RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4897
(774 letters)
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 206 bits (524), Expect = 3e-61
Identities = 108/258 (41%), Positives = 154/258 (59%), Gaps = 12/258 (4%)
Query: 108 RCGTLETYVRG-------QWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISS 160
R G LE +W +V +SL ED ++++ + LN +
Sbjct: 8 RTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAP 67
Query: 161 FMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLY 220
+P+++ Q+R + V+K++ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+
Sbjct: 68 ----PQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALF 123
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWE-L 279
VGDAILSVNGEDL ATHDEAV+ALK+ GK V LEVKY++EV+PYF+ ++ + VGW+
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSP 183
Query: 280 QRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILR 339
L P SP PQ ++ +++ L++ Y+ R D E R LE+ + DG + LR
Sbjct: 184 PASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLR 243
Query: 340 ASDASEASLWFNTLHSTL 357
A D + A W + + +
Sbjct: 244 AKDEASARSWAGAIQAQI 261
Score = 100 bits (251), Expect = 6e-24
Identities = 56/70 (80%), Positives = 62/70 (88%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL ATHDEAV
Sbjct: 86 ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAV 145
Query: 89 KALKRAGKVV 98
+ALK+ GK V
Sbjct: 146 QALKKTGKEV 155
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP:
b.55.1.1
Length = 178
Score = 190 bits (484), Expect = 1e-56
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 194 GGKENKMPILISKIFKGMAADQTEQLYV----GDAILSVNGEDLREATHDEAVKAL---- 245
G + + +L + G A V + L+V+ D E +
Sbjct: 3 GRRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAE 62
Query: 246 -KRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGF-LSDSPPSPSPQSSQRADTRY 303
A + + REV+PYF+ ++ + VGW+ L P SP PQ ++ ++
Sbjct: 63 PGAAPPQLPEALLLQREVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKH 122
Query: 304 LPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTL 357
+ L++ Y+ R D E R LE+ + DG + LRA D + A W + + +
Sbjct: 123 VSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176
Score = 53.7 bits (128), Expect = 2e-08
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 40 GGKENKMPILISKIFKGMAADQTEQLYV----GDAILSVNGEDLREATHDEAVKAL---- 91
G + + +L + G A V + L+V+ D E +
Sbjct: 3 GRRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAE 62
Query: 92 -KRAGKVVELEV 102
A + +
Sbjct: 63 PGAAPPQLPEAL 74
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 157 bits (399), Expect = 2e-44
Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 52/233 (22%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E LG+++ GG + +S + +G A +++QL VGD I +VNG +L + HDE +
Sbjct: 17 EGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIIS 76
Query: 90 ALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGT 149
LK G+ V LEV + V + +V + E + + +
Sbjct: 77 LLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHD------- 129
Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFK 209
N + I +
Sbjct: 130 ---------------------------------DRNKSRPVVIT------------CVRP 144
Query: 210 GMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
G AD+ + GD +LSV+G L TH EA+ LK+ G+ L ++Y V
Sbjct: 145 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV 197
Score = 121 bits (305), Expect = 1e-31
Identities = 32/114 (28%), Positives = 54/114 (47%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
++ + K E LG+++ GG + +S + +G A +++QL VGD I +V
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG 282
NG +L + HDE + LK G+ V LEV+Y + + V L +
Sbjct: 62 NGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKE 115
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 135 bits (342), Expect = 5e-38
Identities = 65/89 (73%), Positives = 77/89 (86%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
Q+R + V+K++ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGE
Sbjct: 2 SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61
Query: 232 DLREATHDEAVKALKRAGKLVELEVKYLR 260
DL ATHDEAV+ALK+ GK V LEVKY++
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLEVKYMK 90
Score = 119 bits (301), Expect = 2e-32
Identities = 59/74 (79%), Positives = 65/74 (87%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+ GLGISIKGG+ENKMPILISKIFKG+AADQTE L+VGDAILSVNGEDL ATHDEAV
Sbjct: 13 ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAV 72
Query: 89 KALKRAGKVVELEV 102
+ALK+ GK V LEV
Sbjct: 73 QALKKTGKEVVLEV 86
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 137 bits (347), Expect = 2e-37
Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 61/237 (25%)
Query: 30 ENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
G GI ++G P LIS I A++ L +GD ++++NG ++T +
Sbjct: 16 PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE 75
Query: 86 EAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY-ISITLDENYDNST 144
EA + L+ + ++ + + + ++ K+ + I+I
Sbjct: 76 EANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITI---------- 125
Query: 145 VLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILI 204
S G + I
Sbjct: 126 ----------------------------------SSPSSRKPGDPLVIS----------- 140
Query: 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
I KG A +T L +GD +L+++ L + ++AV+ L++ LV+L+++ +
Sbjct: 141 -DIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
Score = 106 bits (265), Expect = 3e-26
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 171 VENQKRIIRVKKSENNGLGISIKGGKEN----KMPILISKIFKGMAADQTEQLYVGDAIL 226
V + + + G GI ++G P LIS I A++ L +GD ++
Sbjct: 3 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEV 275
++NG ++T +EA + L+ + ++ ++ +V +S V
Sbjct: 63 AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHV 111
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 132 bits (334), Expect = 1e-36
Identities = 43/101 (42%), Positives = 62/101 (61%)
Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
S ++ + + R + + K ++ GLGISI GGKE+ +PILIS+I G AD+
Sbjct: 12 SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG 71
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
L+VGDAIL+VNG +LR+ H EAV L + +E EV Y+
Sbjct: 72 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 112
Score = 117 bits (296), Expect = 1e-31
Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+ H EAV
Sbjct: 37 DHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVT 96
Query: 90 ALKRAGKVVELEV 102
L + +E EV
Sbjct: 97 ILSQQRGEIEFEV 109
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 127 bits (322), Expect = 4e-35
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R + + K ++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+
Sbjct: 11 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70
Query: 236 ATHDEAVKALKRAGKLVELEVKYLRE 261
H EAV L + +E EV Y+
Sbjct: 71 TKHKEAVTILSQQRGEIEFEVVYVAL 96
Score = 117 bits (296), Expect = 1e-31
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
++ GLGISI GGKE+ +PILIS+I G AD+ L+VGDAIL+VNG +LR+ H EAV
Sbjct: 18 EDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 77
Query: 89 KALKRAGKVVELEV 102
L + +E EV
Sbjct: 78 TILSQQRGEIEFEV 91
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 126 bits (319), Expect = 1e-34
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ + + R I + + + GLG +I GG E+ I IS I G AD + +L GD ILSV
Sbjct: 9 EDIPREPRRIVIHR-GSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSV 66
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
NG DLR A+H++A ALK AG+ V + +Y E F S + G
Sbjct: 67 NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSG 114
Score = 108 bits (272), Expect = 3e-28
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG +I GG E+ I IS I G AD + +L GD ILSVNG DLR A+H++A
Sbjct: 23 GSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81
Query: 90 ALKRAGKVVELEV 102
ALK AG+ V +
Sbjct: 82 ALKNAGQTVTIIA 94
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 129 bits (325), Expect = 2e-34
Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 34/214 (15%)
Query: 74 VNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYIS 133
V+ +A D L+ + +++ V VG L+ + I
Sbjct: 13 VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVG-----DLKLVINEPSRLPLFDAIRPLIP 67
Query: 134 ITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIK 193
+ YD T + + +R+ + GLG+S++
Sbjct: 68 LKHQVEYDQLTPRRS------------------------RKLKEVRLDRLHPEGLGLSVR 103
Query: 194 GGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVE 253
GG E + IS + KG AD L VGD I+ +NG + TH+E + ++ K V
Sbjct: 104 GGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVINLIR-TEKTVS 161
Query: 254 LEVKYLREVTPYFRKASIISEVGWELQRGFLSDS 287
++V+++ + K+S + W+ F+S+S
Sbjct: 162 IKVRHIGLIPV---KSSPDEPLTWQYVDQFVSES 192
Score = 102 bits (255), Expect = 4e-25
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
GLG+S++GG E + IS + KG AD L VGD I+ +NG + TH+E +
Sbjct: 93 LHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVI 151
Query: 89 KALKRAGKVVELEV 102
++ K V ++V
Sbjct: 152 NLIR-TEKTVSIKV 164
Score = 29.1 bits (65), Expect = 4.3
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 6/86 (6%)
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDS 287
V+ +A D L+ + +++ V K I L
Sbjct: 13 VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDL------KLVINEPSRLPLFDAIRPLI 66
Query: 288 PPSPSPQSSQRADTRYLPLQLCYLVR 313
P + Q R L+ L R
Sbjct: 67 PLKHQVEYDQLTPRRSRKLKEVRLDR 92
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 126 bits (318), Expect = 3e-34
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
+ + ++K N +GISI GG + + I ++F A + GD I VN
Sbjct: 15 GIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPP 289
G ++ T E K ++ V + L+ L
Sbjct: 75 GRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK------------------QLEVLFN 116
Query: 290 SPSPQSSQ 297
P +S +
Sbjct: 117 GPGIESVK 124
Score = 114 bits (286), Expect = 5e-30
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N +GISI GG + + I ++F A + GD I VNG ++ T E K
Sbjct: 29 AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAK 88
Query: 90 ALKRAGKVVELEV 102
++ V +
Sbjct: 89 MIQEVKGEVTIHY 101
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 123 bits (311), Expect = 1e-33
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
S + +K+ LGI+I G +E PI+IS + KG A++T +++GD IL++N
Sbjct: 1 SSGAIIYTVELKR-YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
L+ EA+ L+ AG+ V L++K + P
Sbjct: 60 SSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP 94
Score = 114 bits (287), Expect = 2e-30
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LGI+I G +E PI+IS + KG A++T +++GD IL++N L+ EA+
Sbjct: 14 YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIH 73
Query: 90 ALKRAGKVVELEV 102
L+ AG+ V L++
Sbjct: 74 LLQMAGETVTLKI 86
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 123 bits (311), Expect = 1e-33
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ + + R I + + + GLG +I GG+ I IS I G AD + +L GD ILSV
Sbjct: 6 EDIPREPRRIVIHR-GSTGLGFNIVGGEXG-EGIFISFILAGGPADLSGELRKGDQILSV 63
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
NG DLR A+H++A ALK AG+ V + +Y E F
Sbjct: 64 NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 101
Score = 108 bits (273), Expect = 2e-28
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG +I GG+ I IS I G AD + +L GD ILSVNG DLR A+H++A
Sbjct: 20 GSTGLGFNIVGGEXG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 78
Query: 90 ALKRAGKVVELEV 102
ALK AG+ V +
Sbjct: 79 ALKNAGQTVTIIA 91
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 121 bits (307), Expect = 3e-33
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
++ + K + GLG +I GGKE PI IS++ G AD+ L GD +LSVNG +
Sbjct: 5 SSGVVELPK-TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 234 REATHDEAVKALKRAGKLVELEVKY 258
H++AV+ LK A V+L V+
Sbjct: 64 EGEQHEKAVELLKAAQGSVKLVVRS 88
Score = 116 bits (294), Expect = 2e-31
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG +I GGKE PI IS++ G AD+ L GD +LSVNG + H++AV+
Sbjct: 14 TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVE 73
Query: 90 ALKRAGKVVELEV 102
LK A V+L V
Sbjct: 74 LLKAAQGSVKLVV 86
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 122 bits (309), Expect = 3e-33
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQ 215
S + ++++ ++K LG+++ GG E +PI + + G +
Sbjct: 9 SGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISR 68
Query: 216 TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
++ GD +L+V+G +L E + EAV LKR + L+ ++E +
Sbjct: 69 DGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGS 116
Score = 109 bits (273), Expect = 2e-28
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 30 ENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
LG+++ GG E +PI + + G + ++ GD +L+V+G +L E + E
Sbjct: 34 PGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSE 93
Query: 87 AVKALKRAGKVVELEV 102
AV LKR + L+
Sbjct: 94 AVALLKRTSSSIVLKA 109
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 135 bits (340), Expect = 4e-33
Identities = 86/333 (25%), Positives = 131/333 (39%), Gaps = 24/333 (7%)
Query: 22 YSENYKYTENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNG 76
E GLG SI GG N+ I ++KI +G AA + +L +GD IL+VN
Sbjct: 155 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Query: 77 EDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITL 136
L + H++AV ALK VV L+ + + S + +
Sbjct: 215 VGLEDVMHEDAVAALKNTYDVVYLK----VAKPSNAYLSDSYAPPDITTSYSQHLDNEIS 270
Query: 137 DENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK 196
+Y + ++ D + D +RI+ + S GLG +I GG
Sbjct: 271 HSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGST--GLGFNIVGG- 327
Query: 197 ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
E+ I IS I G AD + +L GD ILSVNG DLR A+H++A ALK AG+ V +
Sbjct: 328 EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 387
Query: 257 KYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQSSQRADTRYLPLQLCYLVRNYK 316
+Y E + S S A R P + Y+ +
Sbjct: 388 QYKPEEYS------------RFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFD 435
Query: 317 HYDSENRTLELHSPDGVHSCILRASDASEASLW 349
+ +++ + +L DA + W
Sbjct: 436 YDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWW 468
Score = 81.9 bits (201), Expect = 3e-16
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 154 TVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIF 208
V++ + E + I +++ N+GLG SI GG +N I I+KI
Sbjct: 39 IVNTDTLEAPGYVNGTEGEMEYEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKII 97
Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
G AA Q +L V D+IL VN D+RE TH AV+ALK AG +V L V + +
Sbjct: 98 PGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVME 157
Query: 269 ASIISE 274
+I
Sbjct: 158 IKLIKG 163
Score = 78.4 bits (192), Expect = 4e-15
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 30 ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 68 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127
Query: 85 DEAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 128 SAAVEALKEAGSIVRLYV 145
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 121 bits (306), Expect = 8e-33
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 166 DIPDSVENQK--RIIRVKKSENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVG 222
D+V N ++ + K+ + LGIS+ NK I I +I D++ L+ G
Sbjct: 5 SSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64
Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
D ILS++G + + EA K L + V LE+ + + R +S
Sbjct: 65 DHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112
Score = 105 bits (263), Expect = 5e-27
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 29 TENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
T + LGIS+ NK I I +I D++ L+ GD ILS++G + + EA
Sbjct: 24 TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEA 83
Query: 88 VKALKRAGKVVELEV 102
K L + V LE+
Sbjct: 84 TKLLASISEKVRLEI 98
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 121 bits (306), Expect = 8e-33
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
P + R I + K + GLG +I GG++ I +S I G AD + +L GD ILS
Sbjct: 9 PGGDAREPRKIILHK-GSTGLGFNIVGGEDG-EGIFVSFILAGGPADLSGELRRGDRILS 66
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
VNG +LR ATH++A ALKRAG+ V + +Y E F +
Sbjct: 67 VNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSG 109
Score = 106 bits (267), Expect = 1e-27
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG +I GG++ I +S I G AD + +L GD ILSVNG +LR ATH++A
Sbjct: 24 GSTGLGFNIVGGEDG-EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAA 82
Query: 90 ALKRAGKVVELEV 102
ALKRAG+ V +
Sbjct: 83 ALKRAGQSVTIVA 95
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 121 bits (306), Expect = 8e-33
Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQ 218
S RI+ + + N LGISI GG+ E I I ++ + A +T
Sbjct: 9 NFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNA 68
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
L GD IL V+G DL+ A+H EAV+A+K AG V V+ L TP
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS-TPRV 115
Score = 108 bits (271), Expect = 4e-28
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 29 TENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 79
N LGISI GG+ E I I ++ + A +T L GD IL V+G DL
Sbjct: 24 EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDL 83
Query: 80 REATHDEAVKALKRAGKVVELEV 102
+ A+H EAV+A+K AG V V
Sbjct: 84 QNASHSEAVEAIKNAGNPVVFIV 106
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 120 bits (302), Expect = 2e-32
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
+ + RI+ +KK LG +I+GGK +++ I ISK+ A + L GD +L+
Sbjct: 9 NELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLA 67
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLR 260
VN D ++ H +AV+ LK A ++ + V++
Sbjct: 68 VNDVDFQDIEHSKAVEILKTAREIS-MRVRFFS 99
Score = 105 bits (263), Expect = 4e-27
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG +I+GGK +++ I ISK+ A + L GD +L+VN D ++ H +AV+
Sbjct: 25 PGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVE 83
Query: 90 ALKRAGKVV 98
LK A ++
Sbjct: 84 ILKTAREIS 92
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 120 bits (302), Expect = 2e-32
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVG 222
Q R + + + + LGISI GG+ E I I + + A + L G
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
D I+ V+G DLR+A+H++AV+A+++AG V V+ +
Sbjct: 62 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
Score = 109 bits (275), Expect = 1e-28
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 30 ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
+ LGISI GG+ E I I + + A + L GD I+ V+G DLR
Sbjct: 14 PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 73
Query: 81 EATHDEAVKALKRAGKVVELEV 102
+A+H++AV+A+++AG V V
Sbjct: 74 DASHEQAVEAIRKAGNPVVFMV 95
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 120 bits (302), Expect = 4e-32
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 168 PDSVENQKRIIRV---KKSENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYV 221
+++ Q +R KK + LGISI GG + +PI I+ + A QT++L V
Sbjct: 15 TENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
GD I+++ G TH +AV LK A +E++V +V+
Sbjct: 75 GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116
Score = 110 bits (276), Expect = 1e-28
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 10 PTEAFFFSSRDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLY 66
TE +F S + K + LGISI GG + +PI I+ + A QT++L
Sbjct: 14 GTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLR 73
Query: 67 VGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
VGD I+++ G TH +AV LK A +E++V
Sbjct: 74 VGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQV 109
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 119 bits (301), Expect = 4e-32
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVG 222
Q R + + + + LGISI GG+ E I I + + A + L G
Sbjct: 22 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 81
Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYL 259
D I+ V+G DLR+A+H++AV+A+++AG V V+ +
Sbjct: 82 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
Score = 109 bits (274), Expect = 2e-28
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 30 ENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
+ LGISI GG+ E I I + + A + L GD I+ V+G DLR
Sbjct: 34 PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 93
Query: 81 EATHDEAVKALKRAGKVVELEV 102
+A+H++AV+A+++AG V V
Sbjct: 94 DASHEQAVEAIRKAGNPVVFMV 115
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 118 bits (298), Expect = 7e-32
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ + ++K G G SI+GG+E KM + + ++ + A + ++ VGD I+ +
Sbjct: 6 SGQDFDYFTVDMEK-GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
NGE R+ TH A++ +K G+ V L +K P
Sbjct: 65 NGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGP 100
Score = 113 bits (285), Expect = 4e-30
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
G G SI+GG+E KM + + ++ + A + ++ VGD I+ +NGE R+ TH A++
Sbjct: 20 GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79
Query: 90 ALKRAGKVVELEV 102
+K G+ V L +
Sbjct: 80 LIKSGGRRVRLLL 92
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 118 bits (298), Expect = 1e-31
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
+ ++K N +GISI GG + + I ++F A + GD I VNG +
Sbjct: 24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 83
Query: 234 REATHDEAVKALKRAGKLVELEVKYLR 260
+ T E K ++ V + L+
Sbjct: 84 KGKTKVEVAKMIQEVKGEVTIHYNKLQ 110
Score = 110 bits (277), Expect = 6e-29
Identities = 24/93 (25%), Positives = 37/93 (39%)
Query: 11 TEAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDA 70
TE +F S + N +GISI GG + + I ++F A + GD
Sbjct: 15 TENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDE 74
Query: 71 ILSVNGEDLREATHDEAVKALKRAGKVVELEVG 103
I VNG ++ T E K ++ V +
Sbjct: 75 ITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 116 bits (294), Expect = 2e-31
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+ I ++K GLG+SI G N + +S I KG AD +L GD IL VNGED
Sbjct: 3 SDTLTIGLQKKPGKGLGLSIVGK-RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 233 LREATHDEAVKALKRAGKLVELEVKYLRE 261
+R AT + LK + V LEV +
Sbjct: 62 VRNATQEAVAALLKCSLGTVTLEVGRIST 90
Score = 109 bits (275), Expect = 6e-29
Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
GLG+SI G N + +S I KG AD +L GD IL VNGED+R AT +
Sbjct: 14 PGKGLGLSIVGK-RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAA 72
Query: 90 ALKRAGKVVELEVG 103
LK + V LEVG
Sbjct: 73 LLKCSLGTVTLEVG 86
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 117 bits (295), Expect = 2e-31
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
S + + +++ G G S++GG+E M + + ++ + A+++ +
Sbjct: 9 SGVDLGTENLYFQSMDFYTVELER-GAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGK 67
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
+ +GD IL +NGE + H A++ +K G+ V L +K
Sbjct: 68 MRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLK 106
Score = 115 bits (291), Expect = 9e-31
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
G G S++GG+E M + + ++ + A+++ ++ +GD IL +NGE + H A++
Sbjct: 33 GAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIE 92
Query: 90 ALKRAGKVVELEV 102
+K G+ V L +
Sbjct: 93 LIKNGGRRVRLFL 105
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 118 bits (297), Expect = 2e-31
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQT 216
S SS + ++ + + + LG++I+GG E + I I+ + G A+ +
Sbjct: 3 SGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS 62
Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVG 276
L VGD IL VNG HDEAV+ LK + L+ L VK + + P+ R + + E
Sbjct: 63 -GLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLI-LTVKDVGRL-PHAR--TTVDETK 117
Query: 277 WELQRGFLSDSPPSPSPQS 295
W S P S
Sbjct: 118 W---------IASSSGPSS 127
Score = 100 bits (251), Expect = 3e-25
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ LG++I+GG E + I I+ + G A+ + L VGD IL VNG HDEAV+
Sbjct: 30 DGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVR 88
Query: 90 ALKRAGKVV 98
LK + ++
Sbjct: 89 LLKSSRHLI 97
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 117 bits (294), Expect = 2e-31
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGD 223
S + R + GLG SI GGK I +S+I +G AA + L VGD
Sbjct: 2 SSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
+LS+NG D+ EA HD AV L A + L ++ P
Sbjct: 62 RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGP 102
Score = 109 bits (275), Expect = 9e-29
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 30 ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
GLG SI GGK I +S+I +G AA + L VGD +LS+NG D+ EA
Sbjct: 16 SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75
Query: 84 HDEAVKALKRAGKVVELEV 102
HD AV L A + L +
Sbjct: 76 HDHAVSLLTAASPTIALLL 94
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 117 bits (295), Expect = 3e-31
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDA 224
V + + + G GI ++G P LIS I A++ L +GD
Sbjct: 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 69
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
++++NG ++T +EA + L+ + ++ ++ +V +S
Sbjct: 70 VMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115
Score = 102 bits (256), Expect = 4e-26
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 30 ENNGLGISIKGGK----ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
G GI ++G P LIS I A++ L +GD ++++NG ++T +
Sbjct: 25 PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE 84
Query: 86 EAVKALKRAGKVVELEVGVGY 106
EA + L+ + ++ + + +
Sbjct: 85 EANQLLRDSSITSKVTLEIEF 105
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 116 bits (293), Expect = 3e-31
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
S + +RV+KS LG S++GG E+ + I +SK+ +G +A++ L VGD I VN
Sbjct: 6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVN 64
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
G L T AVK L + +L + V+ +
Sbjct: 65 GLSLESTTMGSAVKVLTSSSRLH-MMVRRMGSGPSS 99
Score = 101 bits (254), Expect = 6e-26
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+ LG S++GG E+ + I +SK+ +G +A++ L VGD I VNG L T AV
Sbjct: 19 SPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAV 77
Query: 89 KALKRAGKVV 98
K L + ++
Sbjct: 78 KVLTSSSRLH 87
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 116 bits (293), Expect = 4e-31
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYV 221
+ V ++ + ++K G GI++ GG++N + I+IS + G AD L
Sbjct: 8 MEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQE 65
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
D ++ VNG + + H AV+ L+++GK+ + VK R+V
Sbjct: 66 NDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106
Score = 100 bits (252), Expect = 1e-25
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 31 NNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
G GI++ GG++N + I+IS + G AD L D ++ VNG + + H
Sbjct: 25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQENDRVVMVNGTPMEDVLH 82
Query: 85 DEAVKALKRAGKVVELEV 102
AV+ L+++GK+ + V
Sbjct: 83 SFAVQQLRKSGKIAAIVV 100
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 116 bits (292), Expect = 5e-31
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAIL 226
+ +IR+K EN G ++KGG + KMP+++S++ G AD +L GD ++
Sbjct: 9 GGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVV 68
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
+NG D+ E THD+ V +K + + E+ L +
Sbjct: 69 LINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVE 112
Score = 102 bits (255), Expect = 5e-26
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAV 88
EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E THD+ V
Sbjct: 25 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 84
Query: 89 KALKRAGKVVELEV 102
+K + + E+
Sbjct: 85 LFIKASCERHSGEL 98
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 116 bits (292), Expect = 5e-31
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 167 IPDSVENQKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYV 221
P + R + NGLGI I GGKE ++ I+KI G +A+QT +L
Sbjct: 11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
G +L NG L T++E + + E+ V+ ++
Sbjct: 71 GMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS 112
Score = 107 bits (270), Expect = 6e-28
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 27 KYTENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
NGLGI I GGKE ++ I+KI G +A+QT +L G +L NG L
Sbjct: 25 HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84
Query: 82 ATHDEAVKALKRAGKVVELEV 102
T++E + + E+ V
Sbjct: 85 KTYEEVQSIISQQSGEAEICV 105
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 115 bits (291), Expect = 6e-31
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+ I + K GLG+SI GG + + I+I ++++ AA + +L+ GD IL VNG D
Sbjct: 4 CETTIEISK-GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGID 62
Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
LR+ATHDEA+ L++ + V L + R+ PY
Sbjct: 63 LRKATHDEAINVLRQTPQRVRLTLY--RDEAPY 93
Score = 108 bits (273), Expect = 1e-28
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 30 ENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
GLG+SI GG + + I+I ++++ AA + +L+ GD IL VNG DLR+ATHDEA+
Sbjct: 13 GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAI 72
Query: 89 KALKRAGKVVELEVG 103
L++ + V L +
Sbjct: 73 NVLRQTPQRVRLTLY 87
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 115 bits (290), Expect = 7e-31
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSV 228
S + ++RVKK LGI+I+GG + P I I +G +A QL VG IL V
Sbjct: 2 SSGSSGTLVRVKK-SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEV 256
NG LR H EA + + A K + +
Sbjct: 61 NGLTLRGKEHREAARIIAEAFKTKDRDY 88
Score = 110 bits (276), Expect = 7e-29
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKENKMP-ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
LGI+I+GG + P I I +G +A QL VG IL VNG LR H EA
Sbjct: 15 SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAA 74
Query: 89 KALKRAGKVVELEV 102
+ + A K + +
Sbjct: 75 RIIAEAFKTKDRDY 88
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 116 bits (292), Expect = 8e-31
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 171 VENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
+E +R+ K + GLG +K P++IS + +G AA+Q+ + GD IL+VN
Sbjct: 5 IEPNVISVRLFKRKVGGLGFLVKERVSK-PPVIISDLIRGGAAEQSGLIQAGDIILAVND 63
Query: 231 EDLREATHDEAVKALKRAGK--LVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSP 288
L + ++D A++ L+ V L ++ T + + R P
Sbjct: 64 RPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP-KTIRVTQPLGP 122
Query: 289 PSPS 292
P+ +
Sbjct: 123 PTKA 126
Score = 108 bits (270), Expect = 7e-28
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG +K P++IS + +G AA+Q+ + GD IL+VN L + ++D A++
Sbjct: 18 KVGGLGFLVKERVSK-PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 76
Query: 90 ALKRAGKVVELEV 102
L+ + +
Sbjct: 77 VLRGIASETHVVL 89
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 115 bits (289), Expect = 1e-30
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAIL 226
+ +IR+K EN G ++KGG + KMP+++S++ G AD +L GD ++
Sbjct: 11 GGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVV 70
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVK 257
+NG D+ E THD+ V +K + + E+
Sbjct: 71 LINGRDIAEHTHDQVVLFIKASCERHSGELM 101
Score = 104 bits (261), Expect = 6e-27
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQ-TEQLYVGDAILSVNGEDLREATHDEAV 88
EN G ++KGG + KMP+++S++ G AD +L GD ++ +NG D+ E THD+ V
Sbjct: 27 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 86
Query: 89 KALKRAGKVVELEV 102
+K + + E+
Sbjct: 87 LFIKASCERHSGEL 100
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 115 bits (289), Expect = 1e-30
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLY 220
S Q + + + EN G G I +P I +I G AD+ +L
Sbjct: 4 GSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
VGD IL+VNG+ + H + VK +K AG V L + E+
Sbjct: 64 VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNS 107
Score = 105 bits (263), Expect = 4e-27
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 30 ENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
EN G G I +P I +I G AD+ +L VGD IL+VNG+ +
Sbjct: 20 ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM 79
Query: 83 THDEAVKALKRAGKVVELEV 102
H + VK +K AG V L +
Sbjct: 80 PHADIVKLIKDAGLSVTLRI 99
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 114 bits (288), Expect = 2e-30
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
S ++ + +++ +G G I GG E PILI + +AD+ +L+ GD ++ V+
Sbjct: 5 SSGYKELDVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVD 63
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
G + TH + + A + ++ + R+V
Sbjct: 64 GIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96
Score = 110 bits (276), Expect = 6e-29
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+G G I GG E PILI + +AD+ +L+ GD ++ V+G + TH +
Sbjct: 18 MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVID 77
Query: 90 ALKRAGKVVELEVGV 104
+ A + ++ + V
Sbjct: 78 LMHHAARNGQVNLTV 92
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 114 bits (288), Expect = 2e-30
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+R+ K + GLG +K +K P++IS + +G AA+Q+ + GD IL+VN L + +
Sbjct: 5 VRLFKRKVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63
Query: 238 HDEAVKALKRAGKLVELEVKYLRE 261
+D A++ L+ + +
Sbjct: 64 YDSALEVLRGIASETHVVLILRGP 87
Score = 109 bits (275), Expect = 1e-28
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG +K +K P++IS + +G AA+Q+ + GD IL+VN L + ++D A++
Sbjct: 11 KVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69
Query: 90 ALKRAGKVVELEV 102
L+ + +
Sbjct: 70 VLRGIASETHVVL 82
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 114 bits (287), Expect = 3e-30
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 171 VENQKRIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVN 229
V Q+ II + K +GLG+SI GGK+ + I+I ++++ AA + +L+ GD IL VN
Sbjct: 14 VPGQEMIIEISK-GRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN 72
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
G DLR ++H+EA+ AL++ + V L V R+ Y + S
Sbjct: 73 GVDLRNSSHEEAITALRQTPQKVRLVV--YRDEAHYRDEES 111
Score = 109 bits (275), Expect = 1e-28
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+GLG+SI GGK+ + I+I ++++ AA + +L+ GD IL VNG DLR ++H+EA+
Sbjct: 26 GRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAI 85
Query: 89 KALKRAGKVVELEV 102
AL++ + V L V
Sbjct: 86 TALRQTPQKVRLVV 99
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 113 bits (286), Expect = 3e-30
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYV 221
P +E ++ + + + + GLGISI GGK + I IS++ + A + + V
Sbjct: 9 PARIEEEELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRV 66
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
GD +L VNG L+ A H EAV+AL+ AG V++ V RE P
Sbjct: 67 GDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW--RESGPS 108
Score = 103 bits (258), Expect = 2e-26
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 30 ENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
+ GLGISI GGK + I IS++ + A + + VGD +L VNG L+ A
Sbjct: 24 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAE 82
Query: 84 HDEAVKALKRAGKVVELEV 102
H EAV+AL+ AG V++ V
Sbjct: 83 HHEAVEALRGAGTAVQMRV 101
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 113 bits (284), Expect = 5e-30
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 178 IRVKKSENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
+ + K E N G I+GG + P++I+ + G AD+ + GD +LSV+G L
Sbjct: 7 VTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRL 65
Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPY 265
TH EA+ LK+ G+ L ++ +V+
Sbjct: 66 LGTTHAEAMSILKQCGQEAALLIE--YDVSET 95
Score = 109 bits (274), Expect = 1e-28
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 30 ENNGLGISIKGG----KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
E N G I+GG + P++I+ + G AD+ + GD +LSV+G L TH
Sbjct: 12 EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA 71
Query: 86 EAVKALKRAGKVVELEV 102
EA+ LK+ G+ L +
Sbjct: 72 EAMSILKQCGQEAALLI 88
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 113 bits (284), Expect = 5e-30
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 176 RIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVN 229
++ + K+ GI I G+ I I I A +L VGD ILS+N
Sbjct: 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
G+D+R +T + +K A +ELE++ +
Sbjct: 67 GKDVRNSTEQAVIDLIKEADFKIELEIQTFDK 98
Score = 105 bits (264), Expect = 2e-27
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 29 TENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
T GI I G+ I I I A +L VGD ILS+NG+D+R +
Sbjct: 14 TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNS 73
Query: 83 THDEAVKALKRAGKVVELEV 102
T + +K A +ELE+
Sbjct: 74 TEQAVIDLIKEADFKIELEI 93
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 113 bits (284), Expect = 6e-30
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 176 RIIRVKKSENNGLGISIKGGKENK---------MPILISKIFKGMAADQTEQLYVGDAIL 226
R + ++K+ LGISI+GG I ISK+ AA + +L VG +L
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
VN + L TH EAV+ L+ G + + V E P
Sbjct: 71 EVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGP 108
Score = 102 bits (256), Expect = 4e-26
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 30 ENNGLGISIKGGKENK---------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 80
LGISI+GG I ISK+ AA + +L VG +L VN + L
Sbjct: 19 PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLL 78
Query: 81 EATHDEAVKALKRAGKVVELEVGVGYGR 108
TH EAV+ L+ G + + V G+
Sbjct: 79 GLTHGEAVQLLRSVGDTLTVLVCDGFES 106
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 112 bits (283), Expect = 7e-30
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDA 224
S + II V + NG+G+SI K ++K+ I + + KG AAD +L GD
Sbjct: 3 LGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQ 62
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
+LSV+G L + + A + + R +V LEV
Sbjct: 63 LLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
Score = 105 bits (263), Expect = 4e-27
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 31 NNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
NG+G+SI K ++K+ I + + KG AAD +L GD +LSV+G L + + A
Sbjct: 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
Query: 88 VKALKRAGKVVELEVG 103
+ + R VV LEV
Sbjct: 80 AELMTRTSSVVTLEVA 95
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 112 bits (283), Expect = 8e-30
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
P + EN+++ + + + GLG SI G K I IS + G + + L +GD I+
Sbjct: 9 PGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVE 67
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKY 258
VNG D H EAV LK + L V
Sbjct: 68 VNGVDFSNLDHKEAVNVLKSSRSLTISIVAA 98
Score = 100 bits (250), Expect = 2e-25
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ GLG SI G K I IS + G + + L +GD I+ VNG D H EAV
Sbjct: 25 GSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVN 83
Query: 90 ALKRAGKVVELEV 102
LK + + V
Sbjct: 84 VLKSSRSLTISIV 96
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 111 bits (280), Expect = 1e-29
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
++ I + + + G G I GG E PI I I AAD +L GD ++SV+G +
Sbjct: 2 MEQDIFLWR-KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 234 REATHDEAVKALKRAGK--LVELEVKYLR 260
+H V+ +++A K V L V+ R
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89
Score = 108 bits (272), Expect = 2e-28
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ G G I GG E PI I I AAD +L GD ++SV+G + +H V+
Sbjct: 11 KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQ 70
Query: 90 ALKRAGKVVELEVGVGYGR 108
+++A K + + V R
Sbjct: 71 LMQQAAKQGHVNLTVRQTR 89
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 111 bits (280), Expect = 1e-29
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILS 227
++ + + + + GLGISI GGK + I IS++ + A + + VGD +L
Sbjct: 3 EELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLE 60
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
VNG L+ A H EAV+AL+ AG V++ V RE +
Sbjct: 61 VNGVALQGAEHHEAVEALRGAGTAVQMRVWRERETS 96
Score = 103 bits (258), Expect = 1e-26
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 30 ENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
+ GLGISI GGK + I IS++ + A + + VGD +L VNG L+ A
Sbjct: 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAE 70
Query: 84 HDEAVKALKRAGKVVELEV 102
H EAV+AL+ AG V++ V
Sbjct: 71 HHEAVEALRGAGTAVQMRV 89
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 112 bits (282), Expect = 2e-29
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 157 SISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK-MPILISKIFKGMAADQ 215
S S T+ D + + K E GLG S+ GG + + I + ++F A Q
Sbjct: 2 SSGSSGATLKQLDG----IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQ 57
Query: 216 TEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
+ G+ +LS+NG+ L+ TH +A+ L++A + + + +
Sbjct: 58 EGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103
Score = 105 bits (264), Expect = 4e-27
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKENK-MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
E GLG S+ GG + + I + ++F A Q + G+ +LS+NG+ L+ TH +A+
Sbjct: 25 EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDAL 84
Query: 89 KALKRAGKVVELEV 102
L++A + + +
Sbjct: 85 AILRQAREPRQAVI 98
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 111 bits (280), Expect = 2e-29
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYV 221
S + K + V ++ LG +I GG+ + I +SKI A + L +
Sbjct: 3 SGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQI 62
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
D I+ VNG DL ATHD+AV+A K A + + ++V
Sbjct: 63 HDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106
Score = 108 bits (272), Expect = 3e-28
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 30 ENNGLGISIKGGK--------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
++ LG +I GG+ + I +SKI A + L + D I+ VNG DL
Sbjct: 17 DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76
Query: 82 ATHDEAVKALKRAGKVVELEV 102
ATHD+AV+A K A + + ++V
Sbjct: 77 ATHDQAVEAFKTAKEPIVVQV 97
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 111 bits (279), Expect = 2e-29
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 170 SVENQKRIIRVKK-SENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ R++ +++ + GLG SI+GG E+ + I +S + G A++ E L VGD IL V
Sbjct: 4 GSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRV 62
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
N + L TH EAVKALK + KLV L V ++
Sbjct: 63 NDKSLARVTHAEAVKALKGSKKLV-LSVYSAGRISG 97
Score = 105 bits (265), Expect = 2e-27
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ + GLG SI+GG E+ + I +S + G A++ E L VGD IL VN + L TH E
Sbjct: 16 RAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILRVNDKSLARVTHAE 74
Query: 87 AVKALKRAGKVVELEVGVG 105
AVKALK + K+V G
Sbjct: 75 AVKALKGSKKLVLSVYSAG 93
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 110 bits (278), Expect = 3e-29
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVG 222
+ ++ + + ++ G GI+I GG++N + I+IS + KG A+ QL
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQEN 59
Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
D + VNG + H AV+ L+++GK ++ ++ +
Sbjct: 60 DRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGW 101
Score = 101 bits (253), Expect = 8e-26
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 31 NNGLGISIKGGKEN------KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
G GI+I GG++N + I+IS + KG A+ QL D + VNG + H
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG--QLQENDRVAMVNGVSMDNVEH 75
Query: 85 DEAVKALKRAGKVVELEV 102
AV+ L+++GK ++ +
Sbjct: 76 AFAVQQLRKSGKNAKITI 93
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 110 bits (278), Expect = 5e-29
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK-----MPILISKIFKGMAA 213
SS ++ + I + + +GLG +I GG + + I +S+I + AA
Sbjct: 2 SSGSSGMNGRVDYLVTEEEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAA 60
Query: 214 DQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
+L GD ILSVNG+DL+ H +AV + AG V L V++ +V
Sbjct: 61 ALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQN 111
Score = 105 bits (264), Expect = 3e-27
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 30 ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
+GLG +I GG + + I +S+I + AA +L GD ILSVNG+DL+ H
Sbjct: 26 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85
Query: 85 DEAVKALKRAGKVVELEV 102
+AV + AG V L V
Sbjct: 86 QDAVDLFRNAGYAVSLRV 103
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 110 bits (277), Expect = 5e-29
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAIL 226
+ I + + +GLG +I GG + + I +S+I + AA +L GD IL
Sbjct: 5 LVTEEEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 63
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
SVNG+DL+ H +AV + AG V L V++ E +
Sbjct: 64 SVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLESS 100
Score = 106 bits (267), Expect = 9e-28
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 18 SRDFYSENYKYT---ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGD 69
S D+ + +GLG +I GG + + I +S+I + AA +L GD
Sbjct: 1 SMDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGD 60
Query: 70 AILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
ILSVNG+DL+ H +AV + AG V L V
Sbjct: 61 KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 111 bits (278), Expect = 5e-29
Identities = 30/113 (26%), Positives = 64/113 (56%), Gaps = 14/113 (12%)
Query: 163 DTVDIPDSVENQK-RIIRVKKSENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLY 220
T+ P+ + + R++R+KK L ++++GG ++ + +++S +++G AA++ +
Sbjct: 6 ATMFSPEQIAGKDVRLLRIKKEG--SLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVV 63
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRA----GKLVELEVK------YLREVT 263
GD I+++NG+ + + T EA AL++A G ++L V Y E+T
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELT 116
Score = 105 bits (264), Expect = 4e-27
Identities = 21/81 (25%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 27 KYTENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+ + L ++++GG ++ + +++S +++G AA++ + GD I+++NG+ + + T
Sbjct: 23 RIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLA 82
Query: 86 EAVKALKRA----GKVVELEV 102
EA AL++A G ++L V
Sbjct: 83 EAEAALQKAWNQGGDWIDLVV 103
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 109 bits (274), Expect = 1e-28
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAI 225
+ + + + G G+++ GG++ P+ + + K A + +L VGD +
Sbjct: 5 SSGQASGHFSVELVR-GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLV 63
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
L +NGE + TH +AV+ ++ G + L ++
Sbjct: 64 LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS 99
Score = 105 bits (264), Expect = 3e-27
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 30 ENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
G G+++ GG++ P+ + + K A + +L VGD +L +NGE + TH +A
Sbjct: 20 GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQA 79
Query: 88 VKALKRAGKVVELEV 102
V+ ++ G + L +
Sbjct: 80 VERIRAGGPQLHLVI 94
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 107 bits (270), Expect = 3e-28
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+ + V+ G ++KGG E+ P+ +SKI G A ++++ GD ++++NG L
Sbjct: 11 QYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL-Y 69
Query: 236 ATHDEAVKALKRAGKLVELEVKY 258
+ EA+ +K + ++++L V+
Sbjct: 70 GSRQEALILIKGSFRILKLIVRR 92
Score = 102 bits (255), Expect = 3e-26
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G ++KGG E+ P+ +SKI G A ++++ GD ++++NG L + EA+
Sbjct: 18 QGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL-YGSRQEAL 76
Query: 89 KALKRAGKVVELEV 102
+K + ++++L V
Sbjct: 77 ILIKGSFRILKLIV 90
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 107 bits (269), Expect = 4e-28
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+IIR+ K+ LG +IK ++ I++++I +G AAD++ ++VGD + VNG + +
Sbjct: 6 KIIRLVKN-REPLGATIKKDEQT-GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVED 63
Query: 236 ATHDEAVKALKRAGKLVELEVK-YLREVTP 264
+E ++ L ++ + ++ +E TP
Sbjct: 64 KRPEEIIQILAQSQGAITFKIIPGSKEETP 93
Score = 102 bits (255), Expect = 3e-26
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG +IK ++ I++++I +G AAD++ ++VGD + VNG + + +E ++
Sbjct: 13 NREPLGATIKKDEQT-GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQ 71
Query: 90 ALKRAGKVVELEVGVGY 106
L ++ + ++ G
Sbjct: 72 ILAQSQGAITFKIIPGS 88
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 107 bits (270), Expect = 5e-28
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 152 SNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGM 211
S + I+ I +I+R++K+ + LG +++ + ++IS+I KG
Sbjct: 3 SGSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD---SVIISRIVKGG 59
Query: 212 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
AA+++ L+ GD +L +NG ++R +E L + +
Sbjct: 60 AAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105
Score = 97.5 bits (243), Expect = 2e-24
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ LG +++ + ++IS+I KG AA+++ L+ GD +L +NG ++R +E
Sbjct: 35 RDIPLGATVRNEMD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFD 91
Query: 90 ALKRAGKVVELEV 102
L + +
Sbjct: 92 LLSDMHGTLTFVL 104
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 107 bits (269), Expect = 5e-28
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 178 IRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
I +++ N+GLG SI GG +N I I+KI G AA +L V D +L VN D
Sbjct: 8 IVLER-GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREVTP 264
+ E H AV+ALK AG +V L V+ +
Sbjct: 67 VSEVVHSRAVEALKEAGPVVRLVVRRRQPPPE 98
Score = 106 bits (266), Expect = 1e-27
Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 30 ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
N+GLG SI GG +N I I+KI G AA +L V D +L VN D+ E H
Sbjct: 13 GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH 72
Query: 85 DEAVKALKRAGKVVELEV 102
AV+ALK AG VV L V
Sbjct: 73 SRAVEALKEAGPVVRLVV 90
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 107 bits (269), Expect = 6e-28
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ I++ K GLG SI GG N I ++KI +G AA + +L +GD +L+V
Sbjct: 3 KIMEIKLIK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
N L E TH+EAV ALK V L+V + + Y +
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVA--KPTSMYISRHHHHH 104
Score = 103 bits (260), Expect = 9e-27
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
GLG SI GG N I ++KI +G AA + +L +GD +L+VN L E TH
Sbjct: 12 GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH 71
Query: 85 DEAVKALKRAGKVVELEVG 103
+EAV ALK V L+V
Sbjct: 72 EEAVTALKNTSDFVYLKVA 90
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 107 bits (269), Expect = 8e-28
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK-----MPILI 204
++ + S + T ++ I K GLG SI GG N+ I +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMTVVEIKLFK--GPKGLGFSIAGGVGNQHIPGDNSIYV 58
Query: 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
+KI G AA + +L VGD +L VN L E TH+EAV LK ++V L+V + T
Sbjct: 59 TKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG--KPTTI 116
Query: 265 Y 265
Y
Sbjct: 117 Y 117
Score = 103 bits (259), Expect = 2e-26
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
GLG SI GG N+ I ++KI G AA + +L VGD +L VN L E TH
Sbjct: 33 GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH 92
Query: 85 DEAVKALKRAGKVVELEVG 103
+EAV LK +VV L+VG
Sbjct: 93 EEAVAILKNTSEVVYLKVG 111
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 106 bits (267), Expect = 1e-27
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAI 225
+ + + K + GLG S+ G + ++ I + +I +G A + +L D I
Sbjct: 15 MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQI 74
Query: 226 LSVNGEDLREA-THDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
L++NG+ L + TH +A+ L++A V+L + R P + K
Sbjct: 75 LAINGQALDQTITHQQAISILQKAKDTVQLVIA--RGSLPQYYK 116
Score = 98.2 bits (245), Expect = 1e-24
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 30 ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA-THD 85
+ GLG S+ G + ++ I + +I +G A + +L D IL++NG+ L + TH
Sbjct: 30 PSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQ 89
Query: 86 EAVKALKRAGKVVELEVG 103
+A+ L++A V+L +
Sbjct: 90 QAISILQKAKDTVQLVIA 107
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 106 bits (266), Expect = 2e-27
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKEN---KMPILISK 206
++ + S + T ++ Q + I +++ +GLG SI GG + +PI +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLER-GPDGLGFSIVGGYGSPHGDLPIYVKT 59
Query: 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
+F AA + +L GD I++VNG+ L TH+EAV LKR V L V E +
Sbjct: 60 VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS 116
Score = 98.6 bits (246), Expect = 1e-24
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 30 ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+GLG SI GG + +PI + +F AA + +L GD I++VNG+ L TH+E
Sbjct: 34 GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 93
Query: 87 AVKALKRAGKVVELEV 102
AV LKR V L V
Sbjct: 94 AVAILKRTKGTVTLMV 109
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 106 bits (266), Expect = 2e-27
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
+ R ++V+K + LGISI G++ I +SK+ G A Q L GD +L
Sbjct: 13 DRPYVEEPRHVKVQKG-SEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLE 68
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
NG +LR AT +A + + + + +Y V
Sbjct: 69 FNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103
Score = 97.9 bits (244), Expect = 2e-24
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ LGISI G++ I +SK+ G A Q L GD +L NG +LR AT +A
Sbjct: 28 GSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRSATEQQARL 84
Query: 90 ALKRAGKVVELEV 102
+ + + +
Sbjct: 85 IIGQQCDTITILA 97
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 106 bits (266), Expect = 3e-27
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVG 222
DS + + + + + LGI I G I + + G AA + V
Sbjct: 9 SDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVN 68
Query: 223 DAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
D I++V+G +++ + + V+ L+ AG++V L + + +
Sbjct: 69 DKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSS 110
Score = 100 bits (250), Expect = 4e-25
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKENK-----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
+ LGI I G I + + G AA + V D I++V+G +++ +
Sbjct: 25 DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN 84
Query: 85 DEAVKALKRAGKVVELEVG 103
+ V+ L+ AG+VV L +
Sbjct: 85 HDVVEVLRNAGQVVHLTLV 103
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 106 bits (265), Expect = 4e-27
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGD 223
+S E I + S + GLG+S+KG K + + I I I G AA + +L + D
Sbjct: 19 LESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMND 78
Query: 224 AILSVNGEDLREATHDEAVKALKRAGK-------LVELEVKYLREVTP 264
+++VNGE L ++ EA++ L+R+ +++L + LR P
Sbjct: 79 QLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVI--LRRSGP 124
Score = 99.1 bits (247), Expect = 8e-25
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 29 TENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
+ + GLG+S+KG K + + I I I G AA + +L + D +++VNGE L ++
Sbjct: 34 SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN 93
Query: 85 DEAVKALKRAGKVVELEVGV 104
EA++ L+R+ + G+
Sbjct: 94 HEAMETLRRSMSMEGNIRGM 113
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 104 bits (261), Expect = 1e-26
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 169 DSVENQKRIIR-VKKSENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQ 218
D + R +R K LG I+ G E I IS++ G A T
Sbjct: 24 DILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGL 83
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
L V D +L VNG ++ + D+ + + + + V+
Sbjct: 84 LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122
Score = 98.8 bits (246), Expect = 1e-24
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 26 YKYTENNGLGISIKGGK---------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 76
KY LG I+ G E I IS++ G A T L V D +L VNG
Sbjct: 36 CKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNG 95
Query: 77 EDLREATHDEAVKALKRAGKVVELEV 102
++ + D+ + + + + V
Sbjct: 96 IEVSGKSLDQVTDMMIANSRNLIITV 121
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 103 bits (258), Expect = 1e-26
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+ V + G I GG++ PI+++K+ + A+ L GD I+++NG+
Sbjct: 6 SGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAEN 64
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTP 264
H EA ++++ + L++ R P
Sbjct: 65 MLHAEAQSKIRQSASPLRLQLD--RSSGP 91
Score = 97.4 bits (243), Expect = 1e-24
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G I GG++ PI+++K+ + A+ L GD I+++NG+ H EA
Sbjct: 13 AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQ 71
Query: 89 KALKRAGKVVELEV 102
++++ + L++
Sbjct: 72 SKIRQSASPLRLQL 85
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 104 bits (260), Expect = 2e-26
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 150 LNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGK---ENKMPILISK 206
LNS+T + S+ + +S + + GLG S++GGK P+ I++
Sbjct: 4 LNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINR 63
Query: 207 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-LVELEVK 257
IFKG A++Q+E + GD IL + G ++ T EA +K V + ++
Sbjct: 64 IFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115
Score = 99.1 bits (247), Expect = 1e-24
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 30 ENNGLGISIKGGK---ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ GLG S++GGK P+ I++IFKG A++Q+E + GD IL + G ++ T E
Sbjct: 38 MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFE 97
Query: 87 AVKALKRAGK-VVELEV 102
A +K V + +
Sbjct: 98 AWNIIKALPDGPVTIVI 114
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 103 bits (258), Expect = 2e-26
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ + K LG+S+ N++ I+ + +G + +L GD I NG+ L
Sbjct: 6 VDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
K A V +EV + +
Sbjct: 63 FQVCYALFKGANGKVSMEVTRPKPGSG 89
Score = 97.1 bits (242), Expect = 2e-24
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG+S+ N++ I+ + +G + +L GD I NG+ L
Sbjct: 12 AGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 68
Query: 90 ALKRAGKVVELEVG 103
K A V +EV
Sbjct: 69 LFKGANGKVSMEVT 82
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 101 bits (255), Expect = 3e-26
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
GLG SI GG N I I+KI +G AA + +L +GD +L+VN +L++ H
Sbjct: 12 GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH 71
Query: 85 DEAVKALKRAGKVVELEVG 103
+EAV +LK +V L+V
Sbjct: 72 EEAVASLKNTSDMVYLKVA 90
Score = 101 bits (254), Expect = 4e-26
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 178 IRVKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+ + K GLG SI GG N I I+KI +G AA + +L +GD +L+VN +
Sbjct: 7 VNLLK-GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 65
Query: 233 LREATHDEAVKALKRAGKLVELEVK 257
L++ H+EAV +LK +V L+V
Sbjct: 66 LQDVRHEEAVASLKNTSDMVYLKVA 90
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 102 bits (256), Expect = 3e-26
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGD 223
E K+ IRV+ ++ LG SI GG + + I ++++ A + L GD
Sbjct: 7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGD 64
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
I+ NG H +AV LK VEL + REV+
Sbjct: 65 KIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV--REVS 102
Score = 92.9 bits (231), Expect = 6e-23
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 30 ENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
++ LG SI GG + + I ++++ A + L GD I+ NG
Sbjct: 19 KDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 76
Query: 82 ATHDEAVKALKRAGKVVELEV 102
H +AV LK VEL +
Sbjct: 77 IEHGQAVSLLKTFQNTVELII 97
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 102 bits (256), Expect = 6e-26
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
P ++ + +++KS G G ++ GG E + I + A ++ GD I+S
Sbjct: 12 PSELKGKFIHTKLRKSSR-GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 70
Query: 228 VNGEDLREATHDEAVKALKRA--GKLVELEVK 257
VN + TH + VK + G V+LE+
Sbjct: 71 VNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 102
Score = 99.5 bits (248), Expect = 7e-25
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ G G ++ GG E + I + A ++ GD I+SVN + TH + VK
Sbjct: 28 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 87
Query: 91 LKRA--GKVVELEVGVGY 106
+ G V+LE+ GY
Sbjct: 88 FQSIPIGASVDLELCRGY 105
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 101 bits (253), Expect = 7e-26
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R+I+ +K +GI +K K +++I G + L+VGD IL +NG ++
Sbjct: 14 RLIQFEKVTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+ D+ KA+K ++ L+V
Sbjct: 72 HSVDQLQKAMKETKGMISLKV 92
Score = 92.0 bits (229), Expect = 1e-22
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+GI +K K +++I G + L+VGD IL +NG ++ + D+
Sbjct: 21 VTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQ 78
Query: 89 KALKRAGKVVELEV 102
KA+K ++ L+V
Sbjct: 79 KAMKETKGMISLKV 92
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 101 bits (253), Expect = 7e-26
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 167 IPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAIL 226
IP + +K + + K LG+S+ N++ I+ + +G + +L GD I
Sbjct: 2 IPRN-SLEKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIIT 57
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
NG+ L + K A V +EV +
Sbjct: 58 KFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAA 95
Score = 93.1 bits (232), Expect = 5e-23
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG+S+ N++ I+ + +G + +L GD I NG+ L +
Sbjct: 18 AGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYA 74
Query: 90 ALKRAGKVVELEVG 103
K A V +EV
Sbjct: 75 LFKGANGKVSMEVT 88
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 100 bits (251), Expect = 9e-26
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
V + G ++GGK+ MP+ IS+I G A Q+ QL GD +++++G + TH
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHL 63
Query: 240 EAVKALKRAGKLVELEVKYLR 260
EA +K A + L ++ +
Sbjct: 64 EAQNKIKSASYNLSLTLQKSK 84
Score = 96.2 bits (240), Expect = 3e-24
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
T G ++GGK+ MP+ IS+I G A Q+ QL GD +++++G + TH EA
Sbjct: 8 TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQ 66
Query: 89 KALKRAGKVVELEV 102
+K A + L +
Sbjct: 67 NKIKSASYNLSLTL 80
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 100 bits (251), Expect = 1e-25
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 184 ENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
GLGI+I G +K I + I K A + ++ +GD I++V+G +L+ T+
Sbjct: 13 NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQ 72
Query: 240 EAVKALKRAGKLVELEVKYLREVT 263
+AV+ L+ G+ V L + E +
Sbjct: 73 QAVEVLRHTGQTVLLTLMRRGETS 96
Score = 99.6 bits (249), Expect = 2e-25
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 30 ENNGLGISIKGGKENK----MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
GLGI+I G +K I + I K A + ++ +GD I++V+G +L+ T+
Sbjct: 13 NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQ 72
Query: 86 EAVKALKRAGKVVELEV 102
+AV+ L+ G+ V L +
Sbjct: 73 QAVEVLRHTGQTVLLTL 89
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 100 bits (252), Expect = 2e-25
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
++ +KK N G G +I GG E + + + A Q ++ GD I+
Sbjct: 13 ASQLKGTFLSTTLKK-SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVY 71
Query: 228 VNGEDLREATHDEAVKALKRA--GKLVELEVK 257
+N + TH + VK + G+ V L +
Sbjct: 72 INEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103
Score = 98.6 bits (246), Expect = 1e-24
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N G G +I GG E + + + A Q ++ GD I+ +N + TH + VK
Sbjct: 28 SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVK 87
Query: 90 ALKRA--GKVVELEVGVGY 106
+ G+ V L + GY
Sbjct: 88 LFQSVPIGQSVNLVLCRGY 106
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 99.4 bits (248), Expect = 3e-25
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 176 RIIRVKKSENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILS 227
IRV+ ++ LG SI GG + + I ++++ A + L GD I+
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQ 60
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
NG H +AV LK VEL + REV+
Sbjct: 61 ANGYSFINIEHGQAVSLLKTFQNTVELIIV--REVS 94
Score = 92.5 bits (230), Expect = 7e-23
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 30 ENNGLGISIKGG--------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
++ LG SI GG + + I ++++ A + L GD I+ NG
Sbjct: 11 KDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 68
Query: 82 ATHDEAVKALKRAGKVVELEV 102
H +AV LK VEL +
Sbjct: 69 IEHGQAVSLLKTFQNTVELII 89
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 100 bits (250), Expect = 3e-25
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAIL 226
+ + II ++K + NGLG+S+ G K+ ++M I + I A ++ +GD +L
Sbjct: 19 YADLPGELHIIELEK-DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELL 77
Query: 227 SVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
+N + L +H A +K A V+L +
Sbjct: 78 EINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVN 115
Score = 95.2 bits (237), Expect = 2e-23
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 30 ENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+ NGLG+S+ G K+ ++M I + I A ++ +GD +L +N + L +H A
Sbjct: 34 DKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNAS 93
Query: 89 KALKRAGKVVELEV 102
+K A V+L
Sbjct: 94 AIIKTAPSKVKLVF 107
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 98.5 bits (246), Expect = 4e-25
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ V + G I GG++ PI+++K+ + A L GD I+++NGE
Sbjct: 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGML 62
Query: 238 HDEAVKALKRAGKLVELEVK 257
H EA ++++ + L++
Sbjct: 63 HAEAQSKIRQSPSPLRLQLD 82
Score = 95.4 bits (238), Expect = 6e-24
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G I GG++ PI+++K+ + A L GD I+++NGE H EA ++
Sbjct: 13 PWGFRITGGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKIR 71
Query: 93 RAGKVVELEV 102
++ + L++
Sbjct: 72 QSPSPLRLQL 81
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 99.5 bits (248), Expect = 7e-25
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 147 NGTLNSNTVDSISSFMDTVDIP-DSVENQKRIIRVKKSENNGLGISIKGGKENK---MPI 202
+ + + V S I + + + V + LG+ + GGK + +
Sbjct: 8 HSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCA 67
Query: 203 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREV 262
I+K+ KG AD L GD +L NG L+ AT +E + + ++E+ R
Sbjct: 68 FITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127
Query: 263 TP 264
Sbjct: 128 PS 129
Score = 94.5 bits (235), Expect = 4e-23
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 19 RDFYSENYKYTENNGLGISIKGGKENK---MPILISKIFKGMAADQTEQLYVGDAILSVN 75
+ + LG+ + GGK + + I+K+ KG AD L GD +L N
Sbjct: 35 KRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWN 94
Query: 76 GEDLREATHDEAVKALKRAGK--VVELEV 102
G L+ AT +E + + VEL V
Sbjct: 95 GRLLQGATFEEVYNIILESKPEPQVELVV 123
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 97.8 bits (244), Expect = 8e-25
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R+++ +K+ + +GI++K + N ++++I G + L+VGD I +NG +
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60
Query: 236 ATHDEAVKALKRAGKLVELEV 256
T ++ K L+ + ++
Sbjct: 61 QTVEQLQKMLREMRGSITFKI 81
Score = 88.9 bits (221), Expect = 1e-21
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ +GI++K + N ++++I G + L+VGD I +NG + T ++ K
Sbjct: 11 TDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQK 68
Query: 90 ALKRAGKVVELEVGVGY 106
L+ + ++ Y
Sbjct: 69 MLREMRGSITFKIVPSY 85
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 98.3 bits (245), Expect = 1e-24
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 178 IRVKKSENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+ + + N LGISI G + I I I KG A ++ GD +L VN +
Sbjct: 9 VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 236 ATHDEAVKALKRAGK---LVELEV 256
++D+AV+ L+ + L V
Sbjct: 69 MSNDDAVRVLRDIVHKPGPIVLTV 92
Score = 93.3 bits (232), Expect = 6e-23
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKENK--MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
+ N LGISI G + I I I KG A ++ GD +L VN + ++D+A
Sbjct: 15 KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDA 74
Query: 88 VKALKRAGK---VVELEVG 103
V+ L+ + L V
Sbjct: 75 VRVLRDIVHKPGPIVLTVA 93
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 98.2 bits (245), Expect = 1e-24
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ + + +GLG I GGK +++ I G AD+ +L GD IL +
Sbjct: 10 TVCWGHVEEVELIN-DGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKI 66
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKA 269
G +++ T ++ + L+ G V + V
Sbjct: 67 GGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 94.7 bits (236), Expect = 2e-23
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ +GLG I GGK +++ I G AD+ +L GD IL + G +++ T ++ +
Sbjct: 24 DGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81
Query: 90 ALKRAGKVVELEVG 103
L+ G V + V
Sbjct: 82 VLRNCGNSVRMLVA 95
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 99.0 bits (246), Expect = 1e-24
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKEN------------KMPILISKIFKGMAADQT 216
S+ + I ++++ EN LG SI GG + I ++++ +G A+
Sbjct: 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEI- 79
Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGK-LVELEVKYLREVTPYFRKASIISE 274
L +GD I+ VNG D+ THD+A K L + + +V L V R+ + S++SE
Sbjct: 80 AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT--RQSLQKAVQQSMLSE 136
Score = 85.9 bits (212), Expect = 7e-20
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 30 ENNGLGISIKGGKEN------------KMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
EN LG SI GG + I ++++ +G A+ L +GD I+ VNG
Sbjct: 36 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEI-AGLQIGDKIMQVNGW 94
Query: 78 DLREATHDEAVKALKRAGK-VVELEV 102
D+ THD+A K L + + VV L V
Sbjct: 95 DMTMVTHDQARKRLTKRSEEVVRLLV 120
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 97.4 bits (243), Expect = 1e-24
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
++ G + GGK+ + P+ IS++ G A L +GD I +++GE+
Sbjct: 4 TQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNM 62
Query: 237 THDEAVKALKRAGKLVELEVK 257
TH EA +K + L V
Sbjct: 63 THLEAQNRIKGCTDNLTLTVA 83
Score = 92.8 bits (231), Expect = 6e-23
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G + GGK+ + P+ IS++ G A L +GD I +++GE+ TH EA
Sbjct: 10 QGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQ 68
Query: 89 KALKRAGKVVELEV 102
+K + L V
Sbjct: 69 NRIKGCTDNLTLTV 82
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 97.3 bits (243), Expect = 1e-24
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 178 IRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+ + K +N LGIS+ GG I + + AA+ +++ GD +L+VNG L
Sbjct: 9 VELAK-NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLE 67
Query: 235 EATHDEAVKALKRAGKLVELEVKYLREVTP 264
ATH +AV+ L+ G++V L ++ + +P
Sbjct: 68 GATHKQAVETLRNTGQVVHLLLE--KGQSP 95
Score = 97.3 bits (243), Expect = 2e-24
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 30 ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+N LGIS+ GG I + + AA+ +++ GD +L+VNG L ATH +
Sbjct: 14 NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 73
Query: 87 AVKALKRAGKVVELEVG 103
AV+ L+ G+VV L +
Sbjct: 74 AVETLRNTGQVVHLLLE 90
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 96.6 bits (241), Expect = 2e-24
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ G G ++ GG E + I + A ++ GD I+SVN + TH + VK
Sbjct: 10 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 69
Query: 91 LKRA--GKVVELEV 102
+ G V+LE+
Sbjct: 70 FQSIPIGASVDLEL 83
Score = 96.6 bits (241), Expect = 2e-24
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+++KS G G ++ GG E + I + A ++ GD I+SVN + T
Sbjct: 4 TKLRKSSR-GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 238 HDEAVKALKRA--GKLVELEVK 257
H + VK + G V+LE+
Sbjct: 63 HAQVVKIFQSIPIGASVDLELC 84
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 97.9 bits (244), Expect = 3e-24
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 157 SISSFMDTVDIPDSVEN-----QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIF 208
S SS + D ++ Q I +++ GLG S+ + K+ I + +
Sbjct: 3 SGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQ 62
Query: 209 KGMAADQTEQLYVGDAILSVNGEDLRE-ATHDEAVKALKRAGKLVELEVKYLREVTP 264
G AD+ ++L D IL++N L + +H +A+ L++ + L V T
Sbjct: 63 PGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTK 119
Score = 90.6 bits (225), Expect = 8e-22
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 30 ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE-ATHD 85
GLG S+ + K+ I + + G AD+ ++L D IL++N L + +H
Sbjct: 35 STGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQ 94
Query: 86 EAVKALKRAGKVVELEVG 103
+A+ L++ + L V
Sbjct: 95 QAIALLQQTTGSLRLIVA 112
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 95.8 bits (239), Expect = 5e-24
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
V G ++GGK+ MP+ IS + G A Q + +GD +LS++G + + T
Sbjct: 5 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMT 63
Query: 238 HDEAVKALKRAGKLVELEVK 257
H EA +K + + ++
Sbjct: 64 HLEAQNKIKGCTGSLNMTLQ 83
Score = 91.6 bits (228), Expect = 1e-22
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + + TH EA +K
Sbjct: 14 PWGFRLQGGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72
Query: 93 RAGKVVELEV 102
+ + +
Sbjct: 73 GCTGSLNMTL 82
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 95.5 bits (238), Expect = 6e-24
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+V G ++GGK+ +P+ IS++ G A Q + VGD +LS++GE+ T
Sbjct: 5 FKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLT 63
Query: 238 HDEAVKALKRAGKLVELEVK 257
H EA ++ G+ + L +
Sbjct: 64 HIEAQNKIRACGERLSLGLS 83
Score = 92.0 bits (229), Expect = 9e-23
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G ++GGK+ +P+ IS++ G A Q + VGD +LS++GE+ TH EA ++
Sbjct: 14 PWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR 72
Query: 93 RAGKVVELEV 102
G+ + L +
Sbjct: 73 ACGERLSLGL 82
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 95.5 bits (238), Expect = 9e-24
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
V G + GG + P++I++I G A L GD IL+++G T
Sbjct: 7 GNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMT 65
Query: 238 HDEAVKALKRAGKLVELEVK 257
H +A +K A + L++
Sbjct: 66 HADAQDRIKAASYQLCLKID 85
Score = 91.3 bits (227), Expect = 3e-22
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G + GG + P++I++I G A L GD IL+++G TH +A
Sbjct: 12 PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMTHADAQ 70
Query: 89 KALKRAGKVVELEV 102
+K A + L++
Sbjct: 71 DRIKAASYQLCLKI 84
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 95.1 bits (237), Expect = 1e-23
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 180 VKKSENNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
++ + + LGISI G ++ I + + G AA ++ D IL V+ +++
Sbjct: 19 FREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQ 78
Query: 235 EATHDEAVKALKRAGKLVELEVK 257
+ V+ L+ AG V L +
Sbjct: 79 GMAQSDVVEVLRNAGNPVRLLLI 101
Score = 94.0 bits (234), Expect = 3e-23
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 31 NNGLGISIKGGKEN-----KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+ LGISI G ++ I + + G AA ++ D IL V+ +++
Sbjct: 24 TSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS 83
Query: 86 EAVKALKRAGKVVELEVG 103
+ V+ L+ AG V L +
Sbjct: 84 DVVEVLRNAGNPVRLLLI 101
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 94.7 bits (236), Expect = 2e-23
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDA 224
+ +++ +GLG+ + G + I + G A +L +GD
Sbjct: 2 SSGSSGYVFTVELER-GPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDR 60
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
IL VNG L + AV ++ GK + V + +K
Sbjct: 61 ILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVA--KSDVETAKK 102
Score = 92.4 bits (230), Expect = 1e-22
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 30 ENNGLGISIKGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+GLG+ + G + I + G A +L +GD IL VNG L +
Sbjct: 17 GPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76
Query: 87 AVKALKRAGKVVELEVG 103
AV ++ GK + V
Sbjct: 77 AVDLIRHGGKKMRFLVA 93
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 93.5 bits (233), Expect = 3e-23
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
+ ++ G + GG++ P+ IS++ G A L GD I ++NGE
Sbjct: 6 SGMPHSVTLRGPS--PWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGE 62
Query: 232 DLREATHDEAVKALKRAGKLVELEVK 257
TH EA +K + L V
Sbjct: 63 STELMTHLEAQNRIKGCHDHLTLSVS 88
Score = 91.9 bits (229), Expect = 1e-22
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G + GG++ P+ IS++ G A L GD I ++NGE TH EA +K
Sbjct: 19 PWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK 77
Query: 93 RAGKVVELEV 102
+ L V
Sbjct: 78 GCHDHLTLSV 87
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 97.1 bits (242), Expect = 3e-23
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDA 224
S + I +++ N+GLG SI GG +N I I+KI G AA Q +L V D+
Sbjct: 1 SGSMEYEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 225 ILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISE 274
IL VN D+RE TH AV+ALK AG +V L V + + +I
Sbjct: 60 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG 109
Score = 91.4 bits (227), Expect = 3e-21
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 30 ENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
N+GLG SI GG +N I I+KI G AA Q +L V D+IL VN D+RE TH
Sbjct: 14 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 73
Query: 85 DEAVKALKRAGKVVELEV 102
AV+ALK AG +V L V
Sbjct: 74 SAAVEALKEAGSIVRLYV 91
Score = 89.8 bits (223), Expect = 1e-20
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH 84
GLG SI GG N+ I ++KI +G AA + +L +GD IL+VN L + H
Sbjct: 109 GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 168
Query: 85 DEAVKALKRAGKVVELEVG 103
++AV ALK VV L+V
Sbjct: 169 EDAVAALKNTYDVVYLKVA 187
Score = 89.4 bits (222), Expect = 1e-20
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 182 KSENNGLGISIKGGKENKM-----PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
GLG SI GG N+ I ++KI +G AA + +L +GD IL+VN L +
Sbjct: 107 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 166
Query: 237 THDEAVKALKRAGKLVELEVK 257
H++AV ALK +V L+V
Sbjct: 167 MHEDAVAALKNTYDVVYLKVA 187
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 93.1 bits (232), Expect = 5e-23
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 180 VKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 239
K+ LGI + ++ + I + +G A Q +L D +L++NG DL+ T +
Sbjct: 10 HKRDSGEQLGIKLVRR-TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68
Query: 240 EAVKALKRAGKLVELEVKYLREVTP 264
A + ++ +G+ V L + R P
Sbjct: 69 LAAQIIQASGERVNLTIA--RPGKP 91
Score = 90.4 bits (225), Expect = 4e-22
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+K LGI + ++ + I + +G A Q +L D +L++NG DL+ T +
Sbjct: 10 HKRDSGEQLGIKLVRR-TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68
Query: 86 EAVKALKRAGKVVELEVG 103
A + ++ +G+ V L +
Sbjct: 69 LAAQIIQASGERVNLTIA 86
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 92.9 bits (231), Expect = 8e-23
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILS 227
S + R + ++K GLG+++ +I+ + G A+++ L +GD + +
Sbjct: 5 SSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTA 64
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLR 260
+NG L A++ + + +
Sbjct: 65 INGTSLVGLPLAACQAAVRETKSQTSVTLSIVH 97
Score = 82.5 bits (204), Expect = 3e-19
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 30 ENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
GLG+++ +I+ + G A+++ L +GD + ++NG L
Sbjct: 19 RGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAAC 78
Query: 88 VKALKRAGKVVELEVGV 104
A++ + + +
Sbjct: 79 QAAVRETKSQTSVTLSI 95
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 92.4 bits (230), Expect = 1e-22
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 186 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 245
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + TH EA +
Sbjct: 15 APWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKI 73
Query: 246 KRAGKLVELEVKYLREVTP 264
K + + ++
Sbjct: 74 KACTGSLNMTLQRASAAAK 92
Score = 91.3 bits (227), Expect = 2e-22
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
G ++GGK+ MP+ IS + G A Q + +GD +LS++G + TH EA +
Sbjct: 15 APWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKI 73
Query: 92 KRAGKVVELEV 102
K + + +
Sbjct: 74 KACTGSLNMTL 84
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 91.7 bits (228), Expect = 2e-22
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 163 DTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLY 220
+ P + R+I V K GLG+ I GG + I ++ G + +L
Sbjct: 4 GSSGSPLDRDPAFRVITVTKET--GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLK 61
Query: 221 VGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
GD ++S+N E + + +EA + RA E +
Sbjct: 62 PGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWE 98
Score = 90.6 bits (225), Expect = 6e-22
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 29 TENNGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
T+ GLG+ I GG + I ++ G + +L GD ++S+N E + + +E
Sbjct: 22 TKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEE 81
Query: 87 AVKALKRAGKVVELEVGVGYGRCG 110
A + RA E + + R G
Sbjct: 82 AKSIITRAKLRSESPWEIAFIRSG 105
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 94.6 bits (235), Expect = 3e-22
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 159 SSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ 218
+ TV D E +K + + K LG+S+ N++ I+ + +G + +
Sbjct: 98 KAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSK 154
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
L GD I NG+ L K A V +EV
Sbjct: 155 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEV 192
Score = 87.6 bits (217), Expect = 7e-20
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
LG+S+ N++ I+ + +G + +L GD I NG+ L
Sbjct: 122 KAGKELGLSLSP---NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCY 178
Query: 89 KALKRAGKVVELEVG 103
K A V +EV
Sbjct: 179 ALFKGANGKVSMEVT 193
Score = 78.8 bits (194), Expect = 9e-17
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
N+K +I +K E +G+ + GGK N +I+ ++ ++L + D I +NG
Sbjct: 17 NKKILIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDING 75
Query: 231 EDLREA--THDEAVKALKRAGKLVELEVKYLREVTPYF 266
+ T + + + + +
Sbjct: 76 TPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELE 113
Score = 74.5 bits (183), Expect = 2e-15
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 30 ENNGLGISIKGGKEN--KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA--THD 85
E +G+ + GGK N +I+ ++ ++L + D I +NG + T
Sbjct: 27 EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL 86
Query: 86 EAVKALKRAGKVVE 99
+ + +
Sbjct: 87 KVHQLFHTTYEKAV 100
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 91.8 bits (228), Expect = 3e-22
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 152 SNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGM 211
+ S + + + + + VK + + +G+ + GG + + I ++ + +
Sbjct: 5 HHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDS 62
Query: 212 AADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRA--GKLVELEVKYLREV 262
A + E L GD IL VN D +EAV L G+ V + + ++V
Sbjct: 63 PAAK-EGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 114
Score = 87.2 bits (216), Expect = 1e-20
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 9 GPTEAFFFSSRDFYSENYKYTE---NNGLGISIKGGKENKMPILISKIFKGMAADQTEQL 65
G TE +F + K + + +G+ + GG + + I ++ + + A + E L
Sbjct: 13 GGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAK-EGL 69
Query: 66 YVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGR 108
GD IL VN D +EAV L K E+ + +
Sbjct: 70 EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 90.6 bits (225), Expect = 4e-22
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
S++ ++ + V KSE+ LG++I I +I G D + + VGD I S+N
Sbjct: 1 SMKGIEKEVNVYKSED-SLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESIN 57
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYF 266
GE++ H + K LK K +K +
Sbjct: 58 GENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKSSE 94
Score = 80.9 bits (200), Expect = 8e-19
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ LG++I I +I G D + + VGD I S+NGE++ H + K
Sbjct: 14 SEDSLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAK 71
Query: 90 ALK--RAGKVVELEV 102
LK + ++ +++
Sbjct: 72 KLKELKKEELFTMKL 86
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 90.9 bits (226), Expect = 4e-22
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILS 227
+ +I+ + K GLG SI ++ + I+I + A+++ L GD ++S
Sbjct: 13 SPEVKIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVS 71
Query: 228 VNGEDLREATHDEAVKALKRAGK-LVELEVKY 258
VN L + EAV+ LK LV L +
Sbjct: 72 VNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
Score = 89.4 bits (222), Expect = 1e-21
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 30 ENNGLGISIKGGKE----NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+ GLG SI ++ + I+I + A+++ L GD ++SVN L +
Sbjct: 24 DCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLA 83
Query: 86 EAVKALKRAGK-VVELEV 102
EAV+ LK +V L +
Sbjct: 84 EAVEILKAVPPGLVHLGI 101
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 88.5 bits (220), Expect = 3e-21
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSV 228
++ I++KK GLG SI PI + I AA Q +L GD ++ V
Sbjct: 9 VGKRLNIQLKK-GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPY 265
NG DL + +E V L+ + + R+ +
Sbjct: 68 NGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF 104
Score = 85.1 bits (211), Expect = 4e-20
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
GLG SI PI + I AA Q +L GD ++ VNG DL + +E
Sbjct: 20 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEE 79
Query: 87 AVKALKRAGK--VVELEVG 103
V L+ V L V
Sbjct: 80 VVSLLRSTKMEGTVSLLVF 98
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 87.8 bits (218), Expect = 5e-21
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 184 ENNGLGISI-----KGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+N LGIS+ KGG I + + AA+ +++ GD +L+VNG L
Sbjct: 18 NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRK 268
ATH +AV+ L+ G++V L ++ + +P ++
Sbjct: 78 ATHKQAVETLRNTGQVVHLLLE--KGQSPTSKE 108
Score = 87.8 bits (218), Expect = 5e-21
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 30 ENNGLGISI-----KGGKEN---KMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
+N LGIS+ KGG I + + AA+ +++ GD +L+VNG L
Sbjct: 18 NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77
Query: 82 ATHDEAVKALKRAGKVVELEVG 103
ATH +AV+ L+ G+VV L +
Sbjct: 78 ATHKQAVETLRNTGQVVHLLLE 99
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 87.8 bits (218), Expect = 5e-21
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 30 ENNGLGISIKGG------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
+ +GLGISI G K+ I + + +G AA + ++ V D I+ V+G L T
Sbjct: 18 DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77
Query: 84 HDEAVKALKRAGKVVELEVG 103
+ A L+ V +G
Sbjct: 78 QNFAATVLRNTKGNVRFVIG 97
Score = 87.0 bits (216), Expect = 8e-21
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 184 ENNGLGISIKGG------KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ +GLGISI G K+ I + + +G AA + ++ V D I+ V+G L T
Sbjct: 18 DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTP 264
+ A L+ V + + P
Sbjct: 78 QNFAATVLRNTKGNVRFVIGREKPSGP 104
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 86.7 bits (215), Expect = 2e-20
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 30 ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
++ GLGISI G K+ I + + +G AA + ++ V D ++ V+G L T
Sbjct: 13 DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72
Query: 84 HDEAVKALKRAGKVVELEVG 103
A L+ V +G
Sbjct: 73 QSFAASVLRNTKGRVRFMIG 92
Score = 85.9 bits (213), Expect = 3e-20
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 184 ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
++ GLGISI G K+ I + + +G AA + ++ V D ++ V+G L T
Sbjct: 13 DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72
Query: 238 HDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISE 274
A L+ V + A +I +
Sbjct: 73 QSFAASVLRNTKGRVRFMIGR-ERPGEQSEVAQLIQQ 108
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 86.0 bits (213), Expect = 2e-20
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 172 ENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 231
++ R IR E LG +++G P+ + + +A GD I+S+
Sbjct: 21 QSMPRSIRFTAEEG-DLGFTLRGNA----PVQVHFLDPYCSASV-AGAREGDYIVSIQLV 74
Query: 232 DLREATHDEAVKALKRAGK-LVELEVKYLREVTPY 265
D + T E +K LK G+ +E++V L + +
Sbjct: 75 DCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVTF 109
Score = 77.5 bits (191), Expect = 2e-17
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E LG +++G P+ + + +A GD I+S+ D + T E +K
Sbjct: 32 EEGDLGFTLRGNA----PVQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMK 86
Query: 90 ALKRAGK-VVELEV 102
LK G+ +E++V
Sbjct: 87 LLKSFGEDEIEMKV 100
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 85.6 bits (212), Expect = 3e-20
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYV 221
D +Q++++ V+K +N G I+ + ++M LI KI + A L
Sbjct: 10 DFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCA-GLQA 68
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
GD + ++NG T+ + V ++ +G L+ +E
Sbjct: 69 GDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 76.0 bits (187), Expect = 6e-17
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 29 TENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
+N G I+ + ++M LI KI + A L GD + ++NG
Sbjct: 24 QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCA-GLQAGDVLANINGVSTEG 82
Query: 82 ATHDEAVKALKRAGKVVELEV 102
T+ + V ++ +G ++ +E
Sbjct: 83 FTYKQVVDLIRSSGNLLTIET 103
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 84.7 bits (210), Expect = 4e-20
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
S + R++ +KK +NG G ++ G E + +I I G A+ L D +++VN
Sbjct: 2 SSGSSGRVVVIKK-GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVN 58
Query: 230 GEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
G+ + HD V+ +++ G L V +E + + S
Sbjct: 59 GKSVEALDHDGVVEMIRKGGDQTTLLVLD-KEAESIYSLSGPSS 101
Score = 76.6 bits (189), Expect = 4e-17
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+NG G ++ G E + +I I G A+ L D +++VNG+ + HD V+
Sbjct: 15 GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVE 72
Query: 90 ALKRAGKVVELEV 102
+++ G L V
Sbjct: 73 MIRKGGDQTTLLV 85
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 84.4 bits (209), Expect = 5e-20
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R++ ++K+ LG++ + ++I++I G Q L+VGD I VNG+ +
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEGG---ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS 64
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+ L+ A V L++
Sbjct: 65 -DPRALQELLRNASGSVILKI 84
Score = 74.8 bits (184), Expect = 1e-16
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG++ + ++I++I G Q L+VGD I VNG+ + +
Sbjct: 16 AGEHLGVTFRVEGG---ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQE 71
Query: 90 ALKRAGKVVELEV 102
L+ A V L++
Sbjct: 72 LLRNASGSVILKI 84
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 84.3 bits (209), Expect = 8e-20
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 176 RIIRVKKSENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGD 223
R++R+ KSE+ G G +++G +S + G AAD+ + GD
Sbjct: 8 RVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGD 65
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
IL VNG ++ ATH + V ++ K + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 81.6 bits (202), Expect = 8e-19
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 30 ENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
+G G +++G +S + G AAD+ + GD IL VNG
Sbjct: 15 SESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGV 73
Query: 78 DLREATHDEAVKALKRAGKVVELEV 102
++ ATH + V ++ K + L V
Sbjct: 74 NVEGATHKQVVDLIRAGEKELILTV 98
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 84.8 bits (210), Expect = 9e-20
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNG 230
++ I++KK GLG SI PI + I AA Q +L GD ++ VNG
Sbjct: 30 KRLNIQLKK-GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 88
Query: 231 EDLREATHDEAVKALKRAGKLVELEVKYLRE 261
DL + +E V L+ + + R+
Sbjct: 89 VDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Score = 84.0 bits (208), Expect = 1e-19
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 30 ENNGLGISIKGGKE---NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
GLG SI PI + I AA Q +L GD ++ VNG DL + +E
Sbjct: 39 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98
Query: 87 AVKALKRAGK--VVELEVG 103
V L+ V L V
Sbjct: 99 VVSLLRSTKMEGTVSLLVF 117
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 83.5 bits (207), Expect = 1e-19
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
Q R++ +KK +NG G ++ G E + +I I G A+ L D +++VNG+ +
Sbjct: 5 QPRVVVIKKG-SNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSV 61
Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPY 265
HD V+ +++ G L V P+
Sbjct: 62 EALDHDGVVEMIRKGGDQTTLLVLDKELERPH 93
Score = 75.4 bits (186), Expect = 8e-17
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+NG G ++ G E + +I I G A+ L D +++VNG+ + HD V+
Sbjct: 14 GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVE 71
Query: 90 ALKRAGKVVELEV 102
+++ G L V
Sbjct: 72 MIRKGGDQTTLLV 84
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 86.2 bits (213), Expect = 1e-19
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 30 ENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
++ GLGISI G K+ I + + +G AA + ++ V D ++ V+G L T
Sbjct: 89 DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148
Query: 84 HDEAVKALKRAGKVVELEVG 103
A L+ V +G
Sbjct: 149 QSFAASVLRNTKGRVRFMIG 168
Score = 85.0 bits (210), Expect = 3e-19
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGGK------ENKMPILISKIFKGMAADQTEQL 219
++ VE + + ++ GLGISI G K+ I + + +G AA + ++
Sbjct: 71 ELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRI 130
Query: 220 YVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
V D ++ V+G L T A L+ V +
Sbjct: 131 QVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIG 168
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 83.2 bits (206), Expect = 2e-19
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
Q R+ + K E G S+K + K + ++ I A + + D ++ V
Sbjct: 3 SGSSGQPRLCYLVK-EGGSYGFSLKTVQ-GKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIIS 273
NGE++ +A+H+E V+ +K++G V + + + S S
Sbjct: 60 NGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPS 104
Score = 76.7 bits (189), Expect = 4e-17
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E G S+K + K + ++ I A + + D ++ VNGE++ +A+H+E V+
Sbjct: 17 EGGSYGFSLKTVQ-GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVE 74
Query: 90 ALKRAGKVVELEV 102
+K++G V +
Sbjct: 75 KVKKSGSRVMFLL 87
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 82.0 bits (203), Expect = 3e-19
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 181 KKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 240
K S G S+ G + + + I D L D +L VN R+
Sbjct: 14 KDSGMEDFGFSVADGL-LEKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCCL 71
Query: 241 AVKALKRAGKLVELEVKY 258
V + +G ++L +
Sbjct: 72 VVPLIAESGNKLDLVISR 89
Score = 80.9 bits (200), Expect = 8e-19
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
YK + G S+ G + + + I D L D +L VN R+
Sbjct: 13 YKDSGMEDFGFSVADGL-LEKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCC 70
Query: 86 EAVKALKRAGKVVELEV 102
V + +G ++L +
Sbjct: 71 LVVPLIAESGNKLDLVI 87
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 81.2 bits (201), Expect = 6e-19
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R+ ++K N G G + G K + I + G A++ L GD ++ VNGE++ +
Sbjct: 5 RLCCLEKGPN-GYGFHLHGEKGK-LGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEK 61
Query: 236 ATHDEAVKALKRAGKLVELEV 256
TH + V ++ A V L V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
Score = 77.7 bits (192), Expect = 1e-17
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
NG G + G K + I + G A++ L GD ++ VNGE++ + TH + V
Sbjct: 13 PNGYGFHLHGEKGK-LGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSR 70
Query: 91 LKRAGKVVELEV 102
++ A V L V
Sbjct: 71 IRAALNAVRLLV 82
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 80.9 bits (200), Expect = 8e-19
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAI 225
Q++++ ++K +N G I+ +M ++++ + A L GD I
Sbjct: 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDTI 61
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEV 256
SVNG ++ H E V +K +G ++ LE
Sbjct: 62 ASVNGLNVEGIRHREIVDIIKASGNVLRLET 92
Score = 71.3 bits (175), Expect = 2e-15
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 29 TENNGLGISIKGGK-------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 81
+N G I+ +M ++++ + A L GD I SVNG ++
Sbjct: 13 GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDTIASVNGLNVEG 71
Query: 82 ATHDEAVKALKRAGKVVELEV 102
H E V +K +G V+ LE
Sbjct: 72 IRHREIVDIIKASGNVLRLET 92
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 80.5 bits (199), Expect = 1e-18
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ R+ +KK + G G ++ K +K I + A+ + L D I+ V
Sbjct: 4 PFTMLRPRLCTMKKGPS-GYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFR 267
NG + H + V A++ G +L V RE +F+
Sbjct: 61 NGVCMEGKQHGDVVSAIRAGGDETKLLVVD-RETDEFFK 98
Score = 73.5 bits (181), Expect = 4e-16
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+G G ++ K +K I + A+ + L D I+ VNG + H + V
Sbjct: 18 GPSGYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 ALKRAGKVVELEV 102
A++ G +L V
Sbjct: 76 AIRAGGDETKLLV 88
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 81.1 bits (200), Expect = 2e-18
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 12/128 (9%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ R+ +KK + G G ++ K +K I + A+ + L D I+ V
Sbjct: 4 PFTMLRPRLCTMKKGPS-GYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSP 288
NG + H + V A++ G +L V RE +F+K +I +
Sbjct: 61 NGVCMEGKQHGDVVSAIRAGGDETKLLVVD-RETDEFFKKCRVIPSQE--------HLNG 111
Query: 289 PSPSPQSS 296
P P P ++
Sbjct: 112 PLPVPFTN 119
Score = 70.7 bits (173), Expect = 8e-15
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+G G ++ K +K I + A+ + L D I+ VNG + H + V
Sbjct: 18 GPSGYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 ALKRAGKVVELEV 102
A++ G +L V
Sbjct: 76 AIRAGGDETKLLV 88
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 80.6 bits (199), Expect = 2e-18
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
+ R ++ K E G ++ K + LI I +G A++ L GD +L
Sbjct: 7 GMASTFNPRECKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLR 64
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEV 256
+NG + + H + V+ ++++G V L V
Sbjct: 65 INGVFVDKEEHAQVVELVRKSGNSVTLLV 93
Score = 73.3 bits (180), Expect = 6e-16
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E G ++ K + LI I +G A++ L GD +L +NG + + H + V+
Sbjct: 23 EGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVE 80
Query: 90 ALKRAGKVVELEV 102
++++G V L V
Sbjct: 81 LVRKSGNSVTLLV 93
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 80.7 bits (199), Expect = 3e-18
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 148 GTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKI 207
G+ S+ + + S N+ ++ N GLG+ + + IS +
Sbjct: 1 GSSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVG-NLGLGLVVIQNGP---YLQISHL 56
Query: 208 FKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--RAGKLVELEVK 257
AA L GD ++SV ++ T E +K L+ G +++++
Sbjct: 57 INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108
Score = 78.4 bits (193), Expect = 1e-17
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
N GLG+ + + IS + AA L GD ++SV ++ T E +K
Sbjct: 36 GNLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLK 92
Query: 90 ALK--RAGKVVELEVGVGYG 107
L+ G V++++ G+
Sbjct: 93 LLQNITIGTVLQIKAYRGFL 112
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 78.8 bits (195), Expect = 3e-18
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R + V + G G ++ G P ++S + +G AD L GD IL+VN ++++
Sbjct: 4 RSVEVARGRA-GYGFTLSGQA----PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKK 57
Query: 236 ATHDEAVKALKRAGKLVELEV 256
A+H++ VK + + ++ + +
Sbjct: 58 ASHEDVVKLIGKCSGVLHMVI 78
Score = 75.7 bits (187), Expect = 4e-17
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
G G ++ G P ++S + +G AD L GD IL+VN ++++A+H++ VK
Sbjct: 12 RAGYGFTLSGQA----PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKL 66
Query: 91 LKRAGKVVELEVGVGYG 107
+ + V+ + + G G
Sbjct: 67 IGKCSGVLHMVIAEGVG 83
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 81.8 bits (202), Expect = 3e-18
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R + + K ++ +G+ +K I + + A L GD +L +NGE+
Sbjct: 6 REVILCKDQDGKIGLRLKSIDN---GIFVQLVQANSPASLV-GLRFGDQVLQINGENCAG 61
Query: 236 ATHDEAVKALKRA-GKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSD 286
+ D+A K LK+A G+ + + ++ VG+ + G ++
Sbjct: 62 WSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS 113
Score = 70.6 bits (173), Expect = 2e-14
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++ +G+ +K I + + A L GD +L +NGE+ + D+A K
Sbjct: 14 QDGKIGLRLKSIDN---GIFVQLVQANSPASLV-GLRFGDQVLQINGENCAGWSSDKAHK 69
Query: 90 ALKRA-GKVVELEV 102
LK+A G+ + + +
Sbjct: 70 VLKQAFGEKITMTI 83
Score = 50.2 bits (120), Expect = 2e-07
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+R I + K +G K GK I+ I K +A + L I +NG++
Sbjct: 87 PFERTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNGLL-TEHNICEINGQN 138
Query: 233 LREATHDEAVKALKRAGKLVELEV 256
+ + L +G +V + +
Sbjct: 139 VIGLKDSQIADILSTSGTVVTITI 162
Score = 47.1 bits (112), Expect = 3e-06
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 26 YKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHD 85
+G K GK I+ I K +A + L I +NG+++
Sbjct: 94 MHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDS 145
Query: 86 EAVKALKRAGKVVELEV 102
+ L +G VV + +
Sbjct: 146 QIADILSTSGTVVTITI 162
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 79.3 bits (196), Expect = 4e-18
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 169 DSVENQKRIIRVKK-SENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
+ +++ K + G I +P+ + + G +A +L+ GD IL
Sbjct: 3 SGSSGVRHTVKIDKDTLLQDYGFHISES----LPLTVVAVTAGGSAHG--KLFPGDQILQ 56
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVK 257
+N E + + + AV L+ A + + V
Sbjct: 57 MNNEPAEDLSWERAVDILREAEDSLSITVV 86
Score = 77.4 bits (191), Expect = 2e-17
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 17 SSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNG 76
S + K T G I +P+ + + G +A +L+ GD IL +N
Sbjct: 6 SGVRHTVKIDKDTLLQDYGFHISES----LPLTVVAVTAGGSAHG--KLFPGDQILQMNN 59
Query: 77 EDLREATHDEAVKALKRAGKVVELEV 102
E + + + AV L+ A + + V
Sbjct: 60 EPAEDLSWERAVDILREAEDSLSITV 85
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 78.2 bits (193), Expect = 6e-18
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 175 KRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
++ VK ++N G+ + I + +I + A + + GD +L +NG
Sbjct: 4 TKVTLVKSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTE 57
Query: 235 EATHDEAVKALKRAGKLVELEVK 257
+ +A ++R+ +++ V+
Sbjct: 58 NMSLTDAKTLIERSKGKLKMVVQ 80
Score = 75.5 bits (186), Expect = 6e-17
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
K +N G+ + I + +I + A + + GD +L +NG + +
Sbjct: 10 KSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63
Query: 87 AVKALKRAGKVVELEV 102
A ++R+ +++ V
Sbjct: 64 AKTLIERSKGKLKMVV 79
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 78.2 bits (193), Expect = 7e-18
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
I ++ G +IK I ++ + G A+ + QL V D I+++N
Sbjct: 8 SINQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEFS-QLQVDDEIIAINNTKFSYN 63
Query: 237 THDEAVKALKRAGKLVELEVKYLR 260
E +A+ +A + L + R
Sbjct: 64 DSKEWEEAMAKAQETGHLVMDVRR 87
Score = 74.0 bits (182), Expect = 2e-16
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
++ G +IK I ++ + G A+ + QL V D I+++N E +
Sbjct: 15 KSLDFGFTIKWDIP---GIFVASVEAGSPAEFS-QLQVDDEIIAINNTKFSYNDSKEWEE 70
Query: 90 ALKRAGKVVELEVGVG-YGR 108
A+ +A + L + V YG+
Sbjct: 71 AMAKAQETGHLVMDVRRYGK 90
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 78.3 bits (193), Expect = 1e-17
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R ++ K E G ++ K + LI I +G A++ L GD +L +NG + +
Sbjct: 3 RESKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDK 60
Query: 236 ATHDEAVKALKRAGKLVELEV 256
H + V+ ++++G V L V
Sbjct: 61 EEHAQVVELVRKSGNSVTLLV 81
Score = 71.3 bits (175), Expect = 3e-15
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E G ++ K + LI I +G A++ L GD +L +NG + + H + V+
Sbjct: 11 EGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVE 68
Query: 90 ALKRAGKVVELEV 102
++++G V L V
Sbjct: 69 LVRKSGNSVTLLV 81
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 77.4 bits (191), Expect = 1e-17
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 177 IIRVK-KSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
+I V ++ G I + ++ + A + L+ GD IL +NG
Sbjct: 1 MIGVLLMKSRANEEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTEN 56
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTP 264
+ +A K ++++ ++L V LR++
Sbjct: 57 MSLTDARKLIEKSRGKLQLVV--LRDLEH 83
Score = 75.4 bits (186), Expect = 5e-17
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
++ G I + ++ + A + L+ GD IL +NG + +A K
Sbjct: 10 RANEEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKL 65
Query: 91 LKRAGKVVELEV 102
++++ ++L V
Sbjct: 66 IEKSRGKLQLVV 77
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 76.9 bits (190), Expect = 2e-17
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
++ VK +N G+ + I + +I + A + + GD +L +NG
Sbjct: 3 KVTLVKSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 56
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+ +A ++R+ +++ V
Sbjct: 57 MSLTDAKTLIERSKGKLKMVV 77
Score = 73.5 bits (181), Expect = 3e-16
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 27 KYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
K +N G+ + I + +I + A + + GD +L +NG + +
Sbjct: 8 KSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 61
Query: 87 AVKALKRAGKVVELEV 102
A ++R+ +++ V
Sbjct: 62 AKTLIERSKGKLKMVV 77
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 76.9 bits (190), Expect = 2e-17
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
++ R+ K EN G G + + I ++ KG AD L D I+ VNG ++ +
Sbjct: 5 KLCRLAKGEN-GYGFHLNAIR-GLPGSFIKEVQKGGPADLA-GLEDEDVIIEVNGVNVLD 61
Query: 236 ATHDEAVKALKRAGKLVELEV 256
+++ V ++ +GK V L V
Sbjct: 62 EPYEKVVDRIQSSGKNVTLLV 82
Score = 73.1 bits (180), Expect = 4e-16
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
NG G + + I ++ KG AD L D I+ VNG ++ + +++ V
Sbjct: 12 GENGYGFHLNAIR-GLPGSFIKEVQKGGPADLA-GLEDEDVIIEVNGVNVLDEPYEKVVD 69
Query: 90 ALKRAGKVVELEV 102
++ +GK V L V
Sbjct: 70 RIQSSGKNVTLLV 82
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 77.6 bits (191), Expect = 2e-17
Identities = 17/100 (17%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 174 QKRIIRVKKSENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYV 221
+++ + ++K ++ G G ++G K + + +G A + L +
Sbjct: 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRM 65
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
GD ++ VNG+++ + H + V +++ G + ++V +
Sbjct: 66 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105
Score = 69.5 bits (170), Expect = 1e-14
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 30 ENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
++ G G ++G K + + +G A + L +GD ++ VNG+
Sbjct: 17 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQ 75
Query: 78 DLREATHDEAVKALKRAGKVVELEV 102
++ + H + V +++ G + ++V
Sbjct: 76 NVVKVGHRQVVNMIRQGGNTLMVKV 100
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 76.6 bits (189), Expect = 3e-17
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
+ R I + + ++ G G +I P+ + + G A++ L D +L +N +
Sbjct: 3 RYRQITIPRGKD-GFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQLNERPV 56
Query: 234 REATHDEAVKALKRAGKLVELEV 256
E ++ + L V
Sbjct: 57 EHWKCVELAHEIRSCPSEIILLV 79
Score = 72.4 bits (178), Expect = 7e-16
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+G G +I P+ + + G A++ L D +L +N + E
Sbjct: 12 GKDGFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAH 66
Query: 90 ALKRAGKVVELEVG 103
++ + L V
Sbjct: 67 EIRSCPSEIILLVW 80
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 75.8 bits (187), Expect = 6e-17
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 176 RIIRVKKSENNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
R + ++K G G ++ K + + ++ G+ A + + GD +++V GE +
Sbjct: 5 RCLHLEKGPQ-GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESV 62
Query: 234 REATHDEAVKALKRAGKLVELEV 256
H+E V ++ G V L V
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLTV 85
Score = 71.6 bits (176), Expect = 2e-15
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 31 NNGLGISIKGGKE--NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
G G ++ K + + ++ G+ A + + GD +++V GE + H+E V
Sbjct: 13 PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETV 71
Query: 89 KALKRAGKVVELEV 102
++ G V L V
Sbjct: 72 SRIQGQGSCVSLTV 85
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 75.5 bits (186), Expect = 7e-17
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 168 PDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILS 227
D +K I +++ ++ G G +I P+ + + G A++ L D +L
Sbjct: 9 GDPENGEKLQITIRRGKD-GFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQ 62
Query: 228 VNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTP 264
+N + E ++ + L V R P
Sbjct: 63 LNERPVEHWKCVELAHEIRSCPSEIILLVW--RVSGP 97
Score = 70.9 bits (174), Expect = 3e-15
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+G G +I P+ + + G A++ L D +L +N + E
Sbjct: 24 GKDGFGFTICCDS----PVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAH 78
Query: 90 ALKRAGKVVELEV 102
++ + L V
Sbjct: 79 EIRSCPSEIILLV 91
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 74.6 bits (184), Expect = 1e-16
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
R+ ++K G G ++ K ++ I + G A ++ L D ++ VNG+++
Sbjct: 6 RLCHLRKGPQ-GYGFNLHSDK-SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEG 62
Query: 236 ATHDEAVKALKRAGKLVELEV 256
H E V ++K L V
Sbjct: 63 LRHAEVVASIKAREDEARLLV 83
Score = 70.0 bits (172), Expect = 5e-15
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
G G ++ K ++ I + G A ++ L D ++ VNG+++ H E V
Sbjct: 13 GPQGYGFNLHSDK-SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVA 70
Query: 90 ALKRAGKVVELEV 102
++K L V
Sbjct: 71 SIKAREDEARLLV 83
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 73.9 bits (182), Expect = 2e-16
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
R I + K +G K GK I+ I K +A + L I +NG+++
Sbjct: 4 DPRTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNG-LLTEHNICEINGQNV 55
Query: 234 REATHDEAVKALKRAGKLVELEV 256
+ L +G +V + +
Sbjct: 56 IGLKDSQIADILSTSGTVVTITI 78
Score = 67.3 bits (165), Expect = 3e-14
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 29 TENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAV 88
+G K GK I+ I K +A + L I +NG+++ +
Sbjct: 13 DSTGHVGFIFKNGK-------ITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIA 64
Query: 89 KALKRAGKVVELEV 102
L +G VV + +
Sbjct: 65 DILSTSGTVVTITI 78
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 74.9 bits (184), Expect = 3e-16
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 166 DIPDSVENQKRIIRVKKSENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGD 223
++ + + + + + LG+++ E+ + I IS+I A + ++ GD
Sbjct: 12 EMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGD 71
Query: 224 AILSVNGEDLREATHDEAVKALKRAGKLV 252
I+ +NG +++ A+ +
Sbjct: 72 RIIQINGIEVQNREEAVALLTSEENKNFS 100
Score = 73.7 bits (181), Expect = 6e-16
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 26 YKYTENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
Y+ + LG+++ E+ + I IS+I A + ++ GD I+ +NG +++
Sbjct: 26 YRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE 85
Query: 84 HDEAVKALKRAGKVV 98
A+ +
Sbjct: 86 EAVALLTSEENKNFS 100
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 76.9 bits (188), Expect = 3e-16
Identities = 38/227 (16%), Positives = 64/227 (28%), Gaps = 43/227 (18%)
Query: 31 NNGLGISIKGGKENK--------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
+ LG SI GG + I ++++ A + L GD I+ NG
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINI 58
Query: 83 THDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISITLDENYDN 142
H +AV LK VEL + G E VR + + ++ +
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 143 STVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPI 202
S +++ + V R+ E G P+
Sbjct: 119 SLLISWDASYYGVSY--------------------YRITYGETGGNS-----------PV 147
Query: 203 LISKIFKGMAADQTEQLYVG-DAILSVNGEDLREA-THDEAVKALKR 247
+ + L G D ++V H + R
Sbjct: 148 QEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISINYR 194
Score = 72.3 bits (176), Expect = 1e-14
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 185 NNGLGISIKGGKENK--------MPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
+ LG SI GG + I ++++ A + L GD I+ NG
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINI 58
Query: 237 THDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRG----FLSDSPPSPS 292
H +AV LK VEL + + + G L +P+
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 293 PQS 295
Sbjct: 119 SLL 121
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 77.5 bits (190), Expect = 3e-16
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 10/134 (7%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ R+ +KK + G G ++ K +K I + A+ + L D I+ V
Sbjct: 4 PFTMLRPRLCTMKKGPS-GYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSP 288
NG + H + V A++ G +L V RE +F+K +I + L+
Sbjct: 61 NGVCMEGKQHGDVVSAIRAGGDETKLLVVD-RETDEFFKKCRVIPS------QEHLNGPL 113
Query: 289 PSPSPQSSQRADTR 302
P P + +
Sbjct: 114 PVPFTNGEIQKENS 127
Score = 67.5 bits (164), Expect = 8e-13
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+G G ++ K +K I + A+ + L D I+ VNG + H + V
Sbjct: 18 GPSGYGFNLHSDK-SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVS 75
Query: 90 ALKRAGKVVELEV 102
A++ G +L V
Sbjct: 76 AIRAGGDETKLLV 88
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 74.2 bits (182), Expect = 6e-16
Identities = 17/100 (17%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 174 QKRIIRVKKSENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYV 221
+++ + ++K ++ G G ++G K + + +G A + L +
Sbjct: 27 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRM 85
Query: 222 GDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
GD ++ VNG+++ + H + V +++ G + ++V +
Sbjct: 86 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125
Score = 68.1 bits (166), Expect = 8e-14
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 30 ENNGLGISIKGGK------------ENKMPILISKIFKGMAADQTEQLYVGDAILSVNGE 77
++ G G ++G K + + +G A + L +GD ++ VNG+
Sbjct: 37 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQ 95
Query: 78 DLREATHDEAVKALKRAGKVVELEV 102
++ + H + V +++ G + ++V
Sbjct: 96 NVVKVGHRQVVNMIRQGGNTLMVKV 120
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 72.5 bits (178), Expect = 7e-16
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 229
++ N ++ + LG S++ G I + +G A++ + VG I+ +N
Sbjct: 8 TMGNVTTVLIRRPDLRYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEIN 59
Query: 230 GEDLREATHDEAVKALKRAGKLVELEV 256
G+ + H++ V L A + ++
Sbjct: 60 GQSVVATPHEKIVHILSNAVGEIHMKT 86
Score = 65.9 bits (161), Expect = 1e-13
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG S++ G I + +G A++ + VG I+ +NG+ + H++ V
Sbjct: 22 LRYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVH 73
Query: 90 ALKRAGKVVELEV 102
L A + ++
Sbjct: 74 ILSNAVGEIHMKT 86
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 71.8 bits (176), Expect = 2e-15
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+ R I E LG +++G P+ + + +A GD I+S+ G D
Sbjct: 14 SPPRGIHFTVEEG-DLGFTLRGNT----PVQVHFLDPHCSASLA-GAKEGDYIVSIQGVD 67
Query: 233 LREATHDEAVKALKRAGK-LVELEVKYLREVTPYFRKASIISEVG 276
+ T E +K LK G VE++V V+ +S+ ++ G
Sbjct: 68 CKWLTVSEVMKLLKSFGGEEVEMKV-----VSLLDSTSSMHNKSG 107
Score = 66.0 bits (161), Expect = 2e-13
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
E LG +++G P+ + + +A GD I+S+ G D + T E +K
Sbjct: 24 EEGDLGFTLRGNT----PVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKWLTVSEVMK 78
Query: 90 ALKRAGK-VVELEV 102
LK G VE++V
Sbjct: 79 LLKSFGGEEVEMKV 92
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 76.8 bits (188), Expect = 5e-15
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
++++ +K + +G+ + GG N + I ++ + + A + L GD IL VN D
Sbjct: 11 KLVKFRKGD--SVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQ 294
+EAV L K E+ + ++ Y R + ++ F +
Sbjct: 66 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLS 124
Score = 74.5 bits (182), Expect = 3e-14
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 18 SRDFYSENYKYTE---NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 74
S + K + + +G+ + GG N + I ++ + + A + L GD IL V
Sbjct: 2 SHMILRPSMKLVKFRKGDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 58
Query: 75 NGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY 131
N D +EAV L K E+ + + ++ +Y
Sbjct: 59 NNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY 115
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 69.0 bits (169), Expect = 1e-14
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGKE-------NKMPILISKIFKGMAADQTEQLYVGDAI 225
+ + I + G S++ + + ++ + G A + L GD I
Sbjct: 1 SMRPPIVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEA-GLRAGDLI 58
Query: 226 LSVNGEDLREATHDEAVKALKRAGKLVELEV 256
+NGE + H + V+ L ++G + L
Sbjct: 59 THINGESVLGLVHMDVVELLLKSGNKISLRT 89
Score = 66.7 bits (163), Expect = 9e-14
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 30 ENNGLGISIKGGKE-------NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 82
G S++ + + ++ + G A + L GD I +NGE +
Sbjct: 11 SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEA-GLRAGDLITHINGESVLGL 69
Query: 83 THDEAVKALKRAGKVVELEV 102
H + V+ L ++G + L
Sbjct: 70 VHMDVVELLLKSGNKISLRT 89
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 75.7 bits (185), Expect = 2e-14
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 176 RIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLRE 235
++++ +K + +G+ + GG N + I ++ + + A + L GD IL VN D
Sbjct: 3 KLVKFRKGD--SVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57
Query: 236 ATHDEAVKALKRAGKLVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPS 292
+EAV L K E+ + ++ Y R + ++ F +
Sbjct: 58 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYG 114
Score = 69.6 bits (169), Expect = 1e-12
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
+ +G+ + GG N + I ++ + + A + L GD IL VN D +EAV
Sbjct: 10 GDSVGLRLAGG--NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLF 66
Query: 91 LKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY 131
L K E+ + + ++ +Y
Sbjct: 67 LLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY 107
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 67.0 bits (164), Expect = 7e-14
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
S + + + + K G G +I + + + + L GD I+ +
Sbjct: 5 SSGQAELMTLTIVKGAQ-GFGFTIADSPTGQR------VKQILDIQGCPGLCEGDLIVEI 57
Query: 229 NGEDLREATHDEAVKALK--RAGKLVELEVK 257
N ++++ +H E V LK G L +
Sbjct: 58 NQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88
Score = 64.7 bits (158), Expect = 4e-13
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
G G +I + + + + L GD I+ +N ++++ +H E V
Sbjct: 20 AQGFGFTIADSPTGQR------VKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDI 73
Query: 91 LK--RAGKVVELEV 102
LK G L +
Sbjct: 74 LKDCPIGSETSLII 87
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 66.6 bits (163), Expect = 9e-14
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+R + ++K + +G G ++ G + +L+ + G AA + + GD I+ V
Sbjct: 3 SGSSGVQRCVIIQK-DQHGFGFTVSGDR----IVLVQSVRPGGAAMKAG-VKEGDRIIKV 56
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVKY 258
NG + ++H E VK +K +G V L +
Sbjct: 57 NGTMVTNSSHLEVVKLIK-SGAYVALTLLG 85
Score = 61.9 bits (151), Expect = 3e-12
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
+ +G G ++ G + +L+ + G AA + + GD I+ VNG + ++H E VK
Sbjct: 17 DQHGFGFTVSGDR----IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVK 71
Query: 90 ALKRAGKVVELEVGVGYG 107
+K V +G G
Sbjct: 72 LIKSGAYVALTLLGSSSG 89
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 67.6 bits (165), Expect = 1e-13
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 5 LVLGGPTEAFFFSSRDF--------YSENYKYTENNGLGISIKGGKENKMPILISKIFKG 56
+ L ++ F F+ R F +YK EN G + E I + ++ +G
Sbjct: 12 VTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG 71
Query: 57 MAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
A + L GD I+ VNGE + T+ + + ++ + +EL V
Sbjct: 72 GPAFEA-GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
Score = 67.3 bits (164), Expect = 1e-13
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 30/112 (26%)
Query: 173 NQKRIIRVKKSENNGLGISIKGGK----------------------------ENKMPILI 204
+ + +K++ + G G +++ E I +
Sbjct: 7 GGPKTVTLKRT-SQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFV 65
Query: 205 SKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
++ +G A + L GD I+ VNGE + T+ + + ++ + +EL V
Sbjct: 66 KQVKEGGPAFEA-GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 71.9 bits (175), Expect = 2e-13
Identities = 16/115 (13%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Query: 151 NSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG--KENKMPILISKIF 208
+ + + + I S + ++++K + LG+ + ++++ +
Sbjct: 181 EYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMM 240
Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVT 263
G A ++ +L +GD I+S+NG L +K ++++ +
Sbjct: 241 NGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPP 295
Score = 70.0 bits (170), Expect = 8e-13
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 29 TENNGLGISIKGG--KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
+ LG+ + ++++ + G A ++ +L +GD I+S+NG L
Sbjct: 213 HKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLAT 272
Query: 87 AVKALKRAGKVVELEVGV 104
+K ++++ +
Sbjct: 273 CQGIIKGLKNQTQVKLNI 290
Score = 68.8 bits (167), Expect = 2e-12
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
++ + LG S++ G I + +G A++ + VG I+ +NG+ +
Sbjct: 296 VTTVLIKRPDLKYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSV 347
Query: 234 REATHDEAVKALKRAGKLVELEV 256
H++ V+AL + + ++
Sbjct: 348 VATAHEKIVQALSNSVGEIHMKT 370
Score = 66.1 bits (160), Expect = 1e-11
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 30 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 89
LG S++ G I + +G A++ + VG I+ +NG+ + H++ V+
Sbjct: 306 LKYQLGFSVQNGI-------ICSLMRGGIAERG-GVRVGHRIIEINGQSVVATAHEKIVQ 357
Query: 90 ALKRAGKVVELEV 102
AL + + ++
Sbjct: 358 ALSNSVGEIHMKT 370
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 64.6 bits (158), Expect = 4e-13
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 178 IRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 237
+ + K G G +I + +I + + ++ L GD I+ VN ++++ T
Sbjct: 7 VHIVKGPM-GFGFTIADSPGGGG-QRVKQI---VDSPRSRGLKEGDLIVEVNKKNVQALT 61
Query: 238 HDEAVKALKR--AGKLVELEVK 257
H++ V L G V L V+
Sbjct: 62 HNQVVDMLVESPKGSEVTLLVQ 83
Score = 62.3 bits (152), Expect = 3e-12
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
G G +I + +I + + ++ L GD I+ VN ++++ TH++ V
Sbjct: 13 PMGFGFTIADSPGGGG-QRVKQI---VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDM 68
Query: 91 LKR--AGKVVELEV 102
L G V L V
Sbjct: 69 LVESPKGSEVTLLV 82
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 61.0 bits (148), Expect = 2e-11
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 174 QKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDL 233
I + K G G +I + + I + + L GD I + +++
Sbjct: 12 LLVTIPLIKGPK-GFGFAIADSPTGQK---VKMILD---SQWCQGLQKGDIIKEIYHQNV 64
Query: 234 REATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS 270
+ TH + V+ LK+ ++ + LR P K +
Sbjct: 65 QNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTA 101
Score = 58.7 bits (142), Expect = 9e-11
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 31 NNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKA 90
G G +I + + I + + L GD I + ++++ TH + V+
Sbjct: 22 PKGFGFAIADSPTGQK---VKMILD---SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEV 75
Query: 91 LKRA--GKVVELEV 102
LK+ G V L +
Sbjct: 76 LKQFPVGADVPLLI 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 2e-10
Identities = 79/523 (15%), Positives = 163/523 (31%), Gaps = 173/523 (33%)
Query: 12 EAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 71
+ F + NYK+ L IK E + P ++++++ +Q ++LY + +
Sbjct: 80 QKFV---EEVLRINYKF-----LMSPIK--TEQRQPSMMTRMY----IEQRDRLYNDNQV 125
Query: 72 LS---VNGEDLREATHDEAVKALK--RAGKVVELEVGVGYGRCG----TLETY-----VR 117
+ V+ R + + +AL R K V ++ GV G G L+
Sbjct: 126 FAKYNVS----RLQPYLKLRQALLELRPAKNVLID-GVL-G-SGKTWVALDVCLSYKVQC 178
Query: 118 GQWYKVF-VSL-----EEDYISI------TLDENY----DNSTVLNGTLNSNTV-DSISS 160
+K+F ++L E + + +D N+ D+S+ N L +++ +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAELRR 236
Query: 161 FM------DTVDIPDSVENQKRI----IRVK---KSENNGLGISIKGGKENKMPILISKI 207
+ + + + +V+N K + K + + + I +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHH 294
Query: 208 FKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK----------ALKRAG-------- 249
+ D+ + L + L +DL E + R G
Sbjct: 295 SMTLTPDEVKSLLL--KYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 250 --------KLVELEVKYLR--EVTPYFRKASI------IS----EVGW------------ 277
++E + L E F + S+ I + W
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 278 -ELQRGFLSDSPPSPSPQSSQRADTRYLP-LQLCYLVRNYKHYDSENRTLELHSPDGVHS 335
+L + L + P S T +P + L V+ Y ++ H
Sbjct: 409 NKLHKYSLVEKQPKES--------TISIPSIYLELKVKLENEYALHRSIVD-------HY 453
Query: 336 CILRASDASEASL------WFNTLHSTLHVLTLKSIAEANKI-LGPALLGDLQLIGWLAR 388
I + D+ + +++ H H LK+I ++ L + D +L +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYS--HIGHH---LKNIEHPERMTLFRMVFLDF---RFLEQ 505
Query: 389 KLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELRLYES 431
K+ N S + L+ Y+
Sbjct: 506 KIRHDSTAWNASGSIL---NTLQQ-------------LKFYKP 532
Score = 46.4 bits (109), Expect = 4e-05
Identities = 54/390 (13%), Positives = 108/390 (27%), Gaps = 106/390 (27%)
Query: 12 EAFFFSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI 71
AF S + + T + + I + + D+ + L +
Sbjct: 260 NAFNLSCKILLT-----TRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLL--KY 310
Query: 72 LSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDY 131
L +DL E + R ++ + G W V
Sbjct: 311 LDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLAT--------WDNWKHVNCDKLTTI 358
Query: 132 ISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGIS 191
I +L+ VL D +S F + IP + L +
Sbjct: 359 IESSLN-------VLEPAEYRKMFDRLSVFPPSAHIPTIL----------------LSLI 395
Query: 192 IKGGKENKMPILISKIF-KGMAA-DQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAG 249
++ + ++++K+ + E S+ L E AL R
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLELKVKLENEYALHR-- 447
Query: 250 KLVE---LEVKY-LREVTP-----YF--------------RKASIISEV----GWELQRG 282
+V+ + + ++ P YF + ++ V + L++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQK 506
Query: 283 FLSDSPPSPSPQSSQRADT-----RYLPLQLCYLVRNYKHYDSENRTLE----------L 327
DS + S +T Y P Y+ N Y+ + +
Sbjct: 507 IRHDSTAWNASGSI--LNTLQQLKFYKP----YICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 328 HSPDGVHSCILRASDASEASLWFNTLHSTL 357
S ++ +LR + +E F H +
Sbjct: 561 CSK---YTDLLRIALMAEDEAIFEEAHKQV 587
Score = 45.6 bits (107), Expect = 7e-05
Identities = 83/592 (14%), Positives = 146/592 (24%), Gaps = 190/592 (32%)
Query: 211 MAADQTEQLYVGDAILSVNGED-------------LREATHDEAVK-------ALKRAGK 250
M + E Y ILSV + + E + A+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 251 LVELEVKYLREVTPYFRKASIISEVGWELQRGFLSDSPPSPSPQSSQRADTR-------- 302
L + E+ F + + + + + PS + + R
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 303 -YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLH------- 354
+ + R + LEL V +
Sbjct: 125 VFAKYNVS---RLQPYLKLRQALLELRPAKNV------------------LIDGVLGSGK 163
Query: 355 STLHVLTLKSIAEANKILGPALLGDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRW 414
+ + + S K+ I WL L + E
Sbjct: 164 TWVALDVCLSYKVQCKMDFK--------IFWL--NLKNCNSPE----------------- 196
Query: 415 VSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELR 474
V E +L P R+ S+ ++ R
Sbjct: 197 -----TVLEMLQKLLYQI--------DPNWTSRSDHSSNIKLRIH-------SIQAELRR 236
Query: 475 LYESAP-----------WSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVA 523
L +S P + +AW+ F L L+++ R V F T
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILLTT-RFKQVTDFLSAATTTHISL 291
Query: 524 THHLRAETHRD----LANWARTLVQA--THSCVLNQRQVS-VRCMYRGQPSQLI----VN 572
HH T + L + Q N R++S + R + VN
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 573 YDFGFRLLEATAGSMGR-EPKILWTYPFERLRMSSDDGVK-------LLWLDFGSD---- 620
D +L S+ EP F+RL + L+W D
Sbjct: 352 CD---KLTTIIESSLNVLEPAEYRKM-FDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMV 406
Query: 621 -------LSLQDKIRPGRESNPRSSAYKADALQTKLTRVGSGVLSQAAGVH---IAQLSL 670
SL +K P+ S ++ +L L +H + ++
Sbjct: 407 VVNKLHKYSLVEK-------QPKESTISIPSIYLELKVK----LENEYALHRSIVDHYNI 455
Query: 671 GENSQTRTF---------------HMRCMYRGQPSQLIVN-Y-DFGFRLLEA 705
+ + H++ + + L + DF F LE
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQ 505
Score = 44.8 bits (105), Expect = 1e-04
Identities = 52/415 (12%), Positives = 103/415 (24%), Gaps = 151/415 (36%)
Query: 451 ESSGDDSTDRWVSIFGAVTERELRLYESA---------PWSPEAWSTPAHVFPLVSTRLV 501
T R +F + ++ + + + T P + TR+
Sbjct: 57 SKDAVSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMY 112
Query: 502 SSSRHSDVIVFSVRCGTPQGVATHHL-RAETHRDLANWARTLVQATHSCVLNQRQVSVRC 560
R Q A +++ R + + L L
Sbjct: 113 IEQR-------DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------------ 147
Query: 561 MYRGQPSQLIVNY-DFGF--RLLEATAGSMGREPKILWTYPFERLRMSSDDGVKLLWLDF 617
+P++ ++ G + A + K+ F K+ WL+
Sbjct: 148 ----RPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDF-----------KIFWLNL 189
Query: 618 GSDLS-------LQD---KIRPGRESNPRSSA---YKADALQTKLTRVGSGVLSQAAGVH 664
+ S LQ +I P S S+ + ++Q +L R+ L +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN 245
Query: 665 IAQLSLGE--NSQT-RTFHMRC-----------------MYRGQPSQLIVNYDFGF---- 700
L L N++ F++ C S + ++
Sbjct: 246 -CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDE 302
Query: 701 --RLL-------------EATAGS---------MGREPKILWTY----PFERLRMSSDDG 732
LL E + R+ W ++L +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 733 VKLLWLDFGSEEGEMRLRMSS----DDGVK-------LLWLDFGSEEGE--MREL 774
+ +L E E R L+W D + + +L
Sbjct: 363 LNVL------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 2e-09
Identities = 93/651 (14%), Positives = 158/651 (24%), Gaps = 278/651 (42%)
Query: 217 EQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLREVTPYFRKAS------ 270
QL + + E D+ EL K+L V+ +
Sbjct: 31 SQLQ--EQFNKILPEPTEGFAADDEPTTP------AELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 271 IISEVGWELQRGFLSDS----------PPSPSPQSSQRADTRYLPLQLCYLVRNYKHYDS 320
+++ E + +L + + + + L++NY +
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK-----------ELIKNY--ITA 129
Query: 321 E---NRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLTLKSIAEANKILGPALL 377
R + S S + RA A L A+
Sbjct: 130 RIMAKRPFDKKSN----SALFRAVGEGNAQLV-------------------------AIF 160
Query: 378 GDLQLIGWLARKLGQSDCLENGRASSESSGDDSTDRWVSIFGAVTERELR-LYESAPWSP 436
G GQ G +TD + ELR LY++
Sbjct: 161 G------------GQ------G----------NTDDYF--------EELRDLYQTYHVLV 184
Query: 437 EAWSTPAHNGRASSESSGDDSTDR----------WVSIFGAVTERELRLYESAPWSPEAW 486
+ S ++ W L + P + +
Sbjct: 185 GDLIKFSAE-TLSELIRTTLDAEKVFTQGLNILEW-----------LENPSNTP--DKDY 230
Query: 487 STPAHV-FPLVS-TRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWARTLVQ 544
+ PL+ +L H +V + G G +L+ T ++ LV
Sbjct: 231 LLSIPISCPLIGVIQLA----H--YVVTAKLLGFTPGELRSYLKGATGH-----SQGLVT 279
Query: 545 ATHSCVLNQRQVSVRCMYRGQPSQLIVNYDFGFRLLEATAGSMGREPKILWTYPFERLRM 604
A I A S W E +
Sbjct: 280 AV----------------------AI-----------AETDS--------W----ESFFV 294
Query: 605 SSDDGVKLL-WLDFG---------SDLS---LQDKIRPGRESNPRS----SAYKADALQT 647
S + +L ++ G + L L+D + E P S + +Q
Sbjct: 295 SVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSISNLTQEQVQD 351
Query: 648 KLTRVGSGVLSQAAGVHIAQLSLGENSQTR---TFHMRCMYRGQPSQLIVNYDFGFRLLE 704
+ + S L V I SL N + G P L Y L +
Sbjct: 352 YVNKTNSH-LPAGKQVEI---SL-VNGAKNLVVS--------GPPQSL---YGLNLTLRK 395
Query: 705 ATAGSM---------GREPKILWTY-----PF--------ERLRMSSDDGVKLLW----L 738
A A S R+ K + PF L + + +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 739 D---FGSEEGEMRLRMSSDDGVKLL----------W-----------LDFG 765
+ + +G LR+ S + + W LDFG
Sbjct: 456 QIPVYDTFDGS-DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 42.3 bits (99), Expect = 8e-04
Identities = 42/249 (16%), Positives = 75/249 (30%), Gaps = 85/249 (34%)
Query: 55 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYG------- 107
+GM G DL + T A RA + YG
Sbjct: 1629 QGM------------------GMDLYK-TSKAAQDVWNRADNHFKDT----YGFSILDIV 1665
Query: 108 RCGTLETYV-----RGQWYKVFVSLEEDYISITLDENYDNSTV---LNGTLNSNTVDSIS 159
+ + +G+ + E+Y ++ + D + +N ++
Sbjct: 1666 INNPVNLTIHFGGEKGK------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT- 1718
Query: 160 SFMDTVDIPDSVEN-Q-------KRIIRVKKSENN--------G--LG-----ISIKGGK 196
F + + + Q K KS+ G LG S+
Sbjct: 1719 -FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV- 1776
Query: 197 ENKMPI--LISKIFK-GM----AADQTEQLYVGDAILSVNGEDLREATHDEAVKAL---- 245
M I L+ +F GM A + E ++++N + + EA++ +
Sbjct: 1777 ---MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 246 -KRAGKLVE 253
KR G LVE
Sbjct: 1834 GKRTGWLVE 1842
Score = 40.0 bits (93), Expect = 0.004
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 82/198 (41%)
Query: 585 GS----MGREPKILWTYPFERLRMSSDDGVKLLW--------LDFGSDLSLQDKIRPGRE 632
GS MG + L +S + +W +G S+ D +
Sbjct: 1625 GSQEQGMGMD-----------LYKTSK-AAQDVWNRADNHFKDTYG--FSILDIVI---- 1666
Query: 633 SNPRSSAYKADALQTKLTRVGSGVL---SQAAGVHIAQLSLGENSQTRTFHMRCMYRG-- 687
+NP + + K R + + G + E ++ T +R
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST---SYTFRSEK 1723
Query: 688 ---------QPSQLIVNYDFGFRLLE---------ATAG-SMGREPKILWTY-------- 720
QP+ ++ F L+ AG S+G E Y
Sbjct: 1724 GLLSATQFTQPALTLMEKAA-FEDLKSKGLIPADATFAGHSLG-E------YAALASLAD 1775
Query: 721 --PFERLRMSSDDGVKLL 736
E V+++
Sbjct: 1776 VMSIE-------SLVEVV 1786
Score = 38.9 bits (90), Expect = 0.008
Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 70/198 (35%)
Query: 101 EVGVGYGRCGTLETY-----VRGQWYKVFVSLEEDY-ISIT--LDENYDNSTVLNGTLNS 152
E G+G ++ Y + W + ++ Y SI + N N T+ G
Sbjct: 1628 EQGMG------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 153 NTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMA 212
+ S M I D ++I K E+ S F+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIF--------------KEINEH----STSYTFRSEK 1723
Query: 213 A--DQTE--Q---LYVGDAILSVNGEDLRE----------ATH----------------- 238
T+ Q + A EDL+ A H
Sbjct: 1724 GLLSATQFTQPALTLMEKAAF----EDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 239 DEAVKALKRAGKLVELEV 256
+ V+ + G +++ V
Sbjct: 1780 ESLVEVVFYRGMTMQVAV 1797
Score = 35.8 bits (82), Expect = 0.064
Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 108/271 (39%)
Query: 475 LYESAPWSPEAWSTPA--HV-----FPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHH- 526
LY+++ + + W+ A H F + +V ++ + I F G +G
Sbjct: 1635 LYKTSKAAQDVWNR-ADNHFKDTYGFSI--LDIVINNPVNLTIHF----GGEKGKRIREN 1687
Query: 527 ---LRAETHRDLANWARTLVQATHSCVLNQRQVSVRCMYRG-----------QPSQLIVN 572
+ ET D + + +N+ S +R QP+ ++
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKE-----INEHSTS--YTFRSEKGLLSATQFTQPALTLME 1740
Query: 573 YDFGFRLLE---------ATAG-SMGREPKILWTY----------PFERLRMSSDDGVKL 612
F L+ AG S+G E Y E V++
Sbjct: 1741 KAA-FEDLKSKGLIPADATFAGHSLG-E------YAALASLADVMSIE-------SLVEV 1785
Query: 613 LWLDFGSDLSLQDKIRPGR---ESNPR----SSAYKADALQTKLTRVGSGVLSQAAGVHI 665
+ R G + PR S Y A+ RV + SQ A ++
Sbjct: 1786 V------------FYR-GMTMQVAVPRDELGRSNYGMIAINP--GRVAAS-FSQEALQYV 1829
Query: 666 AQLSLGENSQTRTFHMRCMYRGQPSQLIVNY 696
+ +G+ + G + IVNY
Sbjct: 1830 VE-RVGKRT------------GWLVE-IVNY 1846
Score = 30.8 bits (69), Expect = 2.5
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 58/142 (40%)
Query: 53 IFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL-----KRAGKVVELEVGVGYG 107
+ +A + E ++++N + + EA++ + KR G +VE+ V
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-V----- 1844
Query: 108 RCGTLETYVRGQWYKVFVSLEEDYISITLDENYDNS----TVLNGTLNSNTVDSISSFMD 163
NY N V G L + +D++++ ++
Sbjct: 1845 -------------------------------NY-NVENQQYVAAGDLRA--LDTVTNVLN 1870
Query: 164 TVDIPDSVENQKRI--IRVKKS 183
+ + ++I I ++KS
Sbjct: 1871 FIKL-------QKIDIIELQKS 1885
Score = 30.4 bits (68), Expect = 2.7
Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 81/277 (29%)
Query: 25 NYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAI-LSVNGEDLREAT 83
+Y T LG + P + KG A ++ L AI + + E +
Sbjct: 248 HYVVTAKL-LGFT---------PGELRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 84 HDEAVKALKRAG--------------KVVELEVGVGYGR-------CG----TLETYVRG 118
+A+ L G ++E + G ++ YV
Sbjct: 297 -RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN- 354
Query: 119 QWYKVFVSL-EEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRI 177
K L + I+L N + V++G S + ++ + P + +Q RI
Sbjct: 355 ---KTNSHLPAGKQVEISL-VNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSGL-DQSRI 407
Query: 178 I---RVKKSENNGLGISIKGGKENKMPILI---SKIFKGMAADQTEQLYVGDAI------ 225
R K N L P+ S + A+D + V + +
Sbjct: 408 PFSERKLKFSNRFL------------PVASPFHSHLLVP-ASDLINKDLVKNNVSFNAKD 454
Query: 226 LSV------NGEDLREATHDEAVKALKRAGKLVELEV 256
+ + +G DLR + + + ++ L V
Sbjct: 455 IQIPVYDTFDGSDLRVLS-GSISERIVDC--IIRLPV 488
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 53.1 bits (127), Expect = 1e-08
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 176 RIIRVKKSEN--NGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGED 232
+ I ++KS+ + G S+ +E+ + + ++ + + A + + L GD IL +N
Sbjct: 17 QSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRA 75
Query: 233 LREATHDEAVKALKRA 248
L +
Sbjct: 76 ADALNSSMLKDFLSQP 91
Score = 50.8 bits (121), Expect = 6e-08
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 29 TENNGLGISIKGGKENKM-PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
T + G S+ +E+ + + ++ + + A + + L GD IL +N
Sbjct: 26 TAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRAADALNSSML 84
Query: 88 VKALKRAGKVVELEV 102
L + + +
Sbjct: 85 KDFLSQPSLGLLVRT 99
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 51.4 bits (122), Expect = 4e-08
Identities = 15/99 (15%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 164 TVDIPDSVENQKRIIRVKKSENNGLGISIK---GGKENKMPILISKIF-KGMAADQTEQL 219
+ + D + +I + + G S+ + + ++ ++ + +
Sbjct: 5 SSGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAI 64
Query: 220 YVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKY 258
+ GD IL +NG +R +E A+K+ + ++L +++
Sbjct: 65 HPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEH 103
Score = 47.5 bits (112), Expect = 8e-07
Identities = 13/76 (17%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 29 TENNGLGISIKGGKENKMP-ILISKIF-KGMAADQTEQLYVGDAILSVNGEDLREATHDE 86
G ++++ N + + ++ ++ + ++ GD IL +NG +R +E
Sbjct: 26 ECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEE 85
Query: 87 AVKALKRAGKVVELEV 102
A+K+ + ++L +
Sbjct: 86 VEDAIKQTSQTLQLLI 101
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 50.0 bits (119), Expect = 7e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 176 RIIRVKKSEN--NGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGED 232
I ++KS+ + G S+ +E + ++ + + A + + L GD IL +N
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRA 66
Query: 233 LREATHDEAVKALKRAGKLVELEVKYLREV 262
L + L V+ E+
Sbjct: 67 ADALNSSMLKDFLS--QPSLGLLVRTYPEL 94
Score = 48.0 bits (114), Expect = 3e-07
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 29 TENNGLGISIKGGKE-NKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEA 87
T + G S+ +E + ++ + + A + + L GD IL +N
Sbjct: 17 TAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNRAADALNSSML 75
Query: 88 VKALKR 93
L +
Sbjct: 76 KDFLSQ 81
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 43.8 bits (104), Expect = 1e-04
Identities = 39/209 (18%), Positives = 65/209 (31%), Gaps = 57/209 (27%)
Query: 49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGR 108
+S++ G + + + GD I S+NG+ L + A G V+L + R
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL----LR 320
Query: 109 CGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIP 168
G + +TLD + +S
Sbjct: 321 NGKPLE-----------------VEVTLDTSTSSSA------------------------ 339
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
S E + + L KG I I ++ KG A Q L D I+ V
Sbjct: 340 -SAEMITPALEGATLSDGQLKDGGKG-------IKIDEVVKGSPAAQA-GLQKDDVIIGV 390
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVK 257
N + + E K L ++ L++
Sbjct: 391 NRDRVNSI--AEMRKVLAAKPAIIALQIV 417
Score = 34.9 bits (81), Expect = 0.094
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 32 NGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKAL 91
G +S K+ I I ++ KG A Q L D I+ VN + + E K L
Sbjct: 349 EGATLSDGQLKDGGKGIKIDEVVKGSPAAQA-GLQKDDVIIGVNRDRVNSI--AEMRKVL 405
Query: 92 KRAGKVVELEV 102
++ L++
Sbjct: 406 AAKPAIIALQI 416
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.8 bits (93), Expect = 4e-04
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+ I + G A + L G I S+NG T A G+V+ +
Sbjct: 27 VQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT 79
Score = 39.5 bits (92), Expect = 6e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
+ I + G A + L G I S+NG T A G+++ +
Sbjct: 27 VQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTD 80
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 41.1 bits (97), Expect = 0.001
Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 53/209 (25%)
Query: 49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGR 108
L+S++ A+ L GD I +N + +AT + +L R G V++ V R
Sbjct: 285 LVSQVNPNSPAELA-GLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV----ER 339
Query: 109 CGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIP 168
T +S + + S+ S+ +
Sbjct: 340 DNKPLT-----------------LSAVV-----------TDIKSHEQKLQSNNPFLYGL- 370
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
++ + + ++ G + + + A + + GD I+S
Sbjct: 371 -ALRAF--------EQESPPHGNVIG-------VQVVGASENSAGWRA-GIRPGDIIISA 413
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVK 257
N + + + + K + ++V
Sbjct: 414 NKKPVTDV--KSLQTIAQEKKKELLVQVL 440
Score = 32.3 bits (74), Expect = 0.66
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+ + + A + + GD I+S N + + + + K + ++V
Sbjct: 388 VQVVGASENSAGWRA-GIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQV 439
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 37.6 bits (87), Expect = 0.002
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 451 ESSGDDSTDR-WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV 509
+S+ +++R W ++ A + Y+ P + + SD
Sbjct: 21 DSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDY 80
Query: 510 I----VFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHS 548
V V+ G A L+A +++ W +L + S
Sbjct: 81 TKKKHVLRVK--LANG-ALFLLQAHDDTEMSQWVTSLKAQSDS 120
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 40.0 bits (94), Expect = 0.002
Identities = 30/209 (14%), Positives = 63/209 (30%), Gaps = 60/209 (28%)
Query: 49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYGR 108
+S++ +A + + GD I S+NG+ + A G + L + R
Sbjct: 289 FVSQVLPNSSAAKA-GIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGL----LR 343
Query: 109 CGTLETYVRGQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIP 168
G +++ L ++ N + N +S+
Sbjct: 344 DGKQVN-----------------VNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKD---- 382
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+G ++++ + G A Q L GD I+
Sbjct: 383 ------------------------QG-------VVVNNVKTGTPAAQI-GLKKGDVIIGA 410
Query: 229 NGEDLREATHDEAVKALKRAGKLVELEVK 257
N + ++ E K L ++ L ++
Sbjct: 411 NQQAVKNI--AELRKVLDSKPSVLALNIQ 437
Score = 31.9 bits (73), Expect = 0.87
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
++++ + G A Q L GD I+ N + ++ E K L V+ L +
Sbjct: 385 VVVNNVKTGTPAAQI-GLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNI 436
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/101 (15%), Positives = 41/101 (40%), Gaps = 23/101 (22%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYG 107
+ + + M A +L GD I +++G+ + + + K+AG V +
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRV------- 57
Query: 108 RCGTLETYVR-GQWYKVFVSLEED-------YISITLDENY 140
T++R + ++ + L+ + +TL+ ++
Sbjct: 58 ------TFIRDRKQHEAELVLKPFPHHPNQIGLGVTLEHHH 92
Score = 34.2 bits (79), Expect = 0.019
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
+ + + M A +L GD I +++G+ + + + K+AG + V ++R+
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGD--RVRVTFIRD 62
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEVGVGYG 107
I S + + M A ++ VGD I+S +G++ + A + K+AG V L
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL------- 53
Query: 108 RCGTLETYVR-GQWYKVFVSLEE-------DYISITLDENYD 141
R + +V ++L++ I ++L+ ++
Sbjct: 54 ------KIEREEKEKRVTLTLKQFPDEPDRAGIGVSLEHHHH 89
Score = 35.3 bits (82), Expect = 0.009
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
I S + + M A ++ VGD I+S +G++ + A + K+AG V L++
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKI 55
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 35.8 bits (83), Expect = 0.008
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+ + + + A L+ GD I ++G + + K+ G V++
Sbjct: 9 VYVMSVKDDVPAAD--VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINY 61
Score = 34.6 bits (80), Expect = 0.018
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLR 260
+ + + + A L+ GD I ++G + + K+ G V ++ Y
Sbjct: 9 VYVMSVKDDVPAAD--VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTV--KINYKH 63
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 37.5 bits (88), Expect = 0.012
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
I+++++ A + V D I+SV+ + A A R G V+ + V
Sbjct: 246 IVVNEVSPDGPAANA-GIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVV 299
Score = 36.4 bits (85), Expect = 0.027
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
I+++++ A + V D I+SV+ + A A R G ++ + V +R+
Sbjct: 246 IVVNEVSPDGPAANA-GIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVV--MRD 302
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 36.9 bits (86), Expect = 0.022
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 16/150 (10%)
Query: 113 ETYVRGQWYK-VFVSLEEDYISITLDENYDNSTVLNGTLN---SNTVDSISSFMDTVDIP 168
YV + + L E Y+ E D + + D + F++ P
Sbjct: 18 RAYVDKSFNGQSWFKLRETYLK---KEPMDRRAQTYDAIRKMLAVLDDPFTRFLE----P 70
Query: 169 DSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSV 228
+ +R G+G+ I + +++ G A++ GD I++V
Sbjct: 71 SRLAALRRGT---AGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTV 126
Query: 229 NGEDLREATHDEAVKALK-RAGKLVELEVK 257
+G ++ + + L+ A VE+ +
Sbjct: 127 DGTAVKGMSLYDVSDLLQGEADSQVEVVLH 156
Score = 33.0 bits (76), Expect = 0.34
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G+G+ I + +++ G A++ GD I++V+G ++ + + L+
Sbjct: 86 GVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
Query: 93 -RAGKVVELEV 102
A VE+ +
Sbjct: 145 GEADSQVEVVL 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.035
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 423 ERELRLYESAPWSPEAWSTPAHNGRASSE 451
+ L+LY + + S PA +A+ E
Sbjct: 26 QASLKLY-----ADD--SAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.13
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 7/21 (33%)
Query: 470 ERELRLYESAPWSPEAWSTPA 490
+ L+LY + + S PA
Sbjct: 26 QASLKLY-----ADD--SAPA 39
Score = 31.1 bits (69), Expect = 0.78
Identities = 4/21 (19%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 321 ENRTLELHSPDGVHSCILRAS 341
+ L+L++ D + ++A+
Sbjct: 26 QAS-LKLYADDSAPALAIKAT 45
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 34.5 bits (80), Expect = 0.038
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 24 ENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREAT 83
+ + ++ G +++ + M A+ L D I V+ +++ +T
Sbjct: 41 VSTSDIRRLNIPSNVTSG------VIVRSVQSNMPANGH--LEKYDVITKVDDKEIASST 92
Query: 84 HDEAVKALKRAGKVVELEV 102
++ G +++
Sbjct: 93 DLQSALYNHSIGDTIKITY 111
Score = 32.6 bits (75), Expect = 0.18
Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 184 ENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVK 243
+ ++ G +++ + M A+ L D I V+ +++ +T ++
Sbjct: 47 RRLNIPSNVTSG------VIVRSVQSNMPANGH--LEKYDVITKVDDKEIASSTDLQSAL 98
Query: 244 ALKRAGKLVELEV 256
G +++
Sbjct: 99 YNHSIGDTIKITY 111
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 35.7 bits (83), Expect = 0.045
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 49 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+S++ G + + + GD I S+NG+ L + A G V+L +
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL 318
Score = 34.9 bits (81), Expect = 0.079
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 203 LISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLRE 261
+S++ G + + + GD I S+NG+ L + A G V+L + LR
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL--LRN 321
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 33.0 bits (75), Expect = 0.079
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 451 ESSGDDSTDR-WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV 509
E+ ++ R W +++ + +E+ Y+ A + A P H VS + D
Sbjct: 12 EAHNKKASSRSWHNVYCVINNQEMGFYKDAKSA--ASGIPYHSEVPVSLKEAICEVALDY 69
Query: 510 I----VFSVRCGTPQGVATHHLRAETHRDLANWARTLVQA 545
VF +R G + +A+ ++ W + + A
Sbjct: 70 KKKKHVFKLR--LSDG-NEYLFQAKDDEEMNTWIQAISSA 106
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 32.9 bits (75), Expect = 0.091
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTP 519
RW S+ L Y+ LV +V + F +
Sbjct: 25 RWCSVRD----NHLHFYQD----RNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILH--- 73
Query: 520 QGVATHHLRAETHRDLANWARTLVQATHS 548
+G L A++ ++ +W L+ + S
Sbjct: 74 KGEELAKLEAKSSEEMGHWLGLLLSESGS 102
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 32.6 bits (74), Expect = 0.13
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 451 ESSGDDSTDR-WVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDV 509
E+ G + +R W +++ + L Y+ A + + P H VS S D
Sbjct: 21 EAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAA--SAGVPYHGEVPVSLARAQGSVAFDY 78
Query: 510 I----VFSVRCGTPQGVATHHLRAETHRDLANWARTLVQATHS 548
VF + G + +A+ ++++W R + A S
Sbjct: 79 RKRKHVFKLG--LQDG-KEYLFQAKDEAEMSSWLRVVNAAIAS 118
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 31.5 bits (71), Expect = 0.19
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 201 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVKYLR 260
P+ + +I A + Q+ G + +V+G + + K + + V
Sbjct: 4 PV-VGEIAANSIAAEA-QIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFG 61
Query: 261 E 261
Sbjct: 62 S 62
Score = 29.5 bits (66), Expect = 1.1
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 47 PILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
P+ + +I A + Q+ G + +V+G + + K + + V
Sbjct: 4 PV-VGEIAANSIAAEA-QIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITV 57
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 33.8 bits (76), Expect = 0.24
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 196 KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK--------- 246
K + + + ++ +A L GD I++++ E + ++
Sbjct: 492 KASPQGLDVLNVYHDESAYHA-GLSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHA 550
Query: 247 -RAGKLVELEVKY 258
R +L+ LE+ +
Sbjct: 551 FRRDELMTLELTW 563
Score = 33.8 bits (76), Expect = 0.25
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 42 KENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELE 101
K + + + ++ +A L GD I++++ E + ++ G V +
Sbjct: 492 KASPQGLDVLNVYHDESAYHA-GLSAGDKIIAIDHLQATEQSVKRILERYI-PGDTVTIH 549
Query: 102 V 102
Sbjct: 550 A 550
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 33.4 bits (77), Expect = 0.27
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 55 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+ D +L +GD I SVNG + + + + G V +EV
Sbjct: 270 QSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEV 317
Score = 31.9 bits (73), Expect = 0.72
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 209 KGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEV 256
+ D +L +GD I SVNG + + + + G V +EV
Sbjct: 270 QSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEV 317
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 31.5 bits (72), Expect = 0.29
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+LI K+ G A + L GD IL++ + ++ A E V R + +++
Sbjct: 37 VLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQNA---EDVYEAVRTQSQLAVQI 87
Score = 30.7 bits (70), Expect = 0.52
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH-DEAVKA-------LKRAGKLVE 253
+LI K+ G A + L GD IL++ + ++ A EAV+ ++R + +
Sbjct: 37 VLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIRRGRETLT 95
Query: 254 LEVK 257
L V
Sbjct: 96 LYVT 99
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 32.4 bits (73), Expect = 0.40
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 187 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 246
G S++ + ++ + + D I+S+NG L +
Sbjct: 3 GSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKA 62
Query: 247 RAGKLVELEVKYLREVTPYFRKASIISEVGWE 278
K V++ + + + R+ S+ W
Sbjct: 63 NVEKPVKMLIYSSKTLE--LRETSVTPSNLWG 92
Score = 31.6 bits (71), Expect = 0.66
Identities = 10/70 (14%), Positives = 23/70 (32%)
Query: 33 GLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALK 92
G S++ + ++ + + D I+S+NG L +
Sbjct: 3 GSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKA 62
Query: 93 RAGKVVELEV 102
K V++ +
Sbjct: 63 NVEKPVKMLI 72
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 31.0 bits (70), Expect = 0.46
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 283 FLSDSPPSPSPQSSQRADTR----YLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCIL 338
F DS S + Q + + L+ L K S LEL S DG ++
Sbjct: 45 FFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDG-SEYLI 103
Query: 339 RASDASEASLWFNTLHSTLH 358
+ + S W + +
Sbjct: 104 QHDSEAIISTWHKAIAQGIQ 123
Score = 28.7 bits (64), Expect = 3.7
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 461 WVSIFGAVTERELRLY-------ESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSD--VIV 511
W + + + L + P +STP + L L + + V
Sbjct: 31 WSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRKNV 90
Query: 512 FSVRCGTPQGVATHHLRAETHRDLANWARTLVQATH 547
+R + G + + ++ ++ ++ W + + Q
Sbjct: 91 LELR--SRDG-SEYLIQHDSEAIISTWHKAIAQGIQ 123
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 29.8 bits (67), Expect = 0.63
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 65 LYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
L GD +++NG DL + + + L V
Sbjct: 37 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74
Score = 29.4 bits (66), Expect = 1.0
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
L GD +++NG DL + + + L V+
Sbjct: 37 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 32.5 bits (73), Expect = 0.71
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 16 FSSRDFYSENYKYTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQ--------LYV 67
S + I+ + +++K + G +++ E+
Sbjct: 719 SHSYEMGGTFTDKDPFRSGRIACDFKLDGDH-YVVAKAYAGDYSNEGEKSPIFEYGIDPT 777
Query: 68 GDAILSVNGEDLREATHDEAVKALK-RAGKVVELEV 102
G I ++GE + + L +AG + +
Sbjct: 778 GYLIEDIDGETV--GAGSNIYRVLSEKAGTSARIRL 811
Score = 32.1 bits (72), Expect = 0.86
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 156 DSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQ 215
+ I S E + + K + +++K + G +++
Sbjct: 707 NVIVEMQGEYRTSHSYEMGGTFTDKDPFRSGRIACDFKL---DGDHYVVAKAYAGDYSNE 763
Query: 216 TEQ--------LYVGDAILSVNGEDLREATHDEAVKALK-RAGKLVELEVK 257
E+ G I ++GE + + L +AG + +
Sbjct: 764 GEKSPIFEYGIDPTGYLIEDIDGETV--GAGSNIYRVLSEKAGTSARIRLS 812
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 32.1 bits (72), Expect = 0.78
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 95 GKVVELEVGVGYGRCGTLETYVR---GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLN 151
G ++L + TL T G W+ V + + ++ +D+ +
Sbjct: 56 GGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR 115
Query: 152 SNTVDS 157
TV S
Sbjct: 116 DMTVFS 121
Score = 28.7 bits (63), Expect = 9.0
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 98 VELEVGVGYGRCGTLETYVR-----GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNS 152
V L + +G G L V W+ V V+ ++I++D +
Sbjct: 290 VSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTM 349
Query: 153 NTVDS 157
D
Sbjct: 350 LGSDD 354
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 29.9 bits (67), Expect = 0.92
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 65 LYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
L GD +++NG DL + + + L V
Sbjct: 55 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92
Score = 29.5 bits (66), Expect = 1.3
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 219 LYVGDAILSVNGEDLREATHDEAVKALKRAGKLVELEVK 257
L GD +++NG DL + + + L V+
Sbjct: 55 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 93
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing
factor, RNA binding protein; 2.30A {Pyrococcus
horikoshii} PDB: 3aev_B
Length = 219
Score = 30.8 bits (69), Expect = 1.1
Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 113 ETYVRGQWYKVFVSLEEDY---ISITLDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPD 169
+ G+ + +E+ I+I + T T + V + +
Sbjct: 45 IAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGF 104
Query: 170 SVENQKRIIRVKKSENNGLGISIKGGKENKMPILISKI 207
S E R++ I++ + ++
Sbjct: 105 SPERAFRLLN---EGEYLEIINLTDIIIGNEKNALPRV 139
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 29.6 bits (67), Expect = 1.3
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH-DEAVKALK-------RAGKLVE 253
I + ++ + + + GD I+ VNG L +++ EAV R +
Sbjct: 37 IYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSSELQEAVLTESPLLLEVRRGNDDLL 95
Query: 254 LEVK 257
+
Sbjct: 96 FSIA 99
Score = 28.8 bits (65), Expect = 2.4
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH-DEAVKALK-------RAGKVVE 99
I + ++ + + + GD I+ VNG L +++ EAV R +
Sbjct: 37 IYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSSELQEAVLTESPLLLEVRRGNDDLL 95
Query: 100 LEV 102
+
Sbjct: 96 FSI 98
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 30.7 bits (70), Expect = 1.7
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
I ++ A+ L D I+S+NG+ + A V + + + + V
Sbjct: 256 AYIIEVIPDTPAEAG-GLKENDVIISINGQSVVSAND---VSDVIKRESTLNMVV 306
Score = 29.9 bits (68), Expect = 3.3
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH-DEAVKA-------LKRAGKLVE 253
I ++ A+ L D I+S+NG+ + A + +K ++R + +
Sbjct: 256 AYIIEVIPDTPAEAG-GLKENDVIISINGQSVVSANDVSDVIKRESTLNMVVRRGNEDIM 314
Query: 254 LEVK 257
+ V
Sbjct: 315 ITVI 318
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 30.7 bits (70), Expect = 1.8
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 202 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATH-DEAVKA-------LKRAGKLVE 253
+LI K+ G A + L GD IL++ + ++ A EAV+ ++R + +
Sbjct: 258 VLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIRRGRETLT 316
Query: 254 LEVK 257
L V
Sbjct: 317 LYVT 320
Score = 30.7 bits (70), Expect = 1.8
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 48 ILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKRAGKVVELEV 102
+LI K+ G A + L GD IL++ + ++ A V R + +++
Sbjct: 258 VLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQNAE---DVYEAVRTQSQLAVQI 308
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 30.3 bits (69), Expect = 2.6
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 34 LGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREATHDEAVKALKR 93
LG+ + K+ I ++ G AA + G + V+ + A A K
Sbjct: 231 LGVQVTNDKDTL-GAKIVEVVAGGAAANA-GVPKGVVVTKVDDRPINSADALVAAVRSKA 288
Query: 94 AGKVVELEVGVGYGRCGTLE 113
G V L G T++
Sbjct: 289 PGATVALTFQDPSGGSRTVQ 308
Score = 29.2 bits (66), Expect = 6.0
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 177 IIRVKKSENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVNGEDLREA 236
+I K+ + LG+ + K+ I ++ G AA + G + V+ + A
Sbjct: 220 LISTGKASHASLGVQVTNDKDTL-GAKIVEVVAGGAAANA-GVPKGVVVTKVDDRPINSA 277
Query: 237 THDEAVKALKRAGKLVELEV 256
A K G V L
Sbjct: 278 DALVAAVRSKAPGATVALTF 297
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 30.1 bits (68), Expect = 2.8
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 20 DFYSENYKYTENNGLGISIKGG------KENKMPILISKIFKGMAADQTEQLYVGDAILS 73
+ +S+ + + LIS + G A++ L G I+
Sbjct: 58 NGFSKIDSLLDEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMM 116
Query: 74 VNGEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQ 119
+NG+ + + E ++ R ++ + VG T G+
Sbjct: 117 MNGDYITKKVESELLQGSTRQLQIGVYKEVVGEDGEVTGGVVPIGE 162
Score = 30.1 bits (68), Expect = 3.2
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 119 QWYKVFVSLEEDYISITLDENYDNS--TVLNGTLNSNTVDSISSFMDTVDIPDSVENQKR 176
Q Y L + +Y L + S D+ S +D+ ++
Sbjct: 25 QEY-----LWYRDMPSPAAPDYFQKPEAFLKKAVASM--DNGFSKIDS-----LLDEP-- 70
Query: 177 IIRVKKSENNGLGISIKGGKENKMP--ILISKIFKGMAADQTEQLYVGDAILSVNGEDLR 234
+ G ++ +N LIS + G A++ L G I+ +NG+ +
Sbjct: 71 ------IPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYIT 123
Query: 235 EATHDEAVKALK 246
+ E ++
Sbjct: 124 KKVESELLQGST 135
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 30.3 bits (68), Expect = 2.9
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 27/160 (16%)
Query: 383 IGWLARKLG-QSDCLE---------NGRASSESSGDDSTDRWVSI-----------FGAV 421
G L+R G D L +G A + + + +D + FG V
Sbjct: 166 YGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVV 225
Query: 422 TERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVTERELRLYESAPW 481
LR E+ P R +E + + W + A R +R + W
Sbjct: 226 VRYWLRTAEADVPPEPGRLLP----RPPAEVLLNTTVWPWEGLDEAAFARLVRNH--GRW 279
Query: 482 SPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQG 521
+ + L S ++ S+ + + + T
Sbjct: 280 FEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPD 319
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 28.5 bits (63), Expect = 3.8
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 482 SPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTPQGVATHHLRAETHRDLANWART 541
+ + + F L++ R R D +C V + L A+T + W +
Sbjct: 66 ANREFCARRNTFELITVR---PQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQK 122
Query: 542 LVQA 545
L Q
Sbjct: 123 LNQV 126
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 28.3 bits (63), Expect = 4.0
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 283 FLSDSPPSPSPQSSQRADTRYL-PLQLCY-LVRNYKHYDSENRTLELHSPDGVHSCILRA 340
F + PP+ A +R + L + + +H S L + + G H +L++
Sbjct: 48 FYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPG-HEFLLQS 106
Query: 341 SDASEASLWFNTLHST 356
+E W L +
Sbjct: 107 DHETELRAWHRALRTV 122
>3tu8_A Burkholderia lethal factor 1 (BLF1); toxin, unknown function; 1.04A
{Burkholderia pseudomallei} PDB: 3tua_A
Length = 210
Score = 29.4 bits (65), Expect = 4.0
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 410 STDRWVSIFGAVTERELRLYESAPWSPEAWSTPAHNGRASSESSGDDSTDRWVSIFGAVT 469
S+D W+ + T+R++ A S W+ A+ A+ + G D+ + V + G VT
Sbjct: 120 SSDEWMEDWEVGTDRQVAYLHRAGQSDSLWNLSAYLEGAAPSTYGRDNLGQAV-VGGIVT 178
Query: 470 ER-ELRLYE-------SAPWSPEAWS 487
R ++ LY+ S+ WSP ++
Sbjct: 179 GRQQMSLYQYATTSSGSSAWSPLTYT 204
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 28.5 bits (63), Expect = 4.2
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 460 RWVSIFGAVTERELRLYESAPWSPEAW----STPAHVFPLV--STRLVSSSRHSDVIVFS 513
WV + GA L Y + STP +V +L H D+ F
Sbjct: 27 YWVVLSGAT----LLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDI--FQ 80
Query: 514 VRCGTPQGVATHHLRAETHRDLANWARTLVQATHS 548
+ P + + + W + L A S
Sbjct: 81 LNN--PDKGNVYKFQTGSRFHAILWHKHLDDACKS 113
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 28.1 bits (63), Expect = 4.6
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 302 RYLPLQLCYLVRNYKHYDSENRTLELHSPDGVHSCILRASDASEASLWFNTLHSTLHVLT 361
+ L V + D + + D + + ASD + W +HST+H+L
Sbjct: 49 GDILLDENCCVESLPDKDGKKCLFLVKCFD--KTFEISASDKKKKQEWIQAIHSTIHLLK 106
Query: 362 LKS 364
L S
Sbjct: 107 LGS 109
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 29.0 bits (64), Expect = 4.8
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 98 VELEVGVGYGRCGTLETYVR---GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT 154
+ ++ VG E+ G+++ V + ++ +D G ++
Sbjct: 74 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNER 133
Query: 155 VDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGGKENK 199
+ + E R N+ I I G ++ +
Sbjct: 134 LAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQ 178
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 29.1 bits (64), Expect = 6.7
Identities = 16/180 (8%), Positives = 58/180 (32%), Gaps = 12/180 (6%)
Query: 22 YSENYK------YTENNGLGISIKGGKENKMPILISKIFKGMAADQTEQLYVGDAILSVN 75
++ ++ T N +++ ++ + + +G+ D+T + V AI +
Sbjct: 78 HNTDFALYPQDLVTFANEGILTVNANTKSAEVEMTIRAGEGLQEDKTYAIPV--AISDQS 135
Query: 76 GEDLREATHDEAVKALKRAGKVVELEVGVGYGRCGTLETYVRGQWYKVFVSLEEDYISIT 135
+ + + L + + G ++ Y+ + V +
Sbjct: 136 SDITIKDEDAKHCIYLVKDMRNAGDAYKGE----GVMQGYLFFEVNDVNPLNTLSFQLEN 191
Query: 136 LDENYDNSTVLNGTLNSNTVDSISSFMDTVDIPDSVENQKRIIRVKKSENNGLGISIKGG 195
+D + +N + ++ ++N + +++ + + + + G
Sbjct: 192 GKLLWDVVVLFAANINYDAEAGRPRVQCNPNVQYLLDNNETLLQPLRRRGVKVLLGLLGN 251
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 28.3 bits (63), Expect = 7.8
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 98 VELEVGVGYGRCGTLETYVR-----GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNS 152
V L + +G G L V W+ V V+ ++I++D +
Sbjct: 64 VSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTM 123
Query: 153 NTVDS 157
D
Sbjct: 124 LGSDD 128
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 28.4 bits (63), Expect = 9.3
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 98 VELEVGVGYGRCGTLETYVR---GQWYKVFVSLEEDYISITLDENYDNSTVLNGTLNSNT 154
+ ++ VG E+ G+++ V + ++ +D ++
Sbjct: 288 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVD-SWPVIERYPAGRQLTI 346
Query: 155 VDSISS 160
+S ++
Sbjct: 347 FNSQAT 352
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 27.2 bits (60), Expect = 9.4
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 460 RWVSIFGAVTERELRLYESAPWSPEAWSTPAHVFPLVSTRLVSSSRHSDVIVFSVRCGTP 519
R+ F + Y+ P + P + F + +L+ + R F +RC
Sbjct: 27 RY---FLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPN-TFIIRCLQW 82
Query: 520 QGVATHHLRAETHRDLANWARTLVQATHS 548
V ET + W +
Sbjct: 83 TTVIERTFHVETPEEREEWTTAIQTVADG 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,672,390
Number of extensions: 708758
Number of successful extensions: 2610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2309
Number of HSP's successfully gapped: 431
Length of query: 774
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 673
Effective length of database: 3,881,772
Effective search space: 2612432556
Effective search space used: 2612432556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)