQLSLGENSQTRTFHMRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKIL 717 (774)
Q Consensus 641 ~~---~fl~akv~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 717 (774)
-. .=|+|=+ | +..+|||+||.++.|+| ++|+||||+|+|+|||||||+|++++.|. .+++|
T Consensus 383 rvEThrdLa~Wt-R------slVqGch~Aae~~~EvS------~~Cl~~G~~C~L~VhidnGfsl~~~~~g~---a~~vL 446 (506)
T KOG3551|consen 383 RVETHRELAAWT-R------SLVQGCHEAAELISEVS------TACLWNGRECRLTVHIDNGFSLLSEETGA---AREVL 446 (506)
T ss_pred EeccHHHHHHHH-H------HHHHHHHHHHHHHHhhh------hhheecCceEEEEEEecCCeEEEecCCCc---chhhh
Confidence 11 1222222 1 45789999999999999 99999999999999999999999987544 47899
Q ss_pred eeccccccccccccCceEEEEecCCCcceeEEeecCCCcce
Q psy4897 718 WTYPFERLRMSSDDGVKLLWLDFGSEEGEMRLRMSSDDGVK 758 (774)
Q Consensus 718 ~~~~~~~~~~~~dd~~~~~~~~f~~~~~~~~~~~~~~~~~~ 758 (774)
|||||||||||+|||.|||||||||++||||||||||..--
T Consensus 447 ~q~pFEkLkmSsDDG~r~LyLDFGg~dGEiqLDLhscpKpi 487 (506)
T KOG3551|consen 447 WQHPFEKLKMSSDDGARMLYLDFGGPDGEIQLDLHSCPKPI 487 (506)
T ss_pred hhChHHHhccccCCCceEEEEecCCCCccEEeeeccCCCcE
Confidence 99999999999999999999999999999999999998643
No 4
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.96 E-value=1.2e-29 Score=231.39 Aligned_cols=87 Identities=45% Similarity=0.736 Sum_probs=81.1
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCccccccee--eEeeeccCCCCC---c--EEEEEEeCCCCceeeEEEEe
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLV--STRLVSSSRHSD---V--IVFSVRCGTPQGVATHHLRA 529 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~--~~r~~~~s~~~~---~--~~f~~~~~t~~g~~~~~~~~ 529 (774)
..++|+|+|+||||+|||+|++||+++++|++|+++|||+ +|||+++++..| . +||+||+|++ |++|+|||
T Consensus 15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~--vesh~fsV 92 (108)
T cd01258 15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQ--VENHYLRV 92 (108)
T ss_pred cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCc--eeeEEEEe
Confidence 4689999999999999999999999999999999999999 899999755555 3 9999999986 99999999
Q ss_pred cChhHHHHHHHHHHHH
Q psy4897 530 ETHRDLANWARTLVQA 545 (774)
Q Consensus 530 et~~dl~~w~~~l~~~ 545 (774)
||++||+.|+|+||+|
T Consensus 93 Et~~dL~~W~raiv~g 108 (108)
T cd01258 93 ETHRDLASWERALVRG 108 (108)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999999985
No 5
>KOG3209|consensus
Probab=99.93 E-value=4.8e-25 Score=246.76 Aligned_cols=231 Identities=23% Similarity=0.304 Sum_probs=163.8
Q ss_pred CCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce
Q psy4897 18 SRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV 97 (774)
Q Consensus 18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~ 97 (774)
....|.|.|+|++|+||||.|......+. --|.+|.+||||+++|+|++||+|++|||++|.+++|...|+++|.+|-.
T Consensus 751 ~~~~yDV~lhR~ENeGFGFVi~sS~~kp~-sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGls 829 (984)
T KOG3209|consen 751 PSGPYDVVLHRKENEGFGFVIMSSQNKPE-SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLS 829 (984)
T ss_pred CCCCeeeEEecccCCceeEEEEecccCCC-CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCce
Confidence 34489999999999999999998766542 22999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEE
Q psy4897 98 VELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI 177 (774)
Q Consensus 98 V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~ 177 (774)
|+|+|...............+...+....-...+ ....+.. .....+....|....... ..-.......-.+
T Consensus 830 VtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q-~~glp~~---~~s~~~~~pqpdt~~~~~----~~~r~~qn~~~~~ 901 (984)
T KOG3209|consen 830 VTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQ-QYGLPGP---RPSVYEEHPQPDTFQGLS----INDRMSQNGDLYT 901 (984)
T ss_pred EEEEEcChhccCCCCCCcchhhcCcccccCCHhH-ccCCCCC---CccccccCCCCcccccee----ccccccccCCeeE
Confidence 9999976432211111111110000000000000 0000000 000011111110000000 0000122334678
Q ss_pred EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257 (774)
Q Consensus 178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~ 257 (774)
|++.+ +..+|||+|+||++.++++||-++..++||.++|++++||+|++|||++.++++|+.++++||+.+..|.|.++
T Consensus 902 VelEr-G~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr 980 (984)
T KOG3209|consen 902 VELER-GAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLR 980 (984)
T ss_pred EEeec-cccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEec
Confidence 88887 57899999999999999999999999999999999999999999999999999999999999999888888876
Q ss_pred E
Q psy4897 258 Y 258 (774)
Q Consensus 258 R 258 (774)
|
T Consensus 981 ~ 981 (984)
T KOG3209|consen 981 R 981 (984)
T ss_pred c
Confidence 5
No 6
>KOG3209|consensus
Probab=99.88 E-value=6.8e-22 Score=221.72 Aligned_cols=192 Identities=28% Similarity=0.394 Sum_probs=155.8
Q ss_pred CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--Cce
Q psy4897 20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKV 97 (774)
Q Consensus 20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~ 97 (774)
+-.+|.| ++...||||.|-||.+.+.+|+|..|.+.++|+++|+|+.||.|+.|||++|.+.+|.+++.++..+ ...
T Consensus 649 k~ldV~L-~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArngh 727 (984)
T KOG3209|consen 649 KELDVFL-RRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGH 727 (984)
T ss_pred cceeEEE-EeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCc
Confidence 4455666 5566799999999999999999999999999999999999999999999999999999999999976 447
Q ss_pred EEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEE
Q psy4897 98 VELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI 177 (774)
Q Consensus 98 V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~ 177 (774)
|.|+|.|...- + . ... ++.. ......++.
T Consensus 728 V~LtVRRkv~~-~-------~------------------~~r-------------------sp~~------s~~~~~~yD 756 (984)
T KOG3209|consen 728 VNLTVRRKVRT-G-------P------------------ARR-------------------SPRN------SAAPSGPYD 756 (984)
T ss_pred eEEEEeeeeee-c-------c------------------ccC-------------------Cccc------ccCCCCCee
Confidence 99999875311 0 0 000 0000 001123677
Q ss_pred EEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257 (774)
Q Consensus 178 V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~ 257 (774)
|.|.+.++.+|||.|..... +.+--|.+|.+||||+++|+|++||+|++|||+++.+++|.++|++||.+|-.|+|+|.
T Consensus 757 V~lhR~ENeGFGFVi~sS~~-kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIi 835 (984)
T KOG3209|consen 757 VVLHRKENEGFGFVIMSSQN-KPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTII 835 (984)
T ss_pred eEEecccCCceeEEEEeccc-CCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEc
Confidence 88999999999999865432 33334999999999999999999999999999999999999999999999999999998
Q ss_pred Eeccccc
Q psy4897 258 YLREVTP 264 (774)
Q Consensus 258 R~~~~~~ 264 (774)
...+..+
T Consensus 836 p~ee~~~ 842 (984)
T KOG3209|consen 836 PPEEAGP 842 (984)
T ss_pred ChhccCC
Confidence 6655443
No 7
>KOG3549|consensus
Probab=99.85 E-value=1.1e-21 Score=205.79 Aligned_cols=309 Identities=24% Similarity=0.302 Sum_probs=194.5
Q ss_pred CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897 19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV 98 (774)
Q Consensus 19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V 98 (774)
..-++|++.|+.-+|||++|+||.+.+.+++|++|.++-+|+..|.|.+||.|++|||+.|+.++|+++|++|+++|+.|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV 132 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEE
Q psy4897 99 ELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRII 178 (774)
Q Consensus 99 ~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V 178 (774)
+|+|..-..-...+. ..|..+..........++|...+|...+-+....++..++.|.......++|..
T Consensus 133 tlTV~~lr~ApaFLk-----------lpL~~~~p~SD~ssg~sspl~DsGlhln~ns~T~s~Scss~P~s~~~r~EKRW~ 201 (505)
T KOG3549|consen 133 TLTVKHLRAAPAFLK-----------LPLTKDTPDSDNSSGCSSPLADSGLHLNVNSGTISRSCSSSPMSICSRPEKRWT 201 (505)
T ss_pred EEEeHhhhcCcHHhc-----------CccCCCCCCccccccccccccccceeecccCCCccCCCCCCCCCCCCchhhhhh
Confidence 999953211111111 111111110000011111112222111111111111112222222333344444
Q ss_pred EEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCC-CCEEEEECCeecCC---CCHHHHHHHHHH-cCcceE
Q psy4897 179 RVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLRE---ATHDEAVKALKR-AGKLVE 253 (774)
Q Consensus 179 ~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~-GD~IlaVNG~~V~~---~t~~e~v~~Lk~-~g~~V~ 253 (774)
.+.. .|+.+++|.+--+.-. .|+- -=+++++||+...- .+.++..++|+. ..+.+.
T Consensus 202 D~~~-----------------vPL~mar~srY~~GTd--klRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~ 262 (505)
T KOG3549|consen 202 DVVA-----------------VPLMMARVSRYIYGTD--KLRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVG 262 (505)
T ss_pred hhhh-----------------hHHHHHHHHhhccCch--hhhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHH
Confidence 3322 2333333322111111 1332 35788999988533 356777888887 567788
Q ss_pred EEEEEecccccccccCcccccccccccCC------------CCCCCCCC---CC-CCCCCCCCcC-----cccceeeEee
Q psy4897 254 LEVKYLREVTPYFRKASIISEVGWELQRG------------FLSDSPPS---PS-PQSSQRADTR-----YLPLQLCYLV 312 (774)
Q Consensus 254 L~V~R~~~~~~~~~~~~~~~~l~w~~~~~------------~~~~~~~~---~~-~~~~~~~~~~-----~ipl~~~~l~ 312 (774)
|+...++..+..+.....+.++||..+.. |..++++. +. ||...+.-.+ .+---||++.
T Consensus 263 LT~~nmK~~Nrnf~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~ 342 (505)
T KOG3549|consen 263 LTHLNMKLYNRNFAVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIV 342 (505)
T ss_pred HHHHHHHHHhcCCCccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHh
Confidence 88888888888787777889999966531 11133332 22 2222222222 1223688889
Q ss_pred ecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 313 RNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 313 R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
+.....|.|.+||-|.+..|.+ .++..+..+++.+|-|+.++++-
T Consensus 343 Kdsd~~D~R~~CF~~qs~~ge~-~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 343 KDSDTVDSRQHCFLLQSSGGEP-RYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred ccccccccccceEEEEcCCCCc-eEEEEehhhHHHHHHHHHhhHHh
Confidence 9888899999999999999985 44566777888888888777654
No 8
>KOG3580|consensus
Probab=99.81 E-value=4.5e-19 Score=195.79 Aligned_cols=234 Identities=21% Similarity=0.244 Sum_probs=157.2
Q ss_pred CCCcEEEEEEeecCCcccEEEEccCCCCC------CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy4897 18 SRDFYSENYKYTENNGLGISIKGGKENKM------PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91 (774)
Q Consensus 18 s~~~~~V~l~rk~~~gLGfsI~GG~e~~~------gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL 91 (774)
..+.++|+|.+.+..||||.|.||++++. .|+|+.|.||+||+ |.||.||+|+.|||++++++.|.-|++.|
T Consensus 6 IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqL 83 (1027)
T KOG3580|consen 6 IWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQL 83 (1027)
T ss_pred hhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHH
Confidence 46789999999999999999999999863 59999999999998 78999999999999999999999999999
Q ss_pred HhcCceEEEEeeecccccceeeeeecccee----eeeeecccccc-----cccccCCC--------C-----Cc------
Q psy4897 92 KRAGKVVELEVGVGYGRCGTLETYVRGQWY----KVFVSLEEDYI-----SITLDENY--------D-----NS------ 143 (774)
Q Consensus 92 k~ag~~V~L~V~R~~~ks~~~~~~~~~~~~----~~~~tL~~~~l-----sis~~~~~--------~-----~~------ 143 (774)
+++|+...++|.|...- .+....... +....-.++.. .......+ + .+
T Consensus 84 rksgK~A~ItvkRprkv----qvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~ 159 (1027)
T KOG3580|consen 84 RKSGKVAAITVKRPRKV----QVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPH 159 (1027)
T ss_pred HhhccceeEEeccccee----eccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcc
Confidence 99999999999875311 100000000 00000000000 00000000 0 00
Q ss_pred -ccccC--cCCCC----CCCCCCcCCCCCCCCCc-cccceEEEEEec-cCCCCcceEEeCCCCCCCCeEEEEecCCChhh
Q psy4897 144 -TVLNG--TLNSN----TVDSISSFMDTVDIPDS-VENQKRIIRVKK-SENNGLGISIKGGKENKMPILISKIFKGMAAD 214 (774)
Q Consensus 144 -t~~~g--~l~~p----~~~s~s~~~~s~~~pe~-~~~~~r~V~L~k-~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~ 214 (774)
...++ .+..+ ...+..-.....+.|+. ....+..+.|.| ..+..+|+.+. ..|||..|...+.|+
T Consensus 160 ~R~rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAa 233 (1027)
T KOG3580|consen 160 ERARSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAA 233 (1027)
T ss_pred ccccccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhccccc------chhhhhhhcccchhh
Confidence 00000 00100 00000000111122211 111223334433 35678888774 458999999999999
Q ss_pred hccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecccc
Q psy4897 215 QTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263 (774)
Q Consensus 215 ~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~~ 263 (774)
+.|+|+.||+|++|||+...+++..++..+|.++.+.+.|+|.|+...+
T Consensus 234 rdgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qt 282 (1027)
T KOG3580|consen 234 RDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQT 282 (1027)
T ss_pred ccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCce
Confidence 9999999999999999999999999999999999899999999987654
No 9
>KOG3580|consensus
Probab=99.63 E-value=4.1e-15 Score=164.88 Aligned_cols=236 Identities=21% Similarity=0.261 Sum_probs=154.1
Q ss_pred CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897 19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV 98 (774)
Q Consensus 19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V 98 (774)
..+..+.++++.++.||+.+. .-|||+.|...+.|++.|+|+.||.||.|||+..++++..++..++.++...+
T Consensus 198 ~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL 271 (1027)
T KOG3580|consen 198 GPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKL 271 (1027)
T ss_pred CcceEEEEeeccchhhccccc------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCce
Confidence 345556667788999999884 35999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccceeeeeeccceee--e---eeeccccccc-------cc----------ccCCCCC----cc--cccCcC
Q psy4897 99 ELEVGVGYGRCGTLETYVRGQWYK--V---FVSLEEDYIS-------IT----------LDENYDN----ST--VLNGTL 150 (774)
Q Consensus 99 ~L~V~R~~~ks~~~~~~~~~~~~~--~---~~tL~~~~ls-------is----------~~~~~~~----~t--~~~g~l 150 (774)
.|+|.|+..........+.+.... . ..+......+ .. ..+.+++ +. ...|..
T Consensus 272 ~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat 351 (1027)
T KOG3580|consen 272 QLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGAT 351 (1027)
T ss_pred EEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCC
Confidence 999999754332211111110000 0 0000000000 00 0000000 00 000000
Q ss_pred ----------CCCCCC--CCCcC---CCCCCCCC-----------------ccccceEEEEEeccCCCCcceEEeCCCCC
Q psy4897 151 ----------NSNTVD--SISSF---MDTVDIPD-----------------SVENQKRIIRVKKSENNGLGISIKGGKEN 198 (774)
Q Consensus 151 ----------~~p~~~--s~s~~---~~s~~~pe-----------------~~~~~~r~V~L~k~~~~~LGfsi~gg~~~ 198 (774)
...... ..++. ....+.|. ......++|...| +...|+.++|| +
T Consensus 352 ~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~K--GdSvGLRLAGG--N 427 (1027)
T KOG3580|consen 352 PTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKK--GDSVGLRLAGG--N 427 (1027)
T ss_pred CCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeec--CCeeeeEeccC--C
Confidence 000000 00000 00011111 0112345566555 67899999998 5
Q ss_pred CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecccccc
Q psy4897 199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREVTPY 265 (774)
Q Consensus 199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~~~~ 265 (774)
..||||+.|..|+||++.| |+.||+|+.||.++..++..+++|..|-. .|..|+|+.++..+++.-
T Consensus 428 DVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~ 495 (1027)
T KOG3580|consen 428 DVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRD 495 (1027)
T ss_pred ceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHH
Confidence 7899999999999999998 99999999999999999999999999887 778888888776665543
No 10
>KOG3605|consensus
Probab=99.62 E-value=1.2e-15 Score=171.03 Aligned_cols=178 Identities=21% Similarity=0.375 Sum_probs=149.1
Q ss_pred CccccccCCCccccccCCCCcEEEEEEeecCCcccEEEE-ccCCCCC-CeEEEEecCCCHHhhhCCCCCCCEEEEECCEe
Q psy4897 1 FRTQLVLGGPTEAFFFSSRDFYSENYKYTENNGLGISIK-GGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGED 78 (774)
Q Consensus 1 ~~~~l~~~~~~~~~~~~s~~~~~V~l~rk~~~gLGfsI~-GG~e~~~-gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~ 78 (774)
+++|-++|..++.| +++...++|.+.|..++.||+.|+ .|...-. .++|..+..++||+++|.|.+||+|++|||.+
T Consensus 627 lNsQei~gDeLe~F-akkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~S 705 (829)
T KOG3605|consen 627 LNSQEIFGDELEHF-AKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTS 705 (829)
T ss_pred cchhhhhccHHHHh-hhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCce
Confidence 47888899888888 999999999999999999999987 3444333 38889999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHhcC--ceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCC
Q psy4897 79 LREATHDEAVKALKRAG--KVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVD 156 (774)
Q Consensus 79 V~~~sh~eaV~lLk~ag--~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~ 156 (774)
+.++....+..++|... ..|+|.|.+=.
T Consensus 706 LVGLPLstcQs~Ik~~KnQT~VkltiV~cp-------------------------------------------------- 735 (829)
T KOG3605|consen 706 LVGLPLSTCQSIIKGLKNQTAVKLNIVSCP-------------------------------------------------- 735 (829)
T ss_pred eccccHHHHHHHHhcccccceEEEEEecCC--------------------------------------------------
Confidence 99999999999999764 45777775311
Q ss_pred CCCcCCCCCCCCCccccceEEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCC
Q psy4897 157 SISSFMDTVDIPDSVENQKRIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235 (774)
Q Consensus 157 s~s~~~~s~~~pe~~~~~~r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~ 235 (774)
.+.+|.+.+. ....|||++..| +|+.+.+|+.|++-| +++|-+|++|||++|..
T Consensus 736 -----------------PV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA 790 (829)
T KOG3605|consen 736 -----------------PVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVA 790 (829)
T ss_pred -----------------CceEEEeecccchhhccceeeCc-------EeehhhcccchhccC-ceeeeeEEEECCceEEe
Confidence 1334444443 356899999887 899999999999976 99999999999999999
Q ss_pred CCHHHHHHHHHHcCcceEE
Q psy4897 236 ATHDEAVKALKRAGKLVEL 254 (774)
Q Consensus 236 ~t~~e~v~~Lk~~g~~V~L 254 (774)
..|+.+|++|-.+-.++.+
T Consensus 791 ~pHekIV~lLs~aVGEIhM 809 (829)
T KOG3605|consen 791 TPHEKIVQLLSNAVGEIHM 809 (829)
T ss_pred ccHHHHHHHHHHhhhhhhh
Confidence 9999999999986555544
No 11
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.53 E-value=2.5e-13 Score=154.13 Aligned_cols=166 Identities=23% Similarity=0.284 Sum_probs=110.2
Q ss_pred CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF 124 (774)
Q Consensus 45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~ 124 (774)
..|++|..|.++|||+++| |++||+|++|||++|.++.+..........++.++|+|.|++.. ..+.
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~-~~~~----------- 322 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKE-KTIT----------- 322 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE-EEEE-----------
Confidence 3689999999999999998 99999999999999998765444433345688999999886522 1111
Q ss_pred eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEE
Q psy4897 125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILI 204 (774)
Q Consensus 125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~I 204 (774)
..+.... ... .. . ...........+.......+++. ....+++|
T Consensus 323 v~l~~~~-----~~~-------------~~----------~---~~~~lGi~~~~l~~~~~~~~~l~-----~~~~Gv~V 366 (428)
T TIGR02037 323 VTLGASP-----EEQ-------------AS----------S---SNPFLGLTVANLSPEIRKELRLK-----GDVKGVVV 366 (428)
T ss_pred EEECcCC-----Ccc-------------cc----------c---cccccceEEecCCHHHHHHcCCC-----cCcCceEE
Confidence 1110000 000 00 0 00000011111111111112221 11257999
Q ss_pred EEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV 262 (774)
Q Consensus 205 s~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~ 262 (774)
..|.++++|+++| |++||+|++|||++|.+ .+++.+++++ .++.+.|+|.|.+..
T Consensus 367 ~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 367 TKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred EEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 9999999999998 99999999999999987 7899999986 578899999987653
No 12
>PRK10139 serine endoprotease; Provisional
Probab=99.52 E-value=3.3e-13 Score=153.86 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=107.3
Q ss_pred CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF 124 (774)
Q Consensus 45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~ 124 (774)
..|++|..|.++|||+++| |++||+|++|||++|.++..........+.++.+.|+|.|++.. ..+.+.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~-~~l~v~--------- 357 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKP-LEVEVT--------- 357 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEE-EEEEEE---------
Confidence 4689999999999999998 99999999999999998754433222235688999999886521 111111
Q ss_pred eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCC--CCCCCCe
Q psy4897 125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG--KENKMPI 202 (774)
Q Consensus 125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg--~~~~~pi 202 (774)
+... .. ......+ . .| ...|+.+... .....++
T Consensus 358 --~~~~-------~~--~~~~~~~---------~--------~~-----------------~~~g~~l~~~~~~~~~~Gv 392 (455)
T PRK10139 358 --LDTS-------TS--SSASAEM---------I--------TP-----------------ALQGATLSDGQLKDGTKGI 392 (455)
T ss_pred --ECCC-------CC--ccccccc---------c--------cc-----------------cccccEecccccccCCCce
Confidence 1000 00 0000000 0 00 0001111100 0013578
Q ss_pred EEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897 203 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261 (774)
Q Consensus 203 ~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~ 261 (774)
+|..|.+++||+++| |++||+|++|||+++.+ ++++.+++++.++.+.|+|.|.++
T Consensus 393 ~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 393 KIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred EEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 999999999999998 99999999999999987 889999998866888999988765
No 13
>PRK10942 serine endoprotease; Provisional
Probab=99.52 E-value=4.6e-13 Score=153.43 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=108.3
Q ss_pred CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeee
Q psy4897 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVF 124 (774)
Q Consensus 45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~ 124 (774)
..|++|..|.++|||+++| |++||+|++|||++|.++............++.+.|+|.|++.. ..+.+
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~-~~v~v---------- 377 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKP-VNVNV---------- 377 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeE-EEEEE----------
Confidence 4689999999999999998 99999999999999998855543333334678899999987521 11111
Q ss_pred eecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceE---EeCCCCCCCC
Q psy4897 125 VSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGIS---IKGGKENKMP 201 (774)
Q Consensus 125 ~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfs---i~gg~~~~~p 201 (774)
++... .... . + .....+|+. +... ....+
T Consensus 378 -~l~~~-----~~~~-------------~--------------~--------------~~~~~lGl~g~~l~~~-~~~~g 409 (473)
T PRK10942 378 -ELQQS-----SQNQ-------------V--------------D--------------SSNIFNGIEGAELSNK-GGDKG 409 (473)
T ss_pred -EeCcC-----cccc-------------c--------------c--------------cccccccceeeecccc-cCCCC
Confidence 11000 0000 0 0 000012211 1100 01247
Q ss_pred eEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261 (774)
Q Consensus 202 i~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~ 261 (774)
++|..|.++++|+++| |++||+|++|||++|.+ .+++.+++++.++.+.|+|.|.+.
T Consensus 410 vvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 410 VVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred eEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 9999999999999998 99999999999999988 889999998877889999988764
No 14
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.51 E-value=1.2e-13 Score=120.48 Aligned_cols=80 Identities=35% Similarity=0.605 Sum_probs=74.9
Q ss_pred EEEEEeecCCcccEEEEccCCCC-CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897 23 SENYKYTENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101 (774)
Q Consensus 23 ~V~l~rk~~~gLGfsI~GG~e~~-~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~ 101 (774)
+|++.|+++++|||.+.++.+.. .+++|..|.|+|||+++| |++||+|++|||+++.++++.+++.+++.++..|+|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 57888889999999999998765 799999999999999999 9999999999999999999999999999999999998
Q ss_pred ee
Q psy4897 102 VG 103 (774)
Q Consensus 102 V~ 103 (774)
|.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 73
No 15
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.50 E-value=2.4e-13 Score=155.06 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=110.7
Q ss_pred CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeeee
Q psy4897 47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVS 126 (774)
Q Consensus 47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~t 126 (774)
..+|..|.|+|||+++| |++||+|++|||++|.+++........+..+++++++|.|++... ... .+
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~-~~~-----------v~ 193 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQ-RRD-----------KT 193 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccc-eEE-----------EE
Confidence 45799999999999998 999999999999999999877666666667889999999876321 111 11
Q ss_pred cccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEE
Q psy4897 127 LEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISK 206 (774)
Q Consensus 127 L~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~ 206 (774)
+..... .. . +. .......+|+.... ...+++|..
T Consensus 194 l~~~~~-----~~-------------~--------------~~-----------~~~~~~~lGl~~~~---~~~~~vV~~ 227 (449)
T PRK10779 194 LDLRHW-----AF-------------E--------------PD-----------KQDPVSSLGIRPRG---PQIEPVLAE 227 (449)
T ss_pred eccccc-----cc-------------C--------------cc-----------ccchhhcccccccC---CCcCcEEEe
Confidence 100000 00 0 00 00011235553221 234579999
Q ss_pred ecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE 261 (774)
Q Consensus 207 V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~ 261 (774)
|.++|||+++| |++||+|++|||+++.+ ++++.+.++. .++.+.++|.|.++
T Consensus 228 V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 228 VQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred eCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCE
Confidence 99999999998 99999999999999977 8899888877 66789999988765
No 16
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.35 E-value=9e-12 Score=141.05 Aligned_cols=134 Identities=26% Similarity=0.273 Sum_probs=101.5
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFV 125 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~ 125 (774)
.+.+|.+|.++|||+++| |++||+|++|||+++.++.+......... ..+.+.+.|+.... .
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~--~~v~~~I~r~g~~~------------~--- 189 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIA--GEPMVEILAERENW------------T--- 189 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhc--ccceEEEEEecCce------------E---
Confidence 578999999999999997 99999999999999998866544333333 67788887754110 0
Q ss_pred ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEE
Q psy4897 126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILIS 205 (774)
Q Consensus 126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is 205 (774)
+.+ .+++.... ...+++|.
T Consensus 190 ----------------------------------------------------l~v------~l~~~~~~---~~~g~vV~ 208 (420)
T TIGR00054 190 ----------------------------------------------------FEV------MKELIPRG---PKIEPVLS 208 (420)
T ss_pred ----------------------------------------------------ecc------cccceecC---CCcCcEEE
Confidence 000 01111000 12357999
Q ss_pred EecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897 206 KIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE 261 (774)
Q Consensus 206 ~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~ 261 (774)
.|.++|||+++| |++||+|++|||++|.+ .+++.+.++. .++.+.++|.|+++
T Consensus 209 ~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 209 DVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred EECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCE
Confidence 999999999998 99999999999999987 8899999887 66789999988764
No 17
>KOG3550|consensus
Probab=99.28 E-value=8e-12 Score=118.54 Aligned_cols=77 Identities=42% Similarity=0.591 Sum_probs=73.4
Q ss_pred eecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897 28 YTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV 104 (774)
Q Consensus 28 rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R 104 (774)
-+.+.||||.|.||++.+.+|||+.|.||+.|++.|+|+.||++++|||++|++-.|+.|+.+|+.+...|.|+|..
T Consensus 97 pktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvry 173 (207)
T KOG3550|consen 97 PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRY 173 (207)
T ss_pred CccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEec
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999854
No 18
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.25 E-value=3.8e-11 Score=104.64 Aligned_cols=79 Identities=38% Similarity=0.671 Sum_probs=71.6
Q ss_pred EEEeccCCCCcceEEeCCCCCC-CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897 178 IRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256 (774)
Q Consensus 178 V~L~k~~~~~LGfsi~gg~~~~-~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V 256 (774)
+++.+....+|||.+.++.+.. .+++|+.|.+++||+++| |++||+|++|||+++.++++++++.+++.+++.++|+|
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V 80 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV 80 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence 5677767889999999876543 689999999999999998 99999999999999999999999999999888999987
Q ss_pred E
Q psy4897 257 K 257 (774)
Q Consensus 257 ~ 257 (774)
+
T Consensus 81 ~ 81 (81)
T PF00595_consen 81 Q 81 (81)
T ss_dssp E
T ss_pred C
Confidence 4
No 19
>KOG3550|consensus
Probab=99.23 E-value=2.6e-11 Score=115.09 Aligned_cols=88 Identities=41% Similarity=0.648 Sum_probs=81.9
Q ss_pred ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE 253 (774)
Q Consensus 174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~ 253 (774)
.+|.|++.|. ..+|||.+-||++.+.||+|++|.||+.|++.|+|+.||++++|||++|.+-.|+.+|.+|+++-+.|.
T Consensus 90 hprvvelpkt-deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk 168 (207)
T KOG3550|consen 90 HPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK 168 (207)
T ss_pred CCceeecCcc-ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence 4788898884 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccc
Q psy4897 254 LEVKYLREV 262 (774)
Q Consensus 254 L~V~R~~~~ 262 (774)
|+|++.+.+
T Consensus 169 lvvrytpkv 177 (207)
T KOG3550|consen 169 LVVRYTPKV 177 (207)
T ss_pred EEEecChHH
Confidence 999876543
No 20
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.14 E-value=5.5e-10 Score=96.73 Aligned_cols=80 Identities=39% Similarity=0.591 Sum_probs=71.1
Q ss_pred EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897 22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101 (774)
Q Consensus 22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~ 101 (774)
+++.+.+....+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++.....++|.
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 567787888999999999876555789999999999999976 9999999999999999999999999999877777776
Q ss_pred e
Q psy4897 102 V 102 (774)
Q Consensus 102 V 102 (774)
|
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 21
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.08 E-value=1.7e-09 Score=93.76 Aligned_cols=82 Identities=39% Similarity=0.526 Sum_probs=71.5
Q ss_pred EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897 22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101 (774)
Q Consensus 22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~ 101 (774)
..+.+.+.. ..|||.+..+.....+++|..|.+++||+++| |++||+|++|||+++.++++.+....++.+++.+.|.
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred EEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 456676666 99999998765433689999999999999998 9999999999999999999999999999888788888
Q ss_pred eeec
Q psy4897 102 VGVG 105 (774)
Q Consensus 102 V~R~ 105 (774)
+.|.
T Consensus 81 i~r~ 84 (85)
T smart00228 81 VLRG 84 (85)
T ss_pred EEeC
Confidence 8764
No 22
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=3.4e-09 Score=89.27 Aligned_cols=68 Identities=37% Similarity=0.609 Sum_probs=60.2
Q ss_pred CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC-ceEEEEe
Q psy4897 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG-KVVELEV 102 (774)
Q Consensus 32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag-~~V~L~V 102 (774)
.+|||.+.++.+ .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++... +.|+|+|
T Consensus 1 ~~~G~~~~~~~~--~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTE--GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCC--CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 368999987644 489999999999999987 9999999999999999999999999999864 7788776
No 23
>KOG3553|consensus
Probab=98.88 E-value=1e-09 Score=97.67 Aligned_cols=82 Identities=30% Similarity=0.436 Sum_probs=68.3
Q ss_pred EEEEEEeec--------CCcccEEEEccCCCC----------CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCC
Q psy4897 22 YSENYKYTE--------NNGLGISIKGGKENK----------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83 (774)
Q Consensus 22 ~~V~l~rk~--------~~gLGfsI~GG~e~~----------~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~s 83 (774)
..|++++.. +-.+||.|.||.+.. .||||.+|.+||||+.+| |+.+|.|+.|||.+..-++
T Consensus 17 i~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvT 95 (124)
T KOG3553|consen 17 IRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVT 95 (124)
T ss_pred EEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEE
Confidence 445666543 236999999998742 589999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEeeec
Q psy4897 84 HDEAVKALKRAGKVVELEVGVG 105 (774)
Q Consensus 84 h~eaV~lLk~ag~~V~L~V~R~ 105 (774)
|++|+..+++. ..+++.|.|.
T Consensus 96 Hd~Avk~i~k~-~vl~mLVaR~ 116 (124)
T KOG3553|consen 96 HDQAVKRITKE-EVLRMLVARQ 116 (124)
T ss_pred hHHHHHHhhHh-HHHHHHHHhh
Confidence 99999999983 4566666654
No 24
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.86 E-value=1.3e-08 Score=91.80 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=62.2
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN 537 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~ 537 (774)
...|+++||+|++..||+|.+...+......++..+ .+....+....++|.|.++. .++++|++|+..|+..
T Consensus 17 ~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-----~v~~~~~~~k~~~F~I~~~~---~~~~~f~a~s~~e~~~ 88 (96)
T cd01260 17 GQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-----TIESAKEVKKKYAFKVCHPV---YKSFYFAAETLDDLSQ 88 (96)
T ss_pred ccCceeEEEEEECCEEEEECCCCCCccceEEEccCC-----EEEEchhcCCceEEEECCCC---CcEEEEEeCCHHHHHH
Confidence 568999999999999999999987665555555544 33222233355999998764 3799999999999999
Q ss_pred HHHHHHHH
Q psy4897 538 WARTLVQA 545 (774)
Q Consensus 538 w~~~l~~~ 545 (774)
|.++|.+|
T Consensus 89 Wi~ai~~~ 96 (96)
T cd01260 89 WVNHLITA 96 (96)
T ss_pred HHHHHHhC
Confidence 99999764
No 25
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.86 E-value=5.3e-09 Score=91.54 Aligned_cols=71 Identities=25% Similarity=0.440 Sum_probs=55.8
Q ss_pred CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHH--HhcCceEEEEeeecc
Q psy4897 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL--KRAGKVVELEVGVGY 106 (774)
Q Consensus 32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lL--k~ag~~V~L~V~R~~ 106 (774)
++||+.+..-.+ ..+++|..|.++|||+++| |++||+|++|||++|.+..+ ....+ ...++.|+|+|.|+.
T Consensus 1 ~~lGv~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~--~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 1 GGLGVTVQNLSD-TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSED--LVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp -E-SEEEEECSC-SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHH--HHHHHHCSSTTSEEEEEEEETT
T ss_pred CEECeEEEEccC-CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHH--HHHHHHhCCCCCEEEEEEEECC
Confidence 367888875433 4689999999999999998 99999999999999977644 44444 356899999999976
No 26
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.83 E-value=3.3e-08 Score=85.58 Aligned_cols=80 Identities=41% Similarity=0.655 Sum_probs=67.6
Q ss_pred EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE 255 (774)
Q Consensus 176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~ 255 (774)
+.+.+.+.....+||.+.+......+++|..|.++++|+++| |++||+|++|||.++.+++++++.+.++.....++|+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 346666666788999998764334689999999999999987 9999999999999999888999999999876677776
Q ss_pred E
Q psy4897 256 V 256 (774)
Q Consensus 256 V 256 (774)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 27
>KOG1892|consensus
Probab=98.80 E-value=9.9e-09 Score=119.57 Aligned_cols=88 Identities=33% Similarity=0.522 Sum_probs=77.5
Q ss_pred CCCCcEEEEEEeecCCcccEEEEccCC---CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897 17 SSRDFYSENYKYTENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93 (774)
Q Consensus 17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e---~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ 93 (774)
+.-++.+|+|+|. +|.|++|+...+ .+.||||++|.+|++|+.+|+|+.||++|+|||.++.+.+.+.|..++.+
T Consensus 930 ~~pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr 1007 (1629)
T KOG1892|consen 930 KEPEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR 1007 (1629)
T ss_pred cCCceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc
Confidence 4466888888766 889999885333 35899999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEeeecc
Q psy4897 94 AGKVVELEVGVGY 106 (774)
Q Consensus 94 ag~~V~L~V~R~~ 106 (774)
.|..|.|.|...+
T Consensus 1008 tg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 1008 TGNVVHLEVAKQG 1020 (1629)
T ss_pred cCCeEEEehhhhh
Confidence 9999999996543
No 28
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.74 E-value=1.3e-07 Score=81.89 Aligned_cols=81 Identities=40% Similarity=0.577 Sum_probs=68.4
Q ss_pred EEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256 (774)
Q Consensus 177 ~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V 256 (774)
.+.+.+.. ..+||.+........+++|..|.++++|+++| |++||+|++|||+++.++++.+....++..+..+.|++
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 45566655 78999988653322689999999999999998 99999999999999999999999998888777888888
Q ss_pred EEe
Q psy4897 257 KYL 259 (774)
Q Consensus 257 ~R~ 259 (774)
.|.
T Consensus 82 ~r~ 84 (85)
T smart00228 82 LRG 84 (85)
T ss_pred EeC
Confidence 764
No 29
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.72 E-value=1.4e-07 Score=83.62 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=71.6
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC------CCcEEEEEEeCCCCceeeEEEEec
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH------SDVIVFSVRCGTPQGVATHHLRAE 530 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~------~~~~~f~~~~~t~~g~~~~~~~~e 530 (774)
....|+++|++|++..|++|.++.. .....|...++|....+...... ...++|.|.+..+ ++++|.++
T Consensus 13 ~~~~wk~r~~vL~~~~L~~~~~~~~--~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~---~~~~~~~~ 87 (104)
T PF00169_consen 13 SRKKWKKRYFVLRDSYLLYYKSSKD--KSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNG---KSYLFSAE 87 (104)
T ss_dssp SSSSEEEEEEEEETTEEEEESSTTT--TTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTS---EEEEEEES
T ss_pred CCCCeEEEEEEEECCEEEEEecCcc--ccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCC---cEEEEEcC
Confidence 3578999999999999999999986 56778888888888876554332 3349999999965 89999999
Q ss_pred ChhHHHHHHHHHHHHH
Q psy4897 531 THRDLANWARTLVQAT 546 (774)
Q Consensus 531 t~~dl~~w~~~l~~~~ 546 (774)
|..|+..|.++|..++
T Consensus 88 s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 88 SEEERKRWIQAIQKAI 103 (104)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998875
No 30
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.68 E-value=1.1e-07 Score=80.13 Aligned_cols=67 Identities=39% Similarity=0.664 Sum_probs=58.5
Q ss_pred CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-CcceEEEE
Q psy4897 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLVELEV 256 (774)
Q Consensus 187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V~L~V 256 (774)
.+||.+....+ .+++|..|.+++||+.+| |++||+|++|||+++.+++++++.+.++.. +..++|+|
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57888876532 489999999999999987 999999999999999999999999999984 47788776
No 31
>KOG0792|consensus
Probab=98.66 E-value=1.6e-09 Score=128.70 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=131.4
Q ss_pred CCCcceEEeCCCCCC-----CCeEEEEec-------------CCChhhhc-cCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy4897 185 NNGLGISIKGGKENK-----MPILISKIF-------------KGMAADQT-EQLYVGDAILSVNGEDLREATHDEAVKAL 245 (774)
Q Consensus 185 ~~~LGfsi~gg~~~~-----~pi~Is~V~-------------pgspA~~a-G~L~~GD~IlaVNG~~V~~~t~~e~v~~L 245 (774)
.+.+||.++|+.+.. .|+.+++|. |+++|+.. -++-.||+++.|||.++....|+.++..|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 788999999988765 889999999 99999775 35889999999999999999999999999
Q ss_pred HHcC-----cceEEEEEEecccccccccCccccc-ccccccCCCCCCCCCCCCC-------CC------CCCCCcCcccc
Q psy4897 246 KRAG-----KLVELEVKYLREVTPYFRKASIISE-VGWELQRGFLSDSPPSPSP-------QS------SQRADTRYLPL 306 (774)
Q Consensus 246 k~~g-----~~V~L~V~R~~~~~~~~~~~~~~~~-l~w~~~~~~~~~~~~~~~~-------~~------~~~~~~~~ipl 306 (774)
++.. +...|.+.. .......+ ...... +.-..+-.....+...... .. ..++..+.++.
T Consensus 795 rs~r~~~~s~e~~l~~~~-~~~~~~~~-~e~~~~~~~~l~~~~la~~~~~~~~~~~~~r~~~dks~~~L~~~L~~g~v~~ 872 (1144)
T KOG0792|consen 795 RSPRENITSGELMLTGRP-NAPRERLK-AEDSDEPLSQLVPESLAVDSVVEELDSGATRASLDKSCIILAQGLEDGMVFT 872 (1144)
T ss_pred hhhhhccccccccccCCc-cccchhhh-ccccCCchhhhCCccccccCccccCcccccccchhhHHHHHHhhhhcCchHH
Confidence 8743 333333321 11111111 100000 0000000000000000000 00 12455666666
Q ss_pred eeeEeeec----------ccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH---hhhhhHHHHHHHhhhcC
Q psy4897 307 QLCYLVRN----------YKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST---LHVLTLKSIAEANKILG 373 (774)
Q Consensus 307 ~~~~l~R~----------~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n---i~~l~~~~~~~~n~~l~ 373 (774)
++.+++|+ ++.|..|||+.+|.++|.++.-..-++|. ||-|+| |+...-.....|+++++
T Consensus 873 efE~i~rkkp~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~~-------nagYINAS~i~ipvgg~e~~YIA~QG 945 (1144)
T KOG0792|consen 873 EFEQIYRKKPGMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKDN-------NAGYINASHIEIPVGGIENRYIACQG 945 (1144)
T ss_pred HHHHHhhhCCCceeeeccccccccccccCCcCCCcCceeeeccCCCC-------CcccccceeeEeeecceeEEEEEecC
Confidence 66666666 66788899999999999997766667775 788888 88888888889999999
Q ss_pred C--CCCCCceEEEEcc
Q psy4897 374 P--ALLGDLQLIGWLA 387 (774)
Q Consensus 374 ~--~~~~~~~~mGWl~ 387 (774)
| +||.+||+|.|--
T Consensus 946 PLp~T~~DFWQMVWEQ 961 (1144)
T KOG0792|consen 946 PLPHTCTDFWQMVWEQ 961 (1144)
T ss_pred CCcchHHHHHHHHHhc
Confidence 9 9999999999973
No 32
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.66 E-value=1e-07 Score=83.29 Aligned_cols=70 Identities=27% Similarity=0.533 Sum_probs=60.3
Q ss_pred CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeec
Q psy4897 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVG 105 (774)
Q Consensus 32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~ 105 (774)
.+||+.+.. +..+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++. .++.+.|++.|.
T Consensus 2 ~~lG~~~~~---~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKY---DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEE---cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 478888864 24679999999999999997 99999999999999999988888888865 577889999875
No 33
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.59 E-value=2.2e-07 Score=81.26 Aligned_cols=72 Identities=26% Similarity=0.463 Sum_probs=58.5
Q ss_pred CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV 262 (774)
Q Consensus 187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~ 262 (774)
.+|+.+..... ..+++|..|.+++||+++| |++||+|++|||+++.+ ..++...+.. .++.+.|+|.|.++.
T Consensus 2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSC-SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccC-CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 36776655321 3589999999999999998 99999999999999977 7888888864 789999999997654
No 34
>KOG3651|consensus
Probab=98.57 E-value=1.7e-07 Score=98.40 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=76.1
Q ss_pred EEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEE
Q psy4897 22 YSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101 (774)
Q Consensus 22 ~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~ 101 (774)
.+|++.+...+-.||||.||...-..+||.+|+.++||+++|+++.||.|++|||+.|.+.+..++.++++.+-+.|.+.
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 46789999999999999999876667999999999999999999999999999999999999999999999999998888
Q ss_pred ee
Q psy4897 102 VG 103 (774)
Q Consensus 102 V~ 103 (774)
.-
T Consensus 86 yN 87 (429)
T KOG3651|consen 86 YN 87 (429)
T ss_pred eh
Confidence 74
No 35
>KOG3571|consensus
Probab=98.56 E-value=1.2e-07 Score=105.38 Aligned_cols=88 Identities=30% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCCCcEEEEEEeecCCcccEEEEccCCC--CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897 17 SSRDFYSENYKYTENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94 (774)
Q Consensus 17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~--~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a 94 (774)
-+-+|++|+|..+.-+-|||+|+|-... ..||||+.|.+|++.+.+|++.+||.||.||.++.++++-.+||+.|+.+
T Consensus 246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREa 325 (626)
T KOG3571|consen 246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREA 325 (626)
T ss_pred cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHH
Confidence 3678999999999889999999985443 36899999999999999999999999999999999999999999999975
Q ss_pred ---CceEEEEeee
Q psy4897 95 ---GKVVELEVGV 104 (774)
Q Consensus 95 ---g~~V~L~V~R 104 (774)
...++|+|..
T Consensus 326 V~~~gPi~ltvAk 338 (626)
T KOG3571|consen 326 VSRPGPIKLTVAK 338 (626)
T ss_pred hccCCCeEEEEee
Confidence 2346777743
No 36
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.50 E-value=7.3e-07 Score=79.04 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCC-CcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHS-DVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~-~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
...|+++||+|+++.|++|...+.. -..|....+|..+.+...+... ..++|.|.+++ ++++|+++|..|+.
T Consensus 13 ~~~W~kr~~~L~~~~l~~y~~~~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~----~~~~f~a~s~~~~~ 85 (94)
T cd01250 13 NKEWKKRWFVLKNGQLTYHHRLKDY---DNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT----KTWHFQADSEEERD 85 (94)
T ss_pred CCCceEEEEEEeCCeEEEEcCCccc---ccccceEEeccceEEecCccccCCceEEEEEcCC----cEEEEECCCHHHHH
Confidence 4679999999999999999998742 1233444555444443332222 45999999875 68999999999999
Q ss_pred HHHHHHHH
Q psy4897 537 NWARTLVQ 544 (774)
Q Consensus 537 ~w~~~l~~ 544 (774)
.|..+|.+
T Consensus 86 ~Wi~al~~ 93 (94)
T cd01250 86 DWISAIQE 93 (94)
T ss_pred HHHHHHhc
Confidence 99999965
No 37
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=1.2e-06 Score=77.26 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=63.2
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN 537 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~ 537 (774)
...|+++||+|++..|++|.+..... ..|....+|-.+++... ..+.++|.|.++.. ++++|.+++..|+..
T Consensus 12 ~~~W~~r~~vl~~~~L~~~~~~~~~~---~~~~~~i~l~~~~~~~~--~~~~~~F~i~~~~~---~~~~~~a~s~~e~~~ 83 (91)
T cd01246 12 LKGWQKRWFVLDNGLLSYYKNKSSMR---GKPRGTILLSGAVISED--DSDDKCFTIDTGGD---KTLHLRANSEEERQR 83 (91)
T ss_pred CCCceeeEEEEECCEEEEEecCccCC---CCceEEEEeceEEEEEC--CCCCcEEEEEcCCC---CEEEEECCCHHHHHH
Confidence 36799999999999999999987542 45666677766654332 23369999998743 799999999999999
Q ss_pred HHHHHHHH
Q psy4897 538 WARTLVQA 545 (774)
Q Consensus 538 w~~~l~~~ 545 (774)
|..+|..|
T Consensus 84 Wi~al~~a 91 (91)
T cd01246 84 WVDALELA 91 (91)
T ss_pred HHHHHHhC
Confidence 99998654
No 38
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.46 E-value=1.7e-06 Score=75.27 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC---CCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH---SDVIVFSVRCGTPQGVATHHLRAETHRD 534 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~---~~~~~f~~~~~t~~g~~~~~~~~et~~d 534 (774)
...|+++|++|.+..|++|...+.... ..+...++|-..++...... ...++|.|.++++ +.++|+++|..|
T Consensus 15 ~~~~~~~~~~L~~~~l~~~~~~~~~~~--~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~---~~~~f~~~s~~~ 89 (102)
T smart00233 15 KKSWKKRYFVLFNSTLLYYKSEKAKKD--YKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADR---RSYLLQAESEEE 89 (102)
T ss_pred cCCceEEEEEEECCEEEEEeCCCcccc--CCCceEEECCcCEEEeCCCCccCCCceEEEEEecCC---ceEEEEcCCHHH
Confidence 467999999999999999999986433 77788888888765544332 2359999998865 799999999999
Q ss_pred HHHHHHHHHHHH
Q psy4897 535 LANWARTLVQAT 546 (774)
Q Consensus 535 l~~w~~~l~~~~ 546 (774)
+..|..+|.+++
T Consensus 90 ~~~W~~~i~~~~ 101 (102)
T smart00233 90 REEWVDALRKAI 101 (102)
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
No 39
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.43 E-value=1.5e-06 Score=78.11 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=62.0
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN 537 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~ 537 (774)
-+.|+++|+||+++.|+.|.+.+.... .|....+|-.+.++. ...++.+|.|.+++. ++++|++++..|+..
T Consensus 12 ~k~Wk~RwFvL~~g~L~Yyk~~~~~~~---~~~G~I~L~~~~i~~--~~~~~~~F~i~~~~~---r~~~L~A~s~~e~~~ 83 (91)
T cd01247 12 INGWQDRYFVLKEGNLSYYKSEAEKSH---GCRGSIFLKKAIIAA--HEFDENRFDISVNEN---VVWYLRAENSQSRLL 83 (91)
T ss_pred cCCCceEEEEEECCEEEEEecCccCcC---CCcEEEECcccEEEc--CCCCCCEEEEEeCCC---eEEEEEeCCHHHHHH
Confidence 578999999999999999999875421 455566665555442 234568999988753 899999999999999
Q ss_pred HHHHHHH
Q psy4897 538 WARTLVQ 544 (774)
Q Consensus 538 w~~~l~~ 544 (774)
|.++|.+
T Consensus 84 Wi~al~~ 90 (91)
T cd01247 84 WMDSVVR 90 (91)
T ss_pred HHHHHhh
Confidence 9999975
No 40
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.42 E-value=6.6e-07 Score=77.90 Aligned_cols=62 Identities=27% Similarity=0.421 Sum_probs=51.6
Q ss_pred CCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897 42 KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY 106 (774)
Q Consensus 42 ~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~ 106 (774)
.+...|++|..|.++|||+++| |++||+|++|||+++.++ .+....+.. .++.+.+++.|++
T Consensus 6 ~~~~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 6 AEAVAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred cccCCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECC
Confidence 4455789999999999999987 999999999999999976 455566664 3788999998765
No 41
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.39 E-value=1.1e-06 Score=76.72 Aligned_cols=69 Identities=28% Similarity=0.495 Sum_probs=59.2
Q ss_pred CcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEe
Q psy4897 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYL 259 (774)
Q Consensus 187 ~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~ 259 (774)
++|+.+... ..+++|..|.+++||+++| |++||+|++|||+++.++++.++...++. .+..+.|++.|.
T Consensus 3 ~lG~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYD---DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEc---CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 577777542 4679999999999999997 99999999999999999888999988876 577889998876
No 42
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.39 E-value=2.4e-06 Score=80.94 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=65.4
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc----------------
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG---------------- 521 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g---------------- 521 (774)
...|+++||+|++..|++|.+.... .|....+|-.+.+.........+||.|.+.+..+
T Consensus 13 ~~~WkkRwfvL~~~~L~yyk~~~~~-----~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~ 87 (125)
T cd01252 13 VKTWKRRWFILTDNCLYYFEYTTDK-----EPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEG 87 (125)
T ss_pred CCCeEeEEEEEECCEEEEEcCCCCC-----CceEEEECCCcEEEEcccCCCCeeEEEECCcccccccccccccccccccc
Confidence 3679999999999999999987643 4666666666554433233445999998876521
Q ss_pred -eeeEEEEecChhHHHHHHHHHHHHHHH
Q psy4897 522 -VATHHLRAETHRDLANWARTLVQATHS 548 (774)
Q Consensus 522 -~~~~~~~~et~~dl~~w~~~l~~~~~~ 548 (774)
-.+++|+++|..|+..|..+|..++..
T Consensus 88 ~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 88 NHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 157889999999999999999888754
No 43
>KOG3553|consensus
Probab=98.35 E-value=1.5e-07 Score=83.97 Aligned_cols=70 Identities=33% Similarity=0.521 Sum_probs=59.7
Q ss_pred CcceEEeCCCCC----------CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEE
Q psy4897 187 GLGISIKGGKEN----------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256 (774)
Q Consensus 187 ~LGfsi~gg~~~----------~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V 256 (774)
.+||.|-||.+. ..|++|.+|.+||||+.+| |+.+|.|++|||-+..-++|++++..|++. ..+.++|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHH
Confidence 368888887653 3689999999999999998 999999999999999999999999999883 4555555
Q ss_pred EE
Q psy4897 257 KY 258 (774)
Q Consensus 257 ~R 258 (774)
.|
T Consensus 114 aR 115 (124)
T KOG3553|consen 114 AR 115 (124)
T ss_pred Hh
Confidence 44
No 44
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.35 E-value=2.7e-06 Score=76.93 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCceEEEEEEeccc--eeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHH
Q psy4897 458 TDRWVSIFGAVTER--ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDL 535 (774)
Q Consensus 458 ~~~w~~~~~~l~~~--~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl 535 (774)
.+.|+++|+||+++ .||.|.++... .|....+|-...++..... ...+|.|.+++ ++|+|.+++..|+
T Consensus 14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d~-----~p~G~I~L~~~~~~~~~~~-~~~~F~i~t~~----r~y~l~A~s~~e~ 83 (95)
T cd01265 14 LRGRRSRWFALDDRTCYLYYYKDSQDA-----KPLGRVDLSGAAFTYDPRE-EKGRFEIHSNN----EVIALKASSDKQM 83 (95)
T ss_pred CcCceeEEEEEcCCCcEEEEECCCCcc-----cccceEECCccEEEcCCCC-CCCEEEEEcCC----cEEEEECCCHHHH
Confidence 57899999999964 68889888743 5666666666554433222 25899999875 5899999999999
Q ss_pred HHHHHHHHHH
Q psy4897 536 ANWARTLVQA 545 (774)
Q Consensus 536 ~~w~~~l~~~ 545 (774)
..|+++|..+
T Consensus 84 ~~Wi~al~~~ 93 (95)
T cd01265 84 NYWLQALQSK 93 (95)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 45
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.35 E-value=1.9e-06 Score=74.48 Aligned_cols=66 Identities=26% Similarity=0.340 Sum_probs=50.8
Q ss_pred ccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 34 LGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
+|+.+.. .+.+++|..|.++|||+++| |++||+|++|||+++.++ .++...+ ..++.+.+++.|++
T Consensus 3 ~G~~~~~---~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~--~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDK---EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDAL--QDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEc---cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHH--HHHHHhc-CCCCEEEEEEEECC
Confidence 6777753 24579999999999999998 999999999999999873 2222222 35678889888764
No 46
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.27 E-value=5.8e-06 Score=75.96 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=57.4
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeE----eeeccCC---CCCc-EEEEEEeCCCCceeeEEEEe
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST----RLVSSSR---HSDV-IVFSVRCGTPQGVATHHLRA 529 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~----r~~~~s~---~~~~-~~f~~~~~t~~g~~~~~~~~ 529 (774)
...|+.+|++|++..|+.|.++.... |...-+|-.. .+....+ ..+. ++|.|.++. ++|+|++
T Consensus 13 ~k~wkkRwFvL~~~~L~Yyk~~~d~~-----~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~----Rty~l~a 83 (103)
T cd01251 13 TEGFKKRWFTLDDRRLMYFKDPLDAF-----AKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE----RKFLFAC 83 (103)
T ss_pred CCCceeEEEEEeCCEEEEECCCCCcC-----cCcEEEeeccccceeEeccCCccccccccceEEEEeCC----eEEEEEC
Confidence 36799999999999999999987543 3333333211 1111111 1222 599999984 6999999
Q ss_pred cChhHHHHHHHHHHHHH
Q psy4897 530 ETHRDLANWARTLVQAT 546 (774)
Q Consensus 530 et~~dl~~w~~~l~~~~ 546 (774)
+|..|+..|..+|.++.
T Consensus 84 ~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 84 ETEQDRREWIAAFQNVL 100 (103)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 47
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.26 E-value=4.6e-06 Score=77.12 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=58.8
Q ss_pred CCceEEEEEEeccce-------eEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEe
Q psy4897 458 TDRWVSIFGAVTERE-------LRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRA 529 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~-------l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~ 529 (774)
..+|+++|++|++.. |+.|...+.++.....++.....+..-+... ....-.++|.+.++. +++||.+
T Consensus 16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~----r~y~l~A 91 (108)
T cd01266 16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV----RDLYLVA 91 (108)
T ss_pred ccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCC----ccEEEEE
Confidence 468999999999987 4999998877666666666532221111100 111112678888753 6999999
Q ss_pred cChhHHHHHHHHHHHH
Q psy4897 530 ETHRDLANWARTLVQA 545 (774)
Q Consensus 530 et~~dl~~w~~~l~~~ 545 (774)
||..|+..|.++|-+-
T Consensus 92 ~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 92 KNEEEMTLWVNCICKL 107 (108)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999653
No 48
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.26 E-value=7.2e-06 Score=74.83 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=61.4
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC----CCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH----SDVIVFSVRCGTPQGVATHHLRAETHR 533 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~----~~~~~f~~~~~t~~g~~~~~~~~et~~ 533 (774)
...|+++|++|++..|++|.+... ..|....+|-.+.+...... ...++|.|.++. ++++|.+++..
T Consensus 15 ~k~WkkRwfvL~~~~L~yyk~~~~-----~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~----rt~~~~A~s~~ 85 (100)
T cd01233 15 NSGWTRRFVVVRRPYLHIYRSDKD-----PVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKH----RGYLFQALSDK 85 (100)
T ss_pred CCCcEEEEEEEECCEEEEEccCCC-----ccEeeEEEecccEEEEccchhhhcCCCcEEEEECCC----CEEEEEcCCHH
Confidence 467999999999999999999764 35566666665554433211 234899998875 68999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4897 534 DLANWARTLVQAT 546 (774)
Q Consensus 534 dl~~w~~~l~~~~ 546 (774)
|+..|..+|.++.
T Consensus 86 e~~~Wi~ai~~~~ 98 (100)
T cd01233 86 EMIDWLYALNPLY 98 (100)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999996653
No 49
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.25 E-value=2.9e-06 Score=74.62 Aligned_cols=59 Identities=31% Similarity=0.422 Sum_probs=48.7
Q ss_pred CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY 106 (774)
Q Consensus 45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~ 106 (774)
..|++|..|.+++||+++| |++||+|++|||+++.++.+ ...++.. .+..+.+.+.|++
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 3589999999999999987 99999999999999998754 3444444 3788999998764
No 50
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.24 E-value=4.6e-06 Score=71.69 Aligned_cols=58 Identities=28% Similarity=0.475 Sum_probs=48.2
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-CceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~V~L~V~R~~ 106 (774)
.+++|..|.+++||+++| |++||+|++|||+++.++ .+....++.. ++.+.+++.|++
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence 458999999999999987 999999999999999976 4555666554 678888887754
No 51
>KOG3552|consensus
Probab=98.23 E-value=1.2e-06 Score=102.82 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=67.1
Q ss_pred CcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897 20 DFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE 99 (774)
Q Consensus 20 ~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~ 99 (774)
..+.|.+.|...-|||| +.| .+++|..|++|||+. |.|++||+||+|||++|.+++.+.++++++.+.+.|.
T Consensus 55 ~pr~vq~~r~~~lGFgf--vag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ 126 (1298)
T KOG3552|consen 55 EPRQVQLQRNASLGFGF--VAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVN 126 (1298)
T ss_pred cchhhhhhcccccccee--ecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcc
Confidence 35666666666555555 444 689999999999998 7899999999999999999999999999999999999
Q ss_pred EEeeec
Q psy4897 100 LEVGVG 105 (774)
Q Consensus 100 L~V~R~ 105 (774)
|+|.+.
T Consensus 127 ltV~qP 132 (1298)
T KOG3552|consen 127 LTVCQP 132 (1298)
T ss_pred eEEecc
Confidence 999874
No 52
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.19 E-value=6.5e-06 Score=71.66 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=53.1
Q ss_pred CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897 199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV 262 (774)
Q Consensus 199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~ 262 (774)
..+++|..|.+++||+++| |++||+|++|||.++.+ .+++...+.. .+..+.|++.|.++.
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 4578999999999999998 99999999999999986 7889888886 378889999886543
No 53
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.18 E-value=5.6e-06 Score=78.32 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc--C---CCCCcEEEEEEeCCCC-----------
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS--S---RHSDVIVFSVRCGTPQ----------- 520 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~--s---~~~~~~~f~~~~~t~~----------- 520 (774)
....|+++||+|+|..|++|..|.... -..|....+|-.+...+. . .....++|.|++-.+.
T Consensus 15 ~~k~W~RRWFvL~g~~L~y~k~p~d~~--~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~ 92 (122)
T cd01263 15 GFGAWHRRWCALEGGEIKYWKYPDDEK--RKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQ 92 (122)
T ss_pred CCCCceEEEEEEeCCEEEEEcCCCccc--cCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeec
Confidence 357899999999999999999998743 367888888777654332 1 2333489999874331
Q ss_pred ---cee--eEEEEecChhHHHHHHHHHHHH
Q psy4897 521 ---GVA--THHLRAETHRDLANWARTLVQA 545 (774)
Q Consensus 521 ---g~~--~~~~~~et~~dl~~w~~~l~~~ 545 (774)
+++ -|+|++||..|+..|.++|.++
T Consensus 93 ~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 93 CRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 111 3889999999999999999753
No 54
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.17 E-value=9.4e-06 Score=69.79 Aligned_cols=59 Identities=29% Similarity=0.510 Sum_probs=51.0
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc-CcceEEEEEEecc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKLVELEVKYLRE 261 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~-g~~V~L~V~R~~~ 261 (774)
.+++|..|.++++|+++| |++||+|++|||.++.+ ++++...+... +..+.+++.|.+.
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence 468999999999999997 99999999999999987 78888888774 6788888887543
No 55
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.14 E-value=1.1e-05 Score=69.45 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCC-CcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHS-DVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~-~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
.+.|+++|++|++..|++|...+... ...|...++|..+.+....... ..++|.|.+.++ ..++|.+++..|+.
T Consensus 13 ~~~w~~~~~~L~~~~l~~~~~~~~~~--~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~---~~~~~~~~s~~~~~ 87 (96)
T cd00821 13 RKGWKRRWFVLFNDLLLYYKKKSSKK--SYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDG---RSYLLQAESEEERE 87 (96)
T ss_pred hCCccEEEEEEECCEEEEEECCCCCc--CCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCC---cEEEEEeCCHHHHH
Confidence 37899999999999999999998655 6888888888887765543332 349999998865 79999999999999
Q ss_pred HHHHHHHH
Q psy4897 537 NWARTLVQ 544 (774)
Q Consensus 537 ~w~~~l~~ 544 (774)
.|..+|.+
T Consensus 88 ~W~~~l~~ 95 (96)
T cd00821 88 EWIEALQS 95 (96)
T ss_pred HHHHHHhc
Confidence 99999865
No 56
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.13 E-value=8.5e-06 Score=91.81 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=61.2
Q ss_pred CCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897 31 NNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY 106 (774)
Q Consensus 31 ~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~ 106 (774)
-.|+|+.+.-.... ..+++|..|.++|||+++| |++||+|++|||++|.+++..++..+++. .++.|.|+|.|.+
T Consensus 84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 45788887532221 1379999999999999998 99999999999999999988888877764 5788999998754
No 57
>KOG3651|consensus
Probab=98.13 E-value=8.4e-06 Score=85.86 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=73.7
Q ss_pred EEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEE
Q psy4897 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELE 255 (774)
Q Consensus 176 r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~ 255 (774)
..|+++|+..+-+||+|.||...-.=++|..|+.++||++.|+++.||.|++|||++|.+.+-.++.++|+.+-++|.+.
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 46788998888899999988654445799999999999999999999999999999999999999999999988888877
Q ss_pred EEE
Q psy4897 256 VKY 258 (774)
Q Consensus 256 V~R 258 (774)
...
T Consensus 86 yNK 88 (429)
T KOG3651|consen 86 YNK 88 (429)
T ss_pred ehh
Confidence 643
No 58
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.11 E-value=1.5e-05 Score=73.38 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=52.1
Q ss_pred CCCceEEEEEEeccc-eeEEe-cCCCCChhcccCcccccceeeEe-eeccCC-CCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897 457 STDRWVSIFGAVTER-ELRLY-ESAPWSPEAWSTPAHVFPLVSTR-LVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETH 532 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~-~l~~y-~~~p~~~~~~~~~~~~~~l~~~r-~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~ 532 (774)
...+|++||++|+++ .||+| +.+|.++.-+ .-.|-.+. +..... ....++|.|.++. ++|||.+||.
T Consensus 20 ~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G-----~IdL~~~~~V~~~~~~~~~~~~f~I~tp~----R~f~l~Aete 90 (104)
T cd01236 20 RSKRWQRRWFILYDHGLLTYALDEMPTTLPQG-----TIDMNQCTDVVDAEARTGQKFSICILTPD----KEHFIKAETK 90 (104)
T ss_pred eeccccceEEEEeCCCEEEEeeCCCCCcccce-----EEEccceEEEeecccccCCccEEEEECCC----ceEEEEeCCH
Confidence 578999999999965 55555 3444433333 22222222 222211 2224899999986 6999999999
Q ss_pred hHHHHHHHHHH
Q psy4897 533 RDLANWARTLV 543 (774)
Q Consensus 533 ~dl~~w~~~l~ 543 (774)
.|+..|.++|.
T Consensus 91 ~E~~~Wi~~l~ 101 (104)
T cd01236 91 EEISWWLNMLM 101 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999885
No 59
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.10 E-value=7.4e-06 Score=71.01 Aligned_cols=57 Identities=28% Similarity=0.532 Sum_probs=47.1
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~ 106 (774)
.|++|..|.++|||++ | |++||+|++|||.++.++ .+...++.. .++.+.+++.|++
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence 4789999999999986 6 999999999999999965 445556653 5778999998765
No 60
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.10 E-value=1.7e-05 Score=68.71 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=65.4
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
...|+++|++|++..|++|+..+.....+ +.+++...++...... ...++|.++...+ +-..|+|.++|..|+.
T Consensus 16 ~~~w~~~~~~l~~~~l~~~~~~~~~~~~~----~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~-~~~~~~~~~~~~~~~~ 90 (99)
T cd00900 16 GKRWKRRWFFLFDDGLLLYKSDDKKEIKP----GSIPLSEISVEEDPDGSDDPNCFAIVTKDR-GRRVFVFQADSEEEAQ 90 (99)
T ss_pred ccCceeeEEEEECCEEEEEEcCCCCcCCC----CEEEccceEEEECCCCCCCCceEEEECCCC-CcEEEEEEcCCHHHHH
Confidence 57899999999999999999999776654 5677777664333221 2349999998853 3489999999999999
Q ss_pred HHHHHHHHH
Q psy4897 537 NWARTLVQA 545 (774)
Q Consensus 537 ~w~~~l~~~ 545 (774)
.|..+|.++
T Consensus 91 ~W~~al~~~ 99 (99)
T cd00900 91 EWVEALQQA 99 (99)
T ss_pred HHHHHHhcC
Confidence 999998753
No 61
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.10 E-value=2e-05 Score=71.23 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCceEEEEEEecc--ceeEEecCCCCChhcccCcccccceeeEeeec---cC--CC---CCcEEEEEEeCCCCceeeEEE
Q psy4897 458 TDRWVSIFGAVTE--RELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SS--RH---SDVIVFSVRCGTPQGVATHHL 527 (774)
Q Consensus 458 ~~~w~~~~~~l~~--~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s--~~---~~~~~f~~~~~t~~g~~~~~~ 527 (774)
...|+++|++|++ ..|+.|.+...+ .|....+|-....+. .. .+ ....+|.+.++. ++|+|
T Consensus 12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~~-----~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~----r~~~~ 82 (101)
T cd01235 12 LKGWKPRWFVLDPDKHQLRYYDDFEDT-----AEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSK----RTYNF 82 (101)
T ss_pred CCCccceEEEEECCCCEEEEecCCCCC-----ccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCC----ceEEE
Confidence 5789999999994 489999988654 444444444332221 11 01 123789887764 68999
Q ss_pred EecChhHHHHHHHHHHHH
Q psy4897 528 RAETHRDLANWARTLVQA 545 (774)
Q Consensus 528 ~~et~~dl~~w~~~l~~~ 545 (774)
.+|+..|+..|..+|.++
T Consensus 83 ~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 83 LAENINEAQRWKEKIQQC 100 (101)
T ss_pred ECCCHHHHHHHHHHHHhh
Confidence 999999999999999765
No 62
>KOG3552|consensus
Probab=98.08 E-value=4.2e-06 Score=98.40 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=68.0
Q ss_pred cccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897 171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 250 (774)
Q Consensus 171 ~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~ 250 (774)
+...+|.|.+.++. .|||.+..| .|++|..|.+|+|+. |.|++||+|++|||++|++++++-++++++++..
T Consensus 52 i~~~pr~vq~~r~~--~lGFgfvag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~ 123 (1298)
T KOG3552|consen 52 IRWEPRQVQLQRNA--SLGFGFVAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACES 123 (1298)
T ss_pred ccCcchhhhhhccc--cccceeecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhh
Confidence 33357778887754 555555554 789999999999996 7899999999999999999999999999999999
Q ss_pred ceEEEEEE
Q psy4897 251 LVELEVKY 258 (774)
Q Consensus 251 ~V~L~V~R 258 (774)
.|.|+|.+
T Consensus 124 sv~ltV~q 131 (1298)
T KOG3552|consen 124 SVNLTVCQ 131 (1298)
T ss_pred hcceEEec
Confidence 99999986
No 63
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.06 E-value=3.5e-05 Score=70.67 Aligned_cols=86 Identities=14% Similarity=0.327 Sum_probs=59.9
Q ss_pred CCceEEEEEEec-cceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVT-ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
...|+++|++|+ ++.|+.|..-|...+....|+..+.+..+-++.. +....++|.|++-.......++|.+||..|+.
T Consensus 14 ~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~-~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~ 92 (102)
T cd01241 14 IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKT-ERPRPNTFIIRCLQWTTVIERTFHVESPEERE 92 (102)
T ss_pred CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeec-cCCCcceEEEEeccCCcccCEEEEeCCHHHHH
Confidence 578999999999 8899988887766665677777776544322211 22334899998421111223577899999999
Q ss_pred HHHHHHHH
Q psy4897 537 NWARTLVQ 544 (774)
Q Consensus 537 ~w~~~l~~ 544 (774)
.|..+|..
T Consensus 93 eWi~ai~~ 100 (102)
T cd01241 93 EWIHAIQT 100 (102)
T ss_pred HHHHHHHh
Confidence 99999854
No 64
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.06 E-value=9.7e-06 Score=89.47 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=60.1
Q ss_pred CCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY 106 (774)
Q Consensus 31 ~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~ 106 (774)
..++|+.+... ..+++|..|.++|||+++| |++||+|++|||++|.+++..++...++. .+..+.|+|.|.+
T Consensus 50 ~~~lG~~~~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 50 LEGIGIQVGMD---DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred eEEEEEEEEEE---CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 35788888632 3479999999999999998 99999999999999999977777777654 6788999998864
No 65
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.06 E-value=1.4e-05 Score=69.08 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=51.1
Q ss_pred cceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecc
Q psy4897 188 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261 (774)
Q Consensus 188 LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~ 261 (774)
+|+.+... ..+++|..|.++++|+++| |++||+|++|||.++.+ ..+++..+ ..+..+.|++.|.+.
T Consensus 3 ~G~~~~~~---~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 3 LGLTLDKE---EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred ccEEEEcc---CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence 56666432 3468999999999999998 99999999999999976 44443332 256788898887654
No 66
>KOG1892|consensus
Probab=98.06 E-value=8.8e-06 Score=95.79 Aligned_cols=89 Identities=33% Similarity=0.541 Sum_probs=76.7
Q ss_pred cceEEEEEeccCCCCcceEEeCCC---CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897 173 NQKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG 249 (774)
Q Consensus 173 ~~~r~V~L~k~~~~~LGfsi~gg~---~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g 249 (774)
.+..+|+|.|+ +++|++|..-+ ..+.||+|.+|.+|++|+..|+|..||+++.|||.++-+.+.+.+..++-..|
T Consensus 932 pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg 1009 (1629)
T KOG1892|consen 932 PEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG 1009 (1629)
T ss_pred CceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccC
Confidence 45677888885 88999986422 34789999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecccc
Q psy4897 250 KLVELEVKYLREVT 263 (774)
Q Consensus 250 ~~V~L~V~R~~~~~ 263 (774)
..|.|.|...+..+
T Consensus 1010 ~vV~leVaKqgAiy 1023 (1629)
T KOG1892|consen 1010 NVVHLEVAKQGAIY 1023 (1629)
T ss_pred CeEEEehhhhhhHH
Confidence 99999997554443
No 67
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.03 E-value=8.6e-07 Score=81.76 Aligned_cols=49 Identities=37% Similarity=0.748 Sum_probs=43.3
Q ss_pred EEEEcceeccCCCccccCCCCCCCCCCCCCCcceeeecchhhhhhhhccCCCCCCCCCCCCCC
Q psy4897 382 LIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAH 444 (774)
Q Consensus 382 ~mGWl~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 444 (774)
|||||+|+..+++ ....+|||+|+|||++|+++|+++|||+|+|+.|..
T Consensus 1 hmGW~~E~~~~~~--------------~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~ 49 (108)
T cd01258 1 HIGWVNEQLSGDD--------------ESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLY 49 (108)
T ss_pred CceecccccCCCC--------------ccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhh
Confidence 7999999987642 234799999999999999999999999999999975
No 68
>KOG3542|consensus
Probab=98.03 E-value=7.4e-06 Score=93.51 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=76.7
Q ss_pred cCCCCcEEEEEEe-ecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy4897 16 FSSRDFYSENYKY-TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA 94 (774)
Q Consensus 16 ~~s~~~~~V~l~r-k~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a 94 (774)
+.....+.|++.+ .....|-|.+.||.+.+-||||..|.||+-|+++| |+.||+|++|||++.++.+...|+.+|++.
T Consensus 531 aaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn 609 (1283)
T KOG3542|consen 531 AAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN 609 (1283)
T ss_pred hhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC
Confidence 3455677888988 66789999999999999999999999999999998 999999999999999999999999999875
Q ss_pred CceEEEEeee
Q psy4897 95 GKVVELEVGV 104 (774)
Q Consensus 95 g~~V~L~V~R 104 (774)
..++|+|..
T Consensus 610 -thLtltvKt 618 (1283)
T KOG3542|consen 610 -THLTLTVKT 618 (1283)
T ss_pred -ceEEEEEec
Confidence 456677654
No 69
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=2e-05 Score=89.09 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=63.7
Q ss_pred cCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeec
Q psy4897 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVG 105 (774)
Q Consensus 30 ~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~ 105 (774)
+-+|+|+.|.-... .++.|.++.+++||+++| |++||+|+.|||+++.+++..+++..++. .|..|+|++.|.
T Consensus 98 ~~~GiG~~i~~~~~--~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDI--GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecC--CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 45688888864322 679999999999999998 99999999999999999999999988885 588999999996
No 70
>KOG3938|consensus
Probab=97.97 E-value=1e-05 Score=83.97 Aligned_cols=76 Identities=29% Similarity=0.469 Sum_probs=62.7
Q ss_pred EEEEeecCCcccEEEEccCCCCCC-eEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc--CceEEE
Q psy4897 24 ENYKYTENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKVVEL 100 (774)
Q Consensus 24 V~l~rk~~~gLGfsI~GG~e~~~g-i~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a--g~~V~L 100 (774)
|.+ .+....||++|. +++.| .||+.|.+||.-++--.+++||.|-+|||++|.++.|.++..+||.. +...+|
T Consensus 130 v~v-~KsedalGlTIT---DNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftl 205 (334)
T KOG3938|consen 130 VEV-VKSEDALGLTIT---DNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTL 205 (334)
T ss_pred EEE-EecccccceEEe---eCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEE
Confidence 444 456678999997 34433 89999999999999888999999999999999999999999999986 455555
Q ss_pred Eee
Q psy4897 101 EVG 103 (774)
Q Consensus 101 ~V~ 103 (774)
.+.
T Consensus 206 rLi 208 (334)
T KOG3938|consen 206 RLI 208 (334)
T ss_pred Eee
Confidence 554
No 71
>KOG3571|consensus
Probab=97.97 E-value=2.5e-05 Score=87.30 Aligned_cols=87 Identities=28% Similarity=0.341 Sum_probs=72.6
Q ss_pred ccceEEEEEeccCCCCcceEEeCCCC--CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--
Q psy4897 172 ENQKRIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-- 247 (774)
Q Consensus 172 ~~~~r~V~L~k~~~~~LGfsi~gg~~--~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-- 247 (774)
.....+|.|.-....-|||+|.|-.. ...+|+|..|.++++.+..|++.+||.||+||.++..+++-+|+|+.|+.
T Consensus 247 slnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 247 SLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred ceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 34566777766556679999998322 25789999999999999999999999999999999999999999999997
Q ss_pred -cCcceEEEEEE
Q psy4897 248 -AGKLVELEVKY 258 (774)
Q Consensus 248 -~g~~V~L~V~R 258 (774)
...+++|+|..
T Consensus 327 ~~~gPi~ltvAk 338 (626)
T KOG3571|consen 327 SRPGPIKLTVAK 338 (626)
T ss_pred ccCCCeEEEEee
Confidence 45678888864
No 72
>KOG3606|consensus
Probab=97.97 E-value=1.7e-05 Score=82.64 Aligned_cols=90 Identities=28% Similarity=0.382 Sum_probs=76.0
Q ss_pred ceEEEEEeccC-CCCcceEEeCCC---------CCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHH
Q psy4897 174 QKRIIRVKKSE-NNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243 (774)
Q Consensus 174 ~~r~V~L~k~~-~~~LGfsi~gg~---------~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~ 243 (774)
..|.|.+.|.+ ...|||.|+.|. +...||||+++.||+.|+.+|-|.+.|+|++|||+.|.+.+.+++..
T Consensus 158 tHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTD 237 (358)
T KOG3606|consen 158 THRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTD 237 (358)
T ss_pred hhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHH
Confidence 45677787765 568999998754 34578999999999999999999999999999999999999999999
Q ss_pred HHHHcCcceEEEEEEecccc
Q psy4897 244 ALKRAGKLVELEVKYLREVT 263 (774)
Q Consensus 244 ~Lk~~g~~V~L~V~R~~~~~ 263 (774)
++-+....+.++|+...+.+
T Consensus 238 MMvANshNLIiTVkPANQRn 257 (358)
T KOG3606|consen 238 MMVANSHNLIITVKPANQRN 257 (358)
T ss_pred HHhhcccceEEEeccccccc
Confidence 99988788888887544433
No 73
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.96 E-value=2.8e-05 Score=68.31 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=51.2
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHc--CcceEEEEEEecc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVELEVKYLRE 261 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~--g~~V~L~V~R~~~ 261 (774)
.+++|..|.+++||+++| |++||+|++|||.++.+ ..++.+++... +..+.|.+.|.+.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 468999999999999997 99999999999999987 67888888763 7888999987653
No 74
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.94 E-value=5.6e-05 Score=69.82 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=58.7
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec---cCCC-----CCcEEEEEEeCCCCceeeEEEE
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SSRH-----SDVIVFSVRCGTPQGVATHHLR 528 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s~~-----~~~~~f~~~~~t~~g~~~~~~~ 528 (774)
...+|+++|++|++..|+.|.+.+.. -..|...-+|-..+.+. .... .+.++|.|.++. +++|+.
T Consensus 17 ~~~nwKkRwFvL~~~~L~Yyk~~~~~---~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~----r~~yl~ 89 (106)
T cd01238 17 SPLNYKERLFVLTKSKLSYYEGDFEK---RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE----GTLYVF 89 (106)
T ss_pred CCCCceeEEEEEcCCEEEEECCCccc---ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC----CeEEEE
Confidence 45689999999999999999998753 22333344444334332 1111 245999999975 489999
Q ss_pred ecChhHHHHHHHHHHH
Q psy4897 529 AETHRDLANWARTLVQ 544 (774)
Q Consensus 529 ~et~~dl~~w~~~l~~ 544 (774)
++|..|+..|..+|.+
T Consensus 90 A~s~~er~~WI~ai~~ 105 (106)
T cd01238 90 APTEELRKRWIKALKQ 105 (106)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999999864
No 75
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.93 E-value=3.8e-05 Score=66.56 Aligned_cols=58 Identities=28% Similarity=0.536 Sum_probs=49.9
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE 261 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~ 261 (774)
.|++|..|.+++||+. | |++||+|++|||.++.+ .+++..++.. .+..+.|++.|.+.
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 4689999999999986 6 99999999999999986 7888888875 56788999987654
No 76
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.93 E-value=4.8e-05 Score=71.69 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCceEEEEEEeccceeEEecCCC----CChhcccCcccccceeeEeeecc-----CCCC-CcEEEEEEeCCCCceeeEEE
Q psy4897 458 TDRWVSIFGAVTERELRLYESAP----WSPEAWSTPAHVFPLVSTRLVSS-----SRHS-DVIVFSVRCGTPQGVATHHL 527 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p----~~~~~~~~~~~~~~l~~~r~~~~-----s~~~-~~~~f~~~~~t~~g~~~~~~ 527 (774)
...|+..|++|++..|+||.... ....++......-|+....|.++ +.-. .+++|.|++.++ ..++|
T Consensus 23 ~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg---~e~Lf 99 (119)
T PF15410_consen 23 KRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADG---SEYLF 99 (119)
T ss_dssp ---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS----EEEE
T ss_pred CCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCC---CEEEE
Confidence 56899999999999999999832 22232222233322222333332 2222 239999998865 67999
Q ss_pred EecChhHHHHHHHHHHHHH
Q psy4897 528 RAETHRDLANWARTLVQAT 546 (774)
Q Consensus 528 ~~et~~dl~~w~~~l~~~~ 546 (774)
.+++..||..|..+|..++
T Consensus 100 qa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 100 QASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp E-SSHHHHHHHHHHHHHH-
T ss_pred ECCCHHHHHHHHHHHhhhc
Confidence 9999999999999987654
No 77
>KOG4371|consensus
Probab=97.93 E-value=2.3e-05 Score=93.47 Aligned_cols=183 Identities=24% Similarity=0.269 Sum_probs=130.5
Q ss_pred CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897 19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV 98 (774)
Q Consensus 19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V 98 (774)
..+..|++.|++ +.||..|+.- +..+.|+...-.+.-.+- .|.+||.++.|||+.++..-|.+++.+++..++.|
T Consensus 1146 p~~i~~~~~r~~-~~l~~~~a~~---~~~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1146 PRVIDVELDRNE-GSLGVQIASL---SGRVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRV 1220 (1332)
T ss_pred CccccccCCCCC-CCCCceeccC---ccceehhhcccCCCCCCC-CcchhhhhhhccceeeechhhHHHHHHHhccCceE
Confidence 345556776777 8999998743 234666666655555554 49999999999999999999999999999999999
Q ss_pred EEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEE
Q psy4897 99 ELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRII 178 (774)
Q Consensus 99 ~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V 178 (774)
.|.|.|...+...... .++.+ .+. ....+
T Consensus 1221 ~~~~~r~~~~~~d~~~----------------------------------------~s~~~---~~~--------~l~~~ 1249 (1332)
T KOG4371|consen 1221 VLGVQRPPPAYSDQHH----------------------------------------ASSTS---ASA--------PLISV 1249 (1332)
T ss_pred EEEeecCCcccccchh----------------------------------------hhhhc---ccc--------hhhhh
Confidence 9999987533111000 00000 000 12223
Q ss_pred EEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEE
Q psy4897 179 RVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY 258 (774)
Q Consensus 179 ~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R 258 (774)
.+.+.+..++|+.+.... ...+++|..+...+.|...|.+++||+++..+|+++...+.....+.++---+.+.+++.|
T Consensus 1250 ~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1250 MLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred eeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence 445556678888775432 2467999999999988888899999999999999999988777777776655666666654
No 78
>KOG3606|consensus
Probab=97.93 E-value=2e-05 Score=81.99 Aligned_cols=75 Identities=28% Similarity=0.385 Sum_probs=66.2
Q ss_pred cCCcccEEEEccC---------CCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEE
Q psy4897 30 ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVEL 100 (774)
Q Consensus 30 ~~~gLGfsI~GG~---------e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L 100 (774)
...+|||-|..|. +.-.||||+.+.||+.|+..|-|-+.|.||+|||+.|.+.+.+++-.++-.....+.+
T Consensus 169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIi 248 (358)
T KOG3606|consen 169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLII 248 (358)
T ss_pred CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEE
Confidence 3579999999654 3347999999999999999999999999999999999999999999999887777888
Q ss_pred Eeee
Q psy4897 101 EVGV 104 (774)
Q Consensus 101 ~V~R 104 (774)
+|..
T Consensus 249 TVkP 252 (358)
T KOG3606|consen 249 TVKP 252 (358)
T ss_pred Eecc
Confidence 8854
No 79
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.91 E-value=2.5e-05 Score=83.30 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=55.4
Q ss_pred cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 33 gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
.+|++..--.+...|+.|..+.+++||+++| |++||+|++|||+++.++.....+..-.+.++.++|+|.|++
T Consensus 178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G 250 (259)
T TIGR01713 178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDG 250 (259)
T ss_pred eEeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 5666654222234699999999999999998 999999999999999987553332222235678999999876
No 80
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.87 E-value=9.6e-05 Score=69.59 Aligned_cols=87 Identities=10% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcc--cCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAW--STPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD 534 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~--~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d 534 (774)
...|+++||+|+|..|+||...-.....- .......+|-....... ......++|.|+++.. ..|+|.+.+..|
T Consensus 23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g---~~~lfqA~~~ee 99 (117)
T cd01230 23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADW---REFLFQTSSLKE 99 (117)
T ss_pred CCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCC---CEEEEECCCHHH
Confidence 56899999999999999999874211100 11122332222221111 2233349999999865 789999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4897 535 LANWARTLVQATH 547 (774)
Q Consensus 535 l~~w~~~l~~~~~ 547 (774)
|..|..+|..++.
T Consensus 100 ~~~Wi~~I~~~~~ 112 (117)
T cd01230 100 LQSWIERINVVAA 112 (117)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988774
No 81
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.86 E-value=7.5e-05 Score=68.23 Aligned_cols=81 Identities=19% Similarity=0.380 Sum_probs=55.2
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccc--eeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFP--LVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRD 534 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~--l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d 534 (774)
...|+++||+|++..|++|.......+. +....| |..+.+... +.....++|.|++... .+|+|.+++..|
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~---~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~---~~~~f~a~s~e~ 93 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAEN---VHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDG---AEFLFQAPDEEE 93 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccC---CCCCCcEeccCCEEEecCCcccCceEEEEEecCC---CEEEEECCCHHH
Confidence 5689999999999999999976532111 111112 222222222 2223449999986533 889999999999
Q ss_pred HHHHHHHHHH
Q psy4897 535 LANWARTLVQ 544 (774)
Q Consensus 535 l~~w~~~l~~ 544 (774)
|..|..+|..
T Consensus 94 ~~~Wi~aL~~ 103 (104)
T cd01253 94 MSSWVRALKS 103 (104)
T ss_pred HHHHHHHHhc
Confidence 9999999854
No 82
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.85 E-value=8e-05 Score=68.27 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=60.4
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcc-cccceeeEeeeccCCC-----CCcEEEEEEeCCCCceeeEEEEec
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPA-HVFPLVSTRLVSSSRH-----SDVIVFSVRCGTPQGVATHHLRAE 530 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~-~~~~l~~~r~~~~s~~-----~~~~~f~~~~~t~~g~~~~~~~~e 530 (774)
.-.+|+.+|++|++..|+.|...+.. .|. ..-.|-..+-|+.... ....||.|.+++ ++|||.++
T Consensus 15 ~~K~WkrRwF~L~~~~L~y~K~~~~~-----~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~----rt~~l~A~ 85 (101)
T cd01264 15 FIKRWKTRYFTLSGAQLLFQKGKSKD-----DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD----KTYILKAK 85 (101)
T ss_pred eeecceeEEEEEeCCEEEEEeccCcc-----CCCCceEEcccceEEeeccccccccccCcEEEEEcCC----ceEEEEeC
Confidence 36889999999999999999877543 233 3444444455554321 113899999986 59999999
Q ss_pred ChhHHHHHHHHHHHH
Q psy4897 531 THRDLANWARTLVQA 545 (774)
Q Consensus 531 t~~dl~~w~~~l~~~ 545 (774)
+..|...|.++|..|
T Consensus 86 se~e~e~WI~~i~~a 100 (101)
T cd01264 86 DEKNAEEWLQCLNIA 100 (101)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999876
No 83
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.85 E-value=4.7e-05 Score=90.70 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=58.5
Q ss_pred CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEEC--C---EecCCCCHHHHHHHHHh-cCceEEEEeeec
Q psy4897 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN--G---EDLREATHDEAVKALKR-AGKVVELEVGVG 105 (774)
Q Consensus 32 ~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVN--G---~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~ 105 (774)
.|+|+.+... ...++|..|.|||||+++++|++||+|++|| | .++.+++..+++.+|+. .|..|+|+|.|.
T Consensus 244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 5677777532 3469999999999999995699999999999 4 46778888999999986 588999999874
No 84
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.82 E-value=0.0001 Score=67.17 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=60.1
Q ss_pred CCceEEEEEEecc----ceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897 458 TDRWVSIFGAVTE----RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHR 533 (774)
Q Consensus 458 ~~~w~~~~~~l~~----~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~ 533 (774)
...|+.+|++|++ .+|++|+.++....-...++..- ..+-||++-....+||.|.+++.+ .++|+++++ .
T Consensus 13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~---~V~~v~ds~~~r~~cFel~~~~~~--~~y~~~a~~-~ 86 (98)
T cd01245 13 TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA---YLYPVHDSLFGRPNCFQIVERALP--TVYYSCRSS-E 86 (98)
T ss_pred ccccceeEEEEecCCCCceEEEEcCCCCCCccceeecccc---EEEEccccccCCCeEEEEecCCCC--eEEEEeCCH-H
Confidence 6889999999986 99999999987544334343333 335555554555699999887531 578899999 9
Q ss_pred HHHHHHHHHHH
Q psy4897 534 DLANWARTLVQ 544 (774)
Q Consensus 534 dl~~w~~~l~~ 544 (774)
|...|+.+|..
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 85
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.80 E-value=0.00013 Score=82.19 Aligned_cols=135 Identities=23% Similarity=0.219 Sum_probs=84.5
Q ss_pred EEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEee-ecccccceeeeeeccceeeeeeec
Q psy4897 49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVG-VGYGRCGTLETYVRGQWYKVFVSL 127 (774)
Q Consensus 49 ~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~-R~~~ks~~~~~~~~~~~~~~~~tL 127 (774)
+|..|.|||||+++| |++||+|++|||++|.++.. ....+ .+..+.++|. |++
T Consensus 1 ~I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D--~~~~l--~~e~l~L~V~~rdG--------------------- 54 (433)
T TIGR03279 1 LISAVLPGSIAEELG-FEPGDALVSINGVAPRDLID--YQFLC--ADEELELEVLDANG--------------------- 54 (433)
T ss_pred CcCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHH--HHHHh--cCCcEEEEEEcCCC---------------------
Confidence 367899999999998 99999999999999998854 33333 2456777775 221
Q ss_pred ccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCC-------CCCC
Q psy4897 128 EEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK-------ENKM 200 (774)
Q Consensus 128 ~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~-------~~~~ 200 (774)
+.+.+.+.+.....||+.+.... .++.
T Consensus 55 ----------------------------------------------e~~~l~Ie~~~dedlG~~f~~~~~d~~~~C~N~C 88 (433)
T TIGR03279 55 ----------------------------------------------ESHQIEIEKDLDEDLGLEFTTALFDGLIQCNNRC 88 (433)
T ss_pred ----------------------------------------------eEEEEEEecCCCCCCcEEeccccCCcccccCCcC
Confidence 12344455555666777665422 1122
Q ss_pred C-eEEEEecCCChhhhccCCCCCCEEE---EECCeecCCCCHHHHHHHHHHcCcceEEEEE
Q psy4897 201 P-ILISKIFKGMAADQTEQLYVGDAIL---SVNGEDLREATHDEAVKALKRAGKLVELEVK 257 (774)
Q Consensus 201 p-i~Is~V~pgspA~~aG~L~~GD~Il---aVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~ 257 (774)
. -||.+.-||.--.. .++-.|--+ .=|=..+.+++.+|+-++++..=.++.+.|.
T Consensus 89 ~FCFidQlP~gmR~sL--Y~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~lspl~iSVh 147 (433)
T TIGR03279 89 PFCFIDQQPPGKRESL--YLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVH 147 (433)
T ss_pred ceEeccCCCCCCcCcc--eeccCcchhhhhccceeeecCCCHHHHHHHHHcCCCCEEEEEe
Confidence 2 24444444332211 133334322 2355778889999999999885567777765
No 86
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.79 E-value=0.00019 Score=65.85 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=61.0
Q ss_pred ceEEEEEEeccc------eeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecCh
Q psy4897 460 RWVSIFGAVTER------ELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETH 532 (774)
Q Consensus 460 ~w~~~~~~l~~~------~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~ 532 (774)
.|+++|+||+.. -|..|++-.--......|..+-+|-.+.-|.. .....+++|.|.++. ++++|.+||.
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d----r~f~l~aese 88 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD----EYFAVAAENE 88 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCC----ceEEEEeCCH
Confidence 489999999988 69999886533223466777777776654432 233334999999975 5999999999
Q ss_pred hHHHHHHHHHHH
Q psy4897 533 RDLANWARTLVQ 544 (774)
Q Consensus 533 ~dl~~w~~~l~~ 544 (774)
.|+..|..+|..
T Consensus 89 ~E~~~Wi~~i~~ 100 (101)
T cd01257 89 AEQDSWYQALLE 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999853
No 87
>PRK10898 serine endoprotease; Provisional
Probab=97.79 E-value=6.1e-05 Score=83.87 Aligned_cols=61 Identities=23% Similarity=0.192 Sum_probs=49.5
Q ss_pred CCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 45 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 45 ~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
..|++|..|.+++||+++| |++||+|++|||++|.++........-.+.++.+.|+|.|++
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 3689999999999999998 999999999999999987443322222256888999998865
No 88
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.78 E-value=7e-05 Score=84.47 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=60.9
Q ss_pred CCCcceEEeCCCCC---CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEec
Q psy4897 185 NNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLR 260 (774)
Q Consensus 185 ~~~LGfsi~gg~~~---~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~ 260 (774)
..++|+.+...... ..+++|..|.++|||+++| |++||+|++|||++|.+++..++...++. .+..+.|+|.|.+
T Consensus 84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 34677766432111 1378999999999999998 99999999999999999888888888875 6788999998754
Q ss_pred c
Q psy4897 261 E 261 (774)
Q Consensus 261 ~ 261 (774)
.
T Consensus 163 ~ 163 (389)
T PLN00049 163 E 163 (389)
T ss_pred E
Confidence 3
No 89
>KOG0609|consensus
Probab=97.76 E-value=6.9e-05 Score=85.08 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=76.0
Q ss_pred CCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceE
Q psy4897 19 RDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVV 98 (774)
Q Consensus 19 ~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V 98 (774)
..+.-|.+.++.+..+|.+|+--. ...++|..|..|+.|++.|.|++||.|++|||++|.+..-.++..+|+.+...+
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e--~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~i 198 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEE--DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSI 198 (542)
T ss_pred ceeEEEEEeecCCCccceEEEecc--CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcE
Confidence 447788898999999999998432 237999999999999999999999999999999999999999999999998999
Q ss_pred EEEeeec
Q psy4897 99 ELEVGVG 105 (774)
Q Consensus 99 ~L~V~R~ 105 (774)
++.|...
T Consensus 199 tfkiiP~ 205 (542)
T KOG0609|consen 199 TFKIIPS 205 (542)
T ss_pred EEEEccc
Confidence 9999643
No 90
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.70 E-value=8.1e-05 Score=82.22 Aligned_cols=72 Identities=28% Similarity=0.480 Sum_probs=59.6
Q ss_pred CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE 261 (774)
Q Consensus 186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~ 261 (774)
.++|+.+... ..+++|..|.+++||+++| |++||+|++|||+++.+++..++...++. .+..+.|+|.|.+.
T Consensus 51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEEEEE---CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 4577776532 2468999999999999998 99999999999999999877788887765 67889999987643
No 91
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.68 E-value=0.00011 Score=83.89 Aligned_cols=58 Identities=33% Similarity=0.419 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~ 106 (774)
.|++|.+|.++|||+++| |++||+|++|||++|.++ .+...++++ .++.+.|+|.|++
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 689999999999999998 999999999999999976 455666664 5788999998875
No 92
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00011 Score=83.11 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=64.0
Q ss_pred CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEec
Q psy4897 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLR 260 (774)
Q Consensus 185 ~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~ 260 (774)
-.++|+.+.... ...+.|..+.+++||+++| |++||.|++|||.++.+++.++++..|+. .|..|+|++.|..
T Consensus 99 ~~GiG~~i~~~~--~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 99 FGGIGIELQMED--IGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred ccceeEEEEEec--CCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 567778776532 1678999999999999999 99999999999999999999999999987 7899999999863
No 93
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.65 E-value=8.5e-05 Score=82.67 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=49.2
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~ 106 (774)
.|++|..|.+++||+++| |++||+|++|||++|.++.. ....++ +.++.+.|+|.|++
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEE--LMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999998 99999999999999998744 334444 46889999998865
No 94
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.65 E-value=0.00028 Score=64.92 Aligned_cols=86 Identities=14% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
...|+++|++|+|..|+.|.+.+.+. ..|.....|....+... .-...+++|.+.+++..|...|||++||..+.+
T Consensus 17 ~K~~KrrwF~lk~~~L~YyK~kee~~---~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya 93 (106)
T cd01237 17 LKGYKQYWFTFRDTSISYYKSKEDSN---GAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYA 93 (106)
T ss_pred hhhheeEEEEEeCCEEEEEccchhcC---CCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHH
Confidence 46799999999999999998877432 45555555555444322 111335888898888889899999999999999
Q ss_pred HHHHHHHHHH
Q psy4897 537 NWARTLVQAT 546 (774)
Q Consensus 537 ~w~~~l~~~~ 546 (774)
.|..++..|.
T Consensus 94 ~Wmaa~rlas 103 (106)
T cd01237 94 KWMAACRLAS 103 (106)
T ss_pred HHHHHHHHhh
Confidence 9999877664
No 95
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.63 E-value=0.00027 Score=64.54 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=61.3
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec---cCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SSRHSDVIVFSVRCGTPQGVATHHLRAETHRD 534 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d 534 (774)
...|+.+|++|+++.|+.|+++. ..|..+-||-..+.|. .......++|.|.++. .++|+.+++..|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~----r~~yi~a~s~~E 87 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQ------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED----DTMQLQFEAPVE 87 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCC------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC----CeEEEECCCHHH
Confidence 46899999999999999999765 3677777777766443 2233334899999985 489999999999
Q ss_pred HHHHHHHHHH
Q psy4897 535 LANWARTLVQ 544 (774)
Q Consensus 535 l~~w~~~l~~ 544 (774)
...|..+|-.
T Consensus 88 ~~~Wi~al~k 97 (98)
T cd01244 88 ATDWLNALEK 97 (98)
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 96
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.62 E-value=0.00033 Score=65.40 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCceEEEEEEec-cceeEEecCCCCChhc---ccCcccccceeeEe-------e--ec---cCCCCCcEEEEEEeCCCCc
Q psy4897 458 TDRWVSIFGAVT-ERELRLYESAPWSPEA---WSTPAHVFPLVSTR-------L--VS---SSRHSDVIVFSVRCGTPQG 521 (774)
Q Consensus 458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~---~~~~~~~~~l~~~r-------~--~~---~s~~~~~~~f~~~~~t~~g 521 (774)
.+.|+++|+||. |+-|..|..|+..+.. ...+...++--..+ + ++ .....+.-+|.+.|||
T Consensus 13 ~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~--- 89 (112)
T PF15413_consen 13 GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPT--- 89 (112)
T ss_dssp -S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS---
T ss_pred CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCcEEECCC---
Confidence 578999999999 9999999994432110 00111111111111 1 11 1122223789999987
Q ss_pred eeeEEEEecChhHHHHHHHHHHHH
Q psy4897 522 VATHHLRAETHRDLANWARTLVQA 545 (774)
Q Consensus 522 ~~~~~~~~et~~dl~~w~~~l~~~ 545 (774)
++++|++||..|...|..+|+.|
T Consensus 90 -kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 90 -KTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp --EEEEEESSHHHHHHHHHHHHH-
T ss_pred -cEEEEEECCHHHHHHHHHHHHhC
Confidence 48999999999999999999875
No 97
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.60 E-value=0.00019 Score=76.58 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897 199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV 262 (774)
Q Consensus 199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~ 262 (774)
..|+.|..+.++++|+++| |++||+|++|||+++.+ .+++.+++.+ .++.++|+|.|.++.
T Consensus 190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 4689999999999999998 99999999999999988 7888888876 557899999997753
No 98
>KOG3542|consensus
Probab=97.58 E-value=9.8e-05 Score=84.64 Aligned_cols=85 Identities=27% Similarity=0.466 Sum_probs=73.8
Q ss_pred ccceEEEEEecc-CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897 172 ENQKRIIRVKKS-ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 250 (774)
Q Consensus 172 ~~~~r~V~L~k~-~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~ 250 (774)
..+.|.+.+.+. ....+-|.+.||.+...+|||..|.||+.|++.| |+.||+|++|||++..+.+...+..+|++. -
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-t 610 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-T 610 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-c
Confidence 446788888873 4667999999999999999999999999999998 999999999999999999999999999874 4
Q ss_pred ceEEEEEE
Q psy4897 251 LVELEVKY 258 (774)
Q Consensus 251 ~V~L~V~R 258 (774)
.++|+|+.
T Consensus 611 hLtltvKt 618 (1283)
T KOG3542|consen 611 HLTLTVKT 618 (1283)
T ss_pred eEEEEEec
Confidence 56676653
No 99
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.58 E-value=0.00056 Score=62.60 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN 537 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~ 537 (774)
.++|+++|+.|-+.-|+.|..-|.....=.+....++|-...|...+.....++|.|++.+ +++++.++|..|...
T Consensus 15 ~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~----rsf~l~A~s~eEk~~ 90 (101)
T cd01219 15 TEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNLERPHSFLVSGKQ----RCLELQARTQKEKND 90 (101)
T ss_pred CCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCCCCcCceEEEecCC----cEEEEEcCCHHHHHH
Confidence 4689999999998844444422321111122222333333344332223335999998775 699999999999999
Q ss_pred HHHHHHHHH
Q psy4897 538 WARTLVQAT 546 (774)
Q Consensus 538 w~~~l~~~~ 546 (774)
|..+|..++
T Consensus 91 W~~ai~~~i 99 (101)
T cd01219 91 WVQAIFSII 99 (101)
T ss_pred HHHHHHHHh
Confidence 999998875
No 100
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.56 E-value=0.00023 Score=81.79 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=48.2
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~ 106 (774)
.+++|..|.++|||+++| |++||+|++|||++|.++.. ....++. .++.+.++|.|++
T Consensus 221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQT--FVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred cCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHH--HHHHHHhCCCCEEEEEEEECC
Confidence 358999999999999998 99999999999999987644 4445544 5678999998875
No 101
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.55 E-value=0.0016 Score=63.11 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=57.2
Q ss_pred cccCCCCcEEEEEEee----cCCcccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCCC-CCEEEEECCEecCCCCHH
Q psy4897 14 FFFSSRDFYSENYKYT----ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLREATHD 85 (774)
Q Consensus 14 ~~~~s~~~~~V~l~rk----~~~gLGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~Lqv-GD~ILsVNG~~V~~~sh~ 85 (774)
+-.+...+++|.+.-. +.+.||++|.--.-. ..++-|-+|.|||||++|| |++ .|-|+.+|+..+.+....
T Consensus 4 ~~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l 82 (138)
T PF04495_consen 4 YNAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDL 82 (138)
T ss_dssp EETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHH
T ss_pred EECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHH
Confidence 3456677788887542 358999999844332 3579999999999999998 998 699999999988865433
Q ss_pred HHHHHHH-hcCceEEEEeee
Q psy4897 86 EAVKALK-RAGKVVELEVGV 104 (774)
Q Consensus 86 eaV~lLk-~ag~~V~L~V~R 104 (774)
...++ ..+..+.|.|..
T Consensus 83 --~~~v~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 83 --FELVEANENKPLQLYVYN 100 (138)
T ss_dssp --HHHHHHTTTS-EEEEEEE
T ss_pred --HHHHHHcCCCcEEEEEEE
Confidence 33343 456778888853
No 102
>PRK10139 serine endoprotease; Provisional
Probab=97.52 E-value=0.0002 Score=82.40 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=50.2
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
.|++|..|.++|||+++| |++||+|++|||++|.++ .+...++++.++.+.|+|.|++
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence 579999999999999998 999999999999999987 4556666665678899998875
No 103
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.52 E-value=0.00019 Score=81.83 Aligned_cols=58 Identities=31% Similarity=0.434 Sum_probs=49.2
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~ 106 (774)
.+++|.+|.++|||+++| |++||+|++|||++|.++ .+....++. .++.+.++|.|++
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECC
Confidence 478999999999999998 999999999999999976 455566655 5677899998865
No 104
>PRK10942 serine endoprotease; Provisional
Probab=97.47 E-value=0.00025 Score=81.93 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
.|++|..|.++|||+++| |++||+|++|||++|.++ .+...++++.+..+.|+|.|.+
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence 589999999999999998 999999999999999986 5666677776688999998875
No 105
>KOG0609|consensus
Probab=97.45 E-value=0.00034 Score=79.57 Aligned_cols=84 Identities=26% Similarity=0.441 Sum_probs=74.8
Q ss_pred ceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceE
Q psy4897 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE 253 (774)
Q Consensus 174 ~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~ 253 (774)
..+.+.+.|.....+|..++.... ..++|.+|..|+.|++.|.|++||.|++|||++|.+....++..+++...+.++
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~--~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it 199 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEED--TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT 199 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccC--CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence 478888999888999999986422 279999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEe
Q psy4897 254 LEVKYL 259 (774)
Q Consensus 254 L~V~R~ 259 (774)
+.|...
T Consensus 200 fkiiP~ 205 (542)
T KOG0609|consen 200 FKIIPS 205 (542)
T ss_pred EEEccc
Confidence 988654
No 106
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.36 E-value=0.00034 Score=83.44 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=57.7
Q ss_pred CCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECC-----eecCCCCHHHHHHHHHH-cCcceEEEEEEe
Q psy4897 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG-----EDLREATHDEAVKALKR-AGKLVELEVKYL 259 (774)
Q Consensus 186 ~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG-----~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~ 259 (774)
.++|+.+... ...++|..|.||+||+++++|++||+|++||+ .++.+++.++++.+|+. .|..|.|+|.|.
T Consensus 244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4567766542 23589999999999999845999999999994 35667888999999997 788999999873
No 107
>KOG3605|consensus
Probab=97.27 E-value=0.00023 Score=81.88 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=64.6
Q ss_pred ccCCCCcEEEEEEeecC-CcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897 15 FFSSRDFYSENYKYTEN-NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93 (774)
Q Consensus 15 ~~~s~~~~~V~l~rk~~-~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ 93 (774)
.+.+-.+.+|.|.|.+- .-|||++..| +|-++..|+.|+| |++++|-+|++|||++|....|+..|++|..
T Consensus 731 iV~cpPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAER-GGVRVGHRIIEINgQSVVA~pHekIV~lLs~ 802 (829)
T KOG3605|consen 731 IVSCPPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVQLLSN 802 (829)
T ss_pred EecCCCceEEEeecccchhhccceeeCc-------Eeehhhcccchhc-cCceeeeeEEEECCceEEeccHHHHHHHHHH
Confidence 34566777788876654 6899999755 4778999999999 5599999999999999999999999999998
Q ss_pred cCceEEEE
Q psy4897 94 AGKVVELE 101 (774)
Q Consensus 94 ag~~V~L~ 101 (774)
+-..+.+.
T Consensus 803 aVGEIhMK 810 (829)
T KOG3605|consen 803 AVGEIHMK 810 (829)
T ss_pred hhhhhhhh
Confidence 74444433
No 108
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.27 E-value=0.00059 Score=76.05 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE 261 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~ 261 (774)
.+++|..|.+++||+++| |++||+|++|||+++.+ .+++.+.++. .++.+.|+|.|.++
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 579999999999999998 99999999999999987 7888888875 67889999988764
No 109
>PRK10898 serine endoprotease; Provisional
Probab=97.21 E-value=0.00079 Score=75.10 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE 261 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~ 261 (774)
.+++|..|.+++||+++| |++||+|++|||++|.+ ..++.+.+.. .++.+.|+|.|.++
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 689999999999999998 99999999999999987 6777777764 67889999998654
No 110
>KOG4407|consensus
Probab=97.17 E-value=0.00044 Score=84.23 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=105.7
Q ss_pred cccccCCCCcEEEEEEeecCCcccEEEEc--------------------cCCC-----CCCeEEEEecCCCHHhhhCCCC
Q psy4897 12 EAFFFSSRDFYSENYKYTENNGLGISIKG--------------------GKEN-----KMPILISKIFKGMAADQTEQLY 66 (774)
Q Consensus 12 ~~~~~~s~~~~~V~l~rk~~~gLGfsI~G--------------------G~e~-----~~gi~Vs~V~pGSpAaraG~Lq 66 (774)
.+..+.+....-+.+.|+++.||||+++- |... ...+++.++..++|+..+| +.
T Consensus 37 a~~~a~S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~ 115 (1973)
T KOG4407|consen 37 AALAASSIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SS 115 (1973)
T ss_pred hhhhhccCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cc
Confidence 34455677777778889999999999872 2211 1357888888999999987 99
Q ss_pred CCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeeeecccccccccccCCCCCcccc
Q psy4897 67 VGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVL 146 (774)
Q Consensus 67 vGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~tL~~~~lsis~~~~~~~~t~~ 146 (774)
.||.|..|||..+.+.+. .....
T Consensus 116 s~~~v~~itG~e~~~~TS-~~~~~-------------------------------------------------------- 138 (1973)
T KOG4407|consen 116 SSVGVAGITGLEPTSPTS-LPPYQ-------------------------------------------------------- 138 (1973)
T ss_pred cccceeeecccccCCCcc-ccHHH--------------------------------------------------------
Confidence 999999999988765421 00000
Q ss_pred cCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEE
Q psy4897 147 NGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226 (774)
Q Consensus 147 ~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~Il 226 (774)
.+. ...+||..|.++++|..+- |+.||+|+
T Consensus 139 ----------------------------------vk~---------------~eT~~~~eV~~n~~~~~a~-LQ~~~~V~ 168 (1973)
T KOG4407|consen 139 ----------------------------------VKA---------------METIFIKEVQANGPAHYAN-LQTGDRVL 168 (1973)
T ss_pred ----------------------------------Hhh---------------hhhhhhhhhccCChhHHHh-hhccceeE
Confidence 000 1236788899999999985 99999999
Q ss_pred EECCeecCCCCHHHHHHHHHHcCcceEEEEEE
Q psy4897 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKY 258 (774)
Q Consensus 227 aVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R 258 (774)
.||.+++..+...+++..+++....++|.|..
T Consensus 169 ~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P 200 (1973)
T KOG4407|consen 169 MVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP 200 (1973)
T ss_pred EeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence 99999999999999999999977777777653
No 111
>KOG3834|consensus
Probab=96.92 E-value=0.013 Score=65.44 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=96.4
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFV 125 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~ 125 (774)
.|.-|-+|.++|+|.++|-.---|-|++|||..+..- .+.....|+..-+.|+|+|....
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~k------------------- 74 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSK------------------- 74 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecc-------------------
Confidence 4677889999999999985555699999999999754 33344455555556888885321
Q ss_pred ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEEeccCCCC---cceEEeCCCC---CC
Q psy4897 126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNG---LGISIKGGKE---NK 199 (774)
Q Consensus 126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L~k~~~~~---LGfsi~gg~~---~~ 199 (774)
....|.+.+.+....+ ||++++=-.. ..
T Consensus 75 ----------------------------------------------t~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~ 108 (462)
T KOG3834|consen 75 ----------------------------------------------TQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVE 108 (462)
T ss_pred ----------------------------------------------cceeEEEEecccccccccccceEEEeccCccchh
Confidence 0124555555544444 7777653111 01
Q ss_pred CCeEEEEecCCChhhhccCCC-CCCEEEEE-CCeecCCCCHHHHHHHHHH-cCcceEEEEEE
Q psy4897 200 MPILISKIFKGMAADQTEQLY-VGDAILSV-NGEDLREATHDEAVKALKR-AGKLVELEVKY 258 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~-~GD~IlaV-NG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R 258 (774)
.---|-+|.+++||+.+| |+ -+|-|+-+ |.+-- . .+++..+|.. .++.+.|.|..
T Consensus 109 ~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~-~--~eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 109 SVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMH-E--EEDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred heeeeeecCCCCHHHhcc-cccccceEecchhhhcc-c--hHHHHHHHHhccCCCcceeEee
Confidence 112377889999999998 77 67999988 44433 2 5788888876 67888887754
No 112
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.90 E-value=0.0047 Score=58.46 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=56.8
Q ss_pred CCCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeE-eeeccC-----------C-CCCcEEEEEEeCCCCce
Q psy4897 456 DSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST-RLVSSS-----------R-HSDVIVFSVRCGTPQGV 522 (774)
Q Consensus 456 ~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~-r~~~~s-----------~-~~~~~~f~~~~~t~~g~ 522 (774)
....+|+++|++|+++.|..|++|.. ..|...+-|-.- .+.... . ....+.|.|.+++
T Consensus 28 ~~~~~w~kRWFvlr~s~L~Y~~~~~~-----~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~---- 98 (121)
T cd01254 28 RMCDRWQKRWFIVKESFLAYMDDPSS-----AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSN---- 98 (121)
T ss_pred ccccCCcceeEEEeCCEEEEEcCCCC-----CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCC----
Confidence 35679999999999999999998774 344433322110 000000 1 1223899999986
Q ss_pred eeEEEEecChhHHHHHHHHHHHH
Q psy4897 523 ATHHLRAETHRDLANWARTLVQA 545 (774)
Q Consensus 523 ~~~~~~~et~~dl~~w~~~l~~~ 545 (774)
+++.|+++|.+++..|..+|..|
T Consensus 99 R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 99 RSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cEEEEEeCCHHHHHHHHHHHHhC
Confidence 58999999999999999999764
No 113
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.90 E-value=0.0032 Score=70.81 Aligned_cols=69 Identities=20% Similarity=0.464 Sum_probs=51.9
Q ss_pred cCCcccEEEEccCCCCCCeEEEEec--------CCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc-CceEEE
Q psy4897 30 ENNGLGISIKGGKENKMPILISKIF--------KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA-GKVVEL 100 (774)
Q Consensus 30 ~~~gLGfsI~GG~e~~~gi~Vs~V~--------pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~a-g~~V~L 100 (774)
.+.++|+.+. ..|++|.... .++||+++| |++||+|++|||++|.++ .+...+++.. ++.+.|
T Consensus 94 gG~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~L 165 (402)
T TIGR02860 94 GGQSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTL 165 (402)
T ss_pred CCEEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEE
Confidence 4556666664 3577775442 368999987 999999999999999977 4455666654 678999
Q ss_pred Eeeecc
Q psy4897 101 EVGVGY 106 (774)
Q Consensus 101 ~V~R~~ 106 (774)
+|.|+.
T Consensus 166 tV~R~G 171 (402)
T TIGR02860 166 TIERGG 171 (402)
T ss_pred EEEECC
Confidence 998865
No 114
>KOG1421|consensus
Probab=96.88 E-value=0.015 Score=67.91 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=90.5
Q ss_pred CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-cCceEEEEeeecccccceeeeeeccceeeeee
Q psy4897 47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKVVELEVGVGYGRCGTLETYVRGQWYKVFV 125 (774)
Q Consensus 47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~-ag~~V~L~V~R~~~ks~~~~~~~~~~~~~~~~ 125 (774)
-++|..|.++|||++ .|++||.+++||+.-+.+. .++.++|-. .|+.+.|+|.|.+. .+++.+.
T Consensus 304 mLvV~~vL~~gpa~k--~Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggq---elel~vt-------- 368 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQ---ELELTVT-------- 368 (955)
T ss_pred eEEEEEeccCCchhh--ccCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCE---EEEEEEE--------
Confidence 478899999999998 4999999999998888754 555555544 68999999999763 1222111
Q ss_pred ecccccccccccCCCCCcccccCcCCCCCCCCCCcCCCCCCCCCccccceEEEEE--------eccCCCCcceEEeCCCC
Q psy4897 126 SLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRV--------KKSENNGLGISIKGGKE 197 (774)
Q Consensus 126 tL~~~~lsis~~~~~~~~t~~~g~l~~p~~~s~s~~~~s~~~pe~~~~~~r~V~L--------~k~~~~~LGfsi~gg~~ 197 (774)
.++.... + ..|.+++ ..+ ...+++-.
T Consensus 369 ----------vqdlh~i-----t-------------------------p~R~levcGav~hdlsyq-~ar~y~lP----- 402 (955)
T KOG1421|consen 369 ----------VQDLHGI-----T-------------------------PDRFLEVCGAVFHDLSYQ-LARLYALP----- 402 (955)
T ss_pred ----------eccccCC-----C-------------------------CceEEEEcceEecCCCHH-HHhhcccc-----
Confidence 0000000 0 0111111 001 11122111
Q ss_pred CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEE
Q psy4897 198 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEV 256 (774)
Q Consensus 198 ~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V 256 (774)
-.|+||++=. |+++.+.+ ++ |-.|.+||++++.+ .+.++..++. .+..|.+..
T Consensus 403 -~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPd--LdaFidvlk~L~dg~rV~vry 457 (955)
T KOG1421|consen 403 -VEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPD--LDAFIDVLKELPDGARVPVRY 457 (955)
T ss_pred -cCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCC--HHHHHHHHHhccCCCeeeEEE
Confidence 1267888866 77887655 66 89999999999988 7888888887 344555443
No 115
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.81 E-value=0.0023 Score=73.00 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=53.7
Q ss_pred EEEEEEeecCC--cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEE
Q psy4897 22 YSENYKYTENN--GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVE 99 (774)
Q Consensus 22 ~~V~l~rk~~~--gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~ 99 (774)
+-.++..++.. .||+.+.. ++....|..|.++|||++|| |.+||.|++|||.+-.-. -.++++.+.
T Consensus 439 ~gL~~~~~~~~~~~LGl~v~~---~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~--------~~~~~d~i~ 506 (558)
T COG3975 439 FGLTFTPKPREAYYLGLKVKS---EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLD--------RYKVNDKIQ 506 (558)
T ss_pred cceEEEecCCCCcccceEecc---cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccc--------ccccccceE
Confidence 45566555554 88888762 34578999999999999998 999999999999922111 124667788
Q ss_pred EEeeecc
Q psy4897 100 LEVGVGY 106 (774)
Q Consensus 100 L~V~R~~ 106 (774)
+++.+.+
T Consensus 507 v~~~~~~ 513 (558)
T COG3975 507 VHVFREG 513 (558)
T ss_pred EEEccCC
Confidence 8887654
No 116
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.78 E-value=0.005 Score=59.69 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=55.9
Q ss_pred ceEEEEEeccC----CCCcceEEeCCCC---CCCCeEEEEecCCChhhhccCCCC-CCEEEEECCeecCCCCHHHHHHHH
Q psy4897 174 QKRIIRVKKSE----NNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYV-GDAILSVNGEDLREATHDEAVKAL 245 (774)
Q Consensus 174 ~~r~V~L~k~~----~~~LGfsi~gg~~---~~~pi~Is~V~pgspA~~aG~L~~-GD~IlaVNG~~V~~~t~~e~v~~L 245 (774)
..|.+.+.+.. .+.+|++++-... .....-|-+|.|+|||+++| |++ .|-|+.+++..+.+ .+++.+.+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v 86 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELV 86 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHH
Confidence 46777776532 4678999864322 24567899999999999998 998 69999999988886 57888888
Q ss_pred HH-cCcceEEEEEEe
Q psy4897 246 KR-AGKLVELEVKYL 259 (774)
Q Consensus 246 k~-~g~~V~L~V~R~ 259 (774)
++ .++++.|.|-..
T Consensus 87 ~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 87 EANENKPLQLYVYNS 101 (138)
T ss_dssp HHTTTS-EEEEEEET
T ss_pred HHcCCCcEEEEEEEC
Confidence 87 678888888643
No 117
>KOG0606|consensus
Probab=96.77 E-value=0.0025 Score=77.90 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=67.6
Q ss_pred cEEEEEEeecCCcccEEEE------ccCC-CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897 21 FYSENYKYTENNGLGISIK------GGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93 (774)
Q Consensus 21 ~~~V~l~rk~~~gLGfsI~------GG~e-~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ 93 (774)
+..-..+...+.+|||++. |+.+ ...-..|..|.+|+||..+| |+.||.|+.|||+.|.+..|.+++.+|-+
T Consensus 626 ~~ppI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~ 704 (1205)
T KOG0606|consen 626 LRPPITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLK 704 (1205)
T ss_pred cCCceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHh
Confidence 3333445778899998876 3333 12347889999999999987 99999999999999999999999999999
Q ss_pred cCceEEEEee
Q psy4897 94 AGKVVELEVG 103 (774)
Q Consensus 94 ag~~V~L~V~ 103 (774)
.|..|.+.+.
T Consensus 705 ~gn~v~~~tt 714 (1205)
T KOG0606|consen 705 SGNKVTLRTT 714 (1205)
T ss_pred cCCeeEEEee
Confidence 9999888874
No 118
>KOG1320|consensus
Probab=96.72 E-value=0.0044 Score=70.78 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=47.3
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC--cceEEEEEEe
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--KLVELEVKYL 259 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g--~~V~L~V~R~ 259 (774)
++++|++|.+++++...+ +++||+|++|||++|.+ ..++..+|+... +.|.++.++.
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEecC
Confidence 468999999999999886 99999999999999999 678888888743 4555555543
No 119
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0043 Score=68.85 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=53.4
Q ss_pred CCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 44 NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 44 ~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
...|++|..|.+++||+++| ++.||.|+++||+++.+.............++.+.+.+.|++
T Consensus 268 ~~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g 329 (347)
T COG0265 268 VAAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGG 329 (347)
T ss_pred CCCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECC
Confidence 34579999999999999998 999999999999999988666655555567889999999874
No 120
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.66 E-value=0.0088 Score=53.60 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=40.5
Q ss_pred CCeEEEEecCC--------CHHhhhCC-CCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 46 MPILISKIFKG--------MAADQTEQ-LYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 46 ~gi~Vs~V~pG--------SpAaraG~-LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
.+..|.+|.+| ||-.+.|- +++||.|++|||++|..-. .-...+..++++.|.|+|.+..
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~-~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA-NPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB--HHHHHHTTTTSEEEEEEE-ST
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC-CHHHHhcccCCCEEEEEEecCC
Confidence 56889999987 77777762 5699999999999998642 2334455578999999998754
No 121
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.56 E-value=0.0034 Score=71.13 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=43.0
Q ss_pred EEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEE-Eec
Q psy4897 204 ISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK-YLR 260 (774)
Q Consensus 204 Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~-R~~ 260 (774)
|..|.|+|+|+++| |++||+|++|||+++.+ +.++...+. +..+.|+|. |.+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~~rdG 54 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVLDANG 54 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEEcCCC
Confidence 67899999999998 99999999999999987 677766663 467888886 443
No 122
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.52 E-value=0.009 Score=67.30 Aligned_cols=69 Identities=17% Similarity=0.426 Sum_probs=54.3
Q ss_pred CCCcceEEeCCCCCCCCeEEEEec--------CCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEE
Q psy4897 185 NNGLGISIKGGKENKMPILISKIF--------KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELE 255 (774)
Q Consensus 185 ~~~LGfsi~gg~~~~~pi~Is~V~--------pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~ 255 (774)
...+|+.+.. .|++|.... .++||+++| |++||.|++|||+++.+ .+++.+++++ .++.+.|+
T Consensus 95 G~~iGI~l~t-----~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~Lt 166 (402)
T TIGR02860 95 GQSIGVKLNT-----KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLT 166 (402)
T ss_pred CEEEEEEEec-----CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEE
Confidence 4556776643 467765542 258999997 99999999999999987 7899999887 56789999
Q ss_pred EEEecc
Q psy4897 256 VKYLRE 261 (774)
Q Consensus 256 V~R~~~ 261 (774)
|.|..+
T Consensus 167 V~R~Ge 172 (402)
T TIGR02860 167 IERGGK 172 (402)
T ss_pred EEECCE
Confidence 988765
No 123
>KOG3129|consensus
Probab=96.46 E-value=0.0062 Score=62.02 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=45.2
Q ss_pred eEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hcCceEEEEeeeccc
Q psy4897 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKVVELEVGVGYG 107 (774)
Q Consensus 48 i~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk--~ag~~V~L~V~R~~~ 107 (774)
++|..|.|+|||+++| |++||.|+.+..+.--+....+-+..+. .-+..+.++|.|.+.
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~ 201 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ 201 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence 7899999999999987 9999999999876666555333333333 346778899988763
No 124
>KOG0930|consensus
Probab=96.41 E-value=0.013 Score=61.88 Aligned_cols=84 Identities=17% Similarity=0.294 Sum_probs=57.0
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCc--------------e-
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG--------------V- 522 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g--------------~- 522 (774)
-.+|+++|++||+.|||.|+-....- |-..-||...-+.+...+....||.+-.++..| |
T Consensus 274 vktWKrRWFiLtdNCLYYFe~tTDKE-----PrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVE 348 (395)
T KOG0930|consen 274 VKTWKRRWFILTDNCLYYFEYTTDKE-----PRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVE 348 (395)
T ss_pred ccchhheeEEeecceeeeeeeccCCC-----CCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEe
Confidence 46899999999999999999877543 444444443222222233344777765544422 2
Q ss_pred ---eeEEEEecChhHHHHHHHHHHHHH
Q psy4897 523 ---ATHHLRAETHRDLANWARTLVQAT 546 (774)
Q Consensus 523 ---~~~~~~~et~~dl~~w~~~l~~~~ 546 (774)
..+-.++-|..|+-.|.++|..++
T Consensus 349 G~H~vYrIsA~~~Ee~~~Wi~sI~a~i 375 (395)
T KOG0930|consen 349 GNHSVYRISAPTPEEKDEWIKSIKAAI 375 (395)
T ss_pred ccceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 256678899999999999998775
No 125
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.33 E-value=0.01 Score=53.11 Aligned_cols=60 Identities=28% Similarity=0.375 Sum_probs=40.7
Q ss_pred CCeEEEEecCC--------Chhhhcc-CCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEecc
Q psy4897 200 MPILISKIFKG--------MAADQTE-QLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLRE 261 (774)
Q Consensus 200 ~pi~Is~V~pg--------spA~~aG-~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~ 261 (774)
....|.+|.++ ||..+.| .+++||.|++|||+++.. -.+...+|.. +++.|.|+|.+...
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEEecCCC
Confidence 34678888886 6666665 367999999999999987 4567777776 88999999987653
No 126
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.32 E-value=0.032 Score=51.04 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=56.0
Q ss_pred ceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHHHH
Q psy4897 460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLANW 538 (774)
Q Consensus 460 ~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w 538 (774)
.|.++|+...|- ++|-.+-.+...-.++-...||....|...... ...+||.|.+.. +++.+.+.|..|...|
T Consensus 16 ~~~R~~FLFnD~--LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~----ks~~l~A~s~~Ek~~W 89 (99)
T cd01220 16 LQQRMFFLFSDL--LLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQ----CAITVAASTRAEKEKW 89 (99)
T ss_pred CceEEEEEccce--EEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCC----eEEEEECCCHHHHHHH
Confidence 467888888874 444433222222335667777777765433221 224999998653 6899999999999999
Q ss_pred HHHHHHHHH
Q psy4897 539 ARTLVQATH 547 (774)
Q Consensus 539 ~~~l~~~~~ 547 (774)
..+|.+|+.
T Consensus 90 i~~i~~aI~ 98 (99)
T cd01220 90 LADLSKAIA 98 (99)
T ss_pred HHHHHHHhh
Confidence 999998873
No 127
>PF15409 PH_8: Pleckstrin homology domain
Probab=96.21 E-value=0.031 Score=50.21 Aligned_cols=77 Identities=17% Similarity=0.312 Sum_probs=55.5
Q ss_pred CCCceEEEEEEe--ccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897 457 STDRWVSIFGAV--TERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRD 534 (774)
Q Consensus 457 ~~~~w~~~~~~l--~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d 534 (774)
.-|.|.++|++| ++..|-.|-+++..+--++.|+..- ++ |...+...|.|.+|. +.+++.+.+..|
T Consensus 10 ~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a------~i--s~~~~~~~I~idsg~----~i~hLKa~s~~~ 77 (89)
T PF15409_consen 10 PLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLA------VI--SANKKSRRIDIDSGD----EIWHLKAKSQED 77 (89)
T ss_pred cCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccce------EE--EecCCCCEEEEEcCC----eEEEEEcCCHHH
Confidence 468899999999 9999999998875422222222111 22 222344789998874 689999999999
Q ss_pred HHHHHHHHHHH
Q psy4897 535 LANWARTLVQA 545 (774)
Q Consensus 535 l~~w~~~l~~~ 545 (774)
...|+.+|..|
T Consensus 78 f~~Wv~aL~~a 88 (89)
T PF15409_consen 78 FQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHhc
Confidence 99999999764
No 128
>KOG1738|consensus
Probab=96.15 E-value=0.0064 Score=70.58 Aligned_cols=75 Identities=25% Similarity=0.409 Sum_probs=67.2
Q ss_pred ecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeec
Q psy4897 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVG 105 (774)
Q Consensus 29 k~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~ 105 (774)
+++.|+|+-|..-.++ .++|+++.+++||+..+.|..||.|++||+.-|.+|.+..+|..|+....-|.++|...
T Consensus 210 kp~eglg~~I~Ssydg--~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKr 284 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYDG--PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKR 284 (638)
T ss_pred CcccCCceEEeeecCC--ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeecc
Confidence 7889999999876654 69999999999999999999999999999999999999999999998877777777544
No 129
>KOG0690|consensus
Probab=96.12 E-value=0.0093 Score=64.69 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCceEEEEEEec-cceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVT-ERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~-~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
-..|+|+|++|+ |..|+=|.+-|-...----|+..|.+-.+-+++. +......|-|||-.=..|--..|.||+..+..
T Consensus 28 IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~-erPrPntFiiRcLQWTTVIERTF~ves~~eRq 106 (516)
T KOG0690|consen 28 IKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKT-ERPRPNTFIIRCLQWTTVIERTFYVESAEERQ 106 (516)
T ss_pred hhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhc-cCCCCceEEEEeeeeeeeeeeeeecCCHHHHH
Confidence 478999888875 6778889999988777777888887666555543 22223789999875556777899999999999
Q ss_pred HHHHHHHHHH
Q psy4897 537 NWARTLVQAT 546 (774)
Q Consensus 537 ~w~~~l~~~~ 546 (774)
.|+.||+.-.
T Consensus 107 ~W~~AIq~vs 116 (516)
T KOG0690|consen 107 EWIEAIQAVS 116 (516)
T ss_pred HHHHHHHHHh
Confidence 9999987655
No 130
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.04 E-value=0.013 Score=63.23 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecccccceeeee
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETY 115 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~~ks~~~~~~ 115 (774)
.|+|+..|..++||. |.|+.||.|++|||+++.+.........-++.|+.|++.+.|...+....+..
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~t 197 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTIT 197 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEE
Confidence 479999999999998 57999999999999999987555555555578999999999865554444433
No 131
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.04 E-value=0.034 Score=51.55 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=57.5
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec-----c-----CCCCCc-EEEEEEeCCCCceeeEE
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS-----S-----SRHSDV-IVFSVRCGTPQGVATHH 526 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~-----~-----s~~~~~-~~f~~~~~t~~g~~~~~ 526 (774)
.+.|+..|+||.+.-|+||+..+.. +-..|...+-+-. ++| + ....|- +.|.|..... + .+.+
T Consensus 17 k~gW~r~yvVv~~~Kl~lYd~e~~~--~~~~p~~vldl~~--~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~-~-~~ll 90 (112)
T cd01242 17 KPGWKKQYVVVSSRKILFYNDEQDK--ENSTPSMILDIDK--LFHVRPVTQGDVYRADAKEIPKIFQILYANE-A-RDLL 90 (112)
T ss_pred cCCceEEEEEEeCCEEEEEecCccc--cCCCcEEEEEccc--eeeeecccHHHeeecCcccCCeEEEEEeCCc-c-ceEE
Confidence 3579999999999999999987643 1233555443322 333 1 122333 8899887532 3 7889
Q ss_pred EEecChhHHHHHHHHHHHH
Q psy4897 527 LRAETHRDLANWARTLVQA 545 (774)
Q Consensus 527 ~~~et~~dl~~w~~~l~~~ 545 (774)
+-+++..|-..|..+|+.-
T Consensus 91 lLA~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 91 LLAPQTDEQNKWVSRLVKK 109 (112)
T ss_pred EEeCCchHHHHHHHHHHHh
Confidence 9999999999999999864
No 132
>KOG3938|consensus
Probab=95.92 E-value=0.014 Score=61.40 Aligned_cols=83 Identities=30% Similarity=0.469 Sum_probs=67.9
Q ss_pred ccceEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cC
Q psy4897 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AG 249 (774)
Q Consensus 172 ~~~~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g 249 (774)
..+...+.+.|. ...||++|... ...-.||.+|.+||.-++-..+.+||.|-+|||+++.++.|.|+.++||. .+
T Consensus 124 kGq~kEv~v~Ks-edalGlTITDN--G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 124 KGQAKEVEVVKS-EDALGLTITDN--GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred cCcceeEEEEec-ccccceEEeeC--CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 345677888885 67899999642 12347999999999999877799999999999999999999999999998 55
Q ss_pred cceEEEEE
Q psy4897 250 KLVELEVK 257 (774)
Q Consensus 250 ~~V~L~V~ 257 (774)
++.+|.+.
T Consensus 201 e~ftlrLi 208 (334)
T KOG3938|consen 201 ETFTLRLI 208 (334)
T ss_pred CeeEEEee
Confidence 66666554
No 133
>KOG1738|consensus
Probab=95.91 E-value=0.02 Score=66.61 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=65.0
Q ss_pred CCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEEecccc
Q psy4897 184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263 (774)
Q Consensus 184 ~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~~ 263 (774)
...++|+.|... .+.+++|+.+.+++||+....+..||.|++||++.|.++.+..+|+.++....-|.++|+..+...
T Consensus 211 p~eglg~~I~Ss--ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~~~ 288 (638)
T KOG1738|consen 211 PSEGLGLYIDSS--YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPVTS 288 (638)
T ss_pred cccCCceEEeee--cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCCCc
Confidence 467889888754 356789999999999999999999999999999999999999999999986666666666544433
No 134
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.89 E-value=0.057 Score=49.04 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=58.2
Q ss_pred EEEEEEeccceeEEecCCCCChhcccCcccccceeeE--eeeccCCCCCcEEEEEEeCCCCce----eeEEEEecChhHH
Q psy4897 462 VSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST--RLVSSSRHSDVIVFSVRCGTPQGV----ATHHLRAETHRDL 535 (774)
Q Consensus 462 ~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~--r~~~~s~~~~~~~f~~~~~t~~g~----~~~~~~~et~~dl 535 (774)
+.+|+|||+.+||+|+.--..- |--.-||... |.|-+.-.+.++||++=.+..+-| ++.-++++|..|+
T Consensus 20 K~~WFVLt~~~L~wykd~eeKE-----~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~v 94 (110)
T cd01256 20 KDYWFVLTSESLSWYKDDEEKE-----KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEV 94 (110)
T ss_pred cceEEEEecceeeeeccccccc-----ccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHH
Confidence 7899999999999998876432 3334444443 444443345569999987665433 4667999999999
Q ss_pred HHHHHHHHHHH
Q psy4897 536 ANWARTLVQAT 546 (774)
Q Consensus 536 ~~w~~~l~~~~ 546 (774)
-.|..++.+|-
T Consensus 95 dswkasflrag 105 (110)
T cd01256 95 DSWKASFLRAG 105 (110)
T ss_pred HHHHHHHHhcc
Confidence 99999999873
No 135
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.64 E-value=0.032 Score=59.97 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeeeccc
Q psy4897 58 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGVGYG 107 (774)
Q Consensus 58 pAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R~~~ 107 (774)
.-.++| ||+||.+++|||.++.+..+ +.++++. ....++|+|.|++.
T Consensus 219 lF~~~G-Lq~GDva~sING~dL~D~~q--a~~l~~~L~~~tei~ltVeRdGq 267 (276)
T PRK09681 219 LFDASG-FKEGDIAIALNQQDFTDPRA--MIALMRQLPSMDSIQLTVLRKGA 267 (276)
T ss_pred HHHHcC-CCCCCEEEEeCCeeCCCHHH--HHHHHHHhccCCeEEEEEEECCE
Confidence 446676 99999999999999997754 3344332 34689999999874
No 136
>KOG3129|consensus
Probab=95.04 E-value=0.053 Score=55.43 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=44.7
Q ss_pred eEEEEecCCChhhhccCCCCCCEEEEECCeecCCCC-HHHHHHHHHH-cCcceEEEEEEecc
Q psy4897 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT-HDEAVKALKR-AGKLVELEVKYLRE 261 (774)
Q Consensus 202 i~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t-~~e~v~~Lk~-~g~~V~L~V~R~~~ 261 (774)
.+|+.|.|+|||+.+| |+.||.|+.+..+.-.+.. ...+-...+. .++.+.++|.|.++
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~ 201 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ 201 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence 5899999999999998 9999999999887766532 3333333333 67888888887654
No 137
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.01 E-value=0.051 Score=58.49 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=40.0
Q ss_pred hhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccccc
Q psy4897 214 DQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREVTP 264 (774)
Q Consensus 214 ~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~~~ 264 (774)
.++| |++||.+++|||.++.+ .+++.+++++ ....++|+|.|+++...
T Consensus 221 ~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~~~ 270 (276)
T PRK09681 221 DASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGARHD 270 (276)
T ss_pred HHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence 4466 99999999999999988 7777777776 55789999999887543
No 138
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.07 Score=59.24 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=52.0
Q ss_pred CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEecc
Q psy4897 199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLRE 261 (774)
Q Consensus 199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~ 261 (774)
..|++|..|.+++||+++| ++.||.|+++||+++.+ ..+....+.. .+..+.+.+.|.++
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECCE
Confidence 4569999999999999998 99999999999999988 7787777765 57889999988743
No 139
>KOG0606|consensus
Probab=94.73 E-value=0.072 Score=65.70 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=64.2
Q ss_pred EEEeccCCCCcceEEe------CCCC-CCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCc
Q psy4897 178 IRVKKSENNGLGISIK------GGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 250 (774)
Q Consensus 178 V~L~k~~~~~LGfsi~------gg~~-~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~ 250 (774)
+.+.. ...+|||.+. |+.+ ..+-..|..|.+++||..+| |+.||.|..|||.+|.+..|.+++++|-+.+.
T Consensus 630 I~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 630 ITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred eeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 44444 3678887764 2222 12457899999999999997 99999999999999999999999999999999
Q ss_pred ceEEEEEE
Q psy4897 251 LVELEVKY 258 (774)
Q Consensus 251 ~V~L~V~R 258 (774)
.|.+.+..
T Consensus 708 ~v~~~ttp 715 (1205)
T KOG0606|consen 708 KVTLRTTP 715 (1205)
T ss_pred eeEEEeec
Confidence 98887754
No 140
>KOG3532|consensus
Probab=94.73 E-value=0.084 Score=61.72 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=58.0
Q ss_pred EEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897 26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV 104 (774)
Q Consensus 26 l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R 104 (774)
+.+..+..+|+...- .....+-|..|.+++||.++. |++||++++|||++|+. ..++...++.....|...+.|
T Consensus 380 ~~~~~s~~ig~vf~~--~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 380 SRYDVSSPIGLVFDK--NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ccccccCceeEEEec--CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence 345566777776652 234568899999999999996 99999999999999984 577888888876667666655
No 141
>KOG1421|consensus
Probab=94.72 E-value=0.067 Score=62.71 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=51.0
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcceEEEEEEeccc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKLVELEVKYLREV 262 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~V~L~V~R~~~~ 262 (774)
.-++|..|.++++|++. |++||.+++||+..+.+ ..++-++|-+ .|+.+.|+|.|.++.
T Consensus 303 gmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred eeEEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCEE
Confidence 34689999999999985 99999999999998877 7777788866 889999999998763
No 142
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.70 E-value=0.2 Score=47.25 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=53.1
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccce--------eeEeeecc-----CCCCCc-EEEEEEe----CCC
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPL--------VSTRLVSS-----SRHSDV-IVFSVRC----GTP 519 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l--------~~~r~~~~-----s~~~~~-~~f~~~~----~t~ 519 (774)
.+.|+++|++|.+.-|+||+..+... ..|.....+ +..|=|.+ ....|. +.|.|.+ +..
T Consensus 17 krGW~r~~vVv~~~Kl~lYd~e~~k~---~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~ 93 (122)
T cd01243 17 KKGWQRALVVVCDFKLFLYDIAEDRA---SQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASS 93 (122)
T ss_pred ccCceEEEEEEeCCEEEEEeCCcccc---CCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCC
Confidence 45799999999999999999888431 123333222 12221111 122333 7787765 222
Q ss_pred CceeeEEEEecChhHHHHHHHHHH
Q psy4897 520 QGVATHHLRAETHRDLANWARTLV 543 (774)
Q Consensus 520 ~g~~~~~~~~et~~dl~~w~~~l~ 543 (774)
. ..+-||-+++..|...|..+|-
T Consensus 94 ~-~~~~~~lA~s~~eK~kWV~aL~ 116 (122)
T cd01243 94 S-KCSTLMLADTEEEKSKWVGALS 116 (122)
T ss_pred C-ccEEEEEeCCchHHHHHHHHHH
Confidence 2 2578899999999999999874
No 143
>KOG3532|consensus
Probab=94.69 E-value=0.093 Score=61.37 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=56.5
Q ss_pred ccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcCcceEEEEEE
Q psy4897 182 KSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY 258 (774)
Q Consensus 182 k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g~~V~L~V~R 258 (774)
+..+..+|+.+... ....+.|..|.++++|.++. +++||++++|||++|.. ..++.+.++.....+..++.|
T Consensus 382 ~~~s~~ig~vf~~~--~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDKN--TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ccccCceeEEEecC--CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence 34466777766532 24567899999999999996 99999999999999987 889999999865555555544
No 144
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.69 E-value=0.069 Score=49.12 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=40.8
Q ss_pred CcccceeeEeeecccc-cC--CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897 302 RYLPLQLCYLVRNYKH-YD--SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357 (774)
Q Consensus 302 ~~ipl~~~~l~R~~~~-~d--~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni 357 (774)
+.|++.-|.-.+.... .+ .++++|+|..++ ++++|.|+|.+++.+||++|+.++
T Consensus 45 g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~--rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 45 CSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD--KTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred ceEEcccceEEeeccccccccccCcEEEEEcCC--ceEEEEeCCHHHHHHHHHHHHhhC
Confidence 4566666666663221 11 246899998877 689999999999999999999875
No 145
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.37 E-value=0.099 Score=56.69 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=51.4
Q ss_pred CCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcceEEEEEEeccc
Q psy4897 200 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLVELEVKYLREV 262 (774)
Q Consensus 200 ~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V~L~V~R~~~~ 262 (774)
.|+++..|..++++. |.|+.||.|++|||+++.+ .+|+...++. .|+.|++..+|..+.
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~ 190 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNET 190 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCC
Confidence 468999999999995 5699999999999999988 8999999986 899999999975443
No 146
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.20 E-value=0.19 Score=46.77 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCCCceEEEEEEeccceeEEecCCCCChhcc-------cCcccccceeeEeeeccCCCCCcEEEEEEeCCCCce---eeE
Q psy4897 456 DSTDRWVSIFGAVTERELRLYESAPWSPEAW-------STPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGV---ATH 525 (774)
Q Consensus 456 ~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~-------~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~---~~~ 525 (774)
++.+.|+++|++|+..-||.+.-- -+++.+ ......|..++-|-.+.+|. .+||++++..-|.. .-.
T Consensus 11 ~gkKsWKk~~f~LR~SGLYy~~Kg-ksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPT--d~~F~~K~~~~q~~~s~~ik 87 (114)
T cd01259 11 DGKKSWKKYYFVLRSSGLYYFPKE-KTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPT--DYCFGFKAVGDQSKGSQSIK 87 (114)
T ss_pred CCCccceEEEEEEeCCeeEEccCC-CcCCHHHHHHHHhcccCcEEEEechhhccCCCC--CceEEEeccccCcccchhhe
Confidence 478999999999999999876543 344433 12223333333232222221 29999998866554 256
Q ss_pred EEEecChhHHHHHHHHHHHH
Q psy4897 526 HLRAETHRDLANWARTLVQA 545 (774)
Q Consensus 526 ~~~~et~~dl~~w~~~l~~~ 545 (774)
+|++|+.+.+..|..+|--+
T Consensus 88 ~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 88 YLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred eeccCCHHHHHHHHHHHHHH
Confidence 89999999999999877443
No 147
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=94.07 E-value=0.051 Score=62.38 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=48.4
Q ss_pred CCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCe--ecCCCCHHHHHHHHHHcCcceEEEEEEeccc
Q psy4897 185 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE--DLREATHDEAVKALKRAGKLVELEVKYLREV 262 (774)
Q Consensus 185 ~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~--~V~~~t~~e~v~~Lk~~g~~V~L~V~R~~~~ 262 (774)
...||+.+... ....+|..|.++|||..+| |.+||.|++|||. ...+. +.+..+.+.+.+.+..
T Consensus 450 ~~~LGl~v~~~---~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~~----------~~~d~i~v~~~~~~~L 515 (558)
T COG3975 450 AYYLGLKVKSE---GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRY----------KVNDKIQVHVFREGRL 515 (558)
T ss_pred CcccceEeccc---CCeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccccc----------ccccceEEEEccCCce
Confidence 34677776542 4567999999999999998 9999999999999 22221 2456677777665555
Q ss_pred ccc
Q psy4897 263 TPY 265 (774)
Q Consensus 263 ~~~ 265 (774)
..+
T Consensus 516 ~e~ 518 (558)
T COG3975 516 REF 518 (558)
T ss_pred EEe
Confidence 444
No 148
>KOG1320|consensus
Probab=93.82 E-value=0.096 Score=60.15 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=45.4
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC--ceEEEEeeec
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG--KVVELEVGVG 105 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag--~~V~L~V~R~ 105 (774)
++++|++|.|++++...+ +++||+|++|||++|.++.|. ..++..+- +.|.+...|.
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~l--~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKHL--YELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHHH--HHHHHhcCcCceEEEEEecC
Confidence 469999999999999876 999999999999999999664 45565553 4666555544
No 149
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.56 E-value=0.36 Score=50.49 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=54.0
Q ss_pred eEEEEEeccCCCCcceEEeCCCCCCCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH--cCcce
Q psy4897 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKLV 252 (774)
Q Consensus 175 ~r~V~L~k~~~~~LGfsi~gg~~~~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~--~g~~V 252 (774)
.+...+.+ ..+-+|+.+..|++ ++.-+..| |+.||..++||+.++.+ .+++.++++. .-..+
T Consensus 195 Irltpv~r-~eki~Gyr~~pgkd------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~ 258 (275)
T COG3031 195 IRLTPVIR-NEKIEGYRFEPGKD------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSL 258 (275)
T ss_pred eEeeeEee-CCceEEEEecCCCC------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcce
Confidence 45555544 35667888776643 44555666 99999999999999988 8899888887 45678
Q ss_pred EEEEEEeccc
Q psy4897 253 ELEVKYLREV 262 (774)
Q Consensus 253 ~L~V~R~~~~ 262 (774)
.|+|.|++..
T Consensus 259 qlTv~R~G~r 268 (275)
T COG3031 259 QLTVIRRGKR 268 (275)
T ss_pred EEEEEecCcc
Confidence 8999987653
No 150
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.82 E-value=0.24 Score=45.78 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=35.7
Q ss_pred ecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHH
Q psy4897 313 RNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLH 354 (774)
Q Consensus 313 R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~ 354 (774)
|.......|++||+|.+++...++.|++.+..+...||+||.
T Consensus 61 ~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 61 RRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred ccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 333444558889999999998889999999999999999985
No 151
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=91.50 E-value=0.58 Score=49.02 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=48.5
Q ss_pred EeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--cCceEEEEeee
Q psy4897 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR--AGKVVELEVGV 104 (774)
Q Consensus 27 ~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~--ag~~V~L~V~R 104 (774)
.++.++-+|+.+..|+ +++.-++.| ||.||..++||+.++++- +++.++++. .-..+.|+|.|
T Consensus 200 v~r~eki~Gyr~~pgk------------d~slF~~sg-lq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R 264 (275)
T COG3031 200 VIRNEKIEGYRFEPGK------------DGSLFYKSG-LQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIR 264 (275)
T ss_pred EeeCCceEEEEecCCC------------Ccchhhhhc-CCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEe
Confidence 4566777777777664 456667777 999999999999999865 444444443 34678999999
Q ss_pred cccc
Q psy4897 105 GYGR 108 (774)
Q Consensus 105 ~~~k 108 (774)
++.+
T Consensus 265 ~G~r 268 (275)
T COG3031 265 RGKR 268 (275)
T ss_pred cCcc
Confidence 8744
No 152
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.13 E-value=0.72 Score=43.29 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccC-----CCCCc-EEEEEEeCCCCceeeEEEEec
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSS-----RHSDV-IVFSVRCGTPQGVATHHLRAE 530 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s-----~~~~~-~~f~~~~~t~~g~~~~~~~~e 530 (774)
....||++|..|-.++|-+|.+ +..+++...-||-+..-|.++ +.... |||.|||.+- -||--+
T Consensus 12 ~d~~rKRhYWrLDsK~Itlf~~-----e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~-----vY~VG~ 81 (117)
T cd01239 12 SDNRRKKHYWRLDSKAITLYQE-----ESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTN-----VYFVGG 81 (117)
T ss_pred CccceeeeEEEecCCeEEEEEc-----CCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCE-----EEEecc
Confidence 4578999999999999999998 557888888888876544432 11222 9999999742 333322
Q ss_pred C--------------------hhHH-HHHHHHHHHH
Q psy4897 531 T--------------------HRDL-ANWARTLVQA 545 (774)
Q Consensus 531 t--------------------~~dl-~~w~~~l~~~ 545 (774)
. ..|+ .+|+.+|.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 82 EDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred cccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1 3455 6799999875
No 153
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=90.97 E-value=0.38 Score=44.13 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=32.3
Q ss_pred CceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897 322 NRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHV 359 (774)
Q Consensus 322 ~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~ 359 (774)
.++|.|..+ .++.+|.|++.+++.+|++||+.+|..
T Consensus 67 ~~~F~i~t~--~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 67 WYGVTLVTP--ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred cceEEEEeC--CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 359999987 678999999999999999999999875
No 154
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=88.70 E-value=3.3 Score=38.40 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCCCCc-EEEEEEeCCCCceeeEEEEecChhHHHHHHHHH
Q psy4897 504 SRHSDV-IVFSVRCGTPQGVATHHLRAETHRDLANWARTL 542 (774)
Q Consensus 504 s~~~~~-~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l 542 (774)
++..|+ +||.|.+.++.+ ++.|-+|+..|+..|..|+
T Consensus 64 ~~~~dRRFCFei~~~~~~~--~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 64 TESIDKRFCFDVEVEEKPG--VITMQALSEKDRRLWIEAM 101 (104)
T ss_pred cCCccceeeEeeeecCCCC--eEEEEecCHHHHHHHHHhh
Confidence 344454 999999988764 5899999999999999886
No 155
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=88.64 E-value=3.2 Score=38.44 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=57.0
Q ss_pred eEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCC-cEEEEEEeCCCCceeeEEEEecChhHHHHHH
Q psy4897 461 WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSD-VIVFSVRCGTPQGVATHHLRAETHRDLANWA 539 (774)
Q Consensus 461 w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~-~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~ 539 (774)
-+++++.|= .|+++|.+.-.. --..+..+.+||....|+...+..+ .++|.|.+.. +++.+.++|..|...|.
T Consensus 18 ~~~R~ffLF-nD~LvY~~~~~~-~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~----kSf~v~A~s~~eK~eWl 91 (104)
T cd01218 18 PKQRQFFLF-NDILVYGNIVIS-KKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPT----KSFAVYAATETEKREWM 91 (104)
T ss_pred CceEEEEEe-cCEEEEEEeecC-CceeeEeeEEEccceEEEecCCcccccceEEEecCC----eEEEEEcCCHHHHHHHH
Confidence 345555554 348889654111 1234445667777766654333222 3899999874 69999999999999999
Q ss_pred HHHHHHHHHHH
Q psy4897 540 RTLVQATHSCV 550 (774)
Q Consensus 540 ~~l~~~~~~~~ 550 (774)
.+|..|+....
T Consensus 92 ~~i~~ai~~~l 102 (104)
T cd01218 92 LHINKCVTDLL 102 (104)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 156
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=88.35 E-value=1.1 Score=41.03 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=40.0
Q ss_pred CcCcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 300 DTRYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 300 ~~~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
..+.||+........+.. .-.+.++|.|..++ ++++|+|++..+..+|+.||..
T Consensus 43 ~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~--r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 43 KSALIKLAAIKGTEPLSDKSFVNVDIITIVCED--DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred eeeeEEccceEEEEEcCCcccCCCceEEEEeCC--CeEEEECCCHHHHHHHHHHHhc
Confidence 346677776665554332 22256899998876 4799999999999999999864
No 157
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.97 E-value=1.2 Score=41.14 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=38.8
Q ss_pred CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
+.|.+.-|...........+.++|+|..++ ++++|.|++.+++.+|+++|..
T Consensus 51 G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~--R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 51 GTIDMNQCTDVVDAEARTGQKFSICILTPD--KEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred eEEEccceEEEeecccccCCccEEEEECCC--ceEEEEeCCHHHHHHHHHHHHh
Confidence 556666676665322222246899999886 6799999999999999999864
No 158
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.85 E-value=1.5 Score=41.42 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=41.0
Q ss_pred cCcccceeeEeeecccccCCCCceEEEecCCC-------------------ceeEEEeeCChHhHHHHHHHHHHHhhh
Q psy4897 301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDG-------------------VHSCILRASDASEASLWFNTLHSTLHV 359 (774)
Q Consensus 301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg-------------------~~~~~Lr~~d~~~~~~W~~Ai~~ni~~ 359 (774)
.+.+++.-+.+.+- ....++++|+|..+++ .+..++.|++.+++.+|++||..++..
T Consensus 40 ~g~I~L~~~~v~~~--~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 40 RGIIPLENVSIREV--EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred eEEEECCCcEEEEc--ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 34566665554441 1124778999988776 145669999999999999999998863
No 159
>PF12812 PDZ_1: PDZ-like domain
Probab=87.68 E-value=1.6 Score=38.36 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=38.4
Q ss_pred CeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHHcC
Q psy4897 201 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG 249 (774)
Q Consensus 201 pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~~g 249 (774)
++++.....|+++...+ +..|-.|.+|||+++.+ .+++++.+++.+
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhCC
Confidence 45666778888888654 99999999999999988 789999888743
No 160
>KOG0790|consensus
Probab=87.47 E-value=0.034 Score=62.24 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=55.1
Q ss_pred ccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh----hHHHHHHHhhhcCC--CCCCCceEEEEc
Q psy4897 315 YKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL----TLKSIAEANKILGP--ALLGDLQLIGWL 386 (774)
Q Consensus 315 ~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l----~~~~~~~~n~~l~~--~~~~~~~~mGWl 386 (774)
.+.+..+|||.+|.|.|.++..++--+.....++||||.++.++.- +.+.-+.|++.++- +|+.+||.|.|-
T Consensus 269 r~eN~~KNRYkNIlPfDHtRViL~d~~~n~pgsdYINAnyi~~~~q~~~~~~~~kKsyIAtQGCL~nTVnDFW~MvwQ 346 (600)
T KOG0790|consen 269 RPENKGKNRYKNILPFDHTRVILQDRDPNIPGSDYINANYIMIEFQRLCNNSKPKKSYIATQGCLQNTVNDFWRMVWQ 346 (600)
T ss_pred cchhhccccccccCcccceeeEeecCCCCCccchhcccchhhhhhhhccCccccccceeehhhHHHHHHHHHHHHHHh
Confidence 4567779999999999999766666667788899999998866622 22233456666666 788899999996
No 161
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.27 E-value=1.6 Score=39.92 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=34.9
Q ss_pred CcccceeeEeeecccc-cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 302 RYLPLQLCYLVRNYKH-YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 302 ~~ipl~~~~l~R~~~~-~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
+.+++..+. .+.... .-.+++||+|..+......++.+++ ++..+|+++|..
T Consensus 45 gli~l~~~~-V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 45 GLIDLSDAY-LYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ceeeccccE-EEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 345555553 331111 1247799999988774466777777 999999999864
No 162
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=86.78 E-value=1.5 Score=39.30 Aligned_cols=50 Identities=12% Similarity=0.304 Sum_probs=39.4
Q ss_pred cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
.+.|++..|.+... +.+...|+|...++ ++..|+|++.++...|++||+.
T Consensus 41 ~G~I~L~~~~i~~~----~~~~~~F~i~~~~~-r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 41 RGSIFLKKAIIAAH----EFDENRFDISVNEN-VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred cEEEECcccEEEcC----CCCCCEEEEEeCCC-eEEEEEeCCHHHHHHHHHHHhh
Confidence 46778887766652 34567999986554 7999999999999999999974
No 163
>KOG4371|consensus
Probab=86.52 E-value=0.73 Score=56.63 Aligned_cols=88 Identities=25% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCCcEEEEEEeecCCcccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCc
Q psy4897 17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK 96 (774)
Q Consensus 17 ~s~~~~~V~l~rk~~~gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~ 96 (774)
.+..++.|.+.+++-.++|+++..- ....|++|..+...+.|...|.+++||+++..+|+++.+.+-.....-++-.-+
T Consensus 1242 ~~~~l~~~~~~~~p~~~~~~~~~~~-~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~ 1320 (1332)
T KOG4371|consen 1242 ASAPLISVMLLKKPMATLGLSLAKR-TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQG 1320 (1332)
T ss_pred ccchhhhheeeeccccccccccccc-CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccC
Confidence 3467788999999999999998743 335689999999999999999999999999999999999988776666666566
Q ss_pred eEEEEeeec
Q psy4897 97 VVELEVGVG 105 (774)
Q Consensus 97 ~V~L~V~R~ 105 (774)
.|.+++.|.
T Consensus 1321 p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1321 PVQITVTRE 1329 (1332)
T ss_pred chhheehhh
Confidence 667776553
No 164
>KOG3834|consensus
Probab=86.47 E-value=2.8 Score=47.40 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=59.4
Q ss_pred cccccCCCCcEEEEEEeecCCc---ccEEEEccCCC---CCCeEEEEecCCCHHhhhCCCC-CCCEEEEE-CCEecCCCC
Q psy4897 12 EAFFFSSRDFYSENYKYTENNG---LGISIKGGKEN---KMPILISKIFKGMAADQTEQLY-VGDAILSV-NGEDLREAT 83 (774)
Q Consensus 12 ~~~~~~s~~~~~V~l~rk~~~g---LGfsI~GG~e~---~~gi~Vs~V~pGSpAaraG~Lq-vGD~ILsV-NG~~V~~~s 83 (774)
+.|-.+...++.|.|....+-+ ||++|+=-... ..-.-|-+|.+++||+.+| |+ .+|-|+-+ |.+--+ .
T Consensus 69 tv~n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~~--~ 145 (462)
T KOG3834|consen 69 TVYNSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMHE--E 145 (462)
T ss_pred EEEecccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhccc--h
Confidence 4555667788889998888888 99999843321 1234566899999999998 66 88999888 543322 1
Q ss_pred HHHHHHHHHhcCceEEEEee
Q psy4897 84 HDEAVKALKRAGKVVELEVG 103 (774)
Q Consensus 84 h~eaV~lLk~ag~~V~L~V~ 103 (774)
.+....+..+-++.+.|.|.
T Consensus 146 eDl~~lIeshe~kpLklyVY 165 (462)
T KOG3834|consen 146 EDLFTLIESHEGKPLKLYVY 165 (462)
T ss_pred HHHHHHHHhccCCCcceeEe
Confidence 22222333344667777774
No 165
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=85.87 E-value=1.5 Score=39.28 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
..+.++|.|..++. ++++++|++.+++.+|++||..+
T Consensus 60 ~~k~~~F~I~~~~~-~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 60 VKKKYAFKVCHPVY-KSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred cCCceEEEECCCCC-cEEEEEeCCHHHHHHHHHHHHhC
Confidence 34788999986653 57999999999999999999753
No 166
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=85.77 E-value=2.3 Score=36.97 Aligned_cols=38 Identities=18% Similarity=0.551 Sum_probs=34.1
Q ss_pred CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897 319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357 (774)
Q Consensus 319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni 357 (774)
...+++|.|...++ .++++.|++.++..+|++||+.++
T Consensus 66 ~~~~~~f~i~~~~~-~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 66 KKRKNCFEITTPNG-KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSSSSEEEEEETTS-EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 45788999999988 589999999999999999999876
No 167
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.66 E-value=0.054 Score=57.35 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=51.5
Q ss_pred ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEccee
Q psy4897 317 HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLARK 389 (774)
Q Consensus 317 ~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~~~ 389 (774)
.++.||||=+|-|+++++...-+. ....|||||.+.-+.. .+ |+++++| .+.++||+|.|.+--
T Consensus 52 ~~~~rNRYsnIvPYe~tRV~Lk~~---k~~~DYINAS~ik~~~-~~-----yIAtQgP~~~t~ddFW~mvw~n~~ 117 (302)
T COG5599 52 TNYARNRYSNIVPYEHTRVHLKYG---KSINDYINASYIKTPR-GK-----YIATQGPKPETIDDFWKMVWHNVP 117 (302)
T ss_pred cccccccccccccccCceeeccCC---CchhhcccceeeecCC-Cc-----eEEecCCCCchHHHHHHHHHhcCC
Confidence 456789999999999997555444 4678999999887776 22 8899999 788899999999754
No 168
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=85.57 E-value=2.2 Score=49.35 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=51.7
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEe---eec-cCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTR---LVS-SSRHSDVIVFSVRCGTPQGVATHHLRAETHR 533 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r---~~~-~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~ 533 (774)
..+|+.+|+.+++..+.+..+-+-+. ....|.. -++..+. .|. .......++|.+.+- +++..||.+++..
T Consensus 389 ~~~wk~ry~~l~~~~l~~~~~~~~~~-~~~~~~~-~~l~~~~~v~pv~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~ 463 (478)
T PTZ00267 389 DMRWKKRYFYIGNGQLRISLSENPEN-DGVAPKS-VNLETVNDVFPVPEVYSQKHPNQLVLWFN---NGQKIIAYAKTAE 463 (478)
T ss_pred CcchhhheEEecCCceEEEecccccc-CCCCCcc-ccHHHhcccccccHHhcCCCCceEEEEec---CCcEEEEecCChH
Confidence 34699999999988888865533221 1121111 1121111 110 012234588988654 3367889999999
Q ss_pred HHHHHHHHHHHHH
Q psy4897 534 DLANWARTLVQAT 546 (774)
Q Consensus 534 dl~~w~~~l~~~~ 546 (774)
++..|.++|+.++
T Consensus 464 ~~~~W~~~~~~~~ 476 (478)
T PTZ00267 464 DRDQWISKFQRAC 476 (478)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
No 169
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.32 E-value=2.1 Score=38.66 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=37.2
Q ss_pred cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
.+.|++..+.+... .+.+.+.|+|..+ .+++.++|++.+++..|++||+..
T Consensus 43 ~G~I~L~~~~~~~~---~~~~~~~F~i~t~--~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 43 LGRVDLSGAAFTYD---PREEKGRFEIHSN--NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cceEECCccEEEcC---CCCCCCEEEEEcC--CcEEEEECCCHHHHHHHHHHHHhh
Confidence 35566655544431 2224679999875 467999999999999999999865
No 170
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=84.20 E-value=2.5 Score=38.67 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=39.3
Q ss_pred CcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 302 ~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
+.+|+..+.+.. .......+++|.|.++ ..++.+.|.+.++..+|+.+|+.+|.
T Consensus 45 ~~i~L~~~~V~~-~~~~~~~~~~F~I~~~--~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 45 GHLPLRGMLTEE-SEHEWGVPHCFTIFGG--QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEcCceEEee-ccCCcCCceeEEEEcC--CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 445565554432 1111235689999965 46799999999999999999999986
No 171
>PF12812 PDZ_1: PDZ-like domain
Probab=84.19 E-value=2.3 Score=37.30 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=36.3
Q ss_pred CeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcC
Q psy4897 47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG 95 (774)
Q Consensus 47 gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag 95 (774)
+.++.....|+++.+- ++..|-.|.+|||+++.++ ++.++.+++..
T Consensus 31 ~gv~v~~~~g~~~~~~-~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAG-GISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhC-CCCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 4556667889998874 4999999999999999977 56666676654
No 172
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=83.96 E-value=1.9 Score=39.27 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
++++|+|..+ .++.+++|++.+++.+|+.||...|.
T Consensus 64 ~~~~F~I~t~--~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 64 GPNTFAVCTK--HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CCcEEEEECC--CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 5689999765 56799999999999999999987664
No 173
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.86 E-value=2.7 Score=39.74 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhh
Q psy4897 319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVL 360 (774)
Q Consensus 319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l 360 (774)
.++.+.|-|..+++. ..+++|.+.+++..|+++|+.++...
T Consensus 74 ~Kr~~VF~L~~~~g~-~~lfqA~~~ee~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 74 SKKPHVFRLRTADWR-EFLFQTSSLKELQSWIERINVVAAAF 114 (117)
T ss_pred cCCCcEEEEEcCCCC-EEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 458889999999998 68899999999999999999887643
No 174
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=82.60 E-value=2.7 Score=38.33 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=33.4
Q ss_pred CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
..+++|.|.+.+ +++++.|++.++...|++||..+|.
T Consensus 64 ~~~~~F~I~~~~--rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 64 ERPHSFLVSGKQ--RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CcCceEEEecCC--cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 367899998887 7999999999999999999999875
No 175
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.15 E-value=2.7 Score=36.51 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
++++|.|..+++ ..+++++++.+++..|++||..+
T Consensus 57 ~~~~F~i~~~~~-~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 57 DDKCFTIDTGGD-KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCcEEEEEcCCC-CEEEEECCCHHHHHHHHHHHHhC
Confidence 478999998766 58999999999999999999753
No 176
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=81.38 E-value=3.3 Score=38.10 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=38.9
Q ss_pred cCcccceeeEeeecccccCC-CCceEEEecCCCceeEEEeeCChHhHHHHHHHHH
Q psy4897 301 TRYLPLQLCYLVRNYKHYDS-ENRTLELHSPDGVHSCILRASDASEASLWFNTLH 354 (774)
Q Consensus 301 ~~~ipl~~~~l~R~~~~~d~-r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~ 354 (774)
.+.|++.-|.-... ..|. ++++|+|..+| +++.|.|++.+++..|++||.
T Consensus 49 ~~vI~L~~c~~v~~--~~d~k~~~~f~i~t~d--r~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 49 KRVIPLESCFNINK--RADAKHRHLIALYTRD--EYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred eEEEEccceEEEee--ccccccCeEEEEEeCC--ceEEEEeCCHHHHHHHHHHHh
Confidence 45777777765542 2234 46899999977 589999999999999999985
No 177
>KOG0792|consensus
Probab=80.60 E-value=0.69 Score=57.14 Aligned_cols=67 Identities=28% Similarity=0.553 Sum_probs=58.7
Q ss_pred cCCcccEEEEccCCCC-----CCeEEEEec-------------CCCHHhhhC-CCCCCCEEEEECCEecCCCCHHHHHHH
Q psy4897 30 ENNGLGISIKGGKENK-----MPILISKIF-------------KGMAADQTE-QLYVGDAILSVNGEDLREATHDEAVKA 90 (774)
Q Consensus 30 ~~~gLGfsI~GG~e~~-----~gi~Vs~V~-------------pGSpAaraG-~LqvGD~ILsVNG~~V~~~sh~eaV~l 90 (774)
+.+.+||-++||.+.. .+..++.|. |+++|+... ++..||+++.|||.++....|+..|..
T Consensus 714 ~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ 793 (1144)
T KOG0792|consen 714 PPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSL 793 (1144)
T ss_pred CCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHH
Confidence 3789999999999875 788899999 999987643 388999999999999999999999999
Q ss_pred HHhcCc
Q psy4897 91 LKRAGK 96 (774)
Q Consensus 91 Lk~ag~ 96 (774)
++++..
T Consensus 794 irs~r~ 799 (1144)
T KOG0792|consen 794 IRSPRE 799 (1144)
T ss_pred Hhhhhh
Confidence 998654
No 178
>KOG4407|consensus
Probab=80.39 E-value=0.77 Score=57.50 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=52.7
Q ss_pred CCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeee
Q psy4897 46 MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGV 104 (774)
Q Consensus 46 ~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R 104 (774)
.-+||..|.+++||.-+. ||.||+++.||..++.+..+.+++.++++....+++.|..
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P 200 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP 200 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence 358999999999999986 9999999999999999999999999999987777777753
No 179
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=80.23 E-value=3.3 Score=46.18 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=39.2
Q ss_pred EEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCce---EEEEeee
Q psy4897 49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKV---VELEVGV 104 (774)
Q Consensus 49 ~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~---V~L~V~R 104 (774)
++..+.++++|+.+| +++||+|+++|+.++.++..-...... ..+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVA-AAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHh-ccCCcccceEEEEEe
Confidence 444799999999998 999999999999999988443222222 23333 5666665
No 180
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=79.98 E-value=3.6 Score=38.75 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=30.2
Q ss_pred CCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 319 DSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 319 d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
.+|.+.|.|...||. ..++++.|.+++.+||.+|...
T Consensus 81 ~Kr~~VFrL~~~dg~-e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 81 TKRKNVFRLRTADGS-EYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp TTCSSEEEEE-TTS--EEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCC-EEEEECCCHHHHHHHHHHHhhh
Confidence 448999999999987 7899999999999999999754
No 181
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=79.44 E-value=3.9 Score=37.67 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=28.4
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
+.++|.|..++ +++++.|++.++..+|++||..
T Consensus 73 ~~~~F~i~t~~--r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 73 FKYPFQVVHDE--GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCccEEEEeCC--CeEEEEcCCHHHHHHHHHHHHh
Confidence 46799999864 4688999999999999999864
No 182
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.63 E-value=3.4 Score=36.05 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
+.++|.|..++ ..+++++++.+++..|+.||..
T Consensus 61 ~~~~f~i~~~~--~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 61 RRFCFEVISPT--KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CceEEEEEcCC--cEEEEECCCHHHHHHHHHHHhc
Confidence 67899999877 6799999999999999999964
No 183
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=75.70 E-value=4.3 Score=36.76 Aligned_cols=35 Identities=31% Similarity=0.620 Sum_probs=30.0
Q ss_pred CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
.+.+.|.|..+++. .+++++++.+++..|++||..
T Consensus 69 k~~~~F~l~~~~~~-~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 69 KKKHVFRLRLPDGA-EFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred cCceEEEEEecCCC-EEEEECCCHHHHHHHHHHHhc
Confidence 46689999877664 789999999999999999964
No 184
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=75.30 E-value=6.1 Score=33.52 Aligned_cols=37 Identities=22% Similarity=0.492 Sum_probs=32.0
Q ss_pred CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897 320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357 (774)
Q Consensus 320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni 357 (774)
...++|.|...++ ..++++|++.+++..|+++|...+
T Consensus 65 ~~~~~f~l~~~~~-~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 65 KKPHCFEIKTADR-RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CCceEEEEEecCC-ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4678999998777 479999999999999999998765
No 185
>KOG0932|consensus
Probab=75.19 E-value=1.3 Score=51.45 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=56.5
Q ss_pred CCCceEEEEEEeccceeEEecC--CCCC---hhcccCcccccceeeEeeeccCCCCCc--EEEEEEeCCCCceeeEEEEe
Q psy4897 457 STDRWVSIFGAVTERELRLYES--APWS---PEAWSTPAHVFPLVSTRLVSSSRHSDV--IVFSVRCGTPQGVATHHLRA 529 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~--~p~~---~~~~~~~~~~~~l~~~r~~~~s~~~~~--~~f~~~~~t~~g~~~~~~~~ 529 (774)
+...|+..|.+|||--|||-.. +|-. -.+.-.++..+--++|| ...+.+ ++|.+|+..- +.+.|-+
T Consensus 528 GkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~----AtdY~KKp~Vf~lrtAdw---rv~LFQa 600 (774)
T KOG0932|consen 528 GKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATP----ATDYSKKPHVFKLRTADW---RVFLFQA 600 (774)
T ss_pred cchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCC----CcccccCCceEEEEeccc---eeEEEeC
Confidence 4678999999999999999542 2211 11122333333223332 222222 9999999865 7899999
Q ss_pred cChhHHHHHHHHH--HHHHHH
Q psy4897 530 ETHRDLANWARTL--VQATHS 548 (774)
Q Consensus 530 et~~dl~~w~~~l--~~~~~~ 548 (774)
-+..+|..|...| |.|+|.
T Consensus 601 ps~eEmqsWi~rIN~vAA~fS 621 (774)
T KOG0932|consen 601 PSQEEMQSWIERINLVAAAFS 621 (774)
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 9999999998865 566664
No 186
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=73.21 E-value=21 Score=34.45 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=51.7
Q ss_pred EEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCC-cEEEEEEeCCCCceeeEEEEecCh
Q psy4897 462 VSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSD-VIVFSVRCGTPQGVATHHLRAETH 532 (774)
Q Consensus 462 ~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~-~~~f~~~~~t~~g~~~~~~~~et~ 532 (774)
+-.|++|.+..|.|-+--- ....++||++..|+-.--...+ .++|..+....+....|.||.++.
T Consensus 53 k~~~m~L~~g~lkLiDP~~------~s~LhSqPI~~IRvwGvGrdngrdFA~vard~~T~~~~CHVFRC~~p 118 (138)
T cd01272 53 KDLFMDLDEGALKLIDPEN------LTVLHSQPIHTIRVWGVGRDNGRDFAYVIRDERTRGSNCHVFRCDTR 118 (138)
T ss_pred ceeEEEecCCceEeeCCCC------CceEEeeeeeEEEEEEecCCCCcceEEEeecCCCceeEEEEEEcCCC
Confidence 6899999999999998554 4578999999999643212222 299999998888999999999887
No 187
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=71.89 E-value=20 Score=33.07 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCCCceEEEEEEecc----ceeEEecCCCCChhcccCcccccc---eeeEeeeccCCCCCc-EEEEEEeCCCCceeeEEE
Q psy4897 456 DSTDRWVSIFGAVTE----RELRLYESAPWSPEAWSTPAHVFP---LVSTRLVSSSRHSDV-IVFSVRCGTPQGVATHHL 527 (774)
Q Consensus 456 ~~~~~w~~~~~~l~~----~~l~~y~~~p~~~~~~~~~~~~~~---l~~~r~~~~s~~~~~-~~f~~~~~t~~g~~~~~~ 527 (774)
++.++|++.=++|.. ..|.||-..|.. -++|-..-+ +.+.|=-..-+-.|+ ++|.+....+ .-++|
T Consensus 16 ~~~~~WqkcRl~L~~~~gg~~le~~~~~pPK---ssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~---~eyI~ 89 (107)
T cd01231 16 DSGARWQRGRLVLRKAVGGYMLEFYLPLPPK---SSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDN---TDIIF 89 (107)
T ss_pred CCccccceeeEEEEecCCCceEEEEccCCCC---CCCCccccchhhhhhhhhcccccccCcccEEEEEecCC---ceEEE
Confidence 478899988887763 445555542322 233433332 222230000122334 8999988633 46999
Q ss_pred EecChhHHHHHHHHHHH
Q psy4897 528 RAETHRDLANWARTLVQ 544 (774)
Q Consensus 528 ~~et~~dl~~w~~~l~~ 544 (774)
-+.+..+|..|...|..
T Consensus 90 Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 90 EVGDEQQLNSWLAELRY 106 (107)
T ss_pred EcCCHHHHHHHHHHHhc
Confidence 99999999999987753
No 188
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=70.99 E-value=9 Score=35.31 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=37.7
Q ss_pred ccccceeeEeeeccCCCCC-cEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHH
Q psy4897 490 AHVFPLVSTRLVSSSRHSD-VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQAT 546 (774)
Q Consensus 490 ~~~~~l~~~r~~~~s~~~~-~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~ 546 (774)
.++|||-..-++.-.+..+ +.+|.+.++. +++.|.+||.+|...|...|-+|.
T Consensus 45 ~~~~~L~~i~V~ni~D~~~~kNafki~t~~----~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 45 ESTYSLNSVAVVNVKDRENAKKVLKLLIFP----ESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEehHHeEEEecCCCcCcCceEEEEeCC----ccEEEEeCCHHHHHHHHHHHHHHh
Confidence 4445554444432222222 4999999985 589999999999999999998774
No 189
>KOG2921|consensus
Probab=70.90 E-value=2.3 Score=47.54 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=40.5
Q ss_pred EEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHh
Q psy4897 38 IKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93 (774)
Q Consensus 38 I~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ 93 (774)
+..-..++.++.|.+|...||+----+|.+||+|.++||.+|.+.+ +-...++.
T Consensus 212 LsPfya~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~--dW~ecl~t 265 (484)
T KOG2921|consen 212 LSPFYAHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVS--DWLECLAT 265 (484)
T ss_pred hchhhhcCceEEEEeccccCCCcCcccCCccceEEecCCcccCCHH--HHHHHHHh
Confidence 3334455678999999999998755469999999999999999763 33444443
No 190
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=70.47 E-value=7.9 Score=32.74 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCceEEEecCC-CceeEEEeeCChHhHHHHHHHHHH
Q psy4897 320 SENRTLELHSPD-GVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 320 ~r~r~FeL~s~d-g~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
...++|.|...+ +...++++|++.+++..|+.||..
T Consensus 62 ~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 62 DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 356899999876 567899999999999999999864
No 191
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=70.27 E-value=0.15 Score=56.09 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=49.6
Q ss_pred cccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcce
Q psy4897 316 KHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLAR 388 (774)
Q Consensus 316 ~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~~ 388 (774)
+.+..+||+.++.+.|..+ ++|...++ ...+||||.+..--.. -+++++.++| .|+.+||+|.|-.+
T Consensus 49 ~~N~~kNRy~di~p~D~sR-V~L~~~~~-~~~dYINAsyV~g~~~----~~~yIaTQ~Pl~~T~~dFW~MVwe~~ 117 (312)
T PHA02747 49 PENQPKNRYWDIPCWDHNR-VILDSGGG-STSDYIHANWIDGFED----DKKFIATQGPFAETCADFWKAVWQEH 117 (312)
T ss_pred chhhccCCCCCCCCCCCCE-eEecCCCC-CCCCcEEeeeecCCCC----CCeEEEeCCCcchhHHHHHHHHHhcc
Confidence 3456789999999999994 56665433 3468999999753322 2467888888 88999999999753
No 192
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=69.89 E-value=12 Score=41.72 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=42.4
Q ss_pred EEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH-cCcc---eEEEEEE
Q psy4897 203 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR-AGKL---VELEVKY 258 (774)
Q Consensus 203 ~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~-~g~~---V~L~V~R 258 (774)
++..+..+++|..++ +++||+|+++|+..+.+ .+++...+.. .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhccCCcccceEEEEEe
Confidence 455799999999998 99999999999999988 6777766665 4444 5677766
No 193
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=69.40 E-value=7.7 Score=34.64 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni 357 (774)
+..+|+|... .++.++.+++.+++.+|++||...|
T Consensus 67 ~~~~f~i~t~--~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 67 RKGFFDLKTS--KRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred CceEEEEEeC--CceEEEECCCHHHHHHHHHHHHhhC
Confidence 4457888653 4689999999999999999997654
No 194
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=67.99 E-value=0.16 Score=55.71 Aligned_cols=64 Identities=14% Similarity=-0.008 Sum_probs=48.2
Q ss_pred ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcc
Q psy4897 317 HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLA 387 (774)
Q Consensus 317 ~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~ 387 (774)
.+..+||+-++.+.|..+ ++|...++ ..+||||.+..--.. -..+++.++| +|+.+||+|.|-.
T Consensus 51 ~N~~KNRy~~i~~~D~tR-V~L~~~~~--~~dYINAsyI~g~~~----~~~fIatQ~Pl~~T~~dFW~MVw~~ 116 (303)
T PHA02742 51 KNMKKCRYPDAPCFDRNR-VILKIEDG--GDDFINASYVDGHNA----KGRFICTQAPLEETALDFWQAIFQD 116 (303)
T ss_pred hhhhcCCCCCCCCCCCCE-EEeCCCCC--CCCcEEEeeecCCCC----CCeEEEECCCCcccHHHHHHHHhhc
Confidence 356689999999999985 56665443 468999999754322 2467888888 8999999999964
No 195
>KOG2921|consensus
Probab=67.27 E-value=8.5 Score=43.29 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCChhhhccCCCCCCEEEEECCeecCCCCHHHHHHHHHH
Q psy4897 199 KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 247 (774)
Q Consensus 199 ~~pi~Is~V~pgspA~~aG~L~~GD~IlaVNG~~V~~~t~~e~v~~Lk~ 247 (774)
..++.|..|...||+--..+|.+||+|.++||-+|.+ .+++.+-++.
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 4678999999999997665699999999999999988 7899888876
No 196
>KOG4228|consensus
Probab=66.55 E-value=0.57 Score=58.25 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=52.5
Q ss_pred ccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcc
Q psy4897 315 YKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLA 387 (774)
Q Consensus 315 ~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~ 387 (774)
...+..+||++++.++|.. +++|..-++-...+||||.+.+= .+--+.|++.++| .|.+|||.|.|-.
T Consensus 562 ~~en~~KNRY~nilayD~s-RV~L~~i~Gd~~sDYINAnyIdG----y~e~n~yIaaQgP~~eTv~DFWRMVWEq 631 (1087)
T KOG4228|consen 562 KKENKQKNRYENILAYDHS-RVILPPIEGDPNSDYINANYIDG----YKEPNAYIAAQGPRPETVGDFWRMVWEQ 631 (1087)
T ss_pred cccccccccCCcchhhhcc-eeeecccCCCccccceeeeeeec----ccccccceeccCCcccchHHHHHHheec
Confidence 3456669999999999999 57777777777889999988642 2222457778888 7788999999974
No 197
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=66.37 E-value=19 Score=33.42 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=34.2
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT 361 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~ 361 (774)
-.++|.|.++. .++++.|++.++-..|+++|..+|+.+.
T Consensus 64 ~~n~f~I~~~~--kSf~v~A~s~~eK~eWl~~i~~ai~~~l 102 (104)
T cd01218 64 ERNGWIIKTPT--KSFAVYAATETEKREWMLHINKCVTDLL 102 (104)
T ss_pred ccceEEEecCC--eEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 46899999864 4799999999999999999999998664
No 198
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=66.13 E-value=11 Score=31.50 Aligned_cols=35 Identities=31% Similarity=0.659 Sum_probs=30.2
Q ss_pred CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
...++|.|....+ ....++|++.+++..|+++|..
T Consensus 61 ~~~~~f~i~~~~~-~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 61 GRKNCFEIRTPDG-RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCCcEEEEecCCC-cEEEEEeCCHHHHHHHHHHHhc
Confidence 3578999997765 6899999999999999999864
No 199
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=61.84 E-value=1.1e+02 Score=29.04 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=52.3
Q ss_pred CceEEEEEEecc--ceeEEecCCCCChhcccCcccccceeeEeeecc---CCCCC-----cEEEEEEeCCCCceeeEEEE
Q psy4897 459 DRWVSIFGAVTE--RELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS---SRHSD-----VIVFSVRCGTPQGVATHHLR 528 (774)
Q Consensus 459 ~~w~~~~~~l~~--~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~---s~~~~-----~~~f~~~~~t~~g~~~~~~~ 528 (774)
.+...+|+-|.. +.|||.+.-|.+...=..-.....+.+..-|.. ++... .++|.|.++. ++--|.
T Consensus 28 ~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~----R~L~l~ 103 (123)
T PF12814_consen 28 EKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD----RSLDLT 103 (123)
T ss_pred CCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC----eEEEEE
Confidence 344556666655 777777766644333333344455555543332 22222 2788887764 689999
Q ss_pred ecChhHHHHHHHHHHHH
Q psy4897 529 AETHRDLANWARTLVQA 545 (774)
Q Consensus 529 ~et~~dl~~w~~~l~~~ 545 (774)
++|.++...|..+|--=
T Consensus 104 a~s~~~~~~W~~aL~~L 120 (123)
T PF12814_consen 104 APSRERHEIWFNALRYL 120 (123)
T ss_pred eCCHHHHHHHHHHHHHH
Confidence 99999999999988643
No 200
>KOG3640|consensus
Probab=61.73 E-value=12 Score=46.27 Aligned_cols=87 Identities=16% Similarity=0.318 Sum_probs=54.3
Q ss_pred CceEEEEEEeccceeEEecCCCCChhcccCcccccceee-E-eeeccCC---CCCcEEEEEEe-------CCCCcee---
Q psy4897 459 DRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVS-T-RLVSSSR---HSDVIVFSVRC-------GTPQGVA--- 523 (774)
Q Consensus 459 ~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~-~-r~~~~s~---~~~~~~f~~~~-------~t~~g~~--- 523 (774)
..|-++||+|-+.++.|+..|-.++. -.|...--|-. | +=+-+.+ ....++|.|.+ -++.+++
T Consensus 1006 GaWhRyWc~L~gg~I~fWk~PdDEkr--K~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~ 1083 (1116)
T KOG3640|consen 1006 GAWHRYWCALHGGEIKFWKYPDDEKR--KVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRL 1083 (1116)
T ss_pred chhhhhhHHhcCCeeeeecCcchhcc--cCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcc
Confidence 34999999999999999988876652 12222111111 1 1010111 12227777773 2333443
Q ss_pred eEEEEecChhHHHHHHHHHHHHHH
Q psy4897 524 THHLRAETHRDLANWARTLVQATH 547 (774)
Q Consensus 524 ~~~~~~et~~dl~~w~~~l~~~~~ 547 (774)
-|++++||..||..|..+|-+...
T Consensus 1084 Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1084 RVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eeeeecccHHHHHHHHHHHHHHHH
Confidence 489999999999999999987754
No 201
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.29 E-value=19 Score=33.73 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=42.2
Q ss_pred cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
.+.+|+..-.+.| +...+...+.|+|..+.-. +..+-|.+.++.+.|+..+..++.
T Consensus 55 qGkLPL~~i~v~~-lEd~e~~~~aFeI~G~li~-~i~v~C~~~~e~~~Wl~hL~~~~~ 110 (111)
T cd01225 55 QGKLPLTGIIVTR-LEDTEALKNAFEISGPLIE-RIVVVCNNPQDAQEWVELLNANNP 110 (111)
T ss_pred eeeecccccEEec-hHhccCccceEEEeccCcC-cEEEEeCCHHHHHHHHHHHHhhcC
Confidence 3556776666665 3444556789999988766 567789999999999999988763
No 202
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=60.73 E-value=0.27 Score=54.37 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=48.9
Q ss_pred cccCCCCceEEEecCCCceeEEEeeCC-------------------hHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--
Q psy4897 316 KHYDSENRTLELHSPDGVHSCILRASD-------------------ASEASLWFNTLHSTLHVLTLKSIAEANKILGP-- 374 (774)
Q Consensus 316 ~~~d~r~r~FeL~s~dg~~~~~Lr~~d-------------------~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~-- 374 (774)
+.+..+||+-++.++|..| ++|.... .....+||||.+..--.. -.++++.++|
T Consensus 49 ~~N~~KNRy~di~p~D~sR-V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~dYINAsyV~g~~~----~~~fIaTQ~Pl~ 123 (323)
T PHA02746 49 KENLKKNRFHDIPCWDHSR-VVINAHESLKMFDVGDSDGKKIEVTSEDNAENYIHANFVDGFKE----ANKFICAQGPKE 123 (323)
T ss_pred hhhccccCCCCCCCCcCCE-EEecCCCCccccccccccccccccccCCCCCCeEEEecccCCCC----CCeEEEeCCCCh
Confidence 3466789999999999985 5666421 234479999999764322 2457888888
Q ss_pred CCCCCceEEEEcc
Q psy4897 375 ALLGDLQLIGWLA 387 (774)
Q Consensus 375 ~~~~~~~~mGWl~ 387 (774)
+|+.+||+|.|-.
T Consensus 124 ~T~~dFW~MIwe~ 136 (323)
T PHA02746 124 DTSEDFFKLISEH 136 (323)
T ss_pred hhHHHHHHHHHhh
Confidence 8899999999963
No 203
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.29 E-value=20 Score=33.64 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=32.3
Q ss_pred CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
.-.++|.|.+.+. +++++.|+++++-.+|++|+...+.
T Consensus 73 ~~knaF~I~~~~~-~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 73 EYKNAFEIILKDG-NSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred ccCceEEEEcCCC-CEEEEEECCHHHHHHHHHHHHHHhc
Confidence 3468999998774 5899999999999999999987653
No 204
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=59.62 E-value=30 Score=32.55 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=30.5
Q ss_pred cEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHH
Q psy4897 509 VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQAT 546 (774)
Q Consensus 509 ~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~ 546 (774)
+++|.|.+..+ .+|.|.+.|..+...|..+|+.+.
T Consensus 75 knaF~I~~~~~---~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 75 KNAFEIILKDG---NSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CceEEEEcCCC---CEEEEEECCHHHHHHHHHHHHHHh
Confidence 49999998643 589999999999999999998765
No 205
>KOG4424|consensus
Probab=57.97 E-value=1.4e+02 Score=35.63 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCceEEEEEEeccc---eeEEecCCCCChhcccCccccccee--eEeeeccCCCCCc-EEEEEEeCCCCceeeEEEEec
Q psy4897 457 STDRWVSIFGAVTER---ELRLYESAPWSPEAWSTPAHVFPLV--STRLVSSSRHSDV-IVFSVRCGTPQGVATHHLRAE 530 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~---~l~~y~~~p~~~~~~~~~~~~~~l~--~~r~~~~s~~~~~-~~f~~~~~t~~g~~~~~~~~e 530 (774)
....|.-.|+++-.+ .+|.|.++....+.=..|++.+-+. +.+ ...|. ++|.+ .+.. ..+||++|
T Consensus 509 ~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~-----~~~D~~~~~k~-~~s~---~~~~~~a~ 579 (623)
T KOG4424|consen 509 AGKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFV-----RREDLFHVFKL-VQSH---LSWHLAAD 579 (623)
T ss_pred cCccceeeeeeccCCCCccccccCCccccccccccccCccccCCCccc-----ccchhcchhhh-hhhc---ceeeeccC
Confidence 367899888887544 5899999998666666666666433 111 33444 55554 4434 48999999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q psy4897 531 THRDLANWARTLVQATHS 548 (774)
Q Consensus 531 t~~dl~~w~~~l~~~~~~ 548 (774)
|.+=--.|..-|-.|++-
T Consensus 580 ~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 580 DEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred CHHHHHHHHHHHHhhhcc
Confidence 996556799998888864
No 206
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=57.55 E-value=1.1e+02 Score=27.84 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=55.5
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCC-CCCcEEEEEEeCCCCceeeEEEEecChhHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSR-HSDVIVFSVRCGTPQGVATHHLRAETHRDLA 536 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~-~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~ 536 (774)
...+++..+.++...|.+.+.-. ......|||.........+ ..+.++|-.+.+......-|.|..++.
T Consensus 38 ~~~~~~v~l~vs~~gv~l~d~~~------~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~---- 107 (123)
T cd00934 38 GEKGQKVILSVSSDGVKLIDPKT------KEVLASHPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKV---- 107 (123)
T ss_pred ccCCCEEEEEEEcCcEEEEeCCC------CcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCch----
Confidence 46678999999999999998854 3456777776654322222 222377777777656888999999888
Q ss_pred HHHHHHHHHHHHHH
Q psy4897 537 NWARTLVQATHSCV 550 (774)
Q Consensus 537 ~w~~~l~~~~~~~~ 550 (774)
++.|+.+...|-
T Consensus 108 --a~~i~~~l~~af 119 (123)
T cd00934 108 --AEPIALTLGQAF 119 (123)
T ss_pred --HHHHHHHHHHHH
Confidence 445555555443
No 207
>PLN02866 phospholipase D
Probab=55.48 E-value=61 Score=41.24 Aligned_cols=81 Identities=17% Similarity=0.386 Sum_probs=53.2
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeE----------eeeccCC----CCCcEEEEEEeCCCCce
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVST----------RLVSSSR----HSDVIVFSVRCGTPQGV 522 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~----------r~~~~s~----~~~~~~f~~~~~t~~g~ 522 (774)
...+|+++|++||+..|.+.+.|=..+ +...+ |... .+.-+.. ..-.+.|.|.+++
T Consensus 214 ~~~~w~k~w~v~k~~~l~~~~~p~~~~-----~~~v~-lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~---- 283 (1068)
T PLN02866 214 CNDNWQKVWAVLKPGFLALLEDPFDAK-----PLDII-VFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGN---- 283 (1068)
T ss_pred ecCchheeEEEEeccEEEEEecCCCCc-----eeEEE-EEecccccccCCCcceeecccccccCCCcceEEEecCc----
Confidence 357899999999999998775554322 22111 1110 0000001 1113789998886
Q ss_pred eeEEEEecChhHHHHHHHHHHHHHH
Q psy4897 523 ATHHLRAETHRDLANWARTLVQATH 547 (774)
Q Consensus 523 ~~~~~~~et~~dl~~w~~~l~~~~~ 547 (774)
++..|++.+.+.+..|..+|..+..
T Consensus 284 r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 284 RSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred eEEEEEECCHHHHHHHHHHHHHHHh
Confidence 4689999999999999999998874
No 208
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.92 E-value=20 Score=33.90 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=36.5
Q ss_pred CceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhh
Q psy4897 322 NRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT 361 (774)
Q Consensus 322 ~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~ 361 (774)
.++|+|-.-++.+++.+-|++.++=..|..|+..+|+++.
T Consensus 76 ~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sni~ 115 (116)
T cd01223 76 KYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSNIR 115 (116)
T ss_pred EEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 4699999999989999999999999999999999998764
No 209
>KOG0930|consensus
Probab=52.38 E-value=34 Score=36.98 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCCCceEEEecCCCceeEE--------------------EeeCChHhHHHHHHHHHHHhhhhhHH
Q psy4897 319 DSENRTLELHSPDGVHSCI--------------------LRASDASEASLWFNTLHSTLHVLTLK 363 (774)
Q Consensus 319 d~r~r~FeL~s~dg~~~~~--------------------Lr~~d~~~~~~W~~Ai~~ni~~l~~~ 363 (774)
.++++||||-.+.++...| |.+.+.++...||++|...|......
T Consensus 317 P~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy 381 (395)
T KOG0930|consen 317 PKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY 381 (395)
T ss_pred CCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence 4488999998877643333 44566789999999999999854443
No 210
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=51.62 E-value=1.5e+02 Score=28.29 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHR 533 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~ 533 (774)
...|++..+.|+...|.+-+.-. ....+.|||...+.-.........+|-.++++ +...-|.|..|+..
T Consensus 36 ~~~~~~v~l~Vs~~~l~l~d~~t------~~~l~~~~i~~Isf~~~gk~~r~FafI~~~~~-~~~~CHVF~c~~~a 104 (123)
T cd01216 36 WEDWKDLNMDLAPSTLSLIDPDN------LTVLHECRVRYLSFWGVGRDVRDFAFIMRTER-RRFMCHVFRCEPNA 104 (123)
T ss_pred cccCeEEEEEEecCcEEEEcCCC------CeEEEEEEeeEEEEEEcCCCCcEEEEEEEcCC-CeEEEEEEEcCCCH
Confidence 56799999999999999988764 45677777776653322222223799999987 68899999998863
No 211
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=51.39 E-value=18 Score=33.67 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=23.1
Q ss_pred eEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 324 TLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 324 ~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
.|-+.. ++++++|+|++.++-.+|+.||+.+
T Consensus 82 ~~~i~T--~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 82 VFSIFT--PTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEEE---SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CcEEEC--CCcEEEEEECCHHHHHHHHHHHHhC
Confidence 344433 3568999999999999999999864
No 212
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=51.32 E-value=48 Score=30.97 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCCceEEEe--cCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 320 SENRTLELH--SPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 320 ~r~r~FeL~--s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
.+.++|.+. +.++.+.+.|+|++.++.++|+.|..-+
T Consensus 64 ~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 64 QQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred ccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 355788777 4577789999999999999999997654
No 213
>PF15409 PH_8: Pleckstrin homology domain
Probab=50.95 E-value=39 Score=30.51 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=37.8
Q ss_pred cCcccceeeEeeecccccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 301 TRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 301 ~~~ipl~~~~l~R~~~~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
.+++|+..+-++- ..+.+.|+|.+ |.....|++.+.++.+.|++|+..+
T Consensus 40 rGsi~v~~a~is~-----~~~~~~I~ids--g~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 40 RGSIDVSLAVISA-----NKKSRRIDIDS--GDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EeEEEccceEEEe-----cCCCCEEEEEc--CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 4566676665544 45678899976 4567999999999999999998764
No 214
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.08 E-value=28 Score=31.68 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=26.3
Q ss_pred CCCCceEEEecCC-C-ceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 319 DSENRTLELHSPD-G-VHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 319 d~r~r~FeL~s~d-g-~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
+.+.+.|.|...+ . ...-.+.+++.++..+|++||...
T Consensus 62 ~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 62 RPRPNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCCcceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 3466799997333 1 111144689999999999999754
No 215
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=48.68 E-value=46 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=32.0
Q ss_pred CCceEEEecCCC-ceeEEEeeCChHhHHHHHHHHHHHh
Q psy4897 321 ENRTLELHSPDG-VHSCILRASDASEASLWFNTLHSTL 357 (774)
Q Consensus 321 r~r~FeL~s~dg-~~~~~Lr~~d~~~~~~W~~Ai~~ni 357 (774)
.+..|.|.+.+. ..+++++|.+.++-..|+++|...|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 478999988864 4699999999999999999998776
No 216
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=46.91 E-value=28 Score=31.98 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=26.1
Q ss_pred CceEEEecCCCceeEEEeeCChHhHHHHHHHHH
Q psy4897 322 NRTLELHSPDGVHSCILRASDASEASLWFNTLH 354 (774)
Q Consensus 322 ~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~ 354 (774)
.+.|.|.. ..++.+|.|++.+++.+|++||.
T Consensus 75 ~~~f~i~t--~~r~y~l~A~s~ee~~~Wi~~I~ 105 (108)
T cd01266 75 GYGFDIET--IVRDLYLVAKNEEEMTLWVNCIC 105 (108)
T ss_pred ceEEEEEe--CCccEEEEECCHHHHHHHHHHHH
Confidence 45688875 35789999999999999999984
No 217
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=46.19 E-value=97 Score=37.94 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceee-Eeeecc---CCCCCc-EEEEEEeCCCCceeeEEEEecCh
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVS-TRLVSS---SRHSDV-IVFSVRCGTPQGVATHHLRAETH 532 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~-~r~~~~---s~~~~~-~~f~~~~~t~~g~~~~~~~~et~ 532 (774)
.+--+.+|+||+++-|-.|..-|... ..|..+=.+=. +||-.- ..++.. |+|++=-... --.---|.+-+.
T Consensus 20 ~~~~~~Ry~vl~~~~~~~yK~~P~~~---~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~-~~~~~~~~a~~~ 95 (719)
T PLN00188 20 RSYIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE-KYHRITMAAFNI 95 (719)
T ss_pred cccceeEEEEEecchhhhcccCCccc---cccceeeccCCCceEeecCceEEcCceEEEEEEecCCC-ccccEEEecCCH
Confidence 44557999999999999999999775 56666554333 243221 223333 7777754322 113456889999
Q ss_pred hHHHHHHHHHHHHHH
Q psy4897 533 RDLANWARTLVQATH 547 (774)
Q Consensus 533 ~dl~~w~~~l~~~~~ 547 (774)
+|-+.|.++|-+|+-
T Consensus 96 eea~~W~~a~~~a~~ 110 (719)
T PLN00188 96 QEALIWKEKIESVID 110 (719)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998775
No 218
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=45.84 E-value=29 Score=35.49 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=31.1
Q ss_pred cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEE
Q psy4897 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 74 (774)
Q Consensus 33 gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsV 74 (774)
..|+.+.. .+..+.|..|..||||+++| +.-|++|++|
T Consensus 112 ~~GL~l~~---e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 112 AAGLTLME---EGGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred hCCCEEEe---eCCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 45666653 34569999999999999998 9999999887
No 219
>KOG3531|consensus
Probab=44.48 E-value=13 Score=45.47 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=57.0
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLAN 537 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~ 537 (774)
...|++-|++.|.-|||+|.|-..+-.-=+-|+-.|.+- +=.+..+.-+.|+|.+.--. -.++||+|+.--..+
T Consensus 937 ssgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs--~P~~~d~i~K~~vfkl~fk~----hvyffraes~yt~~r 1010 (1036)
T KOG3531|consen 937 SSGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVS--IPAEPDPIQKDYVFKLKFKS----HVYFFRAESYYTFER 1010 (1036)
T ss_pred cccceeeeeeecceeeEeecccccccccccccccccccC--CCCCCCCcchhheeeeehhh----hHHHHhhhhhhhhhh
Confidence 346999999999999999999997644444444444211 10001111222999998653 258999999999999
Q ss_pred HHHHHHHHH
Q psy4897 538 WARTLVQAT 546 (774)
Q Consensus 538 w~~~l~~~~ 546 (774)
|..-|..++
T Consensus 1011 w~evi~~a~ 1019 (1036)
T KOG3531|consen 1011 WMEVITDAP 1019 (1036)
T ss_pred HHHHhhcCC
Confidence 998876654
No 220
>KOG0793|consensus
Probab=44.46 E-value=1.4 Score=52.18 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=53.3
Q ss_pred ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcce
Q psy4897 317 HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLAR 388 (774)
Q Consensus 317 ~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~~ 388 (774)
.+-++||.-.+.++|.. .+.|..+++.+-.+||||..+-=+.+- +.-|++.++| +|+.+||+|.|-+-
T Consensus 758 ~~a~kNR~~a~LpyDhs-rV~l~~~~s~s~~dYiNAS~I~DhDPR---~paYIAtQgPl~stiA~FWQmvWe~G 827 (1004)
T KOG0793|consen 758 ENAPKNRSLAVLPYDHS-RVLLKAENSHSHSDYINASPIMDHDPR---NPAYIATQGPLPSTIADFWQMVWESG 827 (1004)
T ss_pred ccccccCCCCccccccc-eeeeccccCccccccccccccccCCCC---ccceeeccCCCchHHHHHHHHHHHcC
Confidence 35558888899999988 688899999999999999765444332 2457788888 78899999999864
No 221
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=43.60 E-value=1.5e+02 Score=27.49 Aligned_cols=74 Identities=9% Similarity=0.012 Sum_probs=45.3
Q ss_pred eEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHHH
Q psy4897 461 WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWAR 540 (774)
Q Consensus 461 w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~ 540 (774)
++++.++||+.-=++|-.|.-..--+..|.... +++ ...+...|.|.++. ++++|.. ...+-..|.+
T Consensus 27 ~kkR~liLTd~PrL~Yvdp~~~~~KGeI~~~~~----l~v----~~k~~~~F~I~tp~----RtY~l~d-~~~~A~~W~~ 93 (104)
T PF14593_consen 27 AKKRQLILTDGPRLFYVDPKKMVLKGEIPWSKE----LSV----EVKSFKTFFIHTPK----RTYYLED-PEGNAQQWVE 93 (104)
T ss_dssp EEEEEEEEETTTEEEEEETTTTEEEEEE--STT-----EE----EECSSSEEEEEETT----EEEEEE--TTS-HHHHHH
T ss_pred EEEEEEEEccCCEEEEEECCCCeECcEEecCCc----eEE----EEccCCEEEEECCC----cEEEEEC-CCCCHHHHHH
Confidence 799999999995556655554433344444421 121 11223689999984 6787765 6667788999
Q ss_pred HHHHHHH
Q psy4897 541 TLVQATH 547 (774)
Q Consensus 541 ~l~~~~~ 547 (774)
+|.....
T Consensus 94 ~I~~~~~ 100 (104)
T PF14593_consen 94 AIEEVKK 100 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 222
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.29 E-value=1.3e+02 Score=28.44 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=58.2
Q ss_pred EEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC-CCcEEEEEEeCCCCceeeEEEEecChhHHHHHHH
Q psy4897 462 VSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH-SDVIVFSVRCGTPQGVATHHLRAETHRDLANWAR 540 (774)
Q Consensus 462 ~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~-~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~ 540 (774)
.-+|++|=...|++...-|... +..-..-+||-...+.+-... ..+++|.|.-. .+++-.+..-+..|+..|.-
T Consensus 29 ~eRyLvLFp~~LlilS~s~r~s--Gf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~---li~~i~v~C~~~~e~~~Wl~ 103 (111)
T cd01225 29 RERYLVLFPNVLLMLSASPRMS--GFIYQGKLPLTGIIVTRLEDTEALKNAFEISGP---LIERIVVVCNNPQDAQEWVE 103 (111)
T ss_pred ceeEEEEcCceEEEEEcCCCcc--ceEEeeeecccccEEechHhccCccceEEEecc---CcCcEEEEeCCHHHHHHHHH
Confidence 4689999999999998877443 566666777766655432111 22499999644 67889999999999999999
Q ss_pred HHHH
Q psy4897 541 TLVQ 544 (774)
Q Consensus 541 ~l~~ 544 (774)
.|.+
T Consensus 104 hL~~ 107 (111)
T cd01225 104 LLNA 107 (111)
T ss_pred HHHh
Confidence 8876
No 223
>KOG0521|consensus
Probab=39.85 E-value=35 Score=42.41 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHH
Q psy4897 320 SENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLK 363 (774)
Q Consensus 320 ~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~ 363 (774)
.+.+||+|-+ .+.+.++++++.....+|+.+|+..+..+...
T Consensus 333 drr~CF~iiS--~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~ 374 (785)
T KOG0521|consen 333 DRRFCFEIIS--PTKSYLLQAESEKDCQDWISALQNSILSALNS 374 (785)
T ss_pred cceeeEEEec--CCcceEEecCchhHHHHHHHHHHHHHHHHHhc
Confidence 4778999999 77789999999999999999999988855543
No 224
>KOG0521|consensus
Probab=39.61 E-value=34 Score=42.49 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=53.4
Q ss_pred CCCceEEEEEEeccceeEEec---CCCCChhcccCcccccceeeEeeecc-CCC-CCcEEEEEEeCCCCceeeEEEEecC
Q psy4897 457 STDRWVSIFGAVTERELRLYE---SAPWSPEAWSTPAHVFPLVSTRLVSS-SRH-SDVIVFSVRCGTPQGVATHHLRAET 531 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~---~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~-~~~~~f~~~~~t~~g~~~~~~~~et 531 (774)
....|.++|+.+.+..+-++. +++. ...-.|..+ .|+. ... ..++||.+.+++ ++|+|-+|+
T Consensus 287 ~~~tw~r~~f~~q~~~l~~~~r~~~~~~--------~~~~dL~~c-svk~~~~~~drr~CF~iiS~t----ks~~lQAes 353 (785)
T KOG0521|consen 287 ASKTWKRRWFSIQDGQLGYQHRGADAEN--------VLIEDLRTC-SVKPDAEQRDRRFCFEIISPT----KSYLLQAES 353 (785)
T ss_pred chhhHHhhhhhhhccccccccccccccc--------cccccchhc-cccCCcccccceeeEEEecCC----cceEEecCc
Confidence 367899999998866655432 2221 111111111 1222 222 344999999976 589999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy4897 532 HRDLANWARTLVQATHSCVL 551 (774)
Q Consensus 532 ~~dl~~w~~~l~~~~~~~~~ 551 (774)
+.|...|..+|...+-.+-+
T Consensus 354 ~~d~~~Wi~~i~nsi~s~l~ 373 (785)
T KOG0521|consen 354 EKDCQDWISALQNSILSALN 373 (785)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 99999999999887765543
No 225
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=39.32 E-value=3.2e+02 Score=25.39 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=49.7
Q ss_pred CCCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeecc-CCCCCcEEEEEEeCCCCceeeEEEEecChh
Q psy4897 457 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSS-SRHSDVIVFSVRCGTPQGVATHHLRAETHR 533 (774)
Q Consensus 457 ~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~-s~~~~~~~f~~~~~t~~g~~~~~~~~et~~ 533 (774)
....|+++.+.++..-+.+.+...- .....|||....-... +...+.++|-.+.+..+-..-|.|..+...
T Consensus 39 ~~~~~~~v~l~vs~~gv~v~~~~~~------~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~a 110 (134)
T smart00462 39 EKKEPQKVILSISSRGVKLIDEDTK------AVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKAA 110 (134)
T ss_pred ccCCCCEEEEEEECCcEEEEECCCC------eEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCchH
Confidence 3567899999999999999987542 4777788775542222 222223677777776545889999998864
No 226
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=39.19 E-value=72 Score=37.28 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=31.3
Q ss_pred cEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHH
Q psy4897 509 VIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQAT 546 (774)
Q Consensus 509 ~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~ 546 (774)
.|+|++-.-++ +..+|-+.++.|.-.|.++|++++
T Consensus 455 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 455 AHVFAVAFKTG---RRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CcEEEEEecCC---cEEEEecCCchhHHHHHHHHHHhc
Confidence 49999987765 889999999999999999999986
No 227
>KOG3751|consensus
Probab=38.19 E-value=72 Score=37.44 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCCceEEEEEEeccceeEEecCCCCChh----cccCcccc---cceeeEeeeccCCCCCcEEEEEEeCCCC--ceeeEE
Q psy4897 456 DSTDRWVSIFGAVTERELRLYESAPWSPE----AWSTPAHV---FPLVSTRLVSSSRHSDVIVFSVRCGTPQ--GVATHH 526 (774)
Q Consensus 456 ~~~~~w~~~~~~l~~~~l~~y~~~p~~~~----~~~~~~~~---~~l~~~r~~~~s~~~~~~~f~~~~~t~~--g~~~~~ 526 (774)
++.+.||++|++|+-.-||.+---- +++ ....-.|. |..+.-|--..++.. |+|++..---+ +-.-.+
T Consensus 328 dgkKsWKk~yf~LR~SGLYys~K~t-sk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd--~~f~~K~~~~~~~~r~lk~ 404 (622)
T KOG3751|consen 328 DGKKSWKKHYFVLRRSGLYYSTKGT-SKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTD--YGFCIKPNKLRNKRRFLKM 404 (622)
T ss_pred cccccceeEEEEEecCcceEccCCC-CCCchhhHHHHhcccCceEEeecchhccCCCCC--ceEEeeeccccCcccceee
Confidence 4688999999999999999763221 111 12223333 333333421112211 77777552111 123578
Q ss_pred EEecChhHHHHHHHHHHHH
Q psy4897 527 LRAETHRDLANWARTLVQA 545 (774)
Q Consensus 527 ~~~et~~dl~~w~~~l~~~ 545 (774)
|++|..+-+..|..||--+
T Consensus 405 lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 405 LCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred eecccchhHHHHHHHHHHH
Confidence 9999999999999887544
No 228
>PHA02738 hypothetical protein; Provisional
Probab=37.19 E-value=0.92 Score=50.11 Aligned_cols=63 Identities=17% Similarity=0.069 Sum_probs=46.5
Q ss_pred cCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcc
Q psy4897 318 YDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLA 387 (774)
Q Consensus 318 ~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~ 387 (774)
+..+||+-++.+.|..+ ++|..... ..+||||.+..--... ++++..++| +|+++||+|.|-.
T Consensus 49 N~~kNR~~~v~~~d~sR-V~L~~~~~--~~dYINAsyVdg~~~~----~kfI~TQ~Pl~~T~~dFW~MVwe~ 113 (320)
T PHA02738 49 NRKLNRYLDAVCFDHSR-VILPAERN--RGDYINANYVDGFEYK----KKFICGQAPTRQTCYDFYRMLWME 113 (320)
T ss_pred hhhhCCCCCcCCCcCCE-EEeCCCCC--CCCceEeEEecCCCCC----ceeEEecCCChHHHHHHHHHHHHh
Confidence 45689999999999985 46654332 3689999997532222 357788888 7899999999985
No 229
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.09 E-value=55 Score=30.89 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHH
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHST 356 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~n 356 (774)
+.++|.|.. ..+++.|.|++..++.+|++||..+
T Consensus 88 ~~~~~~i~t--~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 88 LRHGLKITN--SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CceEEEEEc--CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 456788854 4567999999999999999999753
No 230
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=34.21 E-value=1.1e+02 Score=27.97 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHH
Q psy4897 504 SRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQAT 546 (774)
Q Consensus 504 s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~ 546 (774)
+...|.++|.|.+.. +.-..+.|.+-|..+...|..+|.+++
T Consensus 54 ~~~~d~~~F~v~~~~-~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 54 HLPGEPLCFRVIPFD-DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCCCCCcEEEEEecC-CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 344567999996653 333589999999999999999998875
No 231
>KOG0248|consensus
Probab=33.89 E-value=48 Score=39.98 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCC-----CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCC
Q psy4897 432 APWSPEAWSTPAHNGRASSESSGDDS-----TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRH 506 (774)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~ 506 (774)
+|.+....+.+ |.++|+|+-.- ...|+++|+++|...+.||..+.-.-+.-..+...-.. +.++ ..
T Consensus 235 ~~~~~tsys~~----~e~~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~--~~~~---~~ 305 (936)
T KOG0248|consen 235 TPTSRTSLIPS----RETMEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSV--TKLE---QQ 305 (936)
T ss_pred CccccccccCC----cchhhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCccccccc--ceee---cc
Confidence 44555555555 47777776322 35799999999999999999987655544444411100 0111 22
Q ss_pred CCcEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897 507 SDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATH 547 (774)
Q Consensus 507 ~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~ 547 (774)
...+.|.+.+.| ..++|-.||.+=++-|.+-|..++.
T Consensus 306 ~~s~~fqli~~t----~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 306 GAAYAFQLITST----DKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred chhHHhhhhhhc----eeEEEeccChhhhhhhHHHHHHHHH
Confidence 334888888876 4799999999999999998877764
No 232
>KOG2059|consensus
Probab=31.54 E-value=44 Score=40.41 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeec---cCCCCCcEEEEEEeCCCCceeeEEEEecChhH
Q psy4897 458 TDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVS---SSRHSDVIVFSVRCGTPQGVATHHLRAETHRD 534 (774)
Q Consensus 458 ~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~---~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~d 534 (774)
...+|.+|+-||..+|-+-.+|-+ .|..+-||-..|-|- ...-..+++|.|-+.+ ++-||-+-+.-|
T Consensus 583 ~~~FKKryf~LT~~~Ls~~Ksp~~------q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d----rtly~Q~~n~vE 652 (800)
T KOG2059|consen 583 KKNFKKRYFRLTTEELSYAKSPGK------QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD----RTLYVQAKNCVE 652 (800)
T ss_pred hhhhhheEEEeccceeEEecCCcc------CcccceeHHHHHHHHHhhhhccCCCceEEEEecC----cceeEecCCchH
Confidence 466889999999999988877763 567777777777443 2334456999999987 489999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q psy4897 535 LANWARTLVQATHSCVLNQRQ 555 (774)
Q Consensus 535 l~~w~~~l~~~~~~~~~~~~~ 555 (774)
.+.|..+|...+..+...+.+
T Consensus 653 andWldaL~kvs~~N~~rLas 673 (800)
T KOG2059|consen 653 ANDWLDALRKVSCCNQNRLAS 673 (800)
T ss_pred HHHHHHHHHHHhccCcchhhh
Confidence 999999999988777666654
No 233
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=30.83 E-value=1.8 Score=47.46 Aligned_cols=56 Identities=5% Similarity=-0.191 Sum_probs=39.9
Q ss_pred ceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcce
Q psy4897 323 RTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLAR 388 (774)
Q Consensus 323 r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~~ 388 (774)
|+.++.+.|..+ +.|...+ +||||.+..--.- -+++++.++| +|+++||+|.|-..
T Consensus 58 r~~~i~~~D~sR-V~L~~~~-----~YINAnyVdG~~~----~~~fIaTQ~Pl~~T~~dFW~MVwe~~ 115 (298)
T PHA02740 58 LALHITRLLHRR-IKLFNDE-----KVLDARFVDGYDF----EQKFICIINLCEDACDKFLQALSDNK 115 (298)
T ss_pred ccCCcCCccCce-EEecCCC-----CcEEEEEecCCCC----CCcEEEecCCchhhHHHHHHHHHhcC
Confidence 467888999885 4554433 5888888643222 3457788888 88999999999753
No 234
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.48 E-value=93 Score=29.22 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=31.2
Q ss_pred CceEEEecCCCceeEEEeeCChHhHHHHHHHHHH
Q psy4897 322 NRTLELHSPDGVHSCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 322 ~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
.++|.|...++...+++.|++.++-..|++|+..
T Consensus 72 knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 72 KNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999864
No 235
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.34 E-value=67 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.1
Q ss_pred CcEEEEEEeCC--CCceeeEEEEecChhHHHHHHHHH
Q psy4897 508 DVIVFSVRCGT--PQGVATHHLRAETHRDLANWARTL 542 (774)
Q Consensus 508 ~~~~f~~~~~t--~~g~~~~~~~~et~~dl~~w~~~l 542 (774)
..+.|.|..-. ..--....|+++|..|.++|..||
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al 118 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSAL 118 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhc
Confidence 34889986321 112357999999999999999887
No 236
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=28.07 E-value=32 Score=42.97 Aligned_cols=20 Identities=35% Similarity=0.793 Sum_probs=17.1
Q ss_pred cccccCceEEEEecCCCcce
Q psy4897 727 MSSDDGVKLLWLDFGSEEGE 746 (774)
Q Consensus 727 ~~~dd~~~~~~~~f~~~~~~ 746 (774)
.+.|--+|.|||||||.-|+
T Consensus 501 l~~d~~~rt~fldfgg~tg~ 520 (912)
T TIGR02171 501 LAKDGSKRTLFLDFGGSTGQ 520 (912)
T ss_pred hhccCCcceEEEecCCccch
Confidence 45788899999999988875
No 237
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=28.04 E-value=1.5 Score=46.53 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=46.0
Q ss_pred ccCCCCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCC--CCCCCceEEEEcc
Q psy4897 317 HYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGP--ALLGDLQLIGWLA 387 (774)
Q Consensus 317 ~~d~r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~--~~~~~~~~mGWl~ 387 (774)
.+-.+||+-++.+.|..+ +.|..... +..+||||.+...-... .+++..+.| +|+.+||+|.|-.
T Consensus 26 ~n~~kNR~~~v~~~d~~R-V~l~~~~~-~~~~YInAs~v~~~~~~----~~fI~tQ~P~~~t~~dFW~mv~~~ 92 (258)
T smart00194 26 ENRDKNRYKDVLPYDHTR-VKLTPPPG-EGSDYINASYIDGPNGP----KAYIATQGPLPSTVEDFWRMVWEE 92 (258)
T ss_pred cccccCCCCCCCCCCCCE-eEccCCCC-CCCCceeeeeEecCCCc----cceEEeCCCchHHHHHHHHHHHhc
Confidence 345688888999999985 44444322 45689999888765333 345566666 7889999999975
No 238
>cd08548 Type_I_cohesin_like Type I cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I cohesins; their interactions with dockerin mediate assembly of a range of dockerin-borne enzymes to the complex.
Probab=27.33 E-value=3.5e+02 Score=25.98 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=40.7
Q ss_pred ceeeeeeeeeecCce------eEEEEEec-CCeEEEeccCCCCCCCCeeeeeccccccccccccCceEEEEecC
Q psy4897 675 QTRTFHMRCMYRGQP------SQLIVNYD-FGFRLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDFG 741 (774)
Q Consensus 675 ~~~~~~~~~~~~~~~------~~l~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~f~ 741 (774)
...+++.|-+..+-+ |++.|.|| .-|++.+.++|+.-..+.....+.++. ++-+++||.|=+
T Consensus 12 ~G~tv~VpV~~~~v~~~~i~~~~f~l~yD~s~Lev~~v~~G~i~~~~~~~~~~n~~~-----~g~i~~~~~~~~ 80 (135)
T cd08548 12 PGDTVTVPVTLSNVPSKGIGACDFVLSYDPSVLEVVSVEAGDIVKNPSANFSSNVSS-----EGTIKLLFSDST 80 (135)
T ss_pred CCCEEEEEEEEecCCccCEEEEEEEEEeCCceeEEEecccCceecCCccceEeeccC-----CCeEEEEEECCC
Confidence 456788888888755 99999999 889999988886543332333333321 344555555544
No 239
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.66 E-value=95 Score=29.65 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.1
Q ss_pred eEEEeeCChHhHHHHHHHHHH
Q psy4897 335 SCILRASDASEASLWFNTLHS 355 (774)
Q Consensus 335 ~~~Lr~~d~~~~~~W~~Ai~~ 355 (774)
.++|.+++.++...|++||..
T Consensus 101 ~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 101 RVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEEEecCCHHHHHHHHHHHhc
Confidence 467789999999999999864
No 240
>KOG1117|consensus
Probab=23.34 E-value=1.3e+02 Score=37.55 Aligned_cols=137 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCCCCCceEEEEcceeccCCCccccCC
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGR 400 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~~~~~~~~~mGWl~~~~~~~~~~~~~~ 400 (774)
.+.-|+|.. +.++++.+.+...+-..|..+.+.++... ...-+..+| ..+..-|||--+.-.+
T Consensus 143 gd~kfevit--n~r~fvfr~e~~~~r~~w~s~l~s~~~~Q-----~l~~ap~pp---~pP~raG~lelrg~ka------- 205 (1186)
T KOG1117|consen 143 GDNKFEVIT--NQRTFVFRQESEGERFIWVSPLQSALKEQ-----RLRSAPPPP---VPPPRAGWLELRGFKA------- 205 (1186)
T ss_pred cCceEEEEe--cceEEEEecCCcccceeeechhhhcchhh-----hhccCCCCC---CCCCCccchhcccccc-------
Q ss_pred CCCCCCCCCCCCcceeeecchhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeccceeEEecCCC
Q psy4897 401 ASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAP 480 (774)
Q Consensus 401 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~y~~~p 480 (774)
++|+||.+..+-||...|
T Consensus 206 --------------------------------------------------------------k~f~~vsp~~vqL~knlq 223 (1186)
T KOG1117|consen 206 --------------------------------------------------------------KLFVAVSPERVQLYKNLQ 223 (1186)
T ss_pred --------------------------------------------------------------ceeEEecCceeeeecccc
Q ss_pred CChhcccCcccccceeeEeeeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHH
Q psy4897 481 WSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQAT 546 (774)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~r~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~ 546 (774)
.-+-.-.....--.....+ ..|.-.|.+.++ ++.+-|.+|+..+...|..+.++++
T Consensus 224 ~f~lgigit~I~m~~~nvk------~vdr~sfdl~Tp----~r~fsftaese~erq~w~ea~q~si 279 (1186)
T KOG1117|consen 224 SFPLGIGITFIYMEVSNVK------EVDRRSFDLNTP----YREFSFTAESETERQIWGEAPQPSI 279 (1186)
T ss_pred cccCCceeEEEeccccccc------ccccceeccCCc----eeeeeeeeccchhhhhhhhccCccc
No 241
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.84 E-value=3.2e+02 Score=26.58 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
.++.|+|.+.++..+.+++|.+.+.=..|++.|..-+.
T Consensus 79 d~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~ 116 (133)
T cd01227 79 DTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLT 116 (133)
T ss_pred CccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 36789999988888999999999999999999876554
No 242
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.45 E-value=1.7e+02 Score=27.05 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=30.3
Q ss_pred EEEEEEeCCCCceeeEEEEecChhHHHHHHHHHH
Q psy4897 510 IVFSVRCGTPQGVATHHLRAETHRDLANWARTLV 543 (774)
Q Consensus 510 ~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~ 543 (774)
.||+|-.|+.--..+.+|-+++..+...|++.|.
T Consensus 80 ~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~ 113 (115)
T cd01248 80 RCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLR 113 (115)
T ss_pred cEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHh
Confidence 8999999976557899999999999999999874
No 243
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=22.22 E-value=1.7e+02 Score=27.28 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.6
Q ss_pred CCceEEEecCCCceeEEEeeCChHhHHHHHHHHH
Q psy4897 321 ENRTLELHSPDGVHSCILRASDASEASLWFNTLH 354 (774)
Q Consensus 321 r~r~FeL~s~dg~~~~~Lr~~d~~~~~~W~~Ai~ 354 (774)
+-+.|-|...++. ..|+.+.|.+++++|+..|.
T Consensus 73 ~~nTFvLK~~~~~-eyI~Ea~d~~q~~SWla~Ir 105 (107)
T cd01231 73 NLYTFVLKVDDNT-DIIFEVGDEQQLNSWLAELR 105 (107)
T ss_pred cccEEEEEecCCc-eEEEEcCCHHHHHHHHHHHh
Confidence 6678888887766 89999999999999998886
No 244
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=21.99 E-value=4.7e+02 Score=24.37 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=41.5
Q ss_pred ceEEEEEEeccceeEEecCCCCChhcccCcccccceeeEeeeccCCCCCc--EEEEE--EeCCCCceeeEEEEecChhHH
Q psy4897 460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV--IVFSV--RCGTPQGVATHHLRAETHRDL 535 (774)
Q Consensus 460 ~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r~~~~s~~~~~--~~f~~--~~~t~~g~~~~~~~~et~~dl 535 (774)
.-...++-||..+|+||..-. ..-.| ||..-|= =..++ .+|.. ||+|+.| .+.|++.-..++
T Consensus 19 ~~g~g~L~vt~~~L~l~~~~~-~~~~W-------Pl~~LRR----YG~d~~~FsFEAGRRC~tGeG--~f~F~t~~~~~i 84 (102)
T cd01202 19 ELGSGWLELTRTELTLYISGK-EPVVW-------PLLCLRR----YGYNSDLFSFESGRRCQTGEG--IFAFRCKRAEEL 84 (102)
T ss_pred eeeeEEEEecceEEEEEcCCC-CEEEc-------cHHHhHh----hccCCCEEEEEccCcCCCCCC--EEEEEcCCHHHH
Confidence 447889999999999997332 33333 3333330 11223 44443 5566655 488888777766
Q ss_pred HHHHHHHHHH
Q psy4897 536 ANWARTLVQA 545 (774)
Q Consensus 536 ~~w~~~l~~~ 545 (774)
-.=..+++++
T Consensus 85 f~~v~~~I~~ 94 (102)
T cd01202 85 FNLLQSYIQE 94 (102)
T ss_pred HHHHHHHHHc
Confidence 5444444443
No 245
>KOG1703|consensus
Probab=21.85 E-value=34 Score=40.00 Aligned_cols=72 Identities=29% Similarity=0.440 Sum_probs=60.7
Q ss_pred cccEEEEccCCCCCCeEEEEecCCCHHhhhCCCCCCCEEEEECCEecCCCCHHHHHHHHHhcCceEEEEeeecc
Q psy4897 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGY 106 (774)
Q Consensus 33 gLGfsI~GG~e~~~gi~Vs~V~pGSpAaraG~LqvGD~ILsVNG~~V~~~sh~eaV~lLk~ag~~V~L~V~R~~ 106 (774)
++||.+.+| +-...+-|..+.+++.++.+. +.++|.|..++|..-..+.|.++..-.+..+....+.+.|..
T Consensus 9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 80 (479)
T KOG1703|consen 9 PWGFRLQGG-DFLQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSE 80 (479)
T ss_pred Cceeeeccc-ccccccceeccCCCCcccccc-ccccccccccccccccccccccccCccccccccccccccccc
Confidence 566665554 444668899999999999986 999999999999999999999999998888888888887753
No 246
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.53 E-value=2.8e+02 Score=26.14 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=0.0
Q ss_pred Eeeec---------ccccCCCCceEEEecCCCc---eeEEEeeCChHhHHHHHHHHHHHhh
Q psy4897 310 YLVRN---------YKHYDSENRTLELHSPDGV---HSCILRASDASEASLWFNTLHSTLH 358 (774)
Q Consensus 310 ~l~R~---------~~~~d~r~r~FeL~s~dg~---~~~~Lr~~d~~~~~~W~~Ai~~ni~ 358 (774)
|++|+ ....+..+..|+|-..+.. .+++++|.+.+.=+.|++.|..-++
T Consensus 53 Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 53 YIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred EEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
No 247
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=21.03 E-value=47 Score=30.76 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=7.9
Q ss_pred EEEEecCCCc
Q psy4897 735 LLWLDFGSEE 744 (774)
Q Consensus 735 ~~~~~f~~~~ 744 (774)
-||+|||+++
T Consensus 38 dLYIDfG~KF 47 (104)
T PF10246_consen 38 DLYIDFGGKF 47 (104)
T ss_pred ceEEEeCCce
Confidence 5999999654
No 248
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.44 E-value=2.5e+02 Score=26.19 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.7
Q ss_pred ccCCCCceEEEecCCCc------eeEEEeeCChHhHHHHHHHH
Q psy4897 317 HYDSENRTLELHSPDGV------HSCILRASDASEASLWFNTL 353 (774)
Q Consensus 317 ~~d~r~r~FeL~s~dg~------~~~~Lr~~d~~~~~~W~~Ai 353 (774)
+-.+++++|+|..+|++ .++-|.|++.++..+|-.+.
T Consensus 59 gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasf 101 (110)
T cd01256 59 GFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASF 101 (110)
T ss_pred cccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHH
Confidence 34668899999999987 38899999999999996554
No 249
>PF15406 PH_6: Pleckstrin homology domain
Probab=20.44 E-value=1.8e+02 Score=27.39 Aligned_cols=67 Identities=19% Similarity=0.372 Sum_probs=47.5
Q ss_pred EEEeccceeEEecCCCCChhcccCcccccceeeEe-eeccCCCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHH
Q psy4897 465 FGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTR-LVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLV 543 (774)
Q Consensus 465 ~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~l~~~r-~~~~s~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~ 543 (774)
|..=||+-|+||.- .++=+.|....+|...- +.+ ....++.|.+ .| .-|.|-+-+..|.-.|..+|-
T Consensus 43 wAsqTGKGLLF~~K----~~dka~P~GiinLadase~~~--~g~~kF~f~~-~G-----~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 43 WASQTGKGLLFFSK----AEDKASPSGIINLADASEPEK--DGSNKFHFKI-KG-----HKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred hhhccCceEEEEec----cccccCCcceEehhhcccccc--CCCceEEEEe-CC-----ceeeeecCCHHHhccHHHHhh
Confidence 34459999999987 34556899999886542 221 1222366666 45 459999999999999998873
No 250
>KOG0248|consensus
Probab=20.41 E-value=1.9e+02 Score=35.27 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=87.5
Q ss_pred eEEEeeCChHhHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCCCCCceEEEEcceeccCCCccccCCCCCCCCCCCCCCcc
Q psy4897 335 SCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRW 414 (774)
Q Consensus 335 ~~~Lr~~d~~~~~~W~~Ai~~ni~~l~~~~~~~~n~~l~~~~~~~~~~mGWl~~~~~~~~~~~~~~~~~~~~~~~~~~~w 414 (774)
...+-..+.....+|++-++..|..++..-++.....+.+ + -=||+.+...+-
T Consensus 319 ~~~~~~~s~~lt~dw~~iL~~~iKv~~~~~~a~~~~p~~~----~--~~GwlT~vk~g~--------------------- 371 (936)
T KOG0248|consen 319 KMNFMTESERTTHDWVTILSAAIKATTLREMASRVTPIDA----S--ISGWLTRVKCGL--------------------- 371 (936)
T ss_pred eEEEeccChhhhhhhHHHHHHHHHHHhccchhhhcCCCCC----C--cCcceeeecccc---------------------
Confidence 4455566777789999999999998888877766544443 1 228987665331
Q ss_pred eeeecchhhhhhhhccCCCCCCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeccceeEEecCCCCChhcccCcccccc
Q psy4897 415 VSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFP 494 (774)
Q Consensus 415 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~y~~~p~~~~~~~~~~~~~~ 494 (774)
=+.+|++|.+.++|+|.+.-.- +|...-+
T Consensus 372 ----------------------------------------------skkv~~alv~~~~~~~k~~~d~-----rp~g~l~ 400 (936)
T KOG0248|consen 372 ----------------------------------------------SKKVFAALVNQKLMFFKNSNDL-----VPNGFLC 400 (936)
T ss_pred ----------------------------------------------ceeeeeeeeeeeeEEeeccccc-----ccccccc
Confidence 1789999999999999987743 3333333
Q ss_pred eeeEe---eecc--C----------CCCCcEEEEEEeCCCCceeeEEEEecChhHHHHHHHHHHHHHH
Q psy4897 495 LVSTR---LVSS--S----------RHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATH 547 (774)
Q Consensus 495 l~~~r---~~~~--s----------~~~~~~~f~~~~~t~~g~~~~~~~~et~~dl~~w~~~l~~~~~ 547 (774)
+.... .+.+ + ++...||-.+-+.+. | .+.|+-.-|+.|-..|--.++-|.-
T Consensus 401 ~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~l~~~~~~-~-~p~yLi~~t~e~k~~wly~l~~A~g 466 (936)
T KOG0248|consen 401 LQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDSLCVQIAN-E-DPVYLILRTSEDKEKWLYYLKSASG 466 (936)
T ss_pred hhhhhcceeeccCCchhhhhhhcCccccccCceEEeccCC-C-CCEEEEeeeccccceeeeeehhhcc
Confidence 22221 1111 0 222226665555543 3 5788999999999999888777654
No 251
>cd08966 EcFpg-like_N N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases. This family contains the N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases. It belongs to the FpgNei_N, [N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII)] domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. Es
Probab=20.31 E-value=1.1e+02 Score=28.38 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=37.8
Q ss_pred EEEEEecCCeEEEeccC--CCCCCCCeeeeeccccccccccccCceEEEEecCCCcceeEE
Q psy4897 691 QLIVNYDFGFRLLEATA--GSMGREPKILWTYPFERLRMSSDDGVKLLWLDFGSEEGEMRL 749 (774)
Q Consensus 691 ~l~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~f~~~~~~~~~ 749 (774)
.|.+++++|..|..+-. |..-..+.--+.-++.+|.+.-|||..+.|-|.. ..|.+.+
T Consensus 59 ~l~~~l~~~~~l~~HlgMtG~~~~~~~~~~~~~~~~l~l~~~~g~~l~f~D~R-~fG~~~~ 118 (120)
T cd08966 59 YLLFELDDGLVLVIHLGMTGRLLVVPPDEPPEKHDHVIFELDDGRELRFNDPR-RFGTLLL 118 (120)
T ss_pred EEEEEcCCCCEEEEECCceeEEEEeCCCCCCCCcEEEEEEeCCCCEEEEEcCC-CCcEEEE
Confidence 47778887777776531 2210000001334689999999999999999987 6777664
Done!