BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4900
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 206/503 (40%), Gaps = 90/503 (17%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCID 71
C GDF C CIP+ RCDG DC N DE+GCP T C D+FRC +G KCI
Sbjct: 47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKT---CSQDEFRCHDG-KCIS 102
Query: 72 AKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET--- 128
+ C+ DC D SDE C C F+C +S CIP + CD DC DGSDE
Sbjct: 103 RQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 162
Query: 129 -------NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSL 181
S C +F C G +CI + CDG DC+D +DEE +C++
Sbjct: 163 CRGLYVFQGDSSPCSAFEFHCLSG------ECIHSSWRCDGGPDCKDKSDEE----NCAV 212
Query: 182 LNC---EFTCQ-ASPTGGVCQCPEGQ--KVANDSRTCLLYMKNNLKQAVRSSTVSSHV-K 234
C EF C + G QC K +D C+ N+ + H +
Sbjct: 213 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV-----NVTLCEGPNKFKCHSGE 267
Query: 235 LVLLEVYVNVLKVRKLPTTAEPQSP---NPCGSNNGGCEHMCIITRASGNALGYKCACDI 291
+ L+ N+ + + + EP N C NNGGC H+C + +GY+C C
Sbjct: 268 CITLDKVCNMARDCR-DWSDEPIKECGTNECLDNNGGCSHVCNDLK-----IGYECLC-- 319
Query: 292 GYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQF 351
P FQ + R +C + C CVN+ +
Sbjct: 320 -----------------PDGFQLVAQRRCEDIDECQDPDTCSQL-----CVNLEGGY-KC 356
Query: 352 ACENG-RCVPSTWKCDSENDCGDGSDEGDFCSEK------TCAYFQFHAIVLGSNLTNPT 404
CE G + P T C + GS F + + T ++ +++ NL N
Sbjct: 357 QCEEGFQLDPHTKACKAV-----GSIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVV 409
Query: 405 DLALDPTSGLMFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFW 458
L + S ++ +D +Q I T +D +S ++S G+A+D ++W
Sbjct: 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 469
Query: 459 CDNLLDYIETVDYEGKNRFLILR 481
D++L + D +G R + R
Sbjct: 470 TDSVLGTVSVADTKGVKRKTLFR 492
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE--EGCPATTGLSCDLDQFRCANG-Q 67
+C +F+C G CI CDG +C++ DE E C + T C F C
Sbjct: 5 RCERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQETCLSVT---CKSGDFSCGGRVN 59
Query: 68 KCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDE 127
+CI +C+ DC + SDE+ C C +F+C + CI + CD RDC+DGSDE
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 119
Query: 128 TNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
+C + C F C CIP+ CD DCED +DE
Sbjct: 120 ASCPVLTCGPASFQC------NSSTCIPQLWACDNDPDCEDGSDE 158
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 114/259 (44%), Gaps = 26/259 (10%)
Query: 2 LYFQVPNFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQF 61
LY + CS +F C G CI RCDG DC+++ DEE C T C D+F
Sbjct: 166 LYVFQGDSSPCSAFEFHC--LSGECIHSSWRCDGGPDCKDKSDEENCAVAT---CRPDEF 220
Query: 62 RCANGQKCIDAKLKCNYHNDCGDNSDEEKC-NFTACH-VGQFKCANSLCIPVSYHCDGYR 119
+C++G CI +C+ DC D SDE C N T C +FKC + CI + C+ R
Sbjct: 221 QCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMAR 279
Query: 120 DCIDGSDE--TNCTSIACPNN----KFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
DC D SDE C + C +N +C G + C Q+ R+ CED DE
Sbjct: 280 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CED-IDE- 336
Query: 174 TVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC-----LLYMKNNLKQAVRSST 228
C D C C G CQC EG ++ ++ C + Y+ + VR T
Sbjct: 337 --CQDPD--TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 392
Query: 229 VSSHVKLVLLEVYVNVLKV 247
+ L+ NV+ +
Sbjct: 393 LDRSEYTSLIPNLRNVVAL 411
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 280 GNALGYKCACDIGYRLSVNGNN-----CNQPTCAPGEFQCAS--GRCVPSTFKCDAENDC 332
G + YK CD G +G++ C TC G+F C RC+P ++CD + DC
Sbjct: 16 GKCISYKWVCD-GSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC 74
Query: 333 GDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
+ SDE GC TCS +F C +G+C+ + CDS+ DC DGSDE C TC F
Sbjct: 75 DNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQ 133
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDET--GCVNVTCSLSQFAC--ENGRCVPST 362
C EFQC G+C+ + CD +C D SDE+ C++VTC F+C RC+P
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 65
Query: 363 WKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
W+CD + DC +GSDE C KTC+ +F
Sbjct: 66 WRCDGQVDCDNGSDE-QGCPPKTCSQDEFR 94
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETN--CTSIACPNNKFLCPMGAAGGKPKC 153
C +F+C + CI + CDG +C DGSDE+ C S+ C + F C G +C
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC----GGRVNRC 61
Query: 154 IPKAQVCDGRKDCEDNADEE 173
IP+ CDG+ DC++ +DE+
Sbjct: 62 IPQFWRCDGQVDCDNGSDEQ 81
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 401 TNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLF 457
+ P + +DP G M+ D +I + ++G S+V+E +G+ LD+ + RL+
Sbjct: 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 555
Query: 458 WCDNLLDYIETVDYEGKNRFLILR 481
W D+ L I ++D G NR IL
Sbjct: 556 WVDSKLHSISSIDVNGGNRKTILE 579
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C N+F C G KCI VCDG +C+D +DE C
Sbjct: 6 CERNEFQCQDG------KCISYKWVCDGSAECQDGSDESQETC 42
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 206/503 (40%), Gaps = 90/503 (17%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCID 71
C GDF C CIP+ RCDG DC N DE+GCP T C D+FRC +G KCI
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKT---CSQDEFRCHDG-KCIS 120
Query: 72 AKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET--- 128
+ C+ DC D SDE C C F+C +S CIP + CD DC DGSDE
Sbjct: 121 RQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 180
Query: 129 -------NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSL 181
S C +F C G +CI + CDG DC+D +DEE +C++
Sbjct: 181 CRGLYVFQGDSSPCSAFEFHCLSG------ECIHSSWRCDGGPDCKDKSDEE----NCAV 230
Query: 182 LNC---EFTCQ-ASPTGGVCQCPEGQ--KVANDSRTCLLYMKNNLKQAVRSSTVSSHV-K 234
C EF C + G QC K +D C+ N+ + H +
Sbjct: 231 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV-----NVTLCEGPNKFKCHSGE 285
Query: 235 LVLLEVYVNVLKVRKLPTTAEPQSP---NPCGSNNGGCEHMCIITRASGNALGYKCACDI 291
+ L+ N+ + + + EP N C NNGGC H+C + +GY+C C
Sbjct: 286 CITLDKVCNMARDCR-DWSDEPIKECGTNECLDNNGGCSHVC-----NDLKIGYECLC-- 337
Query: 292 GYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQF 351
P FQ + R +C + C CVN+ +
Sbjct: 338 -----------------PDGFQLVAQRRCEDIDECQDPDTCSQL-----CVNLEGGY-KC 374
Query: 352 ACENG-RCVPSTWKCDSENDCGDGSDEGDFCSEK------TCAYFQFHAIVLGSNLTNPT 404
CE G + P T C + GS F + + T ++ +++ NL N
Sbjct: 375 QCEEGFQLDPHTKACKAV-----GSIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVV 427
Query: 405 DLALDPTSGLMFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFW 458
L + S ++ +D +Q I T +D +S ++S G+A+D ++W
Sbjct: 428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 487
Query: 459 CDNLLDYIETVDYEGKNRFLILR 481
D++L + D +G R + R
Sbjct: 488 TDSVLGTVSVADTKGVKRKTLFR 510
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE--EGCPATTGLSCDLDQFRCANG-Q 67
+C +F+C G CI CDG +C++ DE E C + T C F C
Sbjct: 23 RCERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQETCLSVT---CKSGDFSCGGRVN 77
Query: 68 KCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDE 127
+CI +C+ DC + SDE+ C C +F+C + CI + CD RDC+DGSDE
Sbjct: 78 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 137
Query: 128 TNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
+C + C F C CIP+ CD DCED +DE
Sbjct: 138 ASCPVLTCGPASFQC------NSSTCIPQLWACDNDPDCEDGSDE 176
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 114/259 (44%), Gaps = 26/259 (10%)
Query: 2 LYFQVPNFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQF 61
LY + CS +F C G CI RCDG DC+++ DEE C T C D+F
Sbjct: 184 LYVFQGDSSPCSAFEFHC--LSGECIHSSWRCDGGPDCKDKSDEENCAVAT---CRPDEF 238
Query: 62 RCANGQKCIDAKLKCNYHNDCGDNSDEEKC-NFTACH-VGQFKCANSLCIPVSYHCDGYR 119
+C++G CI +C+ DC D SDE C N T C +FKC + CI + C+ R
Sbjct: 239 QCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMAR 297
Query: 120 DCIDGSDE--TNCTSIACPNN----KFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
DC D SDE C + C +N +C G + C Q+ R+ CED DE
Sbjct: 298 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CED-IDE- 354
Query: 174 TVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC-----LLYMKNNLKQAVRSST 228
C D C C G CQC EG ++ ++ C + Y+ + VR T
Sbjct: 355 --CQDPD--TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
Query: 229 VSSHVKLVLLEVYVNVLKV 247
+ L+ NV+ +
Sbjct: 411 LDRSEYTSLIPNLRNVVAL 429
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 280 GNALGYKCACDIGYRLSVNGNN-----CNQPTCAPGEFQCAS--GRCVPSTFKCDAENDC 332
G + YK CD G +G++ C TC G+F C RC+P ++CD + DC
Sbjct: 34 GKCISYKWVCD-GSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC 92
Query: 333 GDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
+ SDE GC TCS +F C +G+C+ + CDS+ DC DGSDE C TC F
Sbjct: 93 DNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQ 151
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDET--GCVNVTCSLSQFAC--ENGRCVPST 362
C EFQC G+C+ + CD +C D SDE+ C++VTC F+C RC+P
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 83
Query: 363 WKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
W+CD + DC +GSDE C KTC+ +F
Sbjct: 84 WRCDGQVDCDNGSDE-QGCPPKTCSQDEFR 112
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDI 451
+ N + P + +DP G M+ D +I + ++G S+V+E +G+ LD+
Sbjct: 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 567
Query: 452 NAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+ RL+W D+ L I ++D G NR IL
Sbjct: 568 LSGRLYWVDSKLHSISSIDVNGGNRKTIL 596
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETN--CTSIACPNNKFLCPMGAAGGKPKC 153
C +F+C + CI + CDG +C DGSDE+ C S+ C + F C G +C
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC----GGRVNRC 79
Query: 154 IPKAQVCDGRKDCEDNADEE 173
IP+ CDG+ DC++ +DE+
Sbjct: 80 IPQFWRCDGQVDCDNGSDEQ 99
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADE-ETVCCDCSLLNCEFTC 188
C N+F C G KCI VCDG +C+D +DE + C + + +F+C
Sbjct: 24 CERNEFQCQDG------KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC 72
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 16/109 (14%)
Query: 184 CEFTCQASPTGG------VCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVL 237
C++ C +P C CP+G +A D R+CL ++ + V
Sbjct: 674 CQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL--------TEAEAAVATQETSTVR 725
Query: 238 LEVYVNVLKVRKLPTTAEPQSPNPCGSNNG--GCEHMCIITRASGNALG 284
L+V ++ + T P + G+ G E + + +A G+ G
Sbjct: 726 LKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQALGDVAG 774
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETG-CVNVTC-SLSQFACENGRCVPSTW 363
TC P +F CASGRC+P ++ CD ++DCGD SDE+ C TC L+QF C NGRC+ W
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 364 KCDSENDCGDGSDEG 378
+CD++NDCGD SDE
Sbjct: 64 RCDNDNDCGDNSDEA 78
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 52 TGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEE-KCNFTACH-VGQFKCANSLCI 109
+ +C +QF CA+G +CI C+ +DCGD SDE C + C + QF C N CI
Sbjct: 1 SARTCPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCI 59
Query: 110 PVSYHCDGYRDCIDGSDETNCT 131
+++ CD DC D SDE C+
Sbjct: 60 NINWRCDNDNDCGDNSDEAGCS 81
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEG-CPATTGLSCDLDQFRCANGQK 68
R C P F C G CIP CD DC +R DE C T L QF C NG +
Sbjct: 3 RTCPPNQFSC--ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFP--LTQFTCNNG-R 57
Query: 69 CIDAKLKCNYHNDCGDNSDEEKC 91
CI+ +C+ NDCGDNSDE C
Sbjct: 58 CININWRCDNDNDCGDNSDEAGC 80
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
TC +QF+C +GRC+P +W CD ++DCGD SDE C+ TC
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTC 45
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET-NCTSIAC-PNNKFLCPMGAAGGKPK 152
C QF CA+ CIP+S+ CD DC D SDE+ +C C P +F C G +
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG------R 57
Query: 153 CIPKAQVCDGRKDCEDNADE 172
CI CD DC DN+DE
Sbjct: 58 CININWRCDNDNDCGDNSDE 77
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 278 ASGNALGYKCACDI----GYRLSVNGNNCNQPTCAP-GEFQCASGRCVPSTFKCDAENDC 332
ASG + CD+ G R S +C PTC P +F C +GRC+ ++CD +NDC
Sbjct: 13 ASGRCIPISWTCDLDDDCGDR-SDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDC 71
Query: 333 GDYSDETGC 341
GD SDE GC
Sbjct: 72 GDNSDEAGC 80
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 131 TSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVC 176
++ CP N+F C G +CIP + CD DC D +DE C
Sbjct: 1 SARTCPPNQFSCASG------RCIPISWTCDLDDDCGDRSDESASC 40
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKC 365
TC+ EF+C G+C+ F CD++ DC D SDE C +TC + F C + C+P W C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 366 DSENDCGDGSDE 377
D++ DC DGSDE
Sbjct: 62 DNDPDCEDGSDE 73
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYH 114
+C +FRC +G KCI + C+ DC D SDE C C F+C +S CIP +
Sbjct: 2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 115 CDGYRDCIDGSDE 127
CD DC DGSDE
Sbjct: 61 CDNDPDCEDGSDE 73
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCI 154
C +F+C + CI + CD RDC+DGSDE +C + C F C CI
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQC------NSSTCI 55
Query: 155 PKAQVCDGRKDCEDNADE 172
P+ CD DCED +DE
Sbjct: 56 PQLWACDNDPDCEDGSDE 73
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKC 69
+ CS +F C G CI + CD DC + DE CP L+C F+C N C
Sbjct: 1 KTCSQAEFRCH--DGKCISRQFVCDSDRDCLDGSDEASCPV---LTCGPASFQC-NSSTC 54
Query: 70 IDAKLKCNYHNDCGDNSDE 88
I C+ DC D SDE
Sbjct: 55 IPQLWACDNDPDCEDGSDE 73
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 107/274 (39%), Gaps = 33/274 (12%)
Query: 237 LLEVYVNV---LKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGY 293
L E++ ++ + + +P + NPCG +NGGC H+C+++ Y+CAC G
Sbjct: 247 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---YQCACPTGV 303
Query: 294 RLSVNGNNC---------------------NQPTCAPGEFQCASGRCVPSTFKCDAENDC 332
+L NG C + P Q R + E
Sbjct: 304 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYI 363
Query: 333 GDYSDETGCVN---VTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYF 389
DE + + S SQF P D +D G E T
Sbjct: 364 YWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASG 446
I++ +L P + LDP G M+ D + I R +DG+ + +V+ + +G
Sbjct: 424 TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNG 483
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+ALD + +++W D D IE ++ +G R +++
Sbjct: 484 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGV 447
++ L P +ALDP+SG M+ D + I R MDG+ I++ Y +G+
Sbjct: 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176
Query: 448 ALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
LD ++L+W D L++I + +G NR +++GS
Sbjct: 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 212
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQP 305
NPC NGGC H+C+ G +CAC IG+ L + C P
Sbjct: 579 NPCAEENGGCSHLCLY-----RPQGLRCACPIGFELISDMKTCIVP 619
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
V+ S L +P LA D ++ DS N+I +N+DG++ + + + +ALD +
Sbjct: 78 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 137
Query: 453 AKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
+ ++W D + IE +G +RF+I+
Sbjct: 138 SGFMYWTDWGEVPKIERAGMDGSSRFIII 166
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 411 TSGLMFVADSNQ--ILRTNMDGTMAM-SIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 467
+ GL++ +D ++ I RT + T ++ ++V G+A D ++L+W D+ + IE
Sbjct: 50 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 109
Query: 468 TVDYEGKNRFLIL 480
+ +G R ++
Sbjct: 110 VSNLDGSLRKVLF 122
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 107/274 (39%), Gaps = 33/274 (12%)
Query: 237 LLEVYVNV---LKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGY 293
L E++ ++ + + +P + NPCG +NGGC H+C+++ Y+CAC G
Sbjct: 239 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---YQCACPTGV 295
Query: 294 RLSVNGNNC---------------------NQPTCAPGEFQCASGRCVPSTFKCDAENDC 332
+L NG C + P Q R + E
Sbjct: 296 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYI 355
Query: 333 GDYSDETGCVN---VTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYF 389
DE + + S SQF P D +D G E T
Sbjct: 356 YWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 415
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASG 446
I++ +L P + LDP G M+ D + I R +DG+ + +V+ + +G
Sbjct: 416 TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNG 475
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+ALD + +++W D D IE ++ +G R +++
Sbjct: 476 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 509
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGV 447
++ L P +ALDP+SG M+ D + I R MDG+ I++ Y +G+
Sbjct: 109 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 168
Query: 448 ALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
LD ++L+W D L++I + +G NR +++GS
Sbjct: 169 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 204
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQP 305
NPC NGGC H+C+ G +CAC IG+ L + C P
Sbjct: 571 NPCAEENGGCSHLCLY-----RPQGLRCACPIGFELISDMKTCIVP 611
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
V+ S L +P LA D ++ DS N+I +N+DG++ + + + +ALD +
Sbjct: 70 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 129
Query: 453 AKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
+ ++W D + IE +G +RF+I+
Sbjct: 130 SGFMYWTDWGEVPKIERAGMDGSSRFIII 158
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGV 447
++ L P +ALDP+SG M+ D + I R MDG+ I++ Y +G+
Sbjct: 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171
Query: 448 ALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
LD ++L+W D L++I + +G NR +++GS
Sbjct: 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 207
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 237 LLEVYVNV---LKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGY 293
L E++ ++ + + +P + NPCG +NGGC H+C+++ Y+CAC G
Sbjct: 242 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---YQCACPTGV 298
Query: 294 RLSVNGNNC 302
+L NG C
Sbjct: 299 KLLENGKTC 307
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
V+ S L +P LA D ++ DS N+I +N+DG++ + + + +ALD +
Sbjct: 73 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132
Query: 453 AKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
+ ++W D + IE +G +RF+I+
Sbjct: 133 SGFMYWTDWGEVPKIERAGMDGSSRFIII 161
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 411 TSGLMFVADSNQ--ILRTNMDGTMAM-SIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 467
+ GL++ +D ++ I RT + T ++ ++V G+A D ++L+W D+ + IE
Sbjct: 45 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 104
Query: 468 TVDYEGKNRFLIL 480
+ +G R ++
Sbjct: 105 VSNLDGSLRKVLF 117
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGV 447
++ L P +ALDP+SG M+ D + I R MDG+ I++ Y +G+
Sbjct: 109 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 168
Query: 448 ALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
LD ++L+W D L++I + +G NR +++GS
Sbjct: 169 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 204
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 237 LLEVYVNV---LKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGY 293
L E++ ++ + + +P + NPCG +NGGC H+C+++ Y+CAC G
Sbjct: 239 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---YQCACPTGV 295
Query: 294 RLSVNGNNC 302
+L NG C
Sbjct: 296 KLLENGKTC 304
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
V+ S L +P LA D ++ DS N+I +N+DG++ + + + +ALD +
Sbjct: 70 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 129
Query: 453 AKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
+ ++W D + IE +G +RF+I+
Sbjct: 130 SGFMYWTDWGEVPKIERAGMDGSSRFIII 158
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 411 TSGLMFVADSNQ--ILRTNMDGTMAM-SIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 467
+ GL++ +D ++ I RT + T ++ ++V G+A D ++L+W D+ + IE
Sbjct: 42 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 101
Query: 468 TVDYEGKNRFLIL 480
+ +G R ++
Sbjct: 102 VSNLDGSLRKVLF 114
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETG--CVNVTCSLSQFACEN--GRCVPST 362
C EFQC G+C+ + CD +C D SDE+ C++VTC F+C RC+P
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 67
Query: 363 WKCDSENDCGDGSDE 377
W+CD + DC +GSDE
Sbjct: 68 WRCDGQVDCDNGSDE 82
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETN--CTSIACPNNKFLCPMGAAGGKPKC 153
C +F+C + CI + CDG +C DGSDE+ C S+ C + F C G +C
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC----GGRVNRC 63
Query: 154 IPKAQVCDGRKDCEDNADEE 173
IP+ CDG+ DC++ +DE+
Sbjct: 64 IPQFWRCDGQVDCDNGSDEQ 83
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 50 ATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE--EKCNFTACHVGQFKCANSL 107
+ G C+ ++F+C +G KCI K C+ +C D SDE E C C G F C +
Sbjct: 2 SAVGDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV 60
Query: 108 --CIPVSYHCDGYRDCIDGSDETNC 130
CIP + CDG DC +GSDE C
Sbjct: 61 NRCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C GDF C CIP+ RCDG DC N DE+GC
Sbjct: 49 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 280 GNALGYKCACDIGYRLSVNGNN-----CNQPTCAPGEFQCAS--GRCVPSTFKCDAENDC 332
G + YK CD G +G++ C TC G+F C RC+P ++CD + DC
Sbjct: 18 GKCISYKWVCD-GSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC 76
Query: 333 GDYSDETGC 341
+ SDE GC
Sbjct: 77 DNGSDEQGC 85
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 342 VNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
V C ++F C++G+C+ W CD +C DGSDE S++TC
Sbjct: 4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE----SQETC 44
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE--EGCPATTGLSCDLDQFRCANG-Q 67
+C +F+C G CI CDG +C++ DE E C + T C F C
Sbjct: 7 RCERNEFQC--QDGKCISYKWVCDGSAECQDGSDESQETCLSVT---CKSGDFSCGGRVN 61
Query: 68 KCIDAKLKCNYHNDCGDNSDEEKC 91
+CI +C+ DC + SDE+ C
Sbjct: 62 RCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C N+F C G KCI VCDG +C+D +DE C
Sbjct: 8 CERNEFQCQDG------KCISYKWVCDGSAECQDGSDESQETC 44
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 59 DQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGY 118
D F+C NG K I C+ NDCGD SDE C AC F C + +CIP Y C+G
Sbjct: 207 DFFQCVNG-KYISQMKACDGINDCGDQSDELCCK--ACQGKGFHCKSGVCIPSQYQCNGE 263
Query: 119 RDCIDGSDETNCTSIA 134
DCI G DE C A
Sbjct: 264 VDCITGEDEVGCAGFA 279
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 312 FQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDC 371
FQC +G+ + CD NDCGD SDE C C F C++G C+PS ++C+ E DC
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCC--KACQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 372 GDGSDE 377
G DE
Sbjct: 267 ITGEDE 272
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 101 FKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVC 160
F+C N I CDG DC D SDE C AC F C G CIP C
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCK--ACQGKGFHCKSGV------CIPSQYQC 260
Query: 161 DGRKDCEDNADE 172
+G DC DE
Sbjct: 261 NGEVDCITGEDE 272
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
C F C SG C+PS ++C+ E DC DE GC
Sbjct: 241 CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 13 SPGD--FECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCI 70
SP D F+C +G I + K CDG DC ++ DE C A C F C +G CI
Sbjct: 203 SPMDDFFQC--VNGKYISQMKACDGINDCGDQSDELCCKA-----CQGKGFHCKSGV-CI 254
Query: 71 DAKLKCNYHNDCGDNSDEEKC 91
++ +CN DC DE C
Sbjct: 255 PSQYQCNGEVDCITGEDEVGC 275
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPA--------TTGLSCDLDQF 61
+ C F C G+CIP +C+G DC +DE GC T L+ D+D
Sbjct: 239 KACQGKGFHCKS--GVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAE 296
Query: 62 RCANGQKCIDAKLKCNYHN 80
R K + KL C N
Sbjct: 297 R--RRIKSLLPKLSCGVKN 313
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETG--CVNV--------TCSLSQFACEN 355
TC P FQC S C+P + CD + DC D SDE C + CS +F C +
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 65
Query: 356 GRCVPSTWKCDSENDCGDGSDE 377
G C+ S+W+CD DC D SDE
Sbjct: 66 GECIHSSWRCDGGPDCKDKSDE 87
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE--EKC--------NFTACHVGQFKC 103
L+C F+C N CI C+ DC D SDE ++C + + C +F C
Sbjct: 5 LTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 63
Query: 104 ANSLCIPVSYHCDGYRDCIDGSDETNCT 131
+ CI S+ CDG DC D SDE NC
Sbjct: 64 LSGECIHSSWRCDGGPDCKDKSDEENCA 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET----------NCTSIACPNNKFLCPMG 145
C F+C +S CIP + CD DC DGSDE S C +F C G
Sbjct: 7 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG 66
Query: 146 AAGGKPKCIPKAQVCDGRKDCEDNADEE 173
+CI + CDG DC+D +DEE
Sbjct: 67 ------ECIHSSWRCDGGPDCKDKSDEE 88
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 15/63 (23%)
Query: 344 VTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE------------GDFCSEKTCAYFQF 391
+TC + F C + C+P W CD++ DC DGSDE GD C+ F+F
Sbjct: 5 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD---SSPCSAFEF 61
Query: 392 HAI 394
H +
Sbjct: 62 HCL 64
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE-----EGCPATTGLS--CDLDQFRCA 64
C P F+C+ CIP+ CD DC + DE G G S C +F C
Sbjct: 7 CGPASFQCN--SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL 64
Query: 65 NGQKCIDAKLKCNYHNDCGDNSDEEKC 91
+G+ CI + +C+ DC D SDEE C
Sbjct: 65 SGE-CIHSSWRCDGGPDCKDKSDEENC 90
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVT 345
C+ EF C SG C+ S+++CD DC D SDE C T
Sbjct: 56 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT 94
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 2 LYFQVPNFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATT 52
LY + CS +F C G CI RCDG DC+++ DEE C T
Sbjct: 46 LYVFQGDSSPCSAFEFHC--LSGECIHSSWRCDGGPDCKDKSDEENCAVAT 94
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 90/268 (33%), Gaps = 67/268 (25%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQ-CASGR 318
N C S+NG C H+C+ G + C C Y L+ + C+ PT Q A R
Sbjct: 264 NECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 319
Query: 319 CV----------------------------PSTFKCDAENDCGDYSDETGCVNVTCSLSQ 350
V + D+ + + E G T +S
Sbjct: 320 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS 379
Query: 351 FACENGRCVPS-----------TWKCDSENDCG----DGSDEGDFCSEKTCAYFQFHAIV 395
+N P W C++ N DG G +V
Sbjct: 380 VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVG---------------VV 424
Query: 396 LGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
L P + ++P G M+ + S +I R +DGT + K +ALD
Sbjct: 425 LKGEQDRPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 484
Query: 452 NAKRLFWCDNLLDYIETVDYEGKNRFLI 479
+LFW D+ L IE+ D G NR ++
Sbjct: 485 RLGKLFWADSDLRRIESSDLSGANRIVL 512
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASG 446
Q +++ +L +P LALDP G M+ + +I R MDG+ ++V +A+G
Sbjct: 110 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVG-RANG 168
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479
+ +D +RL+W D + IE+ + G NR +I
Sbjct: 169 LTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI 201
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 406 LALDPTSGLMFVADSN--QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL 463
L D T ++ D + I R M+G+ +V G+A+D K L+W D
Sbjct: 40 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGT 99
Query: 464 DYIETVDYEGKNRFLIL 480
+ IE +G++R +++
Sbjct: 100 NRIEVSKLDGQHRQVLV 116
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQP 305
+PC +NGGC H+C++ + G +C+C + L + +C +P
Sbjct: 578 HPCAQDNGGCSHICLV-KGDGTT---RCSCPMHLVLLQDELSCGEP 619
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 399 NLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAA------YKASGVALD 450
+L N + DP ++ DS Q I + DG+ ++V + + +++D
Sbjct: 336 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 395
Query: 451 INAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
I ++ ++W + I +G++ ++L+G Q+
Sbjct: 396 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQD 430
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 90/268 (33%), Gaps = 67/268 (25%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQ-CASGR 318
N C S+NG C H+C+ G + C C Y L+ + C+ PT Q A R
Sbjct: 271 NECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 326
Query: 319 CV----------------------------PSTFKCDAENDCGDYSDETGCVNVTCSLSQ 350
V + D+ + + E G T +S
Sbjct: 327 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS 386
Query: 351 FACENGRCVPS-----------TWKCDSENDCG----DGSDEGDFCSEKTCAYFQFHAIV 395
+N P W C++ N DG G +V
Sbjct: 387 VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVG---------------VV 431
Query: 396 LGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
L P + ++P G M+ + S +I R +DGT + K +ALD
Sbjct: 432 LKGEQDRPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 491
Query: 452 NAKRLFWCDNLLDYIETVDYEGKNRFLI 479
+LFW D+ L IE+ D G NR ++
Sbjct: 492 RLGKLFWADSDLRRIESSDLSGANRIVL 519
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASG 446
Q +++ +L +P LALDP G M+ + +I R MDG+ ++V +A+G
Sbjct: 117 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVG-RANG 175
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479
+ +D +RL+W D + IE+ + G NR +I
Sbjct: 176 LTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI 208
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 406 LALDPTSGLMFVADSN--QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL 463
L D T ++ D + I R M+G+ +V G+A+D K L+W D
Sbjct: 47 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGT 106
Query: 464 DYIETVDYEGKNRFLIL 480
+ IE +G++R +++
Sbjct: 107 NRIEVSKLDGQHRQVLV 123
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 399 NLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAA------YKASGVALD 450
+L N + DP ++ DS Q I + DG+ ++V + + +++D
Sbjct: 343 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 402
Query: 451 INAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
I ++ ++W + I +G++ ++L+G Q+
Sbjct: 403 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQD 437
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 260 NPCGSNNGGCEHMCII 275
+PC +NGGC H+C++
Sbjct: 585 HPCAQDNGGCSHICLV 600
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 89/264 (33%), Gaps = 59/264 (22%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQ-CASGR 318
N C S+NG C H+C+ G + C C Y L+ + C+ PT Q A R
Sbjct: 266 NECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 321
Query: 319 CV----------------------------PSTFKCDAENDCGDYSDETGCVNVTCSLSQ 350
V + D+ + + E G T +S
Sbjct: 322 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS 381
Query: 351 FACENGRCVPS-----------TWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSN 399
+N P W C++ N +G +VL
Sbjct: 382 VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV-----------GVVLKGE 430
Query: 400 LTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455
P + ++P G M+ + S +I R +DGT + K +ALD +
Sbjct: 431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK 490
Query: 456 LFWCDNLLDYIETVDYEGKNRFLI 479
LFW D+ L IE+ D G NR ++
Sbjct: 491 LFWADSDLRRIESSDLSGANRIVL 514
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASG 446
Q +++ +L +P LALDP G M+ + +I R MDG+ ++V +A+G
Sbjct: 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVG-RANG 170
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479
+ +D +RL+W D + IE+ + G NR +I
Sbjct: 171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI 203
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 406 LALDPTSGLMFVADSN--QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL 463
L D T ++ D + I R M+G+ +V G+A+D K L+W D
Sbjct: 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGT 101
Query: 464 DYIETVDYEGKNRFLIL 480
+ IE +G++R +++
Sbjct: 102 NRIEVSKLDGQHRQVLV 118
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 399 NLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAA------YKASGVALD 450
+L N + DP ++ DS Q I + DG+ ++V + + +++D
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397
Query: 451 INAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
I ++ ++W + I +G++ ++L+G Q+
Sbjct: 398 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQD 432
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 260 NPCGSNNGGCEHMCII 275
+PC +NGGC H+C++
Sbjct: 580 HPCAQDNGGCSHICLV 595
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDI 451
+ N + P + +DP G M+ D +I + ++G S+V+E +G+ LD+
Sbjct: 236 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 295
Query: 452 NAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+ RL+W D+ L I ++D G NR IL
Sbjct: 296 LSGRLYWVDSKLHSISSIDVNGGNRKTIL 324
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 62/236 (26%)
Query: 308 APGEFQCASGRCVPSTFKCDAENDCGDYSDET--------------GCVNVTCSLS---Q 350
P +F+C SG C+ C+ DC D+SDE GC +V L +
Sbjct: 3 GPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 62
Query: 351 FACENGRCVPSTWKCDSENDCGDGSD--------EGDF---CSE--------KTC----- 386
C +G + + +C+ ++C D EG + C E K C
Sbjct: 63 CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 122
Query: 387 -AYFQF---HAI-----------VLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMD 429
AY F H + L NL N L + S ++ +D +Q I T +D
Sbjct: 123 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 182
Query: 430 GTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481
+S ++S G+A+D ++W D++L + D +G R + R
Sbjct: 183 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 238
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 100 QFKCANSLCIPVSYHCDGYRDCIDGSDE--TNCTSIACPNN----KFLCPMGAAGGKPKC 153
+FKC + CI + C+ RDC D SDE C + C +N +C G + C
Sbjct: 6 KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 65
Query: 154 IPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC- 212
Q+ R+ CED DE C D C C G CQC EG ++ ++ C
Sbjct: 66 PDGFQLVAQRR-CED-IDE---CQDPD--TCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 118
Query: 213 ----LLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKV 247
+ Y+ + VR T+ L+ NV+ +
Sbjct: 119 AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 157
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 89/229 (38%), Gaps = 41/229 (17%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVP 321
C NNGGC C + R + +C C GYRL+ +G C E C+ G C
Sbjct: 6 CNVNNGGCAQKCQMIRGA-----VQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG-CTN 59
Query: 322 S--TFKCDAENDCGDYSDETGCVNV---TCSLSQFACENGRCVPSTWKCDSENDCGDGSD 376
S F+C E D C + L + + +P
Sbjct: 60 SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR-------------- 105
Query: 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAM 434
SE T +L +NL N L L+F +D ++ILR N++G+
Sbjct: 106 -----SEYT---------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151
Query: 435 SIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
+VS G+A+D +L+W D+ IE + +G +R ++L S
Sbjct: 152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS 200
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALD 450
++L +L P +AL P G ++ D + +I ++MDG+ I + +G+ +D
Sbjct: 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID 254
Query: 451 INAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+R++W D IE + +G +R ++
Sbjct: 255 YAGRRMYWVDAKHHVIERANLDGSHRKAVI 284
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 245 LKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304
+ + L +P N CG NNGGC H+C+ SG Y CAC G+R +N + C Q
Sbjct: 333 MDIHTLHPQRQPAGKNRCGDNNGGCTHLCL---PSGQ--NYTCACPTGFR-KINSHACAQ 386
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDI 451
+ N + P + +DP G M+ D +I + ++G S+V+E +G+ LD+
Sbjct: 196 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 255
Query: 452 NAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+ RL+W D+ L I ++D G NR IL
Sbjct: 256 LSGRLYWVDSKLHSISSIDVNGGNRKTIL 284
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 52/236 (22%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRC 319
N C NNGGC H+C + +GY+C C P FQ + R
Sbjct: 1 NECLDNNGGCSHVC-----NDLKIGYECLC-------------------PDGFQLVAQR- 35
Query: 320 VPSTFKCDAENDCGDYSD-ETGCVNVTCSLSQFACENG-RCVPSTWKCDSENDCGDGSDE 377
+C+ ++C D CVN+ + CE G + P T C + GS
Sbjct: 36 -----RCEDIDECQDPDTCSQLCVNLEGGY-KCQCEEGFQLDPHTKACKAV-----GSIA 84
Query: 378 GDFCSEK------TCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMD 429
F + + T ++ +++ NL N L + S ++ +D +Q I T +D
Sbjct: 85 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 142
Query: 430 GTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481
+S ++S G+A+D ++W D++L + D +G R + R
Sbjct: 143 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 198
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 399 NLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455
N + P + +DP G M+ D +I + ++G S+V+E +G+ LD+ + R
Sbjct: 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 177
Query: 456 LFWCDNLLDYIETVDYEGKNRFLIL 480
L+W D+ L I ++D G NR IL
Sbjct: 178 LYWVDSKLHSISSIDVNGGNRKTIL 202
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 396 LGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVAL 449
L NL N L + S ++ +D +Q I T +D +S ++S G+A+
Sbjct: 25 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84
Query: 450 DINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481
D ++W D++L + D +G R + R
Sbjct: 85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 116
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDET 339
+C+ +F+C SGRC+P + CD +NDCGDYSDET
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
+CS +QF C +GRC+P W CD +NDCGD SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET--NCT 131
+C QFKC + CIP + CDG DC D SDET NCT
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFT 94
SC QF+C +G +CI C+ NDCGD SDE N T
Sbjct: 4 SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 132 SIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
S +C + +F C G +CIP+ CDG DC D +DE C
Sbjct: 2 SHSCSSTQFKCNSG------RCIPEHWTCDGDNDCGDYSDETHANC 41
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVN 343
TC P EFQC+ G C+ + +CD E DC D SDE GCVN
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGCVN 40
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 344 VTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
TC +F C +G C+ + +CD E DC D SDE
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C P +F+C G CI ++CD YDC++ DE GC
Sbjct: 4 CRPDEFQC--SDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 93 FTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132
C +F+C++ CI S CD DC D SDE C +
Sbjct: 1 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGCVN 40
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVN 343
TC P EFQC+ G C+ + +CD E DC D SDE GCVN
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 39
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
TC +F C +G C+ + +CD E DC D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C P +F+C G CI ++CD YDC++ DE GC
Sbjct: 3 CRPDEFQC--SDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132
C +F+C++ CI S CD DC D SDE C +
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 39
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
+L +NL N L L+F +D ++ILR N++G+ +VS G+A+D
Sbjct: 67 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV 126
Query: 453 AKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
+L+W D+ IE + +G +R ++L S
Sbjct: 127 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQS 157
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALD 450
++L +L P +AL P G ++ D + +I ++MDG+ I + +G+ +D
Sbjct: 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID 211
Query: 451 INAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+R++W D IE + +G +R ++
Sbjct: 212 YAGRRMYWVDAKHHVIERANLDGSHRKAVI 241
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 245 LKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ + L +P N CG NNGGC H+C+ SG Y CAC G+R +N + C
Sbjct: 290 MDIHTLHPQRQPAGKNRCGDNNGGCTHLCL---PSGQ--NYTCACPTGFR-KINSHAC 341
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 305 PTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDET 339
P C PGEF CA+ RC+ +KCD +NDC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDEG 378
C +FAC N RC+ WKCD +NDC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET 128
C G+F CANS CI + CDG DC+D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE 88
C +F CAN +CI + KC+ NDC DNSDE
Sbjct: 5 QCQPGEFACANS-RCIQERWKCDGDNDCLDNSDE 37
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 346 CSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
C QF C N RC+PS W+CD ++DC D SDE D
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD 41
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
C +FQC + RC+PS ++CD ++DC D+SDE C
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130
C QF+C N CIP + CD DC+D SDE +C
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
C+ DQF+C N ++CI + +C+ +DC D+SDE+ C
Sbjct: 7 ECEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDC 42
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 344 VTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
+C +Q+ C+N +C+ W CD++NDCGDGSDE
Sbjct: 5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSI 133
+C Q+ C N CI ++ CD DC DGSDE NC S
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNST 44
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
+C ++ C + +C+ + CD +NDCGD SDE C
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 41
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFT 94
SC Q+ C N Q CI C+ NDCGD SDE+ CN T
Sbjct: 6 SCLDTQYTCDNHQ-CISKNWVCDTDNDCGDGSDEKNCNST 44
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 95 ACHVGQFKC-ANSLCIPVSYHCDGYRDCIDGSDETNCTSI 133
CH +F+C + LCIP+ + CDG DC+D SDE +C +
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 307 CAPGEFQC-ASGRCVPSTFKCDAENDCGDYSDETGCVNV 344
C EFQC G C+P ++CD + DC D SDE C V
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 346 CSLSQFACE-NGRCVPSTWKCDSENDCGDGSDE 377
C +F C +G C+P W+CD + DC D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 56 CDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
C D+F+C CI + +C+ DC D+SDE+ C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPAT 51
C +F+C G+CIP RCDG DC + DE+ C
Sbjct: 4 CHTDEFQC-RLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding
Domain Of Tva
Length = 47
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 6 VPNFRKCSPGDFECDPP---HGICIPKDKRCDGYYDCRNRKDEEGC 48
+ F C PG F C P HG C P+D CDG+ DC + +DE GC
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 92 NFTACHVGQFKC-----ANSLCIPVSYHCDGYRDCIDGSDETNC 130
F +C GQF+C A+ C P + CDG+ DC DG DE C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 306 TCAPGEFQC-----ASGRCVPSTFKCDAENDCGDYSDETGC 341
+C PG+F+C A G C P + CD DC D DE GC
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 134 ACPNNKFLC--PMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
+CP +F C P GA G +C P+ +CDG DC+D DE
Sbjct: 6 SCPPGQFRCSEPPGAHG---ECYPQDWLCDGHPDCDDGRDE 43
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 345 TCSLSQFACE-----NGRCVPSTWKCDSENDCGDGSDE 377
+C QF C +G C P W CD DC DG DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 59 DQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFT 94
++FRC +G +CI KL+CN NDCGDNSDE C T
Sbjct: 121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDCGRT 155
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 311 EFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
+F+C SGRC+ +C+ ENDCGD SDE C
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 350 QFACENGRCVPSTWKCDSENDCGDGSDEGD 379
+F C++GRC+ +C+ ENDCGD SDE D
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERD 151
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 100 QFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130
+F+C + CI C+G DC D SDE +C
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERDC 152
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of
Tva
Length = 47
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 11 KCSPGDFECDPP---HGICIPKDKRCDGYYDCRNRKDEEGC 48
+C PG F C P HG C P+D CDG+ DC + +DE GC
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 94 TACHVGQFKC-----ANSLCIPVSYHCDGYRDCIDGSDETNCTS 132
+ C GQF+C A+ C P + CDG+ DC DG DE C +
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 307 CAPGEFQC-----ASGRCVPSTFKCDAENDCGDYSDETGC 341
C PG+F+C A G C P + CD DC D DE GC
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 132 SIACPNNKFLC--PMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
S CP +F C P GA G +C P+ +CDG DC+D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHG---ECYPQDWLCDGHPDCDDGRDE 41
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 346 CSLSQFACE-----NGRCVPSTWKCDSENDCGDGSDE 377
C QF C +G C P W CD DC DG DE
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
L+C QF+CA+G CI+++ +C+ DC DNSDE C
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 96 CHVGQFKCAN-SLCIPVSYHCDGYRDCIDGSDETNCTS 132
C QFKCA+ S CI Y CDG DC D SDE C +
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49
C+ F+C CI RCDG YDCR+ DE GCP
Sbjct: 7 CTSAQFKC-ADGSSCINSRYRCDGVYDCRDNSDEAGCP 43
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 307 CAPGEFQCASGR-CVPSTFKCDAENDCGDYSDETGC 341
C +F+CA G C+ S ++CD DC D SDE GC
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 340 GCVNVTCSLSQFACENGR-CVPSTWKCDSENDCGDGSDE 377
G + + C+ +QF C +G C+ S ++CD DC D SDE
Sbjct: 1 GAMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C GDF C CIP+ RCDG DC N DE+GC
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 340 GCVNVTCSLSQFACEN--GRCVPSTWKCDSENDCGDGSDE 377
G ++VTC F+C RC+P W+CD + DC +GSDE
Sbjct: 1 GSLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 306 TCAPGEFQCAS--GRCVPSTFKCDAENDCGDYSDETGC 341
TC G+F C RC+P ++CD + DC + SDE GC
Sbjct: 6 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 94 TACHVGQFKCANSL--CIPVSYHCDGYRDCIDGSDETNC 130
C G F C + CIP + CDG DC +GSDE C
Sbjct: 5 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 132 SIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
S+ C + F C G +CIP+ CDG+ DC++ +DE+
Sbjct: 4 SVTCKSGDFSC----GGRVNRCIPQFWRCDGQVDCDNGSDEQ 41
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDE 338
TC P FQC S C+P + CD + DC D SDE
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
TC + F C + C+P W CD++ DC DGSDE
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDE 127
C F+C +S CIP + CD DC DGSDE
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 406 LALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL 463
LA D +++ D ++ I R ++ G +I+ + G+ALD + +FW D+ L
Sbjct: 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQL 100
Query: 464 DYIETVDYEGKNRFLIL 480
D IE +G R ++
Sbjct: 101 DRIEVAKMDGTQRRVLF 117
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
++ +L +P +ALD +F DS ++I MDGT + G+ D
Sbjct: 73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132
Query: 453 AKRLFWCDNLLD--YIETVDYEGKNRFLI 479
L+W D D IET +G NR ++
Sbjct: 133 RGNLYWTDWNRDNPKIETSHMDGTNRRIL 161
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASGVAL 449
++ + L NP + DP G ++ D N+ I ++MDGT + + +G+
Sbjct: 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF 174
Query: 450 DINAKRLFWCD 460
D + +L W D
Sbjct: 175 DAFSSQLCWVD 185
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342
C+ EF C SG C+ S+++CD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 346 CSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
CS +F C +G C+ S+W+CD DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
C +F C + CI S+ CDG DC D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
CS +F C G CI RCDG DC+++ DEE C
Sbjct: 2 CSAFEFHC--LSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 56 CDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
C +F C +G+ CI + +C+ DC D SDEE C
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENC 36
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 342 VNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
V C ++F C++G+C+ W CD +C DGSDE S++TC
Sbjct: 4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE----SQETC 44
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIA 134
C +F+C + CI + CDG +C DGSDE+ T ++
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 46
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETG--CVNVT 345
C EFQC G+C+ + CD +C D SDE+ C++VT
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT 48
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C N+F C G KCI VCDG +C+D +DE C
Sbjct: 8 CERNEFQCQDG------KCISYKWVCDGSAECQDGSDESQETC 44
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 50 ATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEK 90
+ G C+ ++F+C +G KCI K C+ +C D SDE +
Sbjct: 2 SAVGDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQ 41
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 345 TCSLSQFACENGR-CVPSTWKCDSENDCGDGSDE 377
TC S F+C CVP W CD + DC DG+DE
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 299 GNNCNQPTCAPGEFQC-ASGRCVPSTFKCDAENDCGDYSDET 339
G+ TC P F C + CVP + CD + DC D +DE+
Sbjct: 1 GSKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
C + F CP G C+P+ +CDG KDC D ADE
Sbjct: 9 CGPSSFSCP-----GTHVCVPERWLCDGDKDCADGADE 41
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 90 KCNFTACHVGQFKCANS-LCIPVSYHCDGYRDCIDGSDET 128
K C F C + +C+P + CDG +DC DG+DE+
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE 45
+ C P F C H +C+P+ CDG DC + DE
Sbjct: 7 KTCGPSSFSCPGTH-VCVPERWLCDGDKDCADGADE 41
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 345 TCSLSQFAC--ENGRCVPSTWKCDSENDCGDGSDE 377
TC + + +C + +C+P +W+CD ENDC G DE
Sbjct: 2 TCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 95 ACHVGQFKCA--NSLCIPVSYHCDGYRDCIDGSDETNC 130
C + + C ++ CIPVS+ CDG DC G DE NC
Sbjct: 2 TCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 306 TCAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCVN 343
TC E C S +C+P +++CD ENDC DE C N
Sbjct: 2 TCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 41
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
R C + C CIP RCDG DC + +DEE C
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 61 FRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
F CA +C++ +L CN NDCGD SDE C
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR 102
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 312 FQCA-SGRCVPSTFKCDAENDCGDYSDETGCVNV 344
F CA +GRCV C+ +NDCGD SDE C +
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRI 104
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 351 FAC-ENGRCVPSTWKCDSENDCGDGSDEGD------FCSEKTCAYFQFHAIVLGSNL 400
F C + GRCV C+ +NDCGD SDE + C + Y+ ++ G NL
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSLASGINL 127
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 96 CHVGQFKCA--NSLCIPVSYHCDGYRDCIDGSDETNC 130
C + + C ++ CIPVS+ CDG DC G DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 346 CSLSQFAC--ENGRCVPSTWKCDSENDCGDGSDE 377
C + + +C + +C+P +W+CD ENDC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 307 CAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCVN 343
C E C S +C+P +++CD ENDC DE C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C + C CIP RCDG DC + +DEE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 345 TCSLSQFACENGR-CVPSTWKCDSENDCGDGSDE 377
TC S F+C CVP W CD + DC DG+DE
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
C + F CP G C+P+ +CDG KDC D ADE
Sbjct: 7 CGPSSFSCP-----GTHVCVPERWLCDGDKDCADGADE 39
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 306 TCAPGEFQC-ASGRCVPSTFKCDAENDCGDYSDET 339
TC P F C + CVP + CD + DC D +DE+
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 96 CHVGQFKCANS-LCIPVSYHCDGYRDCIDGSDET 128
C F C + +C+P + CDG +DC DG+DE+
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE 45
+ C P F C H +C+P+ CDG DC + DE
Sbjct: 5 KTCGPSSFSCPGTH-VCVPERWLCDGDKDCADGADE 39
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 128 TNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFT 187
T C F C G + +CI VCDG KDC + DE+ CD S++
Sbjct: 46 TKIEGTHCEKRTFQC----GGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNV 101
Query: 188 CQASPTGGVCQCPEGQ 203
+ T C E
Sbjct: 102 FSGTSTWHGCLAREDH 117
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 53 GLSCDLDQFRCA-NGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPV 111
G C+ F+C N Q+CI L C+ H DC + DE+ C K N
Sbjct: 50 GTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP---DVCDTSVVKAGNVFSGTS 106
Query: 112 SYH-CDGYRDCIDGSDETNCTSIACPNNKFL 141
++H C D + T T A KF
Sbjct: 107 TWHGCLAREDHV-----TRITITASKRRKFF 132
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1)
Receptor Ldla Module
Length = 43
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
+ C L F C N KC+ L CN +DCG+ +DE+ C
Sbjct: 5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 94 TACHVGQFKCAN-SLCIPVSYHCDGYRDCIDGSDETNC 130
C +G F C N + C+P HC+G DC + +DE NC
Sbjct: 5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 340 GCVNVTCSLSQFACEN-GRCVPSTWKCDSENDCGDGSDE 377
G +V CSL F C N +C+P C+ +DCG+ +DE
Sbjct: 1 GSQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 307 CAPGEFQCAS-GRCVPSTFKCDAENDCGDYSDETGC 341
C+ G F C + +C+P C+ +DCG+ +DE C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 333 GDYSDETGCVNVTCSLSQFAC-------ENGRCVPSTWKCDSENDCGDGSDEGD 379
GD D+ C + T + Q C E GRC+ C+ + DC DGSDE D
Sbjct: 46 GDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD 99
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 83 GDNSDEEKCNFTACHVGQFKCANSL-------CIPVSYHCDGYRDCIDGSDETNCTSI 133
GD D+ C+ + V Q +C C+ C+G +DC+DGSDE +C +
Sbjct: 46 GDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDV 103
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 311 EFQCA-SGRCVPSTFKCDAENDCGDYSDETGCVNV 344
+FQC +GRC+ C+ + DC D SDE C +V
Sbjct: 69 DFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDV 103
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 61 FRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
F+C +C+ L CN DC D SDE+ C
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 148 GGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTGGVCQ 198
G P+CI CDG KDC D +DE+ C ++ + + T C+
Sbjct: 63 GDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCE 113
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 308 APGEFQCASGRCVPSTFKCDAENDCGDYSDE 338
P +F+C SG C+ C+ DC D+SDE
Sbjct: 8 GPNKFKCHSGECITLDKVCNMARDCRDWSDE 38
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
N C NNGGC H+C + +GY+C C G++L
Sbjct: 46 NECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL 76
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 147 AGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSL 181
G P+CI K VCDG DC + DE+ DC+L
Sbjct: 63 GGDDPQCISKLFVCDGHNDCRNGEDEK----DCTL 93
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 108 CIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFL 141
CI + CDG+ DC +G DE +CT +KF+
Sbjct: 69 CISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFI 102
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 305 PTCAPGEFQCASG--RCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQF 351
P+C E QC +C+ F CD NDC + DE C T + +F
Sbjct: 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKF 101
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
N C NNGGC H+C + +GY+C C G++L
Sbjct: 30 NECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL 60
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
N C NNGGC H+C + +GY+C C G++L
Sbjct: 3 NECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL 33
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
N C NNGGC H+C + +GY+C C G++L
Sbjct: 3 NECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL 33
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
N C NNGGC H+C + +GY+C C G++L
Sbjct: 6 NECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL 36
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 242 VNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRA--SGNALGYKCACDIGY 293
V V + PT+A P +PNPC +NGG C I+ A +GY C C G+
Sbjct: 40 VEVASDEEEPTSAGPCTPNPC--HNGG---TCEISEAYRGDTFIGYVCKCPRGF 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,150,509
Number of Sequences: 62578
Number of extensions: 725218
Number of successful extensions: 1782
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 482
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)